!tail /Volumes/web/scaphapoda/Grace/HardClam_contigs.fa
>Mmercenaria_Contig_8478 CGCGCGCTGCCGAGCCAGCCCTATGGATCCTCGCGACAGGACCGACATCGTGTTATAAGTTCCACTTCGTCATTCCGATCTTCAGTCGCAACAACATGTCTCTTCTCATTGGGCTTTTGTGGCGAAATTGCATGCCGAGGCGTCGGTGCCATCCCCATTCCAATCTCATTATGATTGTCTTTGTCGCAGTTATTTGTTATGTGTCCCTTTGTTGGTGTCAAATCATTTCTTTTAGTATATGCATGTAGCGG >Mmercenaria_Contig_8479 CTGTACGGCCAAGGCGTCTAGTATTTTAATCCAGTTTCTTGTAAATCATGGTCTGTATTGTCAACCATTAGCACACAGCAAAACATAACAAAAACATATATGTCGTTTAACTTAGTACAAATCAAGTAAGCTGAAATAGTCGTCATTACAGGAATGCATAATTCTGTGAAAGAAGATCAAAACTTGGTGCATACTGTTTCAA >Mmercenaria_Contig_8480 AAGCTACAAACCTAAGACCTTAGAATATTATTATAATTTAGCTGTTTTATGCATGTGATACAACAGAAAGAAGTAATAACAAACGCACAGTTTTATTAATTGAAGGTAAATGAAAGACTAGAAAGGTCTATATTAAGTGATTTTCAAAATAAGCAAACCCATTTAATTAATCATTAAAATCTACACCCCTACCAAACTTA >Mmercenaria_Contig_8481 TTGTGCCACACCATTTAGTGTGGACTGAACATTAAACTCACTAGCCACCATCTGTGCGACTTCAGTATTCACCCGTGCTGTTTCTGTAGCATCTTGTAGGGCATGATATAACGTACGGCCAAGGCGCAACAGGAAACTACTAGAGCTGTCTATAGGGTAACCATCAGACACATGAGGCTCTGCAATCACTGGCTCTCGTACTGCTTGACTTAGTATT >Mmercenaria_Contig_8482 AAATCCTAGAATCTCCAAAAAAAAAGTTGTTCTGTTCGCTCAATCACTGTTCACACTCAAACATGATTTTGAAAGACATTATACATAATCTAACCTTTAACAAAATGTGTTGATTTTTCTATTCATTCATATACTGTAATTTCTCCATAAGTTAACATTTCTTTATACAATGTTATATCAAAAAGGTTGGTCAAAATTTAAGCCGCCAACACTGTTACA
!blastx \
-query /Volumes/web/scaphapoda/Grace/HardClam_contigs.fa \
-db /Volumes/Data/blast_db/uniprot_sprot \
-max_target_seqs 1 \
-max_hsps 1 \
-outfmt 6 \
-num_threads 8 \
-out /Volumes/web/scaphapoda/Grace/mercenaria_blastx_uniprot_hummingbird.tab
Selenocysteine (U) at position 144 replaced by X Selenocysteine (U) at position 144 replaced by X Selenocysteine (U) at position 144 replaced by X Selenocysteine (U) at position 121 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 387 replaced by X Selenocysteine (U) at position 387 replaced by X Selenocysteine (U) at position 388 replaced by X Selenocysteine (U) at position 387 replaced by X Selenocysteine (U) at position 140 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 7 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 648 replaced by X Selenocysteine (U) at position 642 replaced by X Selenocysteine (U) at position 651 replaced by X Selenocysteine (U) at position 52 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 75 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 52 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 46 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 43 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 40 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 64 replaced by X Selenocysteine (U) at position 15 replaced by X Selenocysteine (U) at position 637 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 525 replaced by X Selenocysteine (U) at position 690 replaced by X Selenocysteine (U) at position 498 replaced by X Selenocysteine (U) at position 666 replaced by X Selenocysteine (U) at position 494 replaced by X Selenocysteine (U) at position 648 replaced by X Selenocysteine (U) at position 612 replaced by X Selenocysteine (U) at position 498 replaced by X Selenocysteine (U) at position 498 replaced by X Selenocysteine (U) at position 498 replaced by X Selenocysteine (U) at position 510 replaced by X Selenocysteine (U) at position 523 replaced by X Selenocysteine (U) at position 523 replaced by X Selenocysteine (U) at position 525 replaced by X Selenocysteine (U) at position 642 replaced by X Selenocysteine (U) at position 651 replaced by X Selenocysteine (U) at position 120 replaced by X Selenocysteine (U) at position 127 replaced by X Selenocysteine (U) at position 462 replaced by X Selenocysteine (U) at position 64 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 498 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 84 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 297 replaced by X Selenocysteine (U) at position 307 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 350 replaced by X Selenocysteine (U) at position 363 replaced by X Selenocysteine (U) at position 365 replaced by X Selenocysteine (U) at position 372 replaced by X Selenocysteine (U) at position 388 replaced by X Selenocysteine (U) at position 390 replaced by X Selenocysteine (U) at position 397 replaced by X Selenocysteine (U) at position 399 replaced by X Selenocysteine (U) at position 133 replaced by X Selenocysteine (U) at position 266 replaced by X Selenocysteine (U) at position 133 replaced by X Selenocysteine (U) at position 266 replaced by X Selenocysteine (U) at position 133 replaced by X Selenocysteine (U) at position 266 replaced by X Selenocysteine (U) at position 388 replaced by X Selenocysteine (U) at position 17 replaced by X Selenocysteine (U) at position 128 replaced by X Selenocysteine (U) at position 261 replaced by X Selenocysteine (U) at position 642 replaced by X Selenocysteine (U) at position 613 replaced by X Selenocysteine (U) at position 498 replaced by X Selenocysteine (U) at position 648 replaced by X Selenocysteine (U) at position 498 replaced by X Selenocysteine (U) at position 498 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 65 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 53 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 54 replaced by X Selenocysteine (U) at position 613 replaced by X Selenocysteine (U) at position 613 replaced by X Selenocysteine (U) at position 59 replaced by X Selenocysteine (U) at position 267 replaced by X Selenocysteine (U) at position 273 replaced by X Selenocysteine (U) at position 279 replaced by X Selenocysteine (U) at position 290 replaced by X Selenocysteine (U) at position 292 replaced by X Selenocysteine (U) at position 294 replaced by X Selenocysteine (U) at position 310 replaced by X Selenocysteine (U) at position 320 replaced by X Selenocysteine (U) at position 322 replaced by X Selenocysteine (U) at position 336 replaced by X Selenocysteine (U) at position 338 replaced by X Selenocysteine (U) at position 346 replaced by X Selenocysteine (U) at position 353 replaced by X Selenocysteine (U) at position 355 replaced by X Selenocysteine (U) at position 362 replaced by X Selenocysteine (U) at position 364 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 121 replaced by X Selenocysteine (U) at position 126 replaced by X Selenocysteine (U) at position 126 replaced by X Selenocysteine (U) at position 126 replaced by X Selenocysteine (U) at position 126 replaced by X Selenocysteine (U) at position 126 replaced by X Selenocysteine (U) at position 126 replaced by X Selenocysteine (U) at position 75 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 43 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 129 replaced by X Selenocysteine (U) at position 129 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 387 replaced by X Selenocysteine (U) at position 132 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 49 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 52 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 46 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 43 replaced by X Selenocysteine (U) at position 18 replaced by X Selenocysteine (U) at position 38 replaced by X Selenocysteine (U) at position 13 replaced by X Selenocysteine (U) at position 17 replaced by X Selenocysteine (U) at position 17 replaced by X Selenocysteine (U) at position 15 replaced by X Selenocysteine (U) at position 17 replaced by X Selenocysteine (U) at position 15 replaced by X Selenocysteine (U) at position 15 replaced by X Selenocysteine (U) at position 15 replaced by X Selenocysteine (U) at position 25 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 17 replaced by X Selenocysteine (U) at position 13 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 21 replaced by X Selenocysteine (U) at position 24 replaced by X Selenocysteine (U) at position 60 replaced by X Selenocysteine (U) at position 63 replaced by X Selenocysteine (U) at position 63 replaced by X Selenocysteine (U) at position 666 replaced by X Selenocysteine (U) at position 126 replaced by X Selenocysteine (U) at position 15 replaced by X Selenocysteine (U) at position 637 replaced by X Selenocysteine (U) at position 612 replaced by X Selenocysteine (U) at position 122 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 47 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 73 replaced by X Selenocysteine (U) at position 523 replaced by X Selenocysteine (U) at position 525 replaced by X Selenocysteine (U) at position 642 replaced by X Selenocysteine (U) at position 349 replaced by X Selenocysteine (U) at position 18 replaced by X Selenocysteine (U) at position 38 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 13 replaced by X Selenocysteine (U) at position 17 replaced by X Selenocysteine (U) at position 17 replaced by X Selenocysteine (U) at position 15 replaced by X Selenocysteine (U) at position 17 replaced by X Selenocysteine (U) at position 15 replaced by X Selenocysteine (U) at position 15 replaced by X Selenocysteine (U) at position 15 replaced by X Selenocysteine (U) at position 25 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 17 replaced by X Selenocysteine (U) at position 13 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 19 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 7 replaced by X Selenocysteine (U) at position 16 replaced by X Selenocysteine (U) at position 21 replaced by X Selenocysteine (U) at position 189 replaced by X Selenocysteine (U) at position 24 replaced by X Selenocysteine (U) at position 60 replaced by X Selenocysteine (U) at position 63 replaced by X Selenocysteine (U) at position 63 replaced by X Selenocysteine (U) at position 196 replaced by X Selenocysteine (U) at position 189 replaced by X Selenocysteine (U) at position 350 replaced by X
!tail /Volumes/web/scaphapoda/Grace/mercenaria_blastx_uniprot_hummingbird.tab
Mmercenaria_Contig_8471 sp|Q3U6U5|GTPB6_MOUSE 41.03 39 23 0 199 83 462 500 0.038 35.0 Mmercenaria_Contig_8472 sp|Q6YRK2|RL9_ONYPE 35.00 40 25 1 51 170 811 849 2.6 29.3 Mmercenaria_Contig_8473 sp|A9A5K6|BIOB_NITMS 28.85 52 37 0 189 34 85 136 0.56 31.2 Mmercenaria_Contig_8474 sp|P06789|VE1_HPV18 42.50 40 22 1 126 7 346 384 0.82 31.2 Mmercenaria_Contig_8475 sp|Q8C7R4|UBA6_MOUSE 41.18 34 16 1 114 25 417 450 8.2 28.5 Mmercenaria_Contig_8476 sp|B4K5S8|ASUN_DROMO 39.29 28 17 0 175 92 364 391 7.4 27.7 Mmercenaria_Contig_8477 sp|A6UB95|SDHD_SINMW 29.69 64 37 1 227 60 255 318 1.1 30.8 Mmercenaria_Contig_8478 sp|P09824|NIFB_RHIME 33.33 42 28 0 134 9 273 314 0.98 30.8 Mmercenaria_Contig_8479 sp|A1CTK4|FAEB_ASPCL 31.67 60 37 1 25 192 214 273 4.8 28.5 Mmercenaria_Contig_8481 sp|Q15750|TAB1_HUMAN 38.89 72 44 0 216 1 257 328 2e-10 59.3
#finished
#short transcriptome