!head -4 /Volumes/web/scaphapoda/Grace/M_donacium_fasta.fa
>GQ18NFG04H441D CTCAGACGTAGATTAAGCGTAAAGATCCAGGAACTCGAAGATATGGTTGAACAACAGAGA ACAAGAGCTGCCAACTTGGAGAAGGCCAAGAACAGGCTTACTATTGAACTCCGTGAAGTC ACCATTGAACTCGAAAATACTCAGATCATTGTTCAAG
Mesodesma donacium is a clam.
!wc -l /Volumes/web/scaphapoda/Grace/M_donacium_fasta.fa
1364949 /Volumes/web/scaphapoda/Grace/M_donacium_fasta.fa
!fgrep -c ">" /Volumes/web/scaphapoda/Grace/M_donacium_fasta.fa
180159
!/Applications/ncbi-blast-2.2.29+/bin/blastx \
-query /Volumes/web/scaphapoda/Grace/M_donacium_fasta.fa \
-db /Volumes/web/whale/blast/db/uniprot_sprot \
-max_target_seqs 1 \
-max_hsps 1 \
-outfmt 6 \
-num_threads 2 \
-out /Volumes/web/scaphapoda/Grace/mesodesma_blastx_uniprot.tab
Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 387 replaced by X Selenocysteine (U) at position 387 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 84 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 197 replaced by X Selenocysteine (U) at position 84 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 84 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 53 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 54 replaced by X Selenocysteine (U) at position 85 replaced by X Selenocysteine (U) at position 74 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 131 replaced by X Selenocysteine (U) at position 128 replaced by X Selenocysteine (U) at position 261 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 53 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 54 replaced by X Selenocysteine (U) at position 64 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 259 replaced by X Selenocysteine (U) at position 277 replaced by X Selenocysteine (U) at position 318 replaced by X Selenocysteine (U) at position 330 replaced by X Selenocysteine (U) at position 352 replaced by X Selenocysteine (U) at position 366 replaced by X Selenocysteine (U) at position 368 replaced by X Selenocysteine (U) at position 375 replaced by X Selenocysteine (U) at position 377 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 637 replaced by X Selenocysteine (U) at position 132 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 84 replaced by X Selenocysteine (U) at position 126 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 197 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 131 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 123 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 297 replaced by X Selenocysteine (U) at position 307 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 350 replaced by X Selenocysteine (U) at position 363 replaced by X Selenocysteine (U) at position 365 replaced by X Selenocysteine (U) at position 372 replaced by X Selenocysteine (U) at position 388 replaced by X Selenocysteine (U) at position 390 replaced by X Selenocysteine (U) at position 397 replaced by X Selenocysteine (U) at position 399 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 93 replaced by X
!tail /Volumes/web/scaphapoda/Grace/mesodesma_blastx_uniprot.tab
GQ18NFG04I7PUP sp|Q9TGD8|COX1_PLADA 66.67 54 18 0 139 300 74 127 4e-11 60.5 GQ18NFG04JI16S sp|Q2NL82|TSR1_HUMAN 37.39 115 63 3 3 332 88 198 1e-13 70.9 GQ18NFG04IN9G2 sp|Q01812|GRIK4_RAT 43.90 41 20 2 17 133 126 165 4.4 28.1 GQ18NFG04JFN32 sp|Q02817|MUC2_HUMAN 32.14 84 49 2 26 259 775 856 0.002 40.0 GQ18NFG04JMQSY sp|P53868|ALG9_YEAST 33.33 45 29 1 42 176 203 246 1.4 30.4 GQ18NFG04IJHK7 sp|Q8ISP0|RS18_BRABE 81.33 75 14 0 83 307 78 152 3e-32 116 GQ18NFG04JT57S sp|Q36427|CYB_LOCMI 75.00 32 8 0 97 2 67 98 4e-10 56.6 GQ18NFG04IEEOV sp|Q8NBI5|S43A3_HUMAN 71.43 14 4 0 61 20 205 218 3.5 27.7 GQ18NFG04I79DH sp|Q0MW30|NEU1B_MOUSE 39.62 53 31 1 111 266 482 534 4e-08 53.5 GQ18NFG04JF1DM sp|P98205|ALA2_ARATH 37.25 51 31 1 168 16 817 866 4.6 29.6
!wc -l /Volumes/web/scaphapoda/Grace/mesodesma_blastx_uniprot.tab
6663 /Volumes/web/scaphapoda/Grace/mesodesma_blastx_uniprot.tab
#fail blast
!/Applications/ncbi-blast-2.2.29+/bin/blastx \
-query /Volumes/web/scaphapoda/Grace/M_donacium_fasta.fa \
-db /Volumes/web/whale/blast/db/uniprot_sprot \
-max_target_seqs 1 \
-max_hsps 1 \
-outfmt 6 \
-num_threads 2 \
-out /Volumes/web/scaphapoda/Grace/mesodesma_blastx_uniprot_b.tab
Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 387 replaced by X Selenocysteine (U) at position 387 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 84 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 197 replaced by X Selenocysteine (U) at position 84 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 84 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 53 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 54 replaced by X Selenocysteine (U) at position 85 replaced by X Selenocysteine (U) at position 74 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 131 replaced by X Selenocysteine (U) at position 128 replaced by X Selenocysteine (U) at position 261 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 53 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 54 replaced by X Selenocysteine (U) at position 64 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 259 replaced by X Selenocysteine (U) at position 277 replaced by X Selenocysteine (U) at position 318 replaced by X Selenocysteine (U) at position 330 replaced by X Selenocysteine (U) at position 352 replaced by X Selenocysteine (U) at position 366 replaced by X Selenocysteine (U) at position 368 replaced by X Selenocysteine (U) at position 375 replaced by X Selenocysteine (U) at position 377 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 637 replaced by X Selenocysteine (U) at position 132 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 84 replaced by X Selenocysteine (U) at position 126 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 197 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 131 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 123 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 297 replaced by X Selenocysteine (U) at position 307 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 350 replaced by X Selenocysteine (U) at position 363 replaced by X Selenocysteine (U) at position 365 replaced by X Selenocysteine (U) at position 372 replaced by X Selenocysteine (U) at position 388 replaced by X Selenocysteine (U) at position 390 replaced by X Selenocysteine (U) at position 397 replaced by X Selenocysteine (U) at position 399 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 193 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 64 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 123 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 17 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 53 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 54 replaced by X Selenocysteine (U) at position 510 replaced by X Selenocysteine (U) at position 523 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 140 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 666 replaced by X Selenocysteine (U) at position 493 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 637 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 52 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 52 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 46 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 64 replaced by X Selenocysteine (U) at position 192 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 204 replaced by X Selenocysteine (U) at position 523 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 122 replaced by X Selenocysteine (U) at position 637 replaced by X Selenocysteine (U) at position 131 replaced by X Selenocysteine (U) at position 140 replaced by X Selenocysteine (U) at position 666 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 637 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 666 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 651 replaced by X Selenocysteine (U) at position 109 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 259 replaced by X Selenocysteine (U) at position 277 replaced by X Selenocysteine (U) at position 318 replaced by X Selenocysteine (U) at position 330 replaced by X Selenocysteine (U) at position 352 replaced by X Selenocysteine (U) at position 366 replaced by X Selenocysteine (U) at position 368 replaced by X Selenocysteine (U) at position 375 replaced by X Selenocysteine (U) at position 377 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 259 replaced by X Selenocysteine (U) at position 277 replaced by X Selenocysteine (U) at position 318 replaced by X Selenocysteine (U) at position 330 replaced by X Selenocysteine (U) at position 352 replaced by X Selenocysteine (U) at position 366 replaced by X Selenocysteine (U) at position 368 replaced by X Selenocysteine (U) at position 375 replaced by X Selenocysteine (U) at position 377 replaced by X Selenocysteine (U) at position 134 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 85 replaced by X Selenocysteine (U) at position 74 replaced by X Selenocysteine (U) at position 510 replaced by X Selenocysteine (U) at position 523 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 53 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 54 replaced by X Selenocysteine (U) at position 17 replaced by X Selenocysteine (U) at position 133 replaced by X Selenocysteine (U) at position 130 replaced by X Selenocysteine (U) at position 263 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 318 replaced by X Selenocysteine (U) at position 330 replaced by X Selenocysteine (U) at position 345 replaced by X Selenocysteine (U) at position 352 replaced by X Selenocysteine (U) at position 367 replaced by X Selenocysteine (U) at position 369 replaced by X Selenocysteine (U) at position 376 replaced by X Selenocysteine (U) at position 378 replaced by X Selenocysteine (U) at position 140 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 84 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 84 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 93 replaced by X Selenocysteine (U) at position 144 replaced by X Selenocysteine (U) at position 122 replaced by X Selenocysteine (U) at position 144 replaced by X Selenocysteine (U) at position 144 replaced by X Selenocysteine (U) at position 144 replaced by X Selenocysteine (U) at position 144 replaced by X Selenocysteine (U) at position 144 replaced by X Selenocysteine (U) at position 24 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 53 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 53 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 54 replaced by X Selenocysteine (U) at position 197 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 129 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 196 replaced by X
!tail /Volumes/web/scaphapoda/Grace/mesodesma_blastx_uniprot_b.tab
GQ18NFG04I7764 sp|P10994|ACTS_PLEWA 92.86 14 1 0 1 42 15 28 0.089 30.8 GQ18NFG04I91E2 sp|Q5QA76|RK20_ACOGR 28.33 60 33 2 213 46 25 78 2.1 30.8 GQ18NFG04IUJTX sp|Q37710|NU5M_ARTSF 52.48 101 48 0 3 305 195 295 4e-17 80.1 GQ18NFG04IXF1K sp|Q8XZ24|SYFB_RALSO 47.37 19 10 0 59 3 663 681 8.1 26.2 GQ18NFG04JFS3S sp|Q86WZ0|HEAT4_HUMAN 56.25 16 7 0 236 189 11 26 6.9 30.4 GQ18NFG04JT4TK sp|O88942|NFAC1_MOUSE 34.88 43 27 1 169 41 9 50 3.2 30.4 GQ18NFG04H60SZ sp|P68698|TOP1_VACCW 41.67 36 20 1 92 196 206 241 3.7 29.6 GQ18NFG04IMP4Z sp|Q6L2L1|RL31_PICTO 55.00 20 9 0 12 71 69 88 5.2 28.1 GQ18NFG04H5EBR sp|P70972|ECFT_BACSU 39.29 28 17 0 23 106 52 79 6.8 26.9 GQ18NFG04JA4QJ sp|P31167|ADT1_ARATH 73.24 71 19 0 345 133 300 370 2e-26 107
!wc -l /Volumes/web/scaphapoda/Grace/mesodesma_blastx_uniprot_b.tab
17559 /Volumes/web/scaphapoda/Grace/mesodesma_blastx_uniprot_b.tab
!grep -c ">" /Volumes/web/scaphapoda/Grace/M_donacium_fasta.fa
180159
#fail blast, but closer than before
Try saving files to computer rather than Eagle for blasting...?