Initial characterization was described elsewhere.. The genomic feature track is below
!head /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_TE.gff
C21242 TRF Tandem_Repeat 38 100 72 + . . C21306 TRF Tandem_Repeat 35 143 112 + . . C21306 TRF Tandem_Repeat 574 947 208 + . . C21306 TRF Tandem_Repeat 574 901 313 + . . C21372 TRF Tandem_Repeat 643 671 58 + . . C22542 TRF Tandem_Repeat 1727 1774 96 + . . C22728 TRF Tandem_Repeat 426 491 105 + . . C23428 TRF Tandem_Repeat 130 415 202 + . . C23796 TRF Tandem_Repeat 547 608 97 + . . C24440 TRF Tandem_Repeat 1059 1089 62 + . .
!wc -l /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_TE.gff
119786 /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_TE.gff
!awk '{print $2}' /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_TE.gff | uniq
['TRF', 'WUBlastX']
!awk '{print $3}' /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_TE.gff | sort | uniq
DNA DNA?_Crypton? DNA_Academ DNA_Chapaev DNA_Chapaev-Cha DNA_Crypton DNA_En-Spm DNA_Harbinger DNA_Helitron DNA_IS DNA_IS4EU DNA_Kolobok DNA_Kolobok-Hyd DNA_Kolobok-IS4 DNA_Maverick DNA_Merlin DNA_MuDR DNA_NOF DNA_NOF? DNA_Novosib DNA_P DNA_PiggyBac DNA_Sola DNA_TcMar DNA_TcMar-Ant1 DNA_TcMar-Fot1 DNA_TcMar-IS630 DNA_TcMar-IS885 DNA_TcMar-ISRm1 DNA_TcMar-M44 DNA_TcMar-Marin DNA_TcMar-Pogo DNA_TcMar-Stowa DNA_TcMar-Tc1 DNA_TcMar-Tc2 DNA_TcMar-Tigge DNA_TcMar-m44 DNA_Transib DNA_Zator DNA_hAT DNA_hAT-Ac DNA_hAT-Blackja DNA_hAT-Charlie DNA_hAT-Hobo DNA_hAT-Restles DNA_hAT-Tag1 DNA_hAT-Tip100 DNA_hAT-Tip100? DNA_hAT-Tol2 DNA_hAT-hAT5 DNA_hAT-hATw DNA_hAT-hATx LINE_CR1 LINE_CR1-L2 LINE_DRE LINE_Dong-R4 LINE_I LINE_I-Nimb LINE_Jockey LINE_L1 LINE_L1-Tx1 LINE_L1? LINE_L2 LINE_L2-Hydra LINE_LOA LINE_Odin LINE_Penelope LINE_Proto2 LINE_R1 LINE_R2 LINE_R2-Hero LINE_RTE LINE_RTE-BovB LINE_RTE-RTE LINE_RTE-X LINE_Rex-Babar LINE_Tad1? LINE_Telomeric LINE_Zorro LTR_Caulimoviru LTR_Copia LTR_DIRS LTR_DIRS? LTR_Delta LTR_ERV-Foamy LTR_ERV-Lenti LTR_ERV1 LTR_ERVK LTR_ERVL LTR_Foamy LTR_Gypsy LTR_Gypsy-Cigr LTR_Gypsy-Gmr1 LTR_Gypsy-Troyk LTR_Gypsy? LTR_Lenti LTR_Ngaro LTR_Pao RC_Helitron Tandem_Repeat Unknown
!grep "WUBlast" /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_TE.gff | head
scaffold1479 WUBlastX LTR_Gypsy 2608 4209 104 + . . C33730 WUBlastX LTR_Pao 1960 2589 652 - . . C33730 WUBlastX LTR_Pao 3358 5868 1471 - . . C33730 WUBlastX LTR_Pao 6390 7283 627 - . . C33730 WUBlastX LTR_Pao 7412 7684 35 - . . scaffold1053 WUBlastX LTR_Pao 209281 213366 2970 + . . scaffold1053 WUBlastX LTR_Pao 213366 214466 1161 + . . scaffold1024 WUBlastX LTR_Pao 160588 161058 515 + . . scaffold1154 WUBlastX LTR_Pao 208643 211198 1815 + . . scaffold1328 WUBlastX LTR_Pao 311668 316782 3981 - . .
!grep "WUBlast" /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_TE.gff > /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff
!wc -l /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff
58468 /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff
!awk '{print $3}' /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff | sort | uniq
DNA DNA?_Crypton? DNA_Academ DNA_Chapaev DNA_Chapaev-Cha DNA_Crypton DNA_En-Spm DNA_Harbinger DNA_Helitron DNA_IS DNA_IS4EU DNA_Kolobok DNA_Kolobok-Hyd DNA_Kolobok-IS4 DNA_Maverick DNA_Merlin DNA_MuDR DNA_NOF DNA_NOF? DNA_Novosib DNA_P DNA_PiggyBac DNA_Sola DNA_TcMar DNA_TcMar-Ant1 DNA_TcMar-Fot1 DNA_TcMar-IS630 DNA_TcMar-IS885 DNA_TcMar-ISRm1 DNA_TcMar-M44 DNA_TcMar-Marin DNA_TcMar-Pogo DNA_TcMar-Stowa DNA_TcMar-Tc1 DNA_TcMar-Tc2 DNA_TcMar-Tigge DNA_TcMar-m44 DNA_Transib DNA_Zator DNA_hAT DNA_hAT-Ac DNA_hAT-Blackja DNA_hAT-Charlie DNA_hAT-Hobo DNA_hAT-Restles DNA_hAT-Tag1 DNA_hAT-Tip100 DNA_hAT-Tip100? DNA_hAT-Tol2 DNA_hAT-hAT5 DNA_hAT-hATw DNA_hAT-hATx LINE_CR1 LINE_CR1-L2 LINE_DRE LINE_Dong-R4 LINE_I LINE_I-Nimb LINE_Jockey LINE_L1 LINE_L1-Tx1 LINE_L1? LINE_L2 LINE_L2-Hydra LINE_LOA LINE_Odin LINE_Penelope LINE_Proto2 LINE_R1 LINE_R2 LINE_R2-Hero LINE_RTE LINE_RTE-BovB LINE_RTE-RTE LINE_RTE-X LINE_Rex-Babar LINE_Tad1? LINE_Telomeric LINE_Zorro LTR_Caulimoviru LTR_Copia LTR_DIRS LTR_DIRS? LTR_Delta LTR_ERV-Foamy LTR_ERV-Lenti LTR_ERV1 LTR_ERVK LTR_ERVL LTR_Foamy LTR_Gypsy LTR_Gypsy-Cigr LTR_Gypsy-Gmr1 LTR_Gypsy-Troyk LTR_Gypsy? LTR_Lenti LTR_Ngaro LTR_Pao RC_Helitron Unknown
!grep "TRF" /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_TE.gff | head
C21242 TRF Tandem_Repeat 38 100 72 + . . C21306 TRF Tandem_Repeat 35 143 112 + . . C21306 TRF Tandem_Repeat 574 947 208 + . . C21306 TRF Tandem_Repeat 574 901 313 + . . C21372 TRF Tandem_Repeat 643 671 58 + . . C22542 TRF Tandem_Repeat 1727 1774 96 + . . C22728 TRF Tandem_Repeat 426 491 105 + . . C23428 TRF Tandem_Repeat 130 415 202 + . . C23796 TRF Tandem_Repeat 547 608 97 + . . C24440 TRF Tandem_Repeat 1059 1089 62 + . .
!grep "TRF" /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_TE.gff > /Volumes/web/cnidarian/Cgigas_v9_TE_TRFonly.gff
!wc -l /Volumes/web/cnidarian/Cgigas_v9_TE_TRFonly.gff
61319 /Volumes/web/cnidarian/Cgigas_v9_TE_TRFonly.gff
61319 + 58468
119787
!awk '{print $3}' /Volumes/web/cnidarian/Cgigas_v9_TE_TRFonly.gff | sort | uniq
Tandem_Repeat
btd = "/Applications/bedtools2/bin/"
!{btd}intersectbed
Tool: bedtools intersect (aka intersectBed) Version: v2.21.0 Summary: Report overlaps between two feature files. Usage: bedtools intersect [OPTIONS] -a <bed/gff/vcf> -b <bed/gff/vcf> Note: -b may be followed with multiple databases and/or wildcard (*) character(s). Options: -abam The A input file is in BAM format. Output will be BAM as well. -ubam Write uncompressed BAM output. Default writes compressed BAM. -bed When using BAM input (-abam), write output as BED. The default is to write output in BAM when using -abam. -wa Write the original entry in A for each overlap. -wb Write the original entry in B for each overlap. - Useful for knowing _what_ A overlaps. Restricted by -f and -r. -loj Perform a "left outer join". That is, for each feature in A report each overlap with B. If no overlaps are found, report a NULL feature for B. -wo Write the original A and B entries plus the number of base pairs of overlap between the two features. - Overlaps restricted by -f and -r. Only A features with overlap are reported. -wao Write the original A and B entries plus the number of base pairs of overlap between the two features. - Overlapping features restricted by -f and -r. However, A features w/o overlap are also reported with a NULL B feature and overlap = 0. -u Write the original A entry _once_ if _any_ overlaps found in B. - In other words, just report the fact >=1 hit was found. - Overlaps restricted by -f and -r. -c For each entry in A, report the number of overlaps with B. - Reports 0 for A entries that have no overlap with B. - Overlaps restricted by -f and -r. -v Only report those entries in A that have _no overlaps_ with B. - Similar to "grep -v" (an homage). -f Minimum overlap required as a fraction of A. - Default is 1E-9 (i.e., 1bp). - FLOAT (e.g. 0.50) -r Require that the fraction overlap be reciprocal for A and B. - In other words, if -f is 0.90 and -r is used, this requires that B overlap 90% of A and A _also_ overlaps 90% of B. -s Require same strandedness. That is, only report hits in B that overlap A on the _same_ strand. - By default, overlaps are reported without respect to strand. -S Require different strandedness. That is, only report hits in B that overlap A on the _opposite_ strand. - By default, overlaps are reported without respect to strand. -split Treat "split" BAM or BED12 entries as distinct BED intervals. -sorted Use the "chromsweep" algorithm for sorted (-k1,1 -k2,2n) input. -g Provide a genome file to enforce consistent chromosome sort order across input files. Only applies when used with -sorted option. -header Print the header from the A file prior to results. -nobuf Disable buffered output. Using this option will cause each line of output to be printed as it is generated, rather than saved in a buffer. This will make printing large output files noticeably slower, but can be useful in conjunction with other software tools and scripts that need to process one line of bedtools output at a time. -names When using multiple databases, provide an alias for each that will appear instead of a fileId when also printing the DB record. -filenames When using multiple databases, show each complete filename instead of a fileId when also printing the DB record. -sortout When using multiple databases, sort the output DB hits for each record. -iobuf Follow with desired integer size of read buffer. Optional suffixes K/M/G supported. Note: currently has no effect with compressed files. Notes: (1) When a BAM file is used for the A file, the alignment is retained if overlaps exist, and exlcuded if an overlap cannot be found. If multiple overlaps exist, they are not reported, as we are only testing for one or more overlaps.
!{btd}intersectbed -u \
-a /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff \
-b /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_gene.gff \
| wc -l
13558
!{btd}intersectbed -u \
-a /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff \
-b /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_exon.gff \
| wc -l
2119
btd = "/Volumes/Bay3/Software/bedtools-2.17.0/bin/"
!{btd}intersectbed -u \
-a /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff \
-b /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_intron.gff \
| wc -l
12442
12442 + 2119
14561
!{btd}intersectbed -u \
-a /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff \
-b /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_COMP_gene_prom_TE.bed
!head /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff
scaffold1479 WUBlastX LTR_Gypsy 2608 4209 104 + . . C33730 WUBlastX LTR_Pao 1960 2589 652 - . . C33730 WUBlastX LTR_Pao 3358 5868 1471 - . . C33730 WUBlastX LTR_Pao 6390 7283 627 - . . C33730 WUBlastX LTR_Pao 7412 7684 35 - . . scaffold1053 WUBlastX LTR_Pao 209281 213366 2970 + . . scaffold1053 WUBlastX LTR_Pao 213366 214466 1161 + . . scaffold1024 WUBlastX LTR_Pao 160588 161058 515 + . . scaffold1154 WUBlastX LTR_Pao 208643 211198 1815 + . . scaffold1328 WUBlastX LTR_Pao 311668 316782 3981 - . .
!tail /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_COMP_gene_prom_TE.bed
scaffold999 141123 144756 scaffold999 144809 145755 scaffold999 145794 146540 scaffold999 146591 148826 scaffold999 148865 149058 scaffold999 149146 152865 scaffold999 153196 165168 scaffold999 165276 165638 scaffold999 166144 166753 scaffold999 166792 167910
!{btd}intersectbed -u \
-a /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff \
-b /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_1k5p_gene_promoter.gff | wc -l
2720
!{btd}intersectbed -wb \
-a /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_TE.gff \
-b /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_gene.gff | \
awk '{print $3, $18'} | \
sed 's/ID=C/C/g' | \
sed 's/;//g' > /Volumes/web/cnidarian/TE_CGI.txt
/bin/sh: {btd}intersectbed: command not found
!{btd}intersectbed -wb \
-a /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_TE.gff \
-b /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_gene.gff \
> /Volumes/web/cnidarian/TE_inter_wb_gene.tab
!awk '{print $3, $18'} /Volumes/web/cnidarian/TE_inter_wb_gene.tab | \
sed 's/ID=C/C/g' | \
sed 's/;//g' > /Volumes/web/cnidarian/TE_CGI.txt
!head /Volumes/web/cnidarian/TE_CGI.txt
Tandem_Repeat CGI_10000320 Tandem_Repeat CGI_10000320 Tandem_Repeat CGI_10000500 Tandem_Repeat CGI_10000500 Tandem_Repeat CGI_10000526 Tandem_Repeat CGI_10000629 Tandem_Repeat CGI_10000645 Tandem_Repeat CGI_10000680 Tandem_Repeat CGI_10000731 Tandem_Repeat CGI_10000739
!{btd}intersectbed -loj \
-a /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff \
-b /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_gene.gff
scaffold1479 WUBlastX LTR_Gypsy 2608 4209 104 + . . . . . -1 -1 -1 . . . C33730 WUBlastX LTR_Pao 1960 2589 652 - . . . . . -1 -1 -1 . . . C33730 WUBlastX LTR_Pao 3358 5868 1471 - . . . . . -1 -1 -1 . . . C33730 WUBlastX LTR_Pao 6390 7283 627 - . . . . . -1 -1 -1 . . . C33730 WUBlastX LTR_Pao 7412 7684 35 - . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LTR_Pao 209281 213366 2970 + . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LTR_Pao 213366 214466 1161 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Pao 160588 161058 515 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Pao 208643 211198 1815 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Pao 311668 316782 3981 - . . scaffold1328 GLEAN mRNA 310802 321439 0.78586 - . ID=CGI_10012993; scaffold1375 WUBlastX LTR_Pao 20889 21428 457 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Pao 82874 84034 569 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Pao 32590 33798 468 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_Pao 23813 27868 3196 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Pao 231710 232417 563 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Pao 232452 235757 2705 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 621436 621780 318 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold209 WUBlastX LTR_Pao 211325 212788 1304 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Pao 212809 213582 617 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Pao 213582 214592 1003 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Pao 215952 217175 153 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1166968 1172142 4168 + . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LTR_Pao 123000 123638 25 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Pao 69574 74688 3981 - . . . . . -1 -1 -1 . . . scaffold265 WUBlastX LTR_Pao 22442 24559 958 + . . . . . -1 -1 -1 . . . scaffold265 WUBlastX LTR_Pao 24658 26841 1851 + . . . . . -1 -1 -1 . . . scaffold31920 WUBlastX LTR_Pao 1308 1946 46 + . . . . . -1 -1 -1 . . . scaffold36926 WUBlastX LTR_Pao 6186 7412 728 + . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX LTR_Pao 13175 18289 3977 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Pao 47670 48161 376 + . . . . . -1 -1 -1 . . . scaffold39620 WUBlastX LTR_Pao 68166 68351 151 - . . . . . -1 -1 -1 . . . scaffold41664 WUBlastX LTR_Pao 106051 107688 1066 - . . . . . -1 -1 -1 . . . scaffold43066 WUBlastX LTR_Pao 88360 89670 868 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Pao 293081 293998 683 + . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 16017 17399 1115 - . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 17402 18340 656 - . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 19731 20525 181 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Pao 95890 96408 34 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Pao 661422 662204 615 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Pao 662658 663386 429 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LTR_Pao 98518 103632 3981 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 28499 33406 3681 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 33446 34051 49 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Pao 6419 6658 170 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Pao 383994 385592 875 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 316868 317164 249 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Pao 59810 60643 511 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold43066 WUBlastX LTR_Pao 87194 88336 974 - . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 19007 19390 257 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Pao 261936 262292 40 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 11775 11951 113 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 13573 14046 328 - . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 19815 21011 143 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 31628 33928 1002 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Pao 6314 6661 162 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Pao 448828 454497 3058 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 315143 316033 828 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Pao 451165 451542 74 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold156 WUBlastX LTR_Pao 56116 56754 595 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 56763 57113 367 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 60579 61241 303 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1714 WUBlastX LTR_Pao 82343 84022 514 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Pao 87339 87575 209 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_Pao 22272 23237 55 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Pao 230125 230538 20 + . . . . . -1 -1 -1 . . . scaffold31920 WUBlastX LTR_Pao 1695 6983 3575 + . . . . . -1 -1 -1 . . . scaffold41664 WUBlastX LTR_Pao 103670 104830 936 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Pao 266565 267041 389 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Pao 571287 572459 1195 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Pao 572670 576425 2032 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Pao 4215 4850 553 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Pao 571085 573070 216 + . . scaffold1018 GLEAN mRNA 568631 598731 0.537907 - . ID=CGI_10019780; scaffold104 WUBlastX LTR_Pao 2768 3367 140 + . . . . . -1 -1 -1 . . . scaffold104 WUBlastX LTR_Pao 3890 4354 483 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Pao 55753 58983 1721 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Pao 161040 163559 1973 + . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LTR_Pao 214465 214554 38 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Pao 211171 213843 2329 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Pao 317257 317523 58 - . . scaffold1328 GLEAN mRNA 310802 321439 0.78586 - . ID=CGI_10012993; scaffold1532 WUBlastX LTR_Pao 144559 144834 24 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Pao 59305 59772 285 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1714 WUBlastX LTR_Pao 87509 87907 308 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LTR_Pao 142933 145704 1870 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Pao 75100 75366 58 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Pao 282687 283715 916 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold38492 WUBlastX LTR_Pao 12308 12661 54 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Pao 45433 46107 656 + . . . . . -1 -1 -1 . . . scaffold43066 WUBlastX LTR_Pao 89628 90119 286 - . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 19393 19677 95 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Pao 261906 262196 48 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LTR_Pao 104107 104373 58 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Pao 2104 4224 1283 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Pao 448639 449211 43 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LTR_Pao 581251 581544 245 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold1021 WUBlastX LTR_Pao 586892 587539 20 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold1154 WUBlastX LTR_Pao 208007 211198 1814 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 316128 316853 457 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Pao 57913 58596 516 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 59293 59682 299 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 59675 59803 57 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1611 WUBlastX LTR_Pao 139000 140454 329 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LTR_Pao 21615 24554 921 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Pao 580587 580679 49 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 618407 619150 29 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold1759 WUBlastX LTR_Pao 37473 37757 223 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_Pao 21921 22718 34 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Pao 230593 231408 507 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Pao 215952 217406 149 - . . . . . -1 -1 -1 . . . scaffold31920 WUBlastX LTR_Pao 6976 7242 212 + . . . . . -1 -1 -1 . . . scaffold36926 WUBlastX LTR_Pao 4674 5144 22 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Pao 46145 46852 542 + . . . . . -1 -1 -1 . . . scaffold39620 WUBlastX LTR_Pao 67837 68151 216 - . . . . . -1 -1 -1 . . . scaffold39620 WUBlastX LTR_Pao 72715 73260 33 - . . . . . -1 -1 -1 . . . scaffold41664 WUBlastX LTR_Pao 105206 105838 469 - . . . . . -1 -1 -1 . . . scaffold41664 WUBlastX LTR_Pao 105951 106043 42 - . . . . . -1 -1 -1 . . . scaffold43066 WUBlastX LTR_Pao 86698 87189 398 - . . . . . -1 -1 -1 . . . scaffold43066 WUBlastX LTR_Pao 91817 92404 39 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Pao 295767 296510 545 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Pao 662239 662655 223 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Pao 261347 261856 26 + . . scaffold681 GLEAN mRNA 261347 261886 0.999068 + . ID=CGI_10014731; scaffold748 WUBlastX LTR_Pao 16406 18340 384 - . . scaffold748 GLEAN mRNA 17858 18358 0.999372 - . ID=CGI_10012638; scaffold773 WUBlastX LTR_Pao 175305 176849 353 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Pao 575526 577535 318 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Pao 5266 6240 869 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Pao 639680 644518 2677 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Pao 385621 388863 1795 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LTR_Pao 225834 230666 2679 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Pao 157218 158207 385 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Pao 139909 142926 2110 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Pao 142923 144026 624 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Pao 57119 57946 495 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1714 WUBlastX LTR_Pao 85837 87348 1179 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Pao 230194 231399 468 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Pao 284821 285438 442 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold36926 WUBlastX LTR_Pao 7414 10488 2423 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Pao 46044 46133 53 + . . . . . -1 -1 -1 . . . scaffold39620 WUBlastX LTR_Pao 68317 70326 1422 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Pao 660829 661419 451 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Pao 662658 663668 385 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Pao 262265 262696 217 + . . . . . -1 -1 -1 . . . scaffold1375 WUBlastX LTR_Pao 21430 21516 49 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Pao 143998 144432 236 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Pao 61881 62093 69 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Pao 578766 580646 1042 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 623235 623312 36 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold209 WUBlastX LTR_Pao 214586 215941 745 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Pao 126784 127713 929 + . . . . . -1 -1 -1 . . . scaffold39620 WUBlastX LTR_Pao 70323 70742 322 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 13029 13334 308 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Pao 1968 2108 53 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LTR_Pao 585552 586595 274 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold169 WUBlastX LTR_Pao 580679 581131 301 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 621779 622255 374 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold286 WUBlastX LTR_Pao 283721 284821 735 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold38876 WUBlastX LTR_Pao 46857 47033 108 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Pao 215949 216965 254 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Pao 192844 196251 2687 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Pao 658638 660815 1686 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Pao 663613 664005 52 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Pao 663903 664091 24 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Pao 945 1133 23 + . . . . . -1 -1 -1 . . . scaffold104 WUBlastX LTR_Pao 519 2768 1652 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_Pao 127659 127994 52 + . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_Pao 128706 131678 2481 + . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold619 WUBlastX LTR_Pao 54405 55742 886 - . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LTR_Pao 387189 389708 1753 - . . scaffold43986 GLEAN mRNA 386684 393718 0.985724 - . ID=CGI_10015036; scaffold43986 WUBlastX LTR_Pao 389716 391899 1449 - . . scaffold43986 GLEAN mRNA 386684 393718 0.985724 - . ID=CGI_10015036; scaffold43986 WUBlastX LTR_Pao 391892 392536 388 - . . scaffold43986 GLEAN mRNA 386684 393718 0.985724 - . ID=CGI_10015036; scaffold1021 WUBlastX LTR_Pao 581544 583004 1070 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold1053 WUBlastX LTR_Pao 208990 209202 44 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Pao 61229 61339 20 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1750 WUBlastX LTR_Pao 623305 625314 1514 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold1836 WUBlastX LTR_Pao 145682 148000 1380 - . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_Pao 22380 22790 69 + . . . . . -1 -1 -1 . . . scaffold36926 WUBlastX LTR_Pao 5237 6160 395 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Pao 262352 262699 246 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Pao 170964 175034 2946 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Pao 157521 158153 387 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Pao 144004 144747 236 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Pao 62288 62683 21 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Pao 231413 232417 520 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Pao 287296 288240 247 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold43066 WUBlastX LTR_Pao 90122 91747 1000 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Pao 265036 266610 997 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Pao 267041 267460 377 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 28267 28527 190 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Pao 1815 2108 20 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Pao 156999 158126 332 + . . . . . -1 -1 -1 . . . scaffold1251 WUBlastX LTR_Pao 38192 42400 2981 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Pao 452136 456443 2853 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold156 WUBlastX LTR_Pao 58985 59308 257 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold169 WUBlastX LTR_Pao 581038 583860 2370 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 618746 621442 965 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold1759 WUBlastX LTR_Pao 32194 33798 396 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LTR_Pao 145694 148462 1282 - . . . . . -1 -1 -1 . . . scaffold43066 WUBlastX LTR_Pao 90122 92263 941 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Pao 1339771 1343103 2802 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Pao 158078 159628 945 + . . . . . -1 -1 -1 . . . scaffold1375 WUBlastX LTR_Pao 23813 25042 648 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Pao 1065701 1070743 3622 + . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LTR_Pao 139219 144912 4008 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LTR_Pao 18348 24005 3475 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Pao 578484 578831 45 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Pao 84042 85826 1346 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 619346 621433 1051 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold1759 WUBlastX LTR_Pao 33788 37465 2497 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Pao 123258 126791 2073 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Pao 865409 870775 3649 + . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LTR_Pao 123366 128960 3659 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Pao 285429 287246 1125 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold38876 WUBlastX LTR_Pao 43160 45436 960 + . . . . . -1 -1 -1 . . . scaffold39620 WUBlastX LTR_Pao 71223 72500 520 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Pao 292003 293178 475 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Pao 1344829 1345191 54 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Pao 262923 265016 1317 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Pao 50205 54206 2849 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Pao 4811 5266 195 + . . . . . -1 -1 -1 . . . scaffold104 WUBlastX LTR_Pao 3298 3924 644 + . . . . . -1 -1 -1 . . . scaffold104 WUBlastX LTR_Pao 4353 4457 72 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Pao 205361 205621 257 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold1018 WUBlastX LTR_Pao 573031 577050 3264 + . . scaffold1018 GLEAN mRNA 568631 598731 0.537907 - . ID=CGI_10019780; scaffold1267 WUBlastX LTR_Pao 350508 351734 1010 + . . . . . -1 -1 -1 . . . scaffold1495 WUBlastX LTR_Pao 42844 48789 4019 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Pao 53767 54402 632 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Pao 200986 205353 2885 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold925 WUBlastX LTR_Pao 127719 128678 390 + . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold851 WUBlastX LTR_Gypsy 1251 5387 3368 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 633596 637798 2983 - . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Gypsy 10578 11774 914 - . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Gypsy 11779 14787 1985 - . . . . . -1 -1 -1 . . . C36038 WUBlastX LTR_Gypsy 17561 18370 629 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 128927 129103 139 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 129102 131987 2441 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 1299484 1301928 1966 - . . scaffold1179 GLEAN mRNA 1286843 1305972 0.887369 + . ID=CGI_10027419; scaffold1187 WUBlastX LTR_Gypsy 48510 48653 41 + . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX LTR_Gypsy 48635 49507 488 + . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX LTR_Gypsy 49908 51533 1503 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy 191636 195115 2993 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy 195126 195335 93 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 50375 53437 2559 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Gypsy 931880 933208 1266 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 933494 933874 152 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 933888 934400 280 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold290 WUBlastX LTR_Gypsy 210465 210923 133 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 210911 213898 2592 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LTR_Gypsy 870825 872909 1818 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 65540 66088 227 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 66078 66221 81 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 45774 46115 192 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 46114 46215 69 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 46235 46342 44 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 46320 46523 105 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 47912 48787 802 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 49212 49388 31 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LTR_Gypsy 86065 86145 25 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 86151 88502 1891 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold42948 WUBlastX LTR_Gypsy 151805 153955 1862 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 287454 290309 2337 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_Gypsy 131446 133380 1708 + . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LTR_Gypsy 20247 20996 347 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 180638 180850 158 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 180834 181775 521 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 181784 182713 980 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 182716 184548 1381 + . . . . . -1 -1 -1 . . . scaffold38292 WUBlastX LTR_Gypsy 13840 16692 2453 + . . . . . -1 -1 -1 . . . scaffold38292 WUBlastX LTR_Gypsy 16691 17137 357 + . . . . . -1 -1 -1 . . . scaffold38292 WUBlastX LTR_Gypsy 17145 17531 84 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Gypsy 667329 670481 2596 + . . scaffold1703 GLEAN mRNA 642760 671813 0.998976 - . ID=CGI_10023072; scaffold42112 WUBlastX LTR_Gypsy 64490 67600 2500 - . . . . . -1 -1 -1 . . . scaffold439 WUBlastX LTR_Gypsy 31325 35101 3204 - . . . . . -1 -1 -1 . . . C32150 WUBlastX LTR_Gypsy 3521 7393 3204 + . . . . . -1 -1 -1 . . . C36038 WUBlastX LTR_Gypsy 16401 17564 1027 - . . . . . -1 -1 -1 . . . C36038 WUBlastX LTR_Gypsy 18391 20265 1474 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 128281 128985 405 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 132742 132939 78 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 1298091 1299542 1173 - . . scaffold1179 GLEAN mRNA 1286843 1305972 0.887369 + . ID=CGI_10027419; scaffold1187 WUBlastX LTR_Gypsy 48265 48561 107 + . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX LTR_Gypsy 51539 52525 720 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy 195126 195497 64 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 50344 50466 29 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 53433 54209 522 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Gypsy 930589 931887 1104 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 933213 933512 292 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold290 WUBlastX LTR_Gypsy 210014 210373 248 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LTR_Gypsy 872906 874723 1433 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 62511 63899 1140 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 63740 65761 1636 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 66078 66260 68 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 45565 45807 104 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 46528 47982 1372 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 48784 49248 344 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LTR_Gypsy 89055 89894 605 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold419 WUBlastX LTR_Gypsy 1252393 1256256 3243 - . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX LTR_Gypsy 153958 155649 1288 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 128384 132238 2928 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 285238 289116 3056 - . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LTR_Gypsy 253168 257040 3245 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_Gypsy 130062 131468 946 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_Gypsy 133385 133813 214 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 290305 290877 511 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 290832 291281 205 + . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LTR_Gypsy 17180 19801 2434 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LTR_Gypsy 19798 20214 386 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LTR_Gypsy 188764 192702 3249 + . . scaffold189 GLEAN mRNA 162558 220166 0.999165 - . ID=CGI_10018675; scaffold43130 WUBlastX LTR_Gypsy 212984 213121 102 + . . . . . -1 -1 -1 . . . scaffold43130 WUBlastX LTR_Gypsy 213870 216419 2164 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Gypsy 23003 25285 1802 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LTR_Gypsy 32468 33091 354 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LTR_Gypsy 33075 34598 1468 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LTR_Gypsy 34535 36280 1290 - . . . . . -1 -1 -1 . . . scaffold39526 WUBlastX LTR_Gypsy 38923 42963 3166 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Gypsy 252457 254730 1517 + . . . . . -1 -1 -1 . . . scaffold40994 WUBlastX LTR_Gypsy 67732 71721 3039 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LTR_Gypsy 4743 5915 890 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LTR_Gypsy 7391 8269 502 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LTR_Gypsy 8248 8382 53 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LTR_Gypsy 752142 752501 306 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LTR_Gypsy 752480 755170 1940 + . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LTR_Gypsy 17041 20997 3602 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX LTR_Gypsy 215796 218222 1737 + . . scaffold1754 GLEAN mRNA 216741 233286 0.492638 + . ID=CGI_10009584; scaffold487 WUBlastX LTR_Gypsy 432993 436949 3602 - . . scaffold487 GLEAN mRNA 428341 441144 1 + . ID=CGI_10017053; scaffold39998 WUBlastX LTR_Gypsy 5295 9287 2756 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LTR_Gypsy 489636 494306 3134 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LTR_Gypsy 36288 36503 134 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_Gypsy 128707 132669 2991 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 164122 168057 2973 + . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LTR_Gypsy 100758 104693 2986 - . . scaffold663 GLEAN mRNA 100296 104456 0.999692 - . ID=CGI_10005264; scaffold654 WUBlastX LTR_Gypsy 59152 61050 1417 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX LTR_Gypsy 57719 59119 1311 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 226396 230310 3229 - . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LTR_Gypsy 161507 165268 3345 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 31591 32457 528 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 32571 35924 2809 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 40035 40277 181 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 40226 41227 975 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 41239 42708 1406 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 42980 43483 480 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold1754 WUBlastX LTR_Gypsy 218225 219802 1302 + . . scaffold1754 GLEAN mRNA 216741 233286 0.492638 + . ID=CGI_10009584; scaffold221 WUBlastX LTR_Gypsy 114293 114865 451 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Gypsy 114909 117332 2150 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Gypsy 117334 118191 526 + . . . . . -1 -1 -1 . . . scaffold38804 WUBlastX LTR_Gypsy 49141 53124 3292 - . . . . . -1 -1 -1 . . . scaffold42208 WUBlastX LTR_Gypsy 116531 119818 2876 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Gypsy 318706 321819 2618 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Gypsy 321804 322070 31 + . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LTR_Gypsy 128292 129866 1128 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy 2749 3687 699 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy 3659 5287 1699 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 118287 118949 427 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 118996 120039 705 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 119904 120995 864 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 121885 122241 83 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX LTR_Gypsy 1395 5321 3280 - . . . . . -1 -1 -1 . . . scaffold1235 WUBlastX LTR_Gypsy 24706 26100 905 + . . scaffold1235 GLEAN mRNA 24706 26124 0.999999 + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 24706 26100 905 + . . scaffold1235 GLEAN mRNA 16837 34725 0.738057 - . ID=CGI_10011828; scaffold1235 WUBlastX LTR_Gypsy 26114 28954 2574 + . . scaffold1235 GLEAN mRNA 24706 26124 0.999999 + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 26114 28954 2574 + . . scaffold1235 GLEAN mRNA 16837 34725 0.738057 - . ID=CGI_10011828; scaffold363 WUBlastX LTR_Gypsy 266277 267992 1087 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 267956 269311 1189 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 269295 270203 715 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LTR_Gypsy 755149 755622 463 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LTR_Gypsy 755535 756134 217 + . . . . . -1 -1 -1 . . . scaffold1489 WUBlastX DNA_Helitron 67890 71072 1724 - . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX DNA_Helitron 29385 30800 309 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_Helitron 76796 81577 2805 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_Helitron 82726 84006 268 - . . . . . -1 -1 -1 . . . scaffold35974 WUBlastX DNA_Helitron 12861 14105 200 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Helitron 275877 277040 594 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Helitron 277040 277450 147 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Helitron 270088 271497 224 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Helitron 272296 272991 442 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX DNA_Helitron 171725 172471 73 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX DNA_Helitron 172677 174986 1015 + . . . . . -1 -1 -1 . . . scaffold1045 WUBlastX RC_Helitron 90559 92196 271 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX RC_Helitron 60844 61527 36 + . . scaffold1833 GLEAN mRNA 49110 69658 0.917044 + . ID=CGI_10007300; scaffold338 WUBlastX RC_Helitron 83455 84279 50 - . . . . . -1 -1 -1 . . . scaffold1481 WUBlastX RC_Helitron 55519 59364 2340 - . . . . . -1 -1 -1 . . . scaffold1481 WUBlastX RC_Helitron 59367 62156 1323 - . . . . . -1 -1 -1 . . . scaffold1489 WUBlastX RC_Helitron 64458 70424 2978 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX RC_Helitron 62251 68409 3041 + . . scaffold1833 GLEAN mRNA 49110 69658 0.917044 + . ID=CGI_10007300; scaffold35974 WUBlastX RC_Helitron 12348 13838 301 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX RC_Helitron 253605 260255 2971 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX RC_Helitron 271471 272925 441 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX RC_Helitron 272770 275883 2191 + . . . . . -1 -1 -1 . . . scaffold38524 WUBlastX RC_Helitron 42719 45241 1372 - . . . . . -1 -1 -1 . . . scaffold38524 WUBlastX RC_Helitron 47317 49167 459 - . . . . . -1 -1 -1 . . . scaffold39464 WUBlastX RC_Helitron 19940 21601 300 + . . . . . -1 -1 -1 . . . scaffold39724 WUBlastX RC_Helitron 28094 28858 216 + . . scaffold39724 GLEAN mRNA 9052 37427 0.859839 + . ID=CGI_10003578; scaffold39724 WUBlastX RC_Helitron 30866 36187 3161 + . . scaffold39724 GLEAN mRNA 9052 37427 0.859839 + . ID=CGI_10003578; scaffold490 WUBlastX RC_Helitron 154418 155941 301 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX RC_Helitron 226931 228001 745 + . . . . . -1 -1 -1 . . . scaffold796 WUBlastX RC_Helitron 48927 50150 177 - . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX RC_Helitron 29256 30014 102 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX RC_Helitron 83368 84138 95 - . . . . . -1 -1 -1 . . . scaffold36886 WUBlastX RC_Helitron 7145 7981 154 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX RC_Helitron 153194 155119 520 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX RC_Helitron 175907 179956 2620 + . . . . . -1 -1 -1 . . . scaffold1045 WUBlastX RC_Helitron 86197 91923 3729 - . . . . . -1 -1 -1 . . . scaffold1045 WUBlastX RC_Helitron 92230 92838 192 - . . . . . -1 -1 -1 . . . scaffold1489 WUBlastX RC_Helitron 65145 70205 3204 - . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX RC_Helitron 30711 36635 2992 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX RC_Helitron 81281 82099 469 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX RC_Helitron 82093 83376 258 - . . . . . -1 -1 -1 . . . scaffold35974 WUBlastX RC_Helitron 14604 19673 3552 + . . . . . -1 -1 -1 . . . scaffold36886 WUBlastX RC_Helitron 8951 14548 3671 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX RC_Helitron 255663 260243 2981 + . . . . . -1 -1 -1 . . . scaffold39464 WUBlastX RC_Helitron 21296 25432 2603 + . . . . . -1 -1 -1 . . . scaffold39464 WUBlastX RC_Helitron 25428 27080 857 + . . . . . -1 -1 -1 . . . scaffold39724 WUBlastX RC_Helitron 28931 30577 496 + . . scaffold39724 GLEAN mRNA 9052 37427 0.859839 + . ID=CGI_10003578; scaffold490 WUBlastX RC_Helitron 149357 154402 3392 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX RC_Helitron 92175 93434 794 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX RC_Helitron 43737 49610 3651 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 85967 86179 55 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 86419 88557 1137 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 88635 88934 47 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 88913 89554 476 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 89779 91023 818 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 583450 585594 1010 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 585612 588923 1878 - . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX RC_Helitron 61183 66630 3045 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX RC_Helitron 400615 406170 2876 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX RC_Helitron 5865 5915 25 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX RC_Helitron 6705 9761 1896 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX RC_Helitron 9411 12065 1241 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX RC_Helitron 191706 197198 3201 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1652 WUBlastX RC_Helitron 226231 231123 2518 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold1652 WUBlastX RC_Helitron 230605 231291 381 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold1741 WUBlastX RC_Helitron 19594 24891 3183 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX RC_Helitron 201426 204014 1365 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX RC_Helitron 203589 206645 1892 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX RC_Helitron 1327945 1330533 1365 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX RC_Helitron 1330108 1333164 1892 - . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX RC_Helitron 47767 49692 974 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX RC_Helitron 49688 51361 1059 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX RC_Helitron 51355 52287 507 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX RC_Helitron 52287 53330 342 + . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX RC_Helitron 115909 116046 42 - . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX RC_Helitron 116084 117067 103 - . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX RC_Helitron 117115 117996 630 - . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX RC_Helitron 118674 121460 1783 - . . . . . -1 -1 -1 . . . scaffold532 WUBlastX RC_Helitron 278837 281425 1365 - . . scaffold532 GLEAN mRNA 274363 287689 0.998459 - . ID=CGI_10012533; scaffold532 WUBlastX RC_Helitron 281000 284056 1892 - . . scaffold532 GLEAN mRNA 274363 287689 0.998459 - . ID=CGI_10012533; scaffold75 WUBlastX RC_Helitron 86052 87269 475 - . . . . . -1 -1 -1 . . . scaffold75 WUBlastX RC_Helitron 87274 91374 2616 - . . . . . -1 -1 -1 . . . scaffold36886 WUBlastX RC_Helitron 7430 8287 228 + . . . . . -1 -1 -1 . . . scaffold36886 WUBlastX RC_Helitron 8171 9385 228 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX RC_Helitron 252636 255083 266 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX RC_Helitron 269908 270738 285 + . . . . . -1 -1 -1 . . . scaffold38524 WUBlastX RC_Helitron 45213 47312 1618 - . . . . . -1 -1 -1 . . . scaffold39724 WUBlastX RC_Helitron 27755 28681 271 + . . scaffold39724 GLEAN mRNA 9052 37427 0.859839 + . ID=CGI_10003578; scaffold712 WUBlastX RC_Helitron 222080 222904 276 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX RC_Helitron 224994 226931 1511 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX RC_Helitron 171872 172549 280 + . . . . . -1 -1 -1 . . . scaffold1479 WUBlastX LTR_Gypsy 4140 4916 237 + . . . . . -1 -1 -1 . . . scaffold1479 WUBlastX LTR_Gypsy 5605 7704 1934 + . . . . . -1 -1 -1 . . . scaffold1479 WUBlastX LTR_Gypsy 4910 5629 777 + . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_RTE-BovB 190608 191834 1140 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_RTE-BovB 191822 193048 946 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_RTE-BovB 192959 193369 321 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_RTE-BovB 193327 193890 380 - . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_RTE-BovB 3815 4720 1043 - . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_RTE-BovB 4723 5082 365 - . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_RTE-BovB 5025 6128 1239 - . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_RTE-BovB 6898 7140 270 - . . . . . -1 -1 -1 . . . scaffold1770 WUBlastX LINE_RTE-BovB 1229 2155 1027 + . . . . . -1 -1 -1 . . . scaffold1770 WUBlastX LINE_RTE-BovB 2136 3779 2039 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-BovB 226928 227125 118 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-BovB 227098 228027 1055 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-BovB 227979 228170 136 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-BovB 228177 229424 1596 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-BovB 229424 229933 572 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-BovB 229892 230098 108 + . . . . . -1 -1 -1 . . . C27680 WUBlastX DNA_IS 1815 4841 5072 + . . . . . -1 -1 -1 . . . scaffold1063 WUBlastX LTR_Copia 272 1417 1517 + . . . . . -1 -1 -1 . . . scaffold1063 WUBlastX LTR_Copia 1428 2984 2212 + . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 121395 121439 23 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 124945 125106 67 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Gypsy-Troyk 487295 488326 943 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy-Troyk 488264 490780 2601 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy-Troyk 490887 491471 473 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy-Troyk 491456 491980 168 + . . scaffold163 GLEAN mRNA 491676 503218 1 - . ID=CGI_10018631; scaffold163 WUBlastX LTR_Gypsy-Troyk 491456 491980 168 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold1705 WUBlastX LTR_Gypsy-Troyk 122108 122461 316 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 122760 124946 1824 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 125109 125411 236 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 125856 126257 60 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 125905 126093 238 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Gypsy-Troyk 405100 405810 720 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Gypsy-Troyk 406027 406473 406 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Gypsy-Troyk 406458 407477 904 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Gypsy-Troyk 407441 407986 118 + . . scaffold1900 GLEAN mRNA 407729 407989 0.695611 + . ID=CGI_10017348; scaffold331 WUBlastX LTR_Gypsy-Troyk 24623 28141 3363 + . . . . . -1 -1 -1 . . . scaffold36342 WUBlastX LTR_Gypsy-Troyk 16358 17287 901 + . . . . . -1 -1 -1 . . . scaffold36342 WUBlastX LTR_Gypsy-Troyk 17615 19942 2394 + . . . . . -1 -1 -1 . . . scaffold36342 WUBlastX LTR_Gypsy-Troyk 19950 20861 549 + . . . . . -1 -1 -1 . . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 4616 5056 384 + . . . . . -1 -1 -1 . . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 5846 5971 115 + . . . . . -1 -1 -1 . . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 6458 6913 554 + . . . . . -1 -1 -1 . . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 6910 8052 1101 + . . . . . -1 -1 -1 . . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 8042 8170 86 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy-Troyk 53831 54016 57 - . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy-Troyk 53992 55905 1576 - . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy-Troyk 56206 56847 477 - . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy-Troyk 56892 57095 248 - . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy-Troyk 57095 57631 537 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX RC_Helitron 367149 371852 2664 - . . scaffold1462 GLEAN mRNA 365331 374649 0.539656 - . ID=CGI_10014387; scaffold1462 WUBlastX RC_Helitron 367149 371852 2664 - . . scaffold1462 GLEAN mRNA 348326 383431 0.995853 + . ID=CGI_10014386; scaffold1462 WUBlastX RC_Helitron 372375 372995 374 - . . scaffold1462 GLEAN mRNA 365331 374649 0.539656 - . ID=CGI_10014387; scaffold1462 WUBlastX RC_Helitron 372375 372995 374 - . . scaffold1462 GLEAN mRNA 348326 383431 0.995853 + . ID=CGI_10014386; scaffold22 WUBlastX RC_Helitron 1821592 1822299 368 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX RC_Helitron 1822999 1825749 1796 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX RC_Helitron 1825950 1827719 748 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Caulimoviru 1210280 1210939 46 + . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LINE_RTE-BovB 37896 38186 58 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LINE_Penelope 2029 2385 27 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX DNA_En-Spm 521534 521776 42 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX DNA_Chapaev 156704 156916 25 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy-Cigr 581435 581674 54 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LTR_Gypsy-Cigr 395602 395916 32 + . . . . . -1 -1 -1 . . . C32778 WUBlastX LTR_Gypsy-Cigr 7163 7390 59 - . . . . . -1 -1 -1 . . . scaffold35466 WUBlastX LINE_L1 15244 15429 21 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Copia 87681 87983 66 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Copia 184820 184975 25 - . . scaffold351 GLEAN mRNA 182214 186264 0.847521 + . ID=CGI_10022595; scaffold1697 WUBlastX LTR_Copia 12856 13128 52 + . . scaffold1697 GLEAN mRNA 140 13575 0.983491 + . ID=CGI_10007876; scaffold733 WUBlastX LTR_Copia 40894 40989 26 + . . scaffold733 GLEAN mRNA 37672 49158 0.939016 - . ID=CGI_10025863; scaffold40680 WUBlastX LTR_Copia 77764 78234 38 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Copia 30154 30396 60 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Copia 190946 191086 26 + . . scaffold1017 GLEAN mRNA 181799 198515 0.999675 + . ID=CGI_10024986; scaffold280 WUBlastX LTR_Copia 539656 539685 20 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Copia 599244 599672 21 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_CR1 272377 272619 61 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Pao 207021 207233 65 + . . . . . -1 -1 -1 . . . scaffold491 WUBlastX LTR_Pao 45833 46468 22 + . . scaffold491 GLEAN mRNA 37754 47413 0.304389 + . ID=CGI_10006649; scaffold365 WUBlastX LTR_Pao 573585 573674 20 + . . scaffold365 GLEAN mRNA 570241 589384 0.479657 + . ID=CGI_10022743; scaffold39240 WUBlastX LTR_Pao 51457 51600 20 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Pao 616950 617033 36 + . . scaffold1403 GLEAN mRNA 615329 620752 0.997653 - . ID=CGI_10020190; scaffold1403 WUBlastX LTR_Pao 617036 617089 27 + . . scaffold1403 GLEAN mRNA 615329 620752 0.997653 - . ID=CGI_10020190; scaffold352 WUBlastX LTR_Pao 153611 154693 22 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold42558 WUBlastX LTR_Pao 132641 133072 25 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Pao 292033 292437 23 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Tc1 422330 422572 23 + . . scaffold145 GLEAN mRNA 417763 440555 0.648525 - . ID=CGI_10026557; scaffold724 WUBlastX LTR_Gypsy 199999 200319 42 + . . scaffold724 GLEAN mRNA 198862 200526 0.996199 + . ID=CGI_10011500; scaffold1711 WUBlastX LINE_L1 346840 346986 53 + . . scaffold1711 GLEAN mRNA 341811 351623 0.999555 + . ID=CGI_10015612; scaffold101 WUBlastX DNA_TcMar-Marin 346501 346674 54 - . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX DNA_hAT-Tip100 121246 121530 56 + . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold88 WUBlastX DNA_hAT-Tip100 5569 5904 39 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold664 WUBlastX DNA_hAT-Tip100 550878 551153 57 + . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold35960 WUBlastX DNA_hAT-Tip100 11204 11455 35 + . . scaffold35960 GLEAN mRNA 415 14469 0.999984 - . ID=CGI_10001702; scaffold280 WUBlastX DNA_PiggyBac 361472 361888 46 + . . . . . -1 -1 -1 . . . scaffold40164 WUBlastX LINE_L1 8043 8123 33 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold1186 WUBlastX DNA_TcMar-Ant1 140677 140949 22 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_TcMar-Ant1 140978 141118 41 + . . . . . -1 -1 -1 . . . scaffold432 WUBlastX DNA_hAT 369776 370048 48 + . . scaffold432 GLEAN mRNA 366486 371092 0.544852 + . ID=CGI_10023101; scaffold406 WUBlastX LINE_Tad1? 587335 587580 31 + . . . . . -1 -1 -1 . . . scaffold1121 WUBlastX DNA_hAT-Tip100 140644 140964 46 - . . scaffold1121 GLEAN mRNA 136074 147948 0.722367 - . ID=CGI_10006507; scaffold57 WUBlastX DNA_TcMar-Tc1 59666 59938 71 - . . scaffold57 GLEAN mRNA 58352 60491 0.999999 - . ID=CGI_10020536; scaffold40388 WUBlastX LTR_DIRS 16936 17109 21 - . . scaffold40388 GLEAN mRNA 12767 20177 0.999676 - . ID=CGI_10004075; scaffold1634 WUBlastX LTR_Copia 100090 100215 36 - . . scaffold1634 GLEAN mRNA 100114 110322 0.998817 - . ID=CGI_10005154; scaffold152 WUBlastX LTR_Copia 317541 317987 36 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Gypsy 109898 109978 32 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_CR1 750424 750552 53 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_CR1 132779 133171 28 - . . scaffold631 GLEAN mRNA 131392 145592 0.831917 - . ID=CGI_10014172; scaffold34942 WUBlastX LINE_CR1 20503 20940 33 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_L2 246875 247009 45 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LINE_CR1-L2 112148 112327 44 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_CR1 572166 572369 60 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_CR1 133191 133277 36 - . . . . . -1 -1 -1 . . . scaffold369 WUBlastX LINE_CR1 27606 27719 65 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L2 296623 296763 22 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_L2 89673 89870 26 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_CR1 927576 927737 28 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L2 542944 543159 57 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_L2 235298 235408 43 - . . scaffold950 GLEAN mRNA 224684 252187 0.638871 - . ID=CGI_10022925; scaffold716 WUBlastX LINE_CR1 218910 218978 21 + . . . . . -1 -1 -1 . . . scaffold42096 WUBlastX LINE_CR1 105776 105844 23 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold549 WUBlastX LINE_CR1 85551 85910 34 - . . . . . -1 -1 -1 . . . scaffold38382 WUBlastX LINE_CR1 20419 20487 39 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_CR1 732438 732479 22 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LINE_L2 248832 248972 53 + . . . . . -1 -1 -1 . . . C33496 WUBlastX LINE_L2 5255 5404 36 + . . . . . -1 -1 -1 . . . scaffold1001 WUBlastX LINE_CR1 25884 26021 26 + . . scaffold1001 GLEAN mRNA 4766 38685 0.672255 - . ID=CGI_10007116; scaffold998 WUBlastX LINE_L2 138693 138809 26 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_CR1 159595 159900 46 - . . . . . -1 -1 -1 . . . scaffold998 WUBlastX LINE_L2 127657 128046 25 + . . scaffold998 GLEAN mRNA 116508 131912 0.996071 - . ID=CGI_10006465; scaffold308 WUBlastX LINE_CR1-L2 278670 278831 40 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_CR1-L2 120400 120582 62 - . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LINE_L2 21868 22275 49 - . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LINE_CR1 35424 35936 22 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_CR1 572079 572372 42 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_CR1 8371 8922 20 - . . . . . -1 -1 -1 . . . C34546 WUBlastX LINE_CR1 16370 16801 24 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_CR1-L2 182095 182274 49 + . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; C26338 WUBlastX LINE_L2 2775 3152 25 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_CR1 298950 299108 26 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L2 67285 67473 40 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_CR1 128840 128986 48 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX LINE_CR1-L2 23100 23303 59 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LINE_CR1-L2 217037 217384 29 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1 35255 35530 57 + . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold975 WUBlastX LINE_CR1-L2 21339 21554 21 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_CR1-L2 98628 98927 36 - . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_CR1 254045 254134 30 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LINE_L2 356184 356534 35 + . . scaffold513 GLEAN mRNA 355722 357536 0.999999 + . ID=CGI_10022151; C29774 WUBlastX LINE_CR1 245 427 59 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_CR1 93209 93619 39 + . . . . . -1 -1 -1 . . . C34458 WUBlastX LINE_CR1 857 961 22 - . . . . . -1 -1 -1 . . . scaffold36816 WUBlastX LINE_L2 6877 7203 39 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_CR1 813864 814094 61 - . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LTR_Gypsy 88085 88309 73 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 83125 83664 38 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Gypsy 27477 27557 29 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1147584 1148009 48 - . . scaffold601 GLEAN mRNA 1147404 1147721 0.999451 - . ID=CGI_10026859; scaffold62 WUBlastX LTR_Gypsy 115676 115810 73 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 373578 373793 32 - . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX LTR_Gypsy 60849 61178 39 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_Gypsy-Cigr 50688 50786 71 - . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 134003 134056 28 + . . scaffold1217 GLEAN mRNA 132340 134181 0.739794 + . ID=CGI_10009995; scaffold1217 WUBlastX LTR_Gypsy-Cigr 134139 134561 48 + . . scaffold1217 GLEAN mRNA 132340 134181 0.739794 + . ID=CGI_10009995; scaffold1424 WUBlastX LTR_Gypsy-Cigr 81332 81406 23 + . . . . . -1 -1 -1 . . . scaffold38058 WUBlastX LTR_Gypsy 4495 4710 23 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold852 WUBlastX LTR_Gypsy 62356 62607 73 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 217126 217272 36 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 78853 79143 65 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Gypsy 115189 115410 48 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 139988 140209 48 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold714 WUBlastX LTR_Gypsy 334249 334470 65 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 501393 501554 29 - . . scaffold363 GLEAN mRNA 500751 501623 1 - . ID=CGI_10019310; scaffold62 WUBlastX LTR_Gypsy 115697 115819 76 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 93754 93936 55 + . . . . . -1 -1 -1 . . . scaffold148 WUBlastX LTR_Gypsy 100235 100552 45 + . . . . . -1 -1 -1 . . . scaffold38704 WUBlastX LTR_Gypsy 53167 53376 53 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 20893 21411 36 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 243844 243939 42 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Gypsy 171797 171931 80 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 238876 239493 26 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 464045 464302 30 - . . scaffold695 GLEAN mRNA 462757 466926 0.17973 - . ID=CGI_10023290; scaffold36170 WUBlastX LTR_Gypsy 11402 11674 62 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_En-Spm 1420377 1420592 26 + . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX DNA_En-Spm 72694 72918 31 - . . scaffold1442 GLEAN mRNA 72882 75260 0.853071 + . ID=CGI_10003587; scaffold1424 WUBlastX LTR_ERV1 21301 21492 26 + . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_RTE-BovB 111738 111821 26 - . . . . . -1 -1 -1 . . . scaffold407 WUBlastX LINE_RTE 14000 14137 35 + . . scaffold407 GLEAN mRNA 13072 17204 0.999998 + . ID=CGI_10002626; scaffold926 WUBlastX LTR_ERV1 48672 49151 20 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-BovB 425648 425776 58 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 552552 552761 23 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LINE_L2 139518 139784 55 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L2 400249 400689 34 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LINE_L2 17582 17728 20 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold1314 WUBlastX LINE_L2 140744 140971 60 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L2 142728 142955 60 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 614811 614900 30 - . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX LINE_L2 158428 158571 33 + . . . . . -1 -1 -1 . . . C29974 WUBlastX LINE_L2 1849 1914 30 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_L2 195440 195577 38 + . . scaffold1703 GLEAN mRNA 194376 196581 0.999238 + . ID=CGI_10023047; scaffold444 WUBlastX LINE_L2 416636 417055 66 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L2 169232 169513 49 + . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LINE_L2 19037 19168 20 + . . . . . -1 -1 -1 . . . C29774 WUBlastX LINE_L2 272 457 54 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L2 16436 17203 21 + . . scaffold1581 GLEAN mRNA 16229 17959 0.999661 + . ID=CGI_10005309; scaffold1350 WUBlastX LINE_L2 1939 2025 25 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L2 670070 670291 64 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold36494 WUBlastX DNA_Crypton 14079 14297 66 - . . . . . -1 -1 -1 . . . scaffold603 WUBlastX DNA_Crypton 78288 78551 62 + . . scaffold603 GLEAN mRNA 77256 78707 0.999999 + . ID=CGI_10009899; scaffold1711 WUBlastX LINE_L2 320510 320725 27 + . . . . . -1 -1 -1 . . . C34116 WUBlastX LTR_Gypsy 2814 3314 36 - . . . . . -1 -1 -1 . . . C389 WUBlastX LTR_DIRS 3 101 34 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 208850 209113 61 - . . scaffold1703 GLEAN mRNA 209003 209413 0.77673 - . ID=CGI_10023048; scaffold773 WUBlastX LTR_Ngaro 20539 20832 32 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LTR_DIRS 106762 107124 29 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold42306 WUBlastX LTR_DIRS 123483 123761 52 - . . scaffold42306 GLEAN mRNA 115556 155578 0.855145 + . ID=CGI_10006611; scaffold1180 WUBlastX LTR_DIRS 23575 23790 44 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold602 WUBlastX LTR_Ngaro 79571 79666 55 + . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX LTR_DIRS 62642 62836 47 + . . scaffold1656 GLEAN mRNA 45907 73911 0.308617 - . ID=CGI_10006142; scaffold279 WUBlastX LTR_DIRS 179795 179968 43 + . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LTR_Ngaro 38693 39220 42 - . . scaffold444 GLEAN mRNA 38666 39079 0.733495 - . ID=CGI_10017431; scaffold1551 WUBlastX LTR_Ngaro 123858 124169 33 - . . . . . -1 -1 -1 . . . scaffold42726 WUBlastX LTR_DIRS? 125296 125580 31 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_DIRS 171640 171879 29 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_DIRS 212490 212564 39 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_DIRS 810549 810635 22 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LTR_DIRS 251856 252068 60 - . . . . . -1 -1 -1 . . . scaffold42604 WUBlastX LTR_DIRS 28589 29245 22 + . . scaffold42604 GLEAN mRNA 28580 37433 1 + . ID=CGI_10007312; scaffold678 WUBlastX LTR_DIRS 450083 450448 33 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_Jockey 992080 992625 33 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_Jockey 338282 338452 45 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1737 WUBlastX LINE_Jockey 26705 26875 45 - . . . . . -1 -1 -1 . . . scaffold399 WUBlastX LINE_DRE 218859 219356 24 + . . scaffold399 GLEAN mRNA 211507 220094 0.999351 + . ID=CGI_10009289; scaffold1900 WUBlastX LTR_Ngaro 381029 381190 59 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_R2-Hero 324237 324596 64 + . . scaffold445 GLEAN mRNA 299978 341164 0.811094 - . ID=CGI_10019444; scaffold433 WUBlastX LINE_R2-Hero 889343 889486 55 + . . scaffold433 GLEAN mRNA 884339 892150 0.999994 + . ID=CGI_10027099; scaffold433 WUBlastX LINE_R2-Hero 889492 889569 21 + . . scaffold433 GLEAN mRNA 884339 892150 0.999994 + . ID=CGI_10027099; scaffold644 WUBlastX LINE_R2-Hero 49909 50043 70 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_R2-Hero 731672 731728 20 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_R2-Hero 731952 732038 20 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_R2-Hero 732034 732210 29 + . . . . . -1 -1 -1 . . . scaffold43084 WUBlastX LINE_R2-Hero 144785 145222 23 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX RC_Helitron 368973 369323 46 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX RC_Helitron 47715 47879 35 - . . scaffold1199 GLEAN mRNA 46410 49371 0.592263 - . ID=CGI_10005923; scaffold1876 WUBlastX RC_Helitron 97097 97630 58 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX RC_Helitron 212460 212699 62 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX RC_Helitron 52001 52123 82 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX RC_Helitron 222168 222251 22 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 222783 222857 36 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold38900 WUBlastX DNA_Harbinger 48942 49109 36 - . . scaffold38900 GLEAN mRNA 46553 49675 0.811602 - . ID=CGI_10003041; scaffold1036 WUBlastX DNA_Harbinger 197207 197386 37 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Harbinger 517725 517955 53 + . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX DNA_hAT-Tip100 216914 217060 53 - . . . . . -1 -1 -1 . . . scaffold1226 WUBlastX DNA_hAT-Tip100 37139 37384 45 - . . scaffold1226 GLEAN mRNA 32404 37153 0.999547 - . ID=CGI_10002682; scaffold169 WUBlastX DNA_hAT-Ac 806113 806412 43 - . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX DNA_hAT-Tip100 146239 146631 45 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_hAT-Tag1 591590 591760 49 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_hAT-Tip100 269636 269848 67 - . . scaffold48 GLEAN mRNA 269582 278599 0.988048 - . ID=CGI_10023891; scaffold38576 WUBlastX DNA_hAT-Tip100 40258 40728 40 + . . . . . -1 -1 -1 . . . scaffold292 WUBlastX DNA_hAT-Ac 8573 8698 75 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold1010 WUBlastX DNA_hAT-Tip100 42759 43025 48 - . . . . . -1 -1 -1 . . . scaffold1726 WUBlastX DNA_hAT-Tip100 232997 233272 54 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_hAT-Tip100 194504 194590 25 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; C36530 WUBlastX DNA_hAT-hATw 34187 34636 42 + . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LTR_ERV1 146907 147110 26 + . . . . . -1 -1 -1 . . . scaffold1485 WUBlastX LTR_ERV1 36694 36921 52 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_Jockey 166772 167113 29 + . . . . . -1 -1 -1 . . . C22302 WUBlastX LINE_I 15 203 22 + . . . . . -1 -1 -1 . . . scaffold1206 WUBlastX LINE_I 29531 29665 53 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_I 101 289 22 - . . . . . -1 -1 -1 . . . scaffold1641 WUBlastX LINE_Jockey 233236 233415 46 - . . . . . -1 -1 -1 . . . scaffold34302 WUBlastX DNA_IS4EU 13321 13455 32 + . . scaffold34302 GLEAN mRNA 961 13534 0.696945 + . ID=CGI_10001259; scaffold485 WUBlastX DNA_IS4EU 826770 826895 49 + . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold1241 WUBlastX DNA_IS4EU 209089 209517 26 + . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_IS4EU 61058 61255 32 - . . . . . -1 -1 -1 . . . C34110 WUBlastX DNA_IS4EU 16867 17076 32 - . . . . . -1 -1 -1 . . . scaffold42264 WUBlastX DNA_IS4EU 56214 56336 56 - . . . . . -1 -1 -1 . . . C29202 WUBlastX DNA_IS4EU 103 462 42 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX DNA_IS4EU 49523 49663 29 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_IS4EU 550977 551453 45 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold113 WUBlastX DNA_IS4EU 561522 561800 29 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX DNA_IS4EU 209806 210138 33 - . . . . . -1 -1 -1 . . . scaffold1840 WUBlastX DNA_IS4EU 131565 131696 30 - . . . . . -1 -1 -1 . . . scaffold1840 WUBlastX DNA_IS4EU 132067 132210 31 - . . . . . -1 -1 -1 . . . C30768 WUBlastX DNA_IS4EU 7820 7927 45 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_IS4EU 7072 7308 22 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX DNA_IS4EU 605184 605582 64 + . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold1362 WUBlastX DNA_IS4EU 572964 573362 64 - . . scaffold1362 GLEAN mRNA 572276 574419 0.938876 - . ID=CGI_10023946; scaffold381 WUBlastX DNA_IS4EU 1994 2359 40 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX DNA_IS4EU 428916 429017 27 - . . scaffold44054 GLEAN mRNA 428351 451614 0.884147 - . ID=CGI_10016180; scaffold1327 WUBlastX DNA_Kolobok-IS4 346612 346716 38 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_Kolobok-IS4 50220 50483 71 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LINE_L1 175483 175956 24 - . . scaffold1678 GLEAN mRNA 153695 176010 0.290685 - . ID=CGI_10010386; scaffold1599 WUBlastX LINE_L1 809433 809891 67 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L1 446318 446872 22 - . . scaffold365 GLEAN mRNA 445580 454152 1 - . ID=CGI_10022738; scaffold37712 WUBlastX LTR_Gypsy 37291 37437 63 - . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold1403 WUBlastX LTR_Gypsy 194324 194416 24 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1606452 1606601 35 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold43708 WUBlastX LTR_Gypsy 61284 61529 56 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Gypsy 34957 35226 35 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Gypsy 22497 22943 76 + . . . . . -1 -1 -1 . . . scaffold39500 WUBlastX LTR_Gypsy 22729 23250 57 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Harbinger 71990 72202 69 + . . scaffold126 GLEAN mRNA 72071 89869 0.988186 + . ID=CGI_10019179; scaffold142 WUBlastX DNA_Harbinger 923910 924140 42 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 427547 427660 40 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 428331 428441 34 - . . . . . -1 -1 -1 . . . scaffold292 WUBlastX DNA_Harbinger 23605 23844 22 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold30682 WUBlastX DNA_Harbinger 1764 2015 62 - . . scaffold30682 GLEAN mRNA 363 3344 1 - . ID=CGI_10000658; scaffold370 WUBlastX DNA_Harbinger 807447 807614 58 + . . . . . -1 -1 -1 . . . scaffold582 WUBlastX DNA_Harbinger 29019 29225 59 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 141405 141551 57 - . . scaffold626 GLEAN mRNA 111038 155634 0.745946 - . ID=CGI_10019981; scaffold854 WUBlastX DNA_Harbinger 609734 609865 65 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Harbinger 42471 42767 66 - . . . . . -1 -1 -1 . . . scaffold707 WUBlastX DNA_Harbinger 48251 48412 40 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold1878 WUBlastX LTR_Gypsy 53050 53508 38 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 719596 719628 23 - . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX LTR_Gypsy 148030 148599 33 + . . . . . -1 -1 -1 . . . C26244 WUBlastX LTR_Gypsy 586 1047 32 - . . . . . -1 -1 -1 . . . C26244 WUBlastX LTR_Gypsy 988 1239 21 - . . . . . -1 -1 -1 . . . scaffold387 WUBlastX LTR_Gypsy 29058 29156 27 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold613 WUBlastX LTR_Gypsy 3208 3402 35 - . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX LTR_Gypsy 8941 9189 28 - . . . . . -1 -1 -1 . . . scaffold40196 WUBlastX LTR_Gypsy 58608 59168 52 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy 220883 221326 47 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 635005 635364 43 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LTR_Gypsy 382852 383589 32 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold339 WUBlastX LTR_Gypsy 120257 120778 26 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 41758 41898 59 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 178580 179125 52 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Gypsy 504986 505216 38 - . . . . . -1 -1 -1 . . . scaffold40828 WUBlastX LTR_Gypsy 57388 57657 39 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold490 WUBlastX LTR_Gypsy 129924 130358 23 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX DNA_Kolobok-IS4 691253 691552 23 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc1 262911 263018 70 - . . scaffold1024 GLEAN mRNA 251261 271480 0.999675 - . ID=CGI_10028529; scaffold38804 WUBlastX DNA_TcMar-Tc1 56224 56421 42 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_Jockey 525193 525276 26 + . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX DNA_TcMar-Tc2 27418 27621 71 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_L1 68240 68488 46 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1 738678 738800 34 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold1897 WUBlastX LINE_L2 445053 445490 22 - . . . . . -1 -1 -1 . . . scaffold559 WUBlastX DNA_Kolobok 41339 41494 37 - . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_Kolobok 79550 79786 48 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Merlin 80320 80490 63 + . . scaffold365 GLEAN mRNA 78147 85364 0.919357 - . ID=CGI_10022718; scaffold1796 WUBlastX LTR_ERV1 62595 63056 54 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Gypsy 477239 477280 30 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold1209 WUBlastX DNA_NOF 182081 182167 33 + . . . . . -1 -1 -1 . . . scaffold1804 WUBlastX DNA_NOF 169453 169593 32 + . . scaffold1804 GLEAN mRNA 167649 169662 1 + . ID=CGI_10013372; scaffold601 WUBlastX DNA_NOF 436348 436494 46 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX DNA_NOF? 704194 704520 40 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX DNA_MuDR 69232 69495 58 - . . scaffold170 GLEAN mRNA 33602 72151 0.952643 - . ID=CGI_10007431; scaffold1283 WUBlastX DNA_TcMar-Marin 249818 249931 46 + . . scaffold1283 GLEAN mRNA 240961 258563 0.432673 - . ID=CGI_10011796; scaffold1671 WUBlastX DNA_TcMar-Marin 65822 65995 68 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_Penelope 115968 116078 36 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_Penelope 995203 995364 46 - . . . . . -1 -1 -1 . . . scaffold1089 WUBlastX LINE_Penelope 65432 65740 30 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 268305 268559 40 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_Penelope 177467 177664 23 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_Penelope 482790 482999 42 + . . . . . -1 -1 -1 . . . scaffold40644 WUBlastX LINE_Penelope 77667 77867 41 + . . scaffold40644 GLEAN mRNA 74819 77768 0.999935 - . ID=CGI_10004306; scaffold41816 WUBlastX LINE_Penelope 41672 41857 31 - . . . . . -1 -1 -1 . . . scaffold42604 WUBlastX LINE_Penelope 176431 176718 44 - . . . . . -1 -1 -1 . . . scaffold1274 WUBlastX LINE_Penelope 2743 2970 23 - . . . . . -1 -1 -1 . . . scaffold366 WUBlastX DNA_Novosib 11619 11789 30 + . . scaffold366 GLEAN mRNA 509 12362 0.308663 - . ID=CGI_10007770; scaffold366 WUBlastX DNA_Novosib 11619 11789 30 + . . scaffold366 GLEAN mRNA 4558 26262 1 + . ID=CGI_10007771; scaffold723 WUBlastX LTR_Gypsy 220019 220234 42 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_Jockey 397037 397423 22 - . . . . . -1 -1 -1 . . . scaffold487 WUBlastX DNA_P 448651 448782 30 - . . . . . -1 -1 -1 . . . scaffold388 WUBlastX DNA_P 425484 425648 40 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_P 277413 277532 30 - . . scaffold1036 GLEAN mRNA 273314 285936 0.919073 + . ID=CGI_10019959; scaffold880 WUBlastX DNA_TcMar-Tc1 358213 358554 30 + . . . . . -1 -1 -1 . . . scaffold36768 WUBlastX LINE_Penelope 19200 19610 36 - . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Penelope 151372 151476 23 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_Penelope 279987 280124 71 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_Penelope 322269 322496 72 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_Penelope 540876 541001 73 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_Penelope 459648 459854 71 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_Penelope 599498 599611 81 + . . . . . -1 -1 -1 . . . scaffold1725 WUBlastX LINE_Penelope 60517 60909 36 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_Penelope 1603082 1603273 31 - . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX LINE_L1 1019 1294 20 - . . scaffold43798 GLEAN mRNA 709 50895 0.990383 - . ID=CGI_10012536; scaffold1772 WUBlastX LINE_L2 31546 31749 41 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L2 732140 732421 69 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L2 833580 833819 57 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_L2 17814 18065 47 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_L2 151278 151469 35 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L2 328785 328946 51 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_L2 178786 178887 27 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L2 177941 178078 22 + . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LINE_L2 41751 42008 35 + . . . . . -1 -1 -1 . . . scaffold382 WUBlastX LINE_L2 1504 1752 51 - . . . . . -1 -1 -1 . . . C22542 WUBlastX LINE_R2 95 169 45 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_R2 172718 172813 73 - . . . . . -1 -1 -1 . . . scaffold39986 WUBlastX LINE_CR1 67537 67659 22 - . . . . . -1 -1 -1 . . . scaffold31002 WUBlastX LTR_Ngaro 4298 4492 75 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Ngaro 788530 788778 29 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 1993 2274 47 + . . . . . -1 -1 -1 . . . scaffold1058 WUBlastX LTR_Gypsy 12363 12662 24 - . . scaffold1058 GLEAN mRNA 10764 12980 0.538394 - . ID=CGI_10004875; scaffold1703 WUBlastX DNA_TcMar-Marin 14558 14935 57 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_TcMar-Marin 679573 679662 35 + . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX DNA_TcMar-Marin 154490 154702 36 + . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX DNA_TcMar-Marin 189534 189737 55 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX DNA_TcMar-Marin 140420 140644 46 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX DNA_TcMar-Marin 269835 269894 25 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_TcMar-Marin 10866 11309 72 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Marin 624266 624442 56 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_TcMar-Tc1 470640 471035 36 + . . . . . -1 -1 -1 . . . scaffold32118 WUBlastX DNA_TcMar-Marin 8944 9030 42 - . . . . . -1 -1 -1 . . . C32918 WUBlastX DNA_TcMar-Fot1 7296 7499 58 + . . . . . -1 -1 -1 . . . C32918 WUBlastX DNA_TcMar-Fot1 9185 9361 33 + . . . . . -1 -1 -1 . . . C31062 WUBlastX DNA_TcMar-Tc2 4153 4365 43 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Fot1 1790519 1790914 46 + . . . . . -1 -1 -1 . . . scaffold260 WUBlastX DNA_TcMar-Tc1 5098 5307 43 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX DNA_TcMar-Tc1 213673 213777 68 - . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold204 WUBlastX DNA_TcMar-Tc1 267935 268195 40 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_TcMar-Pogo 182393 182512 60 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_TcMar-Tc1 1323012 1323191 50 + . . scaffold962 GLEAN mRNA 1315869 1333325 0.896664 + . ID=CGI_10027695; scaffold1815 WUBlastX DNA_Kolobok-Hyd 149396 149554 21 + . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX DNA_Kolobok-Hyd 149839 149904 26 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Kolobok-Hyd 7841 8005 20 + . . scaffold317 GLEAN mRNA 7090 24632 0.990181 + . ID=CGI_10019337; scaffold150 WUBlastX LINE_L1 578835 578960 52 + . . . . . -1 -1 -1 . . . scaffold340 WUBlastX LINE_L1 189589 189957 22 + . . scaffold340 GLEAN mRNA 188953 190893 0.999998 + . ID=CGI_10011103; scaffold39222 WUBlastX LINE_L1 1211 1978 20 - . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX LINE_L1 496 1113 21 - . . . . . -1 -1 -1 . . . scaffold42124 WUBlastX LINE_L1 3510 3716 35 - . . . . . -1 -1 -1 . . . scaffold775 WUBlastX LINE_L1-Tx1 131495 131854 56 + . . scaffold775 GLEAN mRNA 131840 132127 0.775544 + . ID=CGI_10006095; scaffold485 WUBlastX LINE_L1 878961 879035 21 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_L1 72451 72714 53 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1 42080 42127 23 + . . . . . -1 -1 -1 . . . C29670 WUBlastX LINE_L1-Tx1 1953 2207 20 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L1-Tx1 411583 411777 21 - . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L1-Tx1 148491 148643 49 - . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LINE_L1-Tx1 55703 55921 40 - . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_L1-Tx1 102454 102816 42 + . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold1041 WUBlastX LINE_L1 294654 294809 21 - . . scaffold1041 GLEAN mRNA 294420 297225 0.614409 - . ID=CGI_10014681; scaffold1650 WUBlastX LINE_L1 270781 271131 22 - . . scaffold1650 GLEAN mRNA 257574 281084 0.789325 - . ID=CGI_10017776; scaffold1106 WUBlastX LINE_L1 14129 14251 38 - . . scaffold1106 GLEAN mRNA 13450 22985 0.482682 + . ID=CGI_10002425; scaffold41982 WUBlastX LINE_L1 44212 44292 54 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L1 554899 555447 20 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_L1-Tx1 783528 783746 56 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 26034 26216 55 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold40822 WUBlastX LINE_L1 44239 44373 50 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1 852116 852520 30 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1 164321 164614 24 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1-Tx1 414001 414066 20 + . . scaffold433 GLEAN mRNA 407360 429733 0.877924 + . ID=CGI_10027068; scaffold286 WUBlastX LINE_L1 203936 204298 36 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 93286 93399 25 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1028 WUBlastX LINE_L1-Tx1 62536 62604 20 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold4 WUBlastX LINE_L1-Tx1 179455 179673 39 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_L1-Tx1 127539 127619 20 - . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LINE_L1-Tx1 172345 172506 52 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_L1 88283 88333 30 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold527 WUBlastX LINE_L1 309948 310046 57 - . . . . . -1 -1 -1 . . . scaffold1538 WUBlastX LINE_L1-Tx1 5337 5606 69 + . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_L1 3282 3506 22 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L1 538822 539352 24 - . . scaffold1897 GLEAN mRNA 538003 539610 0.528485 - . ID=CGI_10020937; scaffold422 WUBlastX LINE_L1 289960 290376 24 - . . scaffold422 GLEAN mRNA 289885 299319 1 - . ID=CGI_10018806; scaffold43692 WUBlastX LINE_L1 182054 182746 44 - . . scaffold43692 GLEAN mRNA 181430 182872 1 - . ID=CGI_10011817; scaffold34910 WUBlastX LINE_L1 10408 10620 39 - . . . . . -1 -1 -1 . . . C30072 WUBlastX LINE_L1 2287 2559 28 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_Penelope 91734 91937 46 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_Penelope 482857 483258 42 - . . scaffold626 GLEAN mRNA 474315 488242 0.98805 - . ID=CGI_10020000; scaffold86 WUBlastX LINE_Penelope 1482652 1482855 47 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LINE_Penelope 49940 50326 49 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX DNA_PiggyBac 669098 669238 61 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_RTE-BovB 267998 268144 54 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold625 WUBlastX LINE_RTE-BovB 496300 496509 37 + . . scaffold625 GLEAN mRNA 494757 502265 0.999676 - . ID=CGI_10023420; scaffold157 WUBlastX LINE_RTE-BovB 89540 89950 37 + . . . . . -1 -1 -1 . . . scaffold218 WUBlastX LINE_RTE-BovB 45022 45219 60 - . . . . . -1 -1 -1 . . . C14948 WUBlastX LINE_RTE-BovB 163 276 63 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-BovB 1569670 1569807 40 - . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_RTE-X 47342 47461 66 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 324423 324674 36 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 92746 93096 28 - . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_RTE-X 71231 71317 51 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LINE_RTE-BovB 218083 218331 42 + . . . . . -1 -1 -1 . . . C26016 WUBlastX LINE_RTE-BovB 707 910 37 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 205168 205353 70 + . . . . . -1 -1 -1 . . . scaffold724 WUBlastX LINE_RTE-BovB 58746 58934 50 - . . . . . -1 -1 -1 . . . scaffold724 WUBlastX LINE_RTE-BovB 59262 59363 34 - . . . . . -1 -1 -1 . . . scaffold34694 WUBlastX LINE_RTE-BovB 4913 5119 51 - . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LINE_RTE-BovB 37459 37695 37 + . . . . . -1 -1 -1 . . . C6573 WUBlastX LINE_RTE-X 2 127 67 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 449708 449926 24 + . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LINE_RTE-X 135 308 25 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 309152 309286 56 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 1101737 1101922 25 + . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LINE_RTE-X 84051 84173 26 + . . scaffold542 GLEAN mRNA 79940 96731 0.999415 - . ID=CGI_10014759; scaffold324 WUBlastX DNA_TcMar-Tc1 254712 254990 25 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 847281 847625 27 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 33406 33456 33 - . . . . . -1 -1 -1 . . . scaffold35194 WUBlastX DNA_Maverick 6804 7274 25 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_Proto2 760736 760945 22 - . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LINE_R2 11115 11177 20 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX DNA_NOF 118340 118651 33 - . . . . . -1 -1 -1 . . . C34458 WUBlastX LTR_Gypsy 12860 13672 33 - . . . . . -1 -1 -1 . . . C30550 WUBlastX LINE_Rex-Babar 5390 5611 47 - . . . . . -1 -1 -1 . . . scaffold31956 WUBlastX LINE_L1 8298 9140 27 + . . scaffold31956 GLEAN mRNA 3660 8304 0.998023 + . ID=CGI_10000816; scaffold31956 WUBlastX LINE_L1 8298 9140 27 + . . scaffold31956 GLEAN mRNA 8433 9686 1 + . ID=CGI_10000817; scaffold789 WUBlastX LTR_Gypsy 319070 319291 60 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 624773 624850 29 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-BovB 654448 654537 36 + . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_RTE-BovB 220069 220593 31 - . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LINE_RTE-BovB 32547 32792 72 + . . . . . -1 -1 -1 . . . scaffold1764 WUBlastX DNA_PiggyBac 4192 4332 51 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_PiggyBac 285389 285679 30 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold41598 WUBlastX DNA_PiggyBac 65707 65775 31 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold43798 WUBlastX LINE_CR1 158789 159040 33 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_TcMar-Pogo 85970 86059 30 - . . scaffold20 GLEAN mRNA 85901 95584 0.999992 + . ID=CGI_10023562; scaffold204 WUBlastX DNA_PiggyBac 609341 609628 23 + . . scaffold204 GLEAN mRNA 602391 618786 0.480742 + . ID=CGI_10026119; scaffold37876 WUBlastX DNA_PiggyBac 7 390 31 - . . . . . -1 -1 -1 . . . scaffold33046 WUBlastX DNA_Maverick 11188 11712 34 + . . . . . -1 -1 -1 . . . scaffold866 WUBlastX LINE_RTE-BovB 52412 52564 29 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_RTE-X 155639 156019 66 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 795332 795673 40 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_RTE-X 578596 578982 23 - . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold1751 WUBlastX LINE_RTE-X 15727 15996 40 + . . scaffold1751 GLEAN mRNA 1921 19795 0.705782 - . ID=CGI_10010082; scaffold733 WUBlastX LINE_RTE-X 724147 724338 42 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 546167 546448 32 + . . . . . -1 -1 -1 . . . scaffold81 WUBlastX LINE_RTE-X 3683 3907 48 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LINE_RTE-X 90658 90849 42 - . . . . . -1 -1 -1 . . . scaffold1901 WUBlastX LINE_RTE-X 222073 222333 59 - . . . . . -1 -1 -1 . . . C29388 WUBlastX LINE_RTE-X 5096 5611 41 + . . C29388 GLEAN mRNA 1255 5572 0.998536 + . ID=CGI_10000526; scaffold36638 WUBlastX LINE_RTE-X 13742 13972 49 + . . scaffold36638 GLEAN mRNA 3118 17920 0.499919 + . ID=CGI_10002047; scaffold70 WUBlastX LINE_RTE-X 627588 627740 42 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LINE_RTE-X 87420 87551 44 - . . . . . -1 -1 -1 . . . C33654 WUBlastX LINE_RTE-X 1895 2107 37 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LINE_RTE-X 64093 64341 24 + . . scaffold1850 GLEAN mRNA 52225 78239 0.896648 + . ID=CGI_10009881; scaffold1850 WUBlastX LINE_RTE-X 64093 64341 24 + . . scaffold1850 GLEAN mRNA 55417 67382 0.791674 - . ID=CGI_10009882; scaffold4 WUBlastX LINE_RTE-X 359973 360200 32 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 258924 259031 48 - . . . . . -1 -1 -1 . . . scaffold42252 WUBlastX LINE_RTE-X 93450 93584 48 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_RTE-X 503216 503500 76 - . . scaffold664 GLEAN mRNA 503105 503419 0.999344 - . ID=CGI_10021453; C34208 WUBlastX LINE_RTE-X 15527 15679 51 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_RTE-X 303843 304175 29 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_RTE-X 2632 2811 63 - . . . . . -1 -1 -1 . . . scaffold37554 WUBlastX LINE_RTE-X 3505 3714 49 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LINE_RTE-X 70203 70538 46 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_RTE-X 437148 437393 27 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_RTE-X 434757 434933 47 - . . . . . -1 -1 -1 . . . scaffold40380 WUBlastX LINE_RTE-X 74928 75008 24 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LINE_RTE-X 70670 70762 51 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_RTE-X 115214 115672 66 + . . scaffold113 GLEAN mRNA 112752 117970 0.458528 + . ID=CGI_10021286; C27882 WUBlastX LINE_RTE-X 4904 5041 50 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_RTE-X 467240 467347 27 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LINE_RTE-X 278672 278968 31 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold1061 WUBlastX LINE_RTE-X 206842 207057 37 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 261699 262157 36 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 627555 627701 52 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_RTE-X 104801 104872 27 - . . . . . -1 -1 -1 . . . scaffold1901 WUBlastX LINE_RTE-X 45481 45708 36 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-X 722637 722867 33 - . . scaffold1188 GLEAN mRNA 712018 725901 0.544624 + . ID=CGI_10025499; scaffold1188 WUBlastX LINE_RTE-X 868400 868651 39 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_RTE-X 58947 59252 42 + . . . . . -1 -1 -1 . . . C29974 WUBlastX LINE_RTE-X 6178 6432 55 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 264339 264581 40 + . . scaffold226 GLEAN mRNA 263267 278066 0.893615 + . ID=CGI_10025348; scaffold48 WUBlastX LINE_RTE-X 259683 259808 46 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_RTE-X 143727 143897 30 + . . scaffold377 GLEAN mRNA 140445 144953 0.80154 - . ID=CGI_10019404; scaffold168 WUBlastX LINE_RTE-X 423490 423612 34 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 391333 391515 25 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_RTE-X 747126 747302 31 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_RTE-X 1065979 1066125 37 - . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_RTE-X 532038 532247 63 + . . . . . -1 -1 -1 . . . scaffold39572 WUBlastX LINE_RTE-X 63095 63211 32 + . . scaffold39572 GLEAN mRNA 44325 68809 0.785898 - . ID=CGI_10003446; scaffold41022 WUBlastX LINE_RTE-X 98025 98156 46 - . . scaffold41022 GLEAN mRNA 87016 104666 0.650358 + . ID=CGI_10004637; scaffold714 WUBlastX LINE_RTE-X 471799 471900 42 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-X 471954 472259 23 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-X 212710 212859 26 - . . scaffold79 GLEAN mRNA 205076 218943 0.544852 + . ID=CGI_10024618; scaffold128 WUBlastX LINE_RTE-X 444323 444685 26 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 619488 619685 28 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_RTE-X 308598 308720 49 + . . scaffold479 GLEAN mRNA 298196 323122 0.478892 - . ID=CGI_10015700; scaffold709 WUBlastX LTR_Gypsy 72735 72941 48 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy 266364 266852 42 - . . scaffold583 GLEAN mRNA 266361 266834 0.53608 - . ID=CGI_10023615; scaffold1362 WUBlastX LINE_L1 582108 582215 59 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_L1 582688 582780 26 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_MuDR 939939 940109 46 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX DNA_TcMar-Marin 11680 11961 30 - . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX DNA_TcMar-Marin 53711 53839 46 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Marin 624209 624436 50 - . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX DNA_TcMar-Marin 53005 53199 55 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX DNA_TcMar-Marin 449114 449317 49 + . . scaffold1682 GLEAN mRNA 447464 452325 1 - . ID=CGI_10016060; scaffold39126 WUBlastX DNA_TcMar-Marin 3536 3694 40 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc1 1472872 1473048 38 + . . . . . -1 -1 -1 . . . scaffold37062 WUBlastX DNA_TcMar-Marin 24629 24844 65 + . . . . . -1 -1 -1 . . . scaffold1080 WUBlastX DNA_TcMar-Tc2 148436 148651 40 + . . scaffold1080 GLEAN mRNA 148571 152000 0.995421 + . ID=CGI_10012673; scaffold1080 WUBlastX DNA_TcMar-Tc2 149001 149237 31 + . . scaffold1080 GLEAN mRNA 148571 152000 0.995421 + . ID=CGI_10012673; scaffold43136 WUBlastX LTR_ERV1 133326 133511 22 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Sola 636951 637121 35 + . . scaffold1532 GLEAN mRNA 635106 637133 0.477064 + . ID=CGI_10028263; scaffold194 WUBlastX DNA_Sola 205153 205533 35 - . . scaffold194 GLEAN mRNA 205150 207069 0.728723 - . ID=CGI_10011067; scaffold402 WUBlastX DNA_Sola 105404 105442 25 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX DNA_Sola 105570 105839 46 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_Sola 772693 772881 43 - . . . . . -1 -1 -1 . . . C35952 WUBlastX DNA_Sola 436 714 47 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; C28316 WUBlastX DNA_Sola 10 240 73 + . . . . . -1 -1 -1 . . . C33408 WUBlastX DNA_Sola 4307 4474 54 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX DNA_Sola 10955 11125 42 - . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX DNA_Sola 18087 18245 52 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Sola 315198 315284 22 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_DIRS 1017665 1018054 44 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold41594 WUBlastX LTR_Ngaro 77002 77307 40 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LTR_Ngaro 37439 37531 61 - . . scaffold189 GLEAN mRNA 16396 38520 0.48054 + . ID=CGI_10018663; scaffold31 WUBlastX LTR_Ngaro 166937 167053 65 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LTR_DIRS 27400 27639 20 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_DIRS 301086 301175 79 + . . . . . -1 -1 -1 . . . scaffold36904 WUBlastX LTR_Gypsy 23268 23330 22 + . . scaffold36904 GLEAN mRNA 10005 31731 0.991888 - . ID=CGI_10002168; scaffold1771 WUBlastX LTR_Gypsy 21874 22023 23 + . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX DNA_hAT-Tag1 146407 146913 23 + . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX DNA_TcMar-Marin 29686 29742 21 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy 205314 205424 23 - . . . . . -1 -1 -1 . . . scaffold35568 WUBlastX DNA_PiggyBac 15420 15803 31 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Gypsy 154802 155107 35 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc1 247366 247638 32 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1-Tx1 322609 322722 65 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_L1-Tx1 334024 334230 22 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1737 WUBlastX LINE_L1-Tx1 22447 22653 22 - . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_L1-Tx1 98043 98252 55 - . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold581 WUBlastX LINE_L1-Tx1 211952 212278 39 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1-Tx1 388452 388508 20 - . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX LINE_L1-Tx1 49285 49470 32 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 435618 435818 52 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold43794 WUBlastX LINE_L1-Tx1 155778 156029 33 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_L1-Tx1 259146 259355 44 + . . . . . -1 -1 -1 . . . C33024 WUBlastX LINE_L1-Tx1 3931 4311 58 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 543443 543556 30 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_L1-Tx1 663047 663328 42 + . . . . . -1 -1 -1 . . . scaffold1481 WUBlastX LINE_L1-Tx1 28368 28616 27 + . . scaffold1481 GLEAN mRNA 18084 39742 0.999949 - . ID=CGI_10003892; scaffold43024 WUBlastX LINE_L1-Tx1 26067 26243 25 - . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LINE_L1-Tx1 162212 162403 45 + . . scaffold361 GLEAN mRNA 159523 162878 0.998439 - . ID=CGI_10020846; scaffold38674 WUBlastX LINE_L1-Tx1 4222 4386 34 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_L1-Tx1 59524 59736 47 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LTR_Copia 257529 257762 21 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_ERVK 226478 226711 28 + . . scaffold106 GLEAN mRNA 225926 241721 0.999167 + . ID=CGI_10022031; scaffold1845 WUBlastX DNA_TcMar-Tigge 138929 139186 24 - . . scaffold1845 GLEAN mRNA 137873 139480 1 - . ID=CGI_10011994; scaffold43630 WUBlastX LINE_L1-Tx1 131512 131691 20 + . . scaffold43630 GLEAN mRNA 124084 143725 0.996937 + . ID=CGI_10011525; scaffold1187 WUBlastX LINE_L1-Tx1 72029 72106 30 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_L1-Tx1 366907 367014 46 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_L1-Tx1 367034 367165 28 - . . . . . -1 -1 -1 . . . scaffold1690 WUBlastX LINE_L1-Tx1 47721 48044 44 + . . scaffold1690 GLEAN mRNA 9012 64265 0.995929 - . ID=CGI_10003316; scaffold550 WUBlastX LINE_L1-Tx1 282776 282955 29 - . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_L1-Tx1 88303 88593 41 + . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_Telomeric 97058 97381 35 + . . scaffold1605 GLEAN mRNA 85574 101575 0.910604 + . ID=CGI_10023348; scaffold368 WUBlastX DNA_TcMar-Tc1 411856 412383 20 + . . . . . -1 -1 -1 . . . C33126 WUBlastX DNA_TcMar-Tc1 5679 6266 31 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_TcMar-Tc1 605542 605766 34 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_TcMar-Tc1 672243 672536 51 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_TcMar-Tc1 440679 441005 38 - . . scaffold100 GLEAN mRNA 434385 451106 0.72825 - . ID=CGI_10026438; scaffold1825 WUBlastX DNA_TcMar-Tc1 254213 254635 54 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX DNA_TcMar-Tc1 1288432 1288770 60 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX DNA_TcMar-Tc1 59588 59899 59 - . . scaffold57 GLEAN mRNA 58352 60491 0.999999 - . ID=CGI_10020536; scaffold35336 WUBlastX DNA_TcMar-Tc1 10790 11020 51 - . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX DNA_hAT-Tip100 120341 120544 58 - . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_L2 292078 292452 44 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_CR1 705357 705452 22 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_CR1-L2 566642 566728 30 + . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_CR1-L2 9995 10348 72 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_CR1 20985 21176 96 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold41452 WUBlastX LINE_L2 54398 54523 39 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_Jockey 150238 150498 22 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX DNA_Academ 2926 3312 72 - . . . . . -1 -1 -1 . . . scaffold660 WUBlastX DNA_hAT-Tip100 200653 200952 28 + . . . . . -1 -1 -1 . . . scaffold635 WUBlastX LTR_Gypsy-Cigr 117786 117965 70 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold90 WUBlastX DNA_hAT-Charlie 400221 400283 31 - . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX DNA_Chapaev 20302 21039 25 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_DIRS 52904 53023 32 - . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LTR_DIRS 43068 43364 49 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; C35952 WUBlastX LINE_L2 2451 2720 56 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold145 WUBlastX DNA_Crypton 573399 573593 38 - . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_L2 100564 100887 48 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; C28620 WUBlastX LTR_Gypsy 5247 5495 89 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 318721 318822 22 - . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LTR_Gypsy 23769 24359 33 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold1698 WUBlastX LTR_Gypsy 50102 50422 68 - . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Gypsy 13631 14320 49 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_Jockey 398651 399004 69 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold267 WUBlastX LTR_Gypsy 150923 150985 24 + . . scaffold267 GLEAN mRNA 150724 150975 0.588634 + . ID=CGI_10018296; scaffold267 WUBlastX LTR_Gypsy 150923 150985 24 + . . scaffold267 GLEAN mRNA 150838 169540 0.999588 - . ID=CGI_10018297; scaffold35994 WUBlastX LTR_Gypsy 26541 26885 52 + . . . . . -1 -1 -1 . . . C33308 WUBlastX DNA_Harbinger 12231 12680 68 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Harbinger 305010 305234 41 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy 389841 389975 76 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_Kolobok-IS4 72078 72641 43 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_IS4EU 264985 265146 39 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LINE_Jockey 137321 137524 35 + . . scaffold1445 GLEAN mRNA 135829 138603 0.904297 + . ID=CGI_10010370; scaffold421 WUBlastX DNA_TcMar-Marin 151508 151627 25 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_hAT-hATw 10707 10928 66 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_hAT-hATw 374391 374570 42 - . . . . . -1 -1 -1 . . . scaffold41346 WUBlastX RC_Helitron 33674 33805 51 - . . scaffold41346 GLEAN mRNA 32052 37243 0.990251 - . ID=CGI_10004999; scaffold619 WUBlastX DNA_hAT-Hobo 486234 486398 68 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold914 WUBlastX LINE_L1 492976 493296 41 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 390964 391500 27 - . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1 139708 140094 49 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 532134 532664 68 + . . scaffold150 GLEAN mRNA 532020 532706 0.618008 + . ID=CGI_10028613; scaffold1391 WUBlastX LINE_L1 480760 480903 25 + . . . . . -1 -1 -1 . . . scaffold675 WUBlastX DNA_TcMar-Marin 115809 115958 42 - . . scaffold675 GLEAN mRNA 109657 116904 0.999611 - . ID=CGI_10017856; scaffold36698 WUBlastX DNA_TcMar-Marin 2444 2623 39 - . . scaffold36698 GLEAN mRNA 1616 6984 0.999949 - . ID=CGI_10002014; scaffold588 WUBlastX LINE_Penelope 145921 146382 45 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold868 WUBlastX LINE_Penelope 114644 114871 33 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_Penelope 103956 104168 51 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 721711 721944 50 - . . scaffold393 GLEAN mRNA 700989 727086 0.68143 + . ID=CGI_10026911; scaffold1743 WUBlastX LINE_RTE-X 233965 234378 49 - . . scaffold1743 GLEAN mRNA 225368 248286 0.742801 - . ID=CGI_10011658; scaffold388 WUBlastX LINE_RTE-X 531963 532253 60 + . . . . . -1 -1 -1 . . . scaffold604 WUBlastX LINE_RTE-X 45150 45341 50 - . . scaffold604 GLEAN mRNA 42759 53290 0.454666 + . ID=CGI_10005591; scaffold1014 WUBlastX LINE_RTE-X 292212 292463 69 - . . . . . -1 -1 -1 . . . scaffold1515 WUBlastX LINE_RTE-X 5987 6202 66 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 367476 367622 21 + . . . . . -1 -1 -1 . . . scaffold41358 WUBlastX LINE_RTE-X 23113 23463 22 + . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LINE_RTE-BovB 21518 21709 69 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX DNA_PiggyBac 97079 97225 65 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_PiggyBac 125470 125661 40 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX LINE_RTE-BovB 58544 58759 65 - . . . . . -1 -1 -1 . . . scaffold1675 WUBlastX LTR_Gypsy 11081 11191 26 - . . scaffold1675 GLEAN mRNA 745 11817 0.679204 - . ID=CGI_10001288; scaffold32550 WUBlastX LINE_RTE-BovB 7247 7372 42 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 946779 947378 69 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold94 WUBlastX DNA_Sola 50180 50302 96 + . . scaffold94 GLEAN mRNA 43492 50308 0.779981 + . ID=CGI_10013908; scaffold664 WUBlastX DNA_TcMar-Marin 656777 656941 22 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold40606 WUBlastX DNA_TcMar-Marin 43565 43903 72 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_TcMar-Marin 33599 33811 74 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX DNA_Zator 993609 993755 69 - . . scaffold885 GLEAN mRNA 985596 995440 0.998419 + . ID=CGI_10025233; scaffold533 WUBlastX DNA_TcMar-Tc1 25413 25655 67 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_TcMar-Tc1 674173 674529 60 + . . . . . -1 -1 -1 . . . scaffold40808 WUBlastX DNA_TcMar-Tc1 55001 55186 59 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_TcMar-Tc1 320441 320647 79 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LINE_L1-Tx1 211845 212162 37 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_L1-Tx1 72092 72337 44 - . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX LINE_L1-Tx1 122590 122835 54 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1111738 1111911 22 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_L1-Tx1 427454 427531 20 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_hAT-Tip100 17356 17685 51 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_Merlin 101274 101474 77 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_CR1-L2 483598 483918 48 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_CR1 212505 213083 51 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold146 WUBlastX LINE_CR1-L2 343385 343582 45 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_CR1-L2 847842 848069 93 - . . scaffold1189 GLEAN mRNA 845721 854724 0.805708 + . ID=CGI_10023837; scaffold1869 WUBlastX LINE_CR1-L2 52636 52683 29 + . . . . . -1 -1 -1 . . . scaffold39594 WUBlastX LINE_CR1-L2 54351 54677 26 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LTR_Gypsy 69227 69622 77 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 16636 16761 47 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 17191 17244 35 + . . . . . -1 -1 -1 . . . C28654 WUBlastX LTR_Gypsy-Cigr 446 850 81 - . . . . . -1 -1 -1 . . . scaffold635 WUBlastX LTR_Gypsy-Cigr 117822 117965 85 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold1583 WUBlastX LTR_Gypsy 821745 822347 64 - . . scaffold1583 GLEAN mRNA 822207 822614 0.999365 - . ID=CGI_10025843; scaffold43842 WUBlastX DNA_Crypton 314793 314960 37 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LTR_DIRS 170894 171280 64 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LTR_DIRS 171442 171570 40 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX RC_Helitron 50407 50739 106 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LINE_I 18910 19005 41 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold42268 WUBlastX DNA_IS4EU 88880 89707 43 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_I 843551 843592 20 - . . . . . -1 -1 -1 . . . scaffold441 WUBlastX DNA_IS4EU 48481 48651 100 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_IS4EU 503394 503672 28 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX DNA_IS4EU 503741 503860 44 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; C25346 WUBlastX DNA_Harbinger 2741 2914 73 + . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LTR_Gypsy 81015 81923 77 + . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LTR_Gypsy 14632 14811 77 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LINE_Penelope 203141 203458 81 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_Penelope 536556 537044 65 - . . . . . -1 -1 -1 . . . scaffold1881 WUBlastX DNA_TcMar-Marin 54389 54529 58 + . . . . . -1 -1 -1 . . . scaffold178 WUBlastX DNA_TcMar-m44 26785 27030 80 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_L2 416777 417109 79 + . . . . . -1 -1 -1 . . . C26584 WUBlastX LINE_L1-Tx1 3712 3993 28 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_L1 239169 239321 37 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_L1 51995 52219 94 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold1488 WUBlastX LINE_RTE-X 99748 100038 27 + . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold1301 WUBlastX LINE_RTE-X 1244540 1244743 22 + . . scaffold1301 GLEAN mRNA 1240763 1263950 0.99974 - . ID=CGI_10027768; C32276 WUBlastX LTR_ERV1 9395 9616 24 - . . C32276 GLEAN mRNA 2612 10129 0.932261 - . ID=CGI_10000874; scaffold37092 WUBlastX DNA_Maverick 7824 7976 65 + . . . . . -1 -1 -1 . . . C29554 WUBlastX DNA_Maverick 1760 2086 66 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX DNA_PiggyBac 472943 473209 82 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_RTE-X 425484 425675 25 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 398820 399095 79 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LINE_RTE-X 50057 50242 66 + . . scaffold1743 GLEAN mRNA 46556 59343 0.501263 + . ID=CGI_10011653; scaffold1488 WUBlastX LINE_RTE-X 96216 96554 32 + . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold1817 WUBlastX DNA_TcMar-Pogo 86644 87369 21 + . . . . . -1 -1 -1 . . . scaffold37680 WUBlastX DNA_TcMar-Marin 18924 19028 35 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX LINE_CR1 113782 113856 25 + . . . . . -1 -1 -1 . . . scaffold42788 WUBlastX LINE_L2 180983 181234 41 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_CR1 78153 78569 79 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LINE_CR1 352279 352416 58 - . . . . . -1 -1 -1 . . . scaffold31684 WUBlastX LINE_L2 1767 2024 51 - . . . . . -1 -1 -1 . . . scaffold31684 WUBlastX LINE_L2 2138 2242 38 - . . . . . -1 -1 -1 . . . scaffold907 WUBlastX LINE_CR1 5729 6472 39 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX LINE_CR1 149629 150000 89 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L2 742365 742838 25 + . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_L2 111528 111632 25 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_PiggyBac 113199 113330 67 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_I 296118 296441 46 + . . . . . -1 -1 -1 . . . scaffold35286 WUBlastX LINE_L2 7502 7795 96 + . . scaffold35286 GLEAN mRNA 5633 23296 1 + . ID=CGI_10001451; scaffold34580 WUBlastX LTR_DIRS 14661 14873 103 - . . . . . -1 -1 -1 . . . C30862 WUBlastX LTR_Ngaro 3980 4216 84 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LTR_Ngaro 313012 313179 58 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_Gypsy 10139 10654 36 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Gypsy 198512 199522 68 + . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LTR_Gypsy 134133 134342 42 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold35640 WUBlastX LTR_Gypsy-Gmr1 14970 15212 32 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 754967 755230 68 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LTR_Gypsy 138669 138731 41 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LTR_Gypsy 138848 139075 29 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Gypsy 516984 517166 36 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy-Cigr 101792 102343 22 - . . . . . -1 -1 -1 . . . scaffold207 WUBlastX LTR_Gypsy 25351 25677 74 + . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LTR_Gypsy 13756 14052 41 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LTR_Gypsy 88195 88248 27 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold733 WUBlastX LTR_Gypsy 1018219 1018812 41 + . . scaffold733 GLEAN mRNA 1017652 1019905 0.995936 + . ID=CGI_10025901; scaffold266 WUBlastX DNA_Harbinger 264436 264678 70 + . . . . . -1 -1 -1 . . . scaffold39144 WUBlastX DNA_Harbinger 52569 53261 88 + . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX DNA_hAT-Tip100 850 1173 70 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_ERV1 706932 707561 83 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 32976 33368 100 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold664 WUBlastX DNA_TcMar-Marin 655927 656016 45 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold203 WUBlastX DNA_TcMar-Marin 111559 111600 25 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold619 WUBlastX DNA_TcMar-Marin 696603 696704 34 - . . . . . -1 -1 -1 . . . C28554 WUBlastX LINE_Penelope 4599 5009 63 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_Penelope 114226 114624 25 + . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_Penelope 131984 132466 82 + . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 216114 216233 50 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold710 WUBlastX LINE_RTE-X 6230 6505 45 + . . . . . -1 -1 -1 . . . C33560 WUBlastX LINE_RTE-X 703 927 36 - . . . . . -1 -1 -1 . . . scaffold36278 WUBlastX DNA_PiggyBac 28794 29246 94 - . . scaffold36278 GLEAN mRNA 22300 32002 0.651135 - . ID=CGI_10001848; scaffold35070 WUBlastX DNA_PiggyBac 11707 11946 21 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_R2 590432 590509 25 + . . scaffold237 GLEAN mRNA 590107 590598 0.776648 + . ID=CGI_10021587; scaffold693 WUBlastX LINE_RTE-BovB 9933 9971 25 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold693 WUBlastX LINE_RTE-BovB 10157 10423 29 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold1253 WUBlastX LINE_RTE-BovB 109349 109537 51 + . . scaffold1253 GLEAN mRNA 102918 110431 0.634382 - . ID=CGI_10004823; scaffold1583 WUBlastX LINE_RTE-X 282821 283300 38 - . . . . . -1 -1 -1 . . . C21560 WUBlastX LINE_RTE-X 3 206 78 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 463905 464192 46 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_TcMar-Pogo 283119 283286 75 - . . . . . -1 -1 -1 . . . scaffold36398 WUBlastX LTR_Gypsy 29085 29636 59 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 132105 132152 20 + . . . . . -1 -1 -1 . . . C9323 WUBlastX LTR_Copia 11 142 96 + . . . . . -1 -1 -1 . . . scaffold1281 WUBlastX LTR_Gypsy 7381 7566 34 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold756 WUBlastX LTR_ERV1 245201 245683 38 - . . . . . -1 -1 -1 . . . C26726 WUBlastX LTR_Pao 2325 2468 88 - . . . . . -1 -1 -1 . . . C26726 WUBlastX LTR_Pao 2462 2512 35 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LINE_L2 34896 35135 61 + . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_L2 31238 31417 60 - . . scaffold922 GLEAN mRNA 26443 42770 0.364166 - . ID=CGI_10005661; scaffold305 WUBlastX LINE_L2 194124 194549 65 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 76778 77191 69 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LTR_Gypsy 49817 49864 33 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 107988 108527 28 - . . . . . -1 -1 -1 . . . scaffold707 WUBlastX LTR_Gypsy 40871 41041 125 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold975 WUBlastX LINE_RTE-BovB 129941 130039 37 + . . scaffold975 GLEAN mRNA 123992 132770 1 - . ID=CGI_10013325; scaffold759 WUBlastX LTR_Ngaro 12920 13330 45 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX LTR_Ngaro 21525 21770 86 + . . . . . -1 -1 -1 . . . scaffold296 WUBlastX LTR_Ngaro 116076 116285 23 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L2 1229223 1229483 37 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1101 WUBlastX DNA_IS4EU 539358 540164 57 + . . scaffold1101 GLEAN mRNA 537182 541543 0.997138 + . ID=CGI_10023032; scaffold1036 WUBlastX LTR_ERV1 219592 219687 30 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 474796 475605 40 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Gypsy 178378 178728 79 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LTR_Pao 273337 273507 58 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX DNA_Kolobok 293295 293537 101 - . . scaffold394 GLEAN mRNA 286632 296945 0.296609 + . ID=CGI_10022077; scaffold142 WUBlastX LINE_Penelope 117001 117384 77 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_Penelope 190804 191028 70 - . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-BovB 13532 13855 99 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc1 709405 709629 30 + . . . . . -1 -1 -1 . . . scaffold787 WUBlastX DNA_TcMar-Marin 274044 274316 111 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Ngaro 102025 102357 73 + . . . . . -1 -1 -1 . . . scaffold644 WUBlastX LINE_L1-Tx1 84904 85200 38 - . . . . . -1 -1 -1 . . . scaffold40106 WUBlastX LINE_RTE-X 50855 51097 54 - . . scaffold40106 GLEAN mRNA 43451 51495 0.999465 - . ID=CGI_10003856; scaffold1767 WUBlastX LINE_RTE-BovB 220969 221055 29 + . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX LINE_RTE-BovB 245352 245537 24 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_RTE-X 131075 131311 20 + . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_R2 138269 138991 33 + . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LINE_RTE-X 41899 42348 57 - . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold916 WUBlastX LINE_RTE-X 73905 74069 21 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_RTE-X 432655 432942 68 + . . scaffold492 GLEAN mRNA 430618 435399 1 - . ID=CGI_10024835; scaffold371 WUBlastX DNA_TcMar-Tc1 10949 11146 69 + . . . . . -1 -1 -1 . . . scaffold35466 WUBlastX DNA_TcMar-Tc1 18327 18683 20 - . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LINE_L1-Tx1 62587 62712 58 - . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LINE_L1-Tx1 62780 63010 46 - . . . . . -1 -1 -1 . . . scaffold1247 WUBlastX LINE_L1-Tx1 112215 112400 30 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold43764 WUBlastX DNA_TcMar-Tc1 111467 111595 22 + . . . . . -1 -1 -1 . . . C34174 WUBlastX LINE_CR1 14749 14907 98 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 459030 459218 101 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_L2 146480 146749 86 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_PiggyBac 126245 126367 57 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Ac 161865 162062 75 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 80212 80337 26 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LINE_L1 51906 51959 45 - . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Pao 50032 50172 20 - . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX DNA_Crypton 133095 133709 117 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold377 WUBlastX DNA_Crypton 308176 308652 90 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LTR_DIRS 369556 369714 23 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 570806 571636 58 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 570806 571636 58 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold1670 WUBlastX LTR_Gypsy 505351 506181 51 - . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LTR_Gypsy 277910 278506 76 - . . . . . -1 -1 -1 . . . scaffold33848 WUBlastX DNA_Kolobok 13840 13935 78 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 487930 488523 111 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_IS4EU 198835 199236 46 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_Helitron 272848 273207 43 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_L1-Tx1 3987 4514 55 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_L1-Tx1 113835 114272 71 + . . . . . -1 -1 -1 . . . scaffold1163 WUBlastX LINE_L1 17272 17661 52 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Kolobok 339362 339490 35 - . . . . . -1 -1 -1 . . . scaffold42306 WUBlastX LINE_R2 40975 41034 24 - . . . . . -1 -1 -1 . . . scaffold930 WUBlastX DNA_TcMar-Fot1 244170 244598 101 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_Penelope 178533 178715 56 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX DNA_MuDR 92735 92965 33 - . . scaffold252 GLEAN mRNA 92702 92941 0.866433 - . ID=CGI_10010763; scaffold252 WUBlastX DNA_MuDR 92735 92965 33 - . . scaffold252 GLEAN mRNA 89598 102247 0.999676 + . ID=CGI_10010762; scaffold1016 WUBlastX LINE_Penelope 153516 153779 46 + . . scaffold1016 GLEAN mRNA 151877 155965 1 - . ID=CGI_10016887; scaffold138 WUBlastX LINE_RTE-X 86697 86882 70 - . . scaffold138 GLEAN mRNA 84559 99053 1 + . ID=CGI_10008428; scaffold510 WUBlastX LINE_RTE-X 290447 290638 98 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LINE_RTE-X 19679 19768 40 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_RTE-X 763873 764349 75 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_MuDR 179314 179562 101 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold308 WUBlastX LINE_RTE-BovB 69493 69615 95 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_RTE-BovB 150169 150666 54 - . . . . . -1 -1 -1 . . . scaffold200 WUBlastX LINE_RTE-BovB 14970 15257 45 + . . scaffold200 GLEAN mRNA 11471 15537 0.697892 - . ID=CGI_10006218; scaffold4 WUBlastX LINE_RTE-X 459300 459590 41 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold1322 WUBlastX LINE_RTE-X 358710 358958 95 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_RTE-X 5783 6127 52 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_RTE-X 328321 328560 94 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_RTE-X 1041675 1041860 73 + . . . . . -1 -1 -1 . . . scaffold914 WUBlastX LINE_RTE-X 233081 233296 97 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1-Tx1 686969 687169 107 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_L1-Tx1 446031 446237 77 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX LINE_L1-Tx1 141234 141470 116 + . . scaffold802 GLEAN mRNA 137512 196873 0.499283 - . ID=CGI_10015727; scaffold400 WUBlastX LINE_L1-Tx1 197113 197310 100 - . . scaffold400 GLEAN mRNA 195909 223191 0.813725 - . ID=CGI_10011437; scaffold107 WUBlastX LTR_Pao 5760 5813 21 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_L2 1627 2226 80 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_CR1-L2 503939 504544 87 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 336845 337438 108 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 537352 537552 114 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 509420 509596 97 - . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LTR_DIRS 40824 41111 107 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold376 WUBlastX LTR_DIRS 420531 420908 67 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 166486 166776 111 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold36398 WUBlastX LTR_Gypsy 28275 28901 49 - . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_Gypsy 141504 141767 105 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold358 WUBlastX LTR_Gypsy 43115 43405 132 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_Penelope 39706 39978 73 + . . scaffold1149 GLEAN mRNA 36464 66919 0.42199 + . ID=CGI_10023447; C35760 WUBlastX DNA_MuDR 10685 10930 100 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX DNA_Merlin 329407 329592 25 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX DNA_Merlin 330110 330415 51 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 555085 555171 36 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX DNA_Kolobok 753815 753946 58 + . . scaffold82 GLEAN mRNA 743361 754636 0.569957 - . ID=CGI_10025268; scaffold1889 WUBlastX LINE_L1-Tx1 100750 101154 30 - . . . . . -1 -1 -1 . . . scaffold327 WUBlastX LINE_RTE-X 37108 37251 43 + . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LINE_RTE-X 442102 442641 49 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 56176 56715 77 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LINE_RTE-X 541513 541680 63 - . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX LINE_RTE-X 268826 269263 49 - . . scaffold1385 GLEAN mRNA 265685 273877 0.994335 - . ID=CGI_10013848; scaffold43130 WUBlastX LINE_RTE-X 122084 122569 52 + . . scaffold43130 GLEAN mRNA 99127 140133 0.992485 - . ID=CGI_10008963; scaffold547 WUBlastX DNA_TcMar-Pogo 206823 207068 136 - . . scaffold547 GLEAN mRNA 206215 217037 0.996504 + . ID=CGI_10018847; scaffold601 WUBlastX LINE_L1-Tx1 779071 779613 28 - . . . . . -1 -1 -1 . . . scaffold40948 WUBlastX LINE_L2 98630 99130 81 + . . scaffold40948 GLEAN mRNA 83628 99922 0.536967 + . ID=CGI_10004613; scaffold1849 WUBlastX LINE_CR1 84183 84596 89 - . . scaffold1849 GLEAN mRNA 72001 111634 0.818968 - . ID=CGI_10015914; C29970 WUBlastX LINE_CR1-L2 5705 5884 87 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LTR_Gypsy-Cigr 306286 306960 112 - . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 22040 22513 114 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold1473 WUBlastX LINE_L2 18659 19012 61 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L2 18973 19476 26 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; C11147 WUBlastX LTR_Gypsy 2 172 162 - . . . . . -1 -1 -1 . . . scaffold1116 WUBlastX RC_Helitron 28923 29327 107 - . . . . . -1 -1 -1 . . . scaffold1804 WUBlastX DNA_hAT-Blackja 283542 284006 82 + . . scaffold1804 GLEAN mRNA 280197 286439 0.354697 + . ID=CGI_10013383; scaffold1743 WUBlastX DNA_TcMar-Marin 163692 163979 80 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX DNA_Kolobok-IS4 92180 92608 97 - . . . . . -1 -1 -1 . . . C26402 WUBlastX LINE_L1 3478 3867 84 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_Jockey 35300 35356 31 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_TcMar-Marin 1073034 1073150 29 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_MuDR 795598 795894 24 - . . scaffold1301 GLEAN mRNA 795655 798380 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 795598 795894 24 - . . scaffold1301 GLEAN mRNA 781075 819646 0.518044 + . ID=CGI_10027743; scaffold301 WUBlastX LINE_Penelope 627134 627715 63 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 812260 812619 89 + . . scaffold433 GLEAN mRNA 810817 827461 0.351164 + . ID=CGI_10027093; scaffold386 WUBlastX LINE_RTE-X 167323 167457 44 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_RTE-X 175047 175199 34 - . . . . . -1 -1 -1 . . . scaffold787 WUBlastX LINE_RTE-X 209400 209594 76 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-BovB 1100302 1100451 82 + . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_L1 91309 91344 20 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold1066 WUBlastX LINE_RTE-X 44428 44670 42 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L1-Tx1 267425 268126 73 + . . scaffold501 GLEAN mRNA 267968 268585 0.999995 + . ID=CGI_10027511; scaffold1333 WUBlastX LINE_L1-Tx1 158582 159139 58 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1-Tx1 199405 199698 91 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_Telomeric 103993 104394 24 + . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 49545 49769 154 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1-Tx1 412313 412999 63 - . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX LTR_Gypsy-Cigr 7165 7650 124 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Gypsy 53447 53656 93 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold1687 WUBlastX DNA_Academ 187669 187857 56 - . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX DNA_Academ 188008 188160 41 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_CR1-L2 39891 40253 101 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_CR1-L2 66936 67322 90 + . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_CR1 215269 215895 63 + . . scaffold43702 GLEAN mRNA 215134 215346 0.618241 + . ID=CGI_10011914; scaffold43702 WUBlastX LINE_CR1 215269 215895 63 + . . scaffold43702 GLEAN mRNA 215243 218046 1 - . ID=CGI_10011915; scaffold453 WUBlastX LTR_Ngaro 64822 65187 129 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_DIRS 456522 456908 102 + . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LTR_DIRS 456913 457107 29 + . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold834 WUBlastX LTR_Gypsy 56677 56883 45 - . . . . . -1 -1 -1 . . . scaffold43366 WUBlastX LTR_Gypsy 80443 80535 21 + . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_IS4EU 27044 27274 97 + . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_Harbinger 226256 226609 146 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX DNA_Harbinger 546214 546444 112 - . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_Gypsy 50125 50358 35 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold962 WUBlastX DNA_MuDR 99956 100270 69 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_MuDR 100495 100749 63 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_MuDR 874958 875068 32 - . . scaffold619 GLEAN mRNA 870805 880758 0.920529 - . ID=CGI_10025790; scaffold760 WUBlastX LINE_Penelope 50078 50308 65 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 98923 99558 114 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold100 WUBlastX LINE_RTE-X 1058725 1059006 116 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_RTE-X 227286 227561 56 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_RTE-X 227767 227832 30 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_PiggyBac 424041 424406 55 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_RTE-BovB 633193 633675 113 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 664457 664804 124 - . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX DNA_TcMar-Tc1 2524 2697 100 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1-Tx1 1703540 1703959 51 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_L2 66214 66546 59 + . . scaffold448 GLEAN mRNA 53576 85492 0.998765 + . ID=CGI_10024929; scaffold30716 WUBlastX LINE_L2 250 441 46 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L2 28431 28877 36 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_L2-Hydra 200595 200630 20 + . . . . . -1 -1 -1 . . . scaffold42236 WUBlastX DNA_hAT 126361 126456 54 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 126644 127126 127 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold760 WUBlastX DNA_hAT 790746 791363 132 + . . . . . -1 -1 -1 . . . C29388 WUBlastX LTR_Gypsy-Cigr 3837 4310 153 + . . C29388 GLEAN mRNA 1255 5572 0.998536 + . ID=CGI_10000526; scaffold1634 WUBlastX LTR_Ngaro 83395 83745 90 - . . scaffold1634 GLEAN mRNA 82464 85496 0.992943 + . ID=CGI_10005152; scaffold1267 WUBlastX LTR_Ngaro 450820 451128 100 - . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LTR_Ngaro 128072 128506 145 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 323482 323829 126 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold501 WUBlastX LTR_Gypsy 1231182 1231298 64 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1368680 1368787 37 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 404641 404691 21 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_I 14524 14652 20 - . . . . . -1 -1 -1 . . . scaffold40264 WUBlastX LINE_L1 49437 49472 20 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold1785 WUBlastX LINE_L1-Tx1 622945 623277 146 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L1 202625 202711 41 - . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX LINE_Penelope 519 950 106 - . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX LINE_Penelope 1925 2356 106 - . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX DNA_MuDR 86424 86912 92 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_Penelope 1288665 1289060 123 - . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_LOA 47983 48765 76 + . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX LINE_Penelope 32550 32768 72 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 513626 513886 29 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_RTE-X 83331 83426 25 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_RTE-X 222981 223511 35 + . . . . . -1 -1 -1 . . . scaffold41988 WUBlastX DNA_PiggyBac 97016 97261 46 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1368459 1368581 31 + . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX DNA_TcMar-Tc2 191409 192149 132 + . . scaffold43932 GLEAN mRNA 184217 200506 0.993526 + . ID=CGI_10014122; scaffold32 WUBlastX DNA_TcMar-Marin 54445 55005 86 + . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX DNA_TcMar-Tc1 26345 26623 73 - . . scaffold1789 GLEAN mRNA 24055 30627 0.651132 - . ID=CGI_10003176; scaffold1673 WUBlastX LTR_Gypsy-Troyk 283010 283072 49 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Gypsy-Troyk 283084 283281 25 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Gypsy-Troyk 283260 283394 53 - . . . . . -1 -1 -1 . . . scaffold35358 WUBlastX LTR_Pao 3222 3530 174 + . . . . . -1 -1 -1 . . . scaffold998 WUBlastX LTR_Pao 42989 43180 134 - . . . . . -1 -1 -1 . . . scaffold998 WUBlastX LTR_Pao 43180 43302 29 - . . . . . -1 -1 -1 . . . scaffold43036 WUBlastX LTR_Pao 27045 27152 123 - . . scaffold43036 GLEAN mRNA 24277 27152 1 - . ID=CGI_10008493; scaffold962 WUBlastX LINE_CR1-L2 1125444 1125770 122 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_L2 92178 92381 37 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Gypsy 134016 134819 84 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 141670 142131 60 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1134685 1135227 101 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1018 WUBlastX LTR_Gypsy-Cigr 231491 231967 137 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 9591 10073 157 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 46388 46594 118 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 47133 47654 56 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy 174798 174998 47 - . . . . . -1 -1 -1 . . . scaffold38920 WUBlastX DNA_hAT-Ac 62924 63178 176 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_R2-Hero 276659 276820 31 + . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 130615 130866 43 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX DNA_Harbinger 492981 493127 62 + . . scaffold394 GLEAN mRNA 488659 515899 0.813951 - . ID=CGI_10022088; scaffold394 WUBlastX DNA_Harbinger 493368 493526 48 + . . scaffold394 GLEAN mRNA 488659 515899 0.813951 - . ID=CGI_10022088; scaffold292 WUBlastX DNA_TcMar-Marin 37904 38086 28 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold1095 WUBlastX LINE_Penelope 5846 6112 115 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX DNA_Merlin 51159 51431 128 - . . scaffold459 GLEAN mRNA 48177 82844 0.45554 + . ID=CGI_10018167; scaffold896 WUBlastX LINE_L1 28971 29468 102 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 188754 188795 22 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1 318256 318480 23 + . . . . . -1 -1 -1 . . . C29498 WUBlastX LINE_L1-Tx1 1804 1998 147 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_RTE-X 127585 127923 111 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 1225840 1226142 111 - . . scaffold1009 GLEAN mRNA 1197147 1238817 0.350484 + . ID=CGI_10028788; scaffold453 WUBlastX LINE_RTE-X 176702 177334 47 + . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LINE_L1-Tx1 160965 161459 89 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1 56434 56664 96 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_hAT-Blackja 119729 120112 58 + . . scaffold94 GLEAN mRNA 111860 132138 0.804225 + . ID=CGI_10013913; C30848 WUBlastX LTR_Gypsy 1195 2517 987 + . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_L1-Tx1 196487 198496 750 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_RTE-BovB 237133 238218 622 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 802927 803103 27 + . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX LTR_Gypsy-Cigr 14792 15484 209 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold664 WUBlastX DNA_Sola 215463 216107 145 + . . scaffold664 GLEAN mRNA 213415 231457 0.897817 + . ID=CGI_10021440; scaffold1817 WUBlastX LINE_CR1-L2 5627 6505 647 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 39945 40205 136 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 237961 238650 365 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 239038 239997 619 - . . . . . -1 -1 -1 . . . scaffold36 WUBlastX LTR_Gypsy 5546 6976 408 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; C31370 WUBlastX LTR_Gypsy 5254 5574 357 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_L2 617470 618390 563 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; C29558 WUBlastX LTR_Gypsy 5870 6460 498 - . . . . . -1 -1 -1 . . . scaffold1167 WUBlastX LTR_Gypsy 60 1037 1062 - . . . . . -1 -1 -1 . . . scaffold18 WUBlastX DNA_hAT-Tip100 2353 2478 41 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Ngaro 8496 8537 34 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX DNA_IS4EU 48294 48683 133 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 200618 201220 147 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 715010 715111 26 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold37968 WUBlastX LINE_L1 9815 9940 26 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 90554 90781 57 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold896 WUBlastX LINE_L1-Tx1 47541 47795 40 + . . scaffold896 GLEAN mRNA 45378 49645 0.962391 - . ID=CGI_10022830; scaffold469 WUBlastX LINE_RTE-X 377123 377338 72 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_RTE-X 377364 377576 45 + . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX LINE_RTE-X 222725 222937 45 - . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX LINE_RTE-X 222963 223178 72 - . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_R2 112588 112815 36 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold41082 WUBlastX LINE_Proto2 57187 57345 47 - . . . . . -1 -1 -1 . . . scaffold40208 WUBlastX LINE_RTE-X 84498 85040 99 + . . scaffold40208 GLEAN mRNA 72712 87059 0.842413 + . ID=CGI_10003956; scaffold1191 WUBlastX LINE_RTE-X 19705 20397 101 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_RTE-X 57070 57498 114 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 774153 774281 38 - . . scaffold1189 GLEAN mRNA 763568 774596 0.392072 + . ID=CGI_10023832; scaffold358 WUBlastX LINE_RTE-X 137155 137307 68 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold580 WUBlastX LINE_RTE-X 25871 26269 93 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_TcMar-Tc1 188245 188838 120 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L1-Tx1 564194 564232 24 + . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LTR_Gypsy 26833 27033 75 - . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_L1-Tx1 21062 23302 713 - . . . . . -1 -1 -1 . . . scaffold1559 WUBlastX LINE_CR1-L2 56418 56984 349 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Ngaro 30141 30833 441 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 30819 31421 470 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold631 WUBlastX LINE_L1-Tx1 148797 149075 69 - . . . . . -1 -1 -1 . . . C25274 WUBlastX LTR_Gypsy 3 1475 1047 + . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX LTR_Ngaro 6054 7679 1037 + . . scaffold36794 GLEAN mRNA 3731 8474 0.499919 + . ID=CGI_10002119; scaffold443 WUBlastX LTR_Gypsy 117044 117817 451 + . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LINE_L2 215363 216193 401 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LINE_L2 216195 217013 574 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LTR_Gypsy 154125 155621 1057 + . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX DNA_hAT-Tip100 2533 4779 1041 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_CR1 51984 52337 154 + . . scaffold753 GLEAN mRNA 36571 68340 0.958809 + . ID=CGI_10014195; scaffold1329 WUBlastX LINE_L2 197295 197444 76 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L2 197909 198064 36 - . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LINE_CR1-L2 7292 7678 44 + . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LINE_CR1-L2 8174 8344 74 + . . . . . -1 -1 -1 . . . scaffold722 WUBlastX LINE_CR1-L2 299748 299975 54 + . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LINE_CR1-L2 170899 171075 20 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1260 WUBlastX DNA_Academ 101529 101876 27 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101529 101876 27 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold1866 WUBlastX LINE_CR1 225114 225218 29 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold99 WUBlastX LINE_L2 436968 437594 127 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L2 262742 262819 26 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 206 478 111 - . . . . . -1 -1 -1 . . . scaffold38672 WUBlastX LTR_Gypsy 238 792 135 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy 155378 156295 75 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1153599 1153703 26 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Ngaro 110016 110396 45 - . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold1512 WUBlastX DNA_IS4EU 70540 71037 153 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_Harbinger 662047 662271 40 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_Harbinger 102192 102791 76 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Gypsy 310723 311637 121 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_L1 255734 256153 155 + . . . . . -1 -1 -1 . . . scaffold33846 WUBlastX LINE_L1 13255 14064 129 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_RTE-X 384282 384620 85 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 737132 737248 59 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Maverick 171854 172258 136 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 28877 29677 142 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1-Tx1 143862 144440 108 - . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX LTR_Pao 70822 71130 120 - . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX LTR_Pao 71966 72307 274 - . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX LTR_Pao 73865 74383 26 - . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy 64759 66339 1022 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 66854 67153 120 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold58 WUBlastX LINE_RTE-X 715451 717127 803 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_RTE-X 717126 717569 67 - . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LTR_Ngaro 67807 69393 1087 + . . . . . -1 -1 -1 . . . scaffold40 WUBlastX DNA_Academ 255655 257373 533 - . . scaffold40 GLEAN mRNA 252666 257460 0.323172 - . ID=CGI_10015106; scaffold40 WUBlastX DNA_Academ 258453 258503 23 - . . . . . -1 -1 -1 . . . scaffold40 WUBlastX DNA_Academ 259061 259558 185 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LTR_Gypsy 30584 30829 242 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_CR1-L2 47338 47877 106 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 666132 666581 226 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 78055 78789 102 - . . . . . -1 -1 -1 . . . C35068 WUBlastX LTR_Copia 17160 17633 187 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_L2 242129 242632 154 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LINE_L2 43450 43680 124 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LINE_L2 44029 44190 41 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 60583 60726 37 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_En-Spm 614440 614646 67 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold4 WUBlastX LTR_DIRS 200600 200734 45 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 324305 324409 20 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_IS4EU 342404 342700 49 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX DNA_Kolobok 895732 896061 94 + . . scaffold392 GLEAN mRNA 895046 896088 1 + . ID=CGI_10024238; scaffold1014 WUBlastX DNA_NOF 61630 62025 184 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_Penelope 279315 280328 26 - . . scaffold502 GLEAN mRNA 265921 292012 0.339102 + . ID=CGI_10024318; scaffold502 WUBlastX LINE_Penelope 280349 280522 28 - . . scaffold502 GLEAN mRNA 265921 292012 0.339102 + . ID=CGI_10024318; scaffold41174 WUBlastX LINE_RTE-X 61484 62086 103 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold1772 WUBlastX LINE_RTE-RTE 253797 253892 25 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_RTE-X 463129 463560 56 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-X 519516 519920 123 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_RTE-X 246410 247060 68 + . . scaffold751 GLEAN mRNA 235635 247422 0.327254 - . ID=CGI_10017389; scaffold1703 WUBlastX LINE_RTE-X 678307 678486 119 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 167502 167954 60 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_TcMar-Tc1 533361 533777 171 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 436350 436676 200 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 981445 981996 151 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LTR_Gypsy 297286 299151 349 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_hAT-Tip100 261664 261939 155 + . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_hAT-Tip100 261939 263069 693 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 1257592 1257936 169 + . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 18303 19022 307 - . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LTR_Gypsy 273065 275749 1050 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_RTE-X 313191 316439 986 - . . scaffold753 GLEAN mRNA 307757 329663 0.499275 + . ID=CGI_10014210; C32888 WUBlastX LINE_CR1-L2 11964 12146 72 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L2 822680 822952 28 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 251794 251973 43 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 252926 253201 45 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_DIRS 180544 181164 86 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_DIRS 181583 181804 57 + . . . . . -1 -1 -1 . . . scaffold823 WUBlastX LTR_Ngaro 39465 39581 33 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 32261 32392 110 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold1181 WUBlastX LTR_Ngaro 35515 35937 206 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_DIRS 150747 151052 28 - . . . . . -1 -1 -1 . . . scaffold33618 WUBlastX LTR_DIRS 5570 6124 151 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Gypsy-Cigr 34274 35053 166 - . . scaffold40440 GLEAN mRNA 16484 36402 0.811713 + . ID=CGI_10004142; scaffold1732 WUBlastX LTR_Gypsy-Cigr 53496 54275 162 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 597422 598033 203 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold1353 WUBlastX LINE_I 19946 20047 29 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_Penelope 1289126 1289215 26 - . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_L1-Tx1 156208 156438 124 + . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_RTE-X 656944 657252 63 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_RTE-X 173784 174224 65 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold41816 WUBlastX LINE_RTE-X 85874 86014 38 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold531 WUBlastX LINE_RTE-X 18466 18720 26 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LINE_RTE-X 19853 20032 58 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_TcMar-Tc2 162470 163117 194 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold1337 WUBlastX DNA_TcMar-Tc1 228493 228786 46 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LINE_L2 178499 180631 819 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Pao 218237 219460 1352 + . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX LTR_Gypsy 80297 81070 402 - . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold392 WUBlastX LTR_Pao 844989 846725 1372 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 25693 29223 1288 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Gypsy 212019 212528 300 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold756 WUBlastX LINE_L2 421292 421531 32 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 421536 422210 308 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 422207 422722 313 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 422676 423317 373 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 423338 423742 143 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold482 WUBlastX LINE_L2 215049 215702 66 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L2 150167 150664 128 - . . scaffold1896 GLEAN mRNA 122415 155765 0.274309 - . ID=CGI_10019635; scaffold332 WUBlastX LINE_CR1-L2 66147 66620 170 - . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX LINE_L1 51547 51585 22 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy-Cigr 419290 419994 196 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy-Cigr 613835 614584 184 - . . . . . -1 -1 -1 . . . scaffold39960 WUBlastX LTR_Gypsy-Cigr 25228 25764 201 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LTR_DIRS 125014 125442 175 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Ngaro 457846 458469 155 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 371069 371167 21 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX DNA_IS4EU 48262 48516 33 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX DNA_Kolobok-IS4 526370 526582 71 - . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_Kolobok-IS4 526370 526582 71 - . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold365 WUBlastX DNA_Kolobok 285656 285739 32 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold1737 WUBlastX LINE_Penelope 273704 273955 35 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_L2 29181 30005 130 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L2 63943 63999 37 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LINE_RTE-BovB 52585 52650 22 - . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 71863 72399 203 + . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_RTE-X 3226 3576 171 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 675748 676218 62 + . . . . . -1 -1 -1 . . . scaffold37032 WUBlastX LINE_RTE-X 20 385 99 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 507460 509205 1064 - . . . . . -1 -1 -1 . . . scaffold36642 WUBlastX LTR_Gypsy 31151 31858 409 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LTR_Pao 224664 224849 62 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_L2 293719 295404 120 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_CR1 438681 439433 136 - . . . . . -1 -1 -1 . . . scaffold39028 WUBlastX LTR_Gypsy 2484 2879 172 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 608776 609252 166 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX RC_Helitron 573203 573913 208 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 948886 949593 185 + . . scaffold3 GLEAN mRNA 946459 958838 0.555132 + . ID=CGI_10027316; scaffold973 WUBlastX LTR_Gypsy 303474 303932 202 + . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LINE_RTE-BovB 87138 87305 26 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 1207390 1207683 71 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-X 831686 832177 183 - . . scaffold271 GLEAN mRNA 809860 849502 0.997113 - . ID=CGI_10024500; scaffold40960 WUBlastX LINE_RTE-X 6950 7279 162 - . . scaffold40960 GLEAN mRNA 4964 19748 0.995292 - . ID=CGI_10004560; C28802 WUBlastX DNA_Sola 5678 5914 88 - . . . . . -1 -1 -1 . . . scaffold35180 WUBlastX LINE_L1-Tx1 17169 18098 150 - . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; C24000 WUBlastX LINE_L1-Tx1 4 2517 1255 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy-Cigr 121230 122630 732 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 92297 92629 99 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 93637 93852 59 - . . . . . -1 -1 -1 . . . scaffold38904 WUBlastX RC_Helitron 39933 42611 620 - . . . . . -1 -1 -1 . . . scaffold38904 WUBlastX RC_Helitron 42802 42954 103 - . . . . . -1 -1 -1 . . . scaffold38904 WUBlastX RC_Helitron 42947 43450 309 - . . . . . -1 -1 -1 . . . scaffold38904 WUBlastX RC_Helitron 43418 44101 540 - . . . . . -1 -1 -1 . . . C33482 WUBlastX LINE_CR1-L2 4730 4942 60 + . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_CR1 89747 90139 95 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy-Cigr 568699 568848 82 - . . . . . -1 -1 -1 . . . scaffold36190 WUBlastX DNA_Crypton 28397 28837 80 - . . . . . -1 -1 -1 . . . scaffold36190 WUBlastX DNA_Crypton 28813 29001 41 - . . . . . -1 -1 -1 . . . scaffold465 WUBlastX DNA_Kolobok-IS4 69971 70180 61 + . . . . . -1 -1 -1 . . . scaffold37900 WUBlastX DNA_IS4EU 30711 31661 131 - . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold610 WUBlastX LTR_Gypsy 833 1066 123 + . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_Penelope 81558 81584 22 + . . . . . -1 -1 -1 . . . scaffold41082 WUBlastX LINE_Proto2 57458 58084 88 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_TcMar-Tigge 410678 410764 28 - . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1-Tx1 115459 116337 547 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1-Tx1 116373 117572 369 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-BovB 600548 602230 1551 + . . scaffold601 GLEAN mRNA 586023 611758 0.912594 - . ID=CGI_10026838; scaffold39500 WUBlastX LTR_Gypsy 18354 18935 266 - . . . . . -1 -1 -1 . . . scaffold39500 WUBlastX LTR_Gypsy 18919 19503 377 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy-Cigr 610150 612750 1553 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy 166894 167334 348 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy 167367 167933 296 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold1020 WUBlastX LINE_L2 133176 134231 20 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L2 134254 134376 71 - . . . . . -1 -1 -1 . . . C25596 WUBlastX LINE_CR1-L2 3165 3248 22 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_CR1-L2 341303 341653 79 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 113322 114005 183 - . . . . . -1 -1 -1 . . . C35794 WUBlastX LINE_L2 14142 14291 25 - . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_Ngaro 55174 55320 28 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold1094 WUBlastX LTR_Gypsy 589818 590213 215 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX DNA_IS4EU 228692 228826 29 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX DNA_hAT-Tip100 640378 640797 137 + . . . . . -1 -1 -1 . . . scaffold1140 WUBlastX LINE_Penelope 1582 1680 24 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Gypsy 31758 32093 30 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_PiggyBac 205433 205816 137 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_PiggyBac 205978 206076 51 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 763113 763649 132 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 708852 709013 48 - . . . . . -1 -1 -1 . . . scaffold43664 WUBlastX LINE_RTE-X 213981 214649 136 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold39212 WUBlastX DNA_Sola 45469 45954 213 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold1301 WUBlastX LTR_Ngaro 316598 317287 142 + . . scaffold1301 GLEAN mRNA 311038 320027 0.984699 - . ID=CGI_10027714; scaffold1350 WUBlastX LTR_Ngaro 223558 224247 142 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX LTR_Gypsy-Cigr 97541 97909 132 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX LTR_Gypsy-Cigr 98905 100188 945 - . . . . . -1 -1 -1 . . . C30608 WUBlastX LTR_Gypsy 2073 2480 372 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 625536 625952 252 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold33958 WUBlastX LTR_Gypsy-Cigr 9907 13569 1612 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 17749 19260 119 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 20587 20703 50 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LTR_Pao 148478 148798 33 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy-Cigr 42847 43137 139 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_CR1-L2 110893 111312 188 + . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_L2 188273 188380 70 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold522 WUBlastX LTR_Gypsy 557542 557715 40 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold1714 WUBlastX LTR_Gypsy 70260 70619 239 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX DNA_Merlin 144575 144967 167 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 255994 257421 132 - . . . . . -1 -1 -1 . . . scaffold1247 WUBlastX DNA_TcMar-Tc1 113688 113966 39 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold42086 WUBlastX LINE_RTE-BovB 130010 130378 208 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 1710848 1711042 129 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 1711044 1711241 88 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LINE_RTE-X 4108 4758 97 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_TcMar-Marin 308076 308282 138 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Copia 513297 513485 83 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Copia 513485 513769 118 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Copia 513776 514960 803 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Copia 515388 516833 849 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 40021 41112 836 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 41259 42377 731 + . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_CR1-L2 9217 9771 208 + . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_CR1-L2 3457 3918 156 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold172 WUBlastX LINE_L2 44499 44603 28 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 83389 83613 27 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_DIRS 176952 177794 186 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Ngaro 520998 521693 201 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Ngaro 277562 277888 68 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 393454 393603 37 + . . . . . -1 -1 -1 . . . scaffold707 WUBlastX DNA_Harbinger 49201 49659 107 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold35 WUBlastX DNA_Harbinger 4209 4589 193 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_Harbinger 196641 197021 193 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_hAT-hATw 348542 348853 21 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 224755 225039 47 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_TcMar-Tc1 407756 408076 68 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_TcMar-Tc1 408151 408456 117 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_L2 246237 246788 215 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_L1 361966 362691 237 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_PiggyBac 517369 517539 84 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_PiggyBac 518370 518819 87 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Foamy 201018 201176 23 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_TcMar-Tc1 985024 985446 218 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LTR_Gypsy 167105 168508 1245 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LTR_Gypsy 168556 169332 617 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Gypsy 321804 321935 46 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_L2 408258 408905 186 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_L2 408910 411123 1263 + . . . . . -1 -1 -1 . . . scaffold33958 WUBlastX LTR_Gypsy 4425 7847 1856 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy-Cigr 693471 694277 689 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-X 436668 437714 570 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-X 437680 438354 491 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-X 438366 439646 550 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-X 439670 439912 117 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_CR1-L2 565767 566633 75 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold973 WUBlastX LTR_Gypsy 318605 318748 59 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_R2-Hero 309980 310156 82 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX DNA_Kolobok-IS4 138840 139592 162 + . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX DNA_Kolobok-IS4 39295 39849 77 + . . . . . -1 -1 -1 . . . scaffold1492 WUBlastX LINE_L1-Tx1 84196 84420 61 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1 161417 161629 24 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_TcMar-Tc1 180763 181167 88 - . . scaffold31 GLEAN mRNA 167305 183497 0.965717 + . ID=CGI_10013560; scaffold31 WUBlastX DNA_TcMar-Tc1 181135 181413 43 - . . scaffold31 GLEAN mRNA 167305 183497 0.965717 + . ID=CGI_10013560; scaffold1589 WUBlastX DNA_PiggyBac 242292 242402 77 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-X 224945 225565 66 - . . . . . -1 -1 -1 . . . scaffold287 WUBlastX LINE_RTE-X 32051 32779 170 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 539349 539657 105 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_Gypsy 127106 127399 146 - . . . . . -1 -1 -1 . . . scaffold1867 WUBlastX LINE_L2 44613 44774 88 - . . . . . -1 -1 -1 . . . scaffold1867 WUBlastX LINE_L2 45122 45472 142 - . . . . . -1 -1 -1 . . . scaffold1867 WUBlastX LINE_L2 45484 45630 36 - . . . . . -1 -1 -1 . . . scaffold31920 WUBlastX LTR_Pao 1 306 251 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_Pao 174518 174874 250 - . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_Gypsy 140570 140617 24 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold852 WUBlastX LTR_Ngaro 169586 170152 172 - . . scaffold852 GLEAN mRNA 154892 173695 0.933872 + . ID=CGI_10012040; scaffold1647 WUBlastX LTR_Gypsy 102519 102665 28 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_IS4EU 279694 279903 43 - . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 279694 279903 43 - . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold394 WUBlastX RC_Helitron 107995 108132 106 - . . . . . -1 -1 -1 . . . scaffold1001 WUBlastX DNA_Harbinger 146351 146740 240 - . . . . . -1 -1 -1 . . . C25336 WUBlastX DNA_Harbinger 264 380 101 - . . . . . -1 -1 -1 . . . C25336 WUBlastX DNA_Harbinger 588 998 131 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_L1-Tx1 76317 77120 194 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_RTE-X 239252 239476 45 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LINE_RTE-X 533477 534232 201 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-BovB 283464 283772 187 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 484421 484756 131 + . . . . . -1 -1 -1 . . . C30292 WUBlastX LTR_Ngaro 1494 2396 94 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX DNA_Sola 12373 12570 27 - . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX DNA_TcMar-Tc1 129491 129838 107 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX DNA_TcMar-Tc1 180989 181369 74 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_L1-Tx1 214978 216795 999 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_CR1 27592 27912 145 - . . scaffold38626 GLEAN mRNA 19577 33145 1 - . ID=CGI_10002868; scaffold750 WUBlastX LTR_Ngaro 537889 538512 132 + . . . . . -1 -1 -1 . . . scaffold1087 WUBlastX LTR_Gypsy 11230 11994 265 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold192 WUBlastX LTR_Gypsy 713535 713624 26 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 1020675 1021475 245 + . . . . . -1 -1 -1 . . . scaffold1596 WUBlastX DNA_hAT-Ac 2596 3276 132 + . . . . . -1 -1 -1 . . . scaffold1596 WUBlastX DNA_hAT-Ac 3689 3826 101 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 135792 135953 29 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold358 WUBlastX DNA_Kolobok-IS4 21108 21764 257 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_Kolobok-IS4 69195 69683 262 - . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX LINE_L1-Tx1 143240 144130 174 - . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LINE_L2 141753 142160 60 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L2 794623 795030 60 - . . . . . -1 -1 -1 . . . scaffold40050 WUBlastX LINE_RTE-X 52383 52760 167 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_RTE-X 657287 657724 92 + . . . . . -1 -1 -1 . . . scaffold1835 WUBlastX LINE_RTE-BovB 317322 317636 170 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy-Cigr 801529 801630 41 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 18345 18437 52 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 19074 19703 640 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 20830 21495 446 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy-Cigr 402108 403010 577 + . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LTR_Pao 487866 488789 622 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 747244 748164 643 - . . . . . -1 -1 -1 . . . scaffold1503 WUBlastX DNA_TcMar-Tc1 57003 57263 164 - . . scaffold1503 GLEAN mRNA 55967 67698 1 + . ID=CGI_10009528; scaffold354 WUBlastX LTR_DIRS 748360 748476 46 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Ngaro 148966 149409 218 + . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_RTE-X 657055 657279 163 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_RTE-X 555188 556096 57 + . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 556465 556584 22 + . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 556620 556757 43 + . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 556772 557020 27 + . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold395 WUBlastX LTR_Gypsy 52000 52122 59 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy 52130 52456 155 + . . . . . -1 -1 -1 . . . scaffold40744 WUBlastX LINE_L1-Tx1 91092 91934 82 + . . scaffold40744 GLEAN mRNA 90916 94422 0.882871 + . ID=CGI_10004380; scaffold1885 WUBlastX LINE_L1-Tx1 364710 365627 124 + . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold481 WUBlastX LINE_L2 1216164 1216901 173 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1209 WUBlastX DNA_En-Spm 112071 112589 250 + . . scaffold1209 GLEAN mRNA 106847 123923 0.38603 - . ID=CGI_10007967; scaffold789 WUBlastX LTR_Gypsy 307090 307167 43 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 287912 288838 274 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_RTE-X 218081 218431 121 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX LINE_RTE-X 70083 70562 55 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold425 WUBlastX LINE_RTE-BovB 623085 623522 59 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 623392 624594 37 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_Maverick 320861 321097 66 - . . . . . -1 -1 -1 . . . scaffold752 WUBlastX LINE_RTE-X 45360 46346 186 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-X 210169 210432 189 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 642343 642567 36 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L1-Tx1 50595 50819 95 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold39028 WUBlastX LTR_Gypsy-Cigr 3797 4105 80 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_L2 167853 168410 105 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_PiggyBac 453832 454296 130 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Ngaro 367646 368350 139 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 64382 64912 84 - . . . . . -1 -1 -1 . . . scaffold32786 WUBlastX DNA_Kolobok-IS4 7219 8379 167 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_Penelope 131230 131631 105 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_TcMar-Marin 308464 308772 156 + . . . . . -1 -1 -1 . . . scaffold1506 WUBlastX LINE_RTE-X 48501 48776 119 - . . . . . -1 -1 -1 . . . scaffold1506 WUBlastX LINE_RTE-X 49581 50144 146 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-RTE 591365 591829 117 - . . . . . -1 -1 -1 . . . scaffold596 WUBlastX DNA_TcMar-Tc1 213833 214309 200 - . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold1627 WUBlastX LTR_Gypsy 35952 36656 329 + . . . . . -1 -1 -1 . . . scaffold38290 WUBlastX LTR_Copia 2856 4526 1192 + . . . . . -1 -1 -1 . . . scaffold38290 WUBlastX LTR_Copia 4965 6407 973 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LTR_Gypsy 61715 63148 994 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 306750 307508 538 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LTR_Pao 274069 274434 27 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold1001 WUBlastX LINE_L2 26698 27627 239 + . . scaffold1001 GLEAN mRNA 4766 38685 0.672255 - . ID=CGI_10007116; scaffold564 WUBlastX LINE_CR1 223831 223920 23 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_I 555383 556429 259 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L2 511258 511317 22 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold828 WUBlastX DNA_TcMar-Fot1 171714 172358 199 - . . scaffold828 GLEAN mRNA 167866 174886 0.999415 - . ID=CGI_10007370; scaffold1710 WUBlastX LINE_RTE-X 51875 52207 129 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX DNA_TcMar-Tc1 15814 16194 100 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LINE_L1-Tx1 95666 96454 226 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_CR1 50184 50336 78 + . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LINE_L2 706512 706784 29 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L2 28520 29068 157 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_Kolobok-IS4 210524 211192 299 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-BovB 368649 368735 48 - . . scaffold1322 GLEAN mRNA 366517 374727 0.833191 + . ID=CGI_10019476; scaffold1093 WUBlastX LINE_L1-Tx1 43245 43511 21 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 136672 136782 25 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 112544 112906 202 + . . . . . -1 -1 -1 . . . C25116 WUBlastX LTR_Ngaro 1 528 311 + . . . . . -1 -1 -1 . . . scaffold36790 WUBlastX LTR_Ngaro 26004 26495 177 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold41304 WUBlastX LTR_Ngaro 58430 59158 197 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Gypsy 304792 304971 39 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold163 WUBlastX LINE_RTE-X 78733 78879 67 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Maverick 125857 126492 305 + . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX LINE_RTE-X 51720 52850 220 - . . . . . -1 -1 -1 . . . scaffold1045 WUBlastX RC_Helitron 92725 93600 219 - . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX LTR_Pao 70251 70478 52 - . . . . . -1 -1 -1 . . . scaffold34740 WUBlastX LTR_Ngaro 7209 7601 270 - . . . . . -1 -1 -1 . . . scaffold35732 WUBlastX LINE_RTE-X 2040 3056 198 - . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX DNA_Zator 10306 10392 40 - . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX DNA_Zator 10380 10928 287 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_L2 44317 45039 206 + . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_L2 45168 45470 24 + . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LTR_Ngaro 27322 27789 342 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Ngaro 711388 711738 55 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Ngaro 711684 712127 166 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Gypsy 291448 291801 232 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy-Cigr 799116 799787 261 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold747 WUBlastX DNA_Harbinger 372689 373312 320 + . . . . . -1 -1 -1 . . . scaffold41452 WUBlastX LINE_L2 63164 63433 166 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold1101 WUBlastX LTR_Ngaro 750000 750647 279 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1-Tx1 209609 209719 60 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold99 WUBlastX LINE_RTE-X 436711 437043 65 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Ngaro 454130 454921 323 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 466182 466466 58 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1211317 1211601 91 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LTR_Gypsy 37230 37436 85 - . . scaffold189 GLEAN mRNA 16396 38520 0.48054 + . ID=CGI_10018663; scaffold292 WUBlastX DNA_TcMar-Marin 37402 37758 171 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold681 WUBlastX LTR_Gypsy-Troyk 322568 322906 292 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy-Troyk 322905 322994 74 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L1-Tx1 620016 621206 252 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX DNA_hAT-Tip100 80248 80895 133 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX DNA_hAT-Tip100 81015 81722 182 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 526762 526998 111 + . . . . . -1 -1 -1 . . . scaffold65 WUBlastX LINE_RTE-X 140471 140674 122 + . . . . . -1 -1 -1 . . . scaffold65 WUBlastX LINE_RTE-X 141269 141514 51 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Ngaro 640688 641002 47 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Sola 252915 253199 23 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX DNA_hAT-Tip100 63276 63476 99 + . . . . . -1 -1 -1 . . . scaffold39482 WUBlastX LTR_Pao 46140 46613 43 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX DNA_TcMar-Marin 11328 11708 132 + . . . . . -1 -1 -1 . . . scaffold39790 WUBlastX LINE_Penelope 67014 67268 155 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_CR1 9104 9529 129 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold162 WUBlastX LINE_CR1-L2 304541 304654 37 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_L2 92747 92956 20 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LTR_Gypsy 36344 36448 57 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX DNA_hAT-hATw 524901 525350 165 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX DNA_hAT-hATw 525551 526366 139 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_L1 707631 708377 285 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LINE_L1 183684 183791 20 + . . . . . -1 -1 -1 . . . C31300 WUBlastX LTR_Gypsy 4919 4966 28 - . . . . . -1 -1 -1 . . . scaffold42348 WUBlastX LINE_RTE-X 101640 101801 70 - . . scaffold42348 GLEAN mRNA 96568 107151 0.643244 - . ID=CGI_10006683; scaffold672 WUBlastX DNA_TcMar-Tc1 560295 560948 221 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 600251 600427 75 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 391970 392923 358 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold522 WUBlastX LTR_Gypsy 556642 556986 172 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold226 WUBlastX LTR_Gypsy 921398 921721 173 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold481 WUBlastX DNA_IS4EU 1223253 1224059 359 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1599 WUBlastX DNA_IS4EU 559400 560143 343 - . . scaffold1599 GLEAN mRNA 554525 590190 0.924419 + . ID=CGI_10027152; scaffold1097 WUBlastX LINE_L1 155302 155592 104 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_CR1-L2 150112 150387 65 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_CR1-L2 151789 151884 41 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Pao 102307 103119 225 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 498961 499164 72 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 163931 164494 154 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1 559839 561107 258 + . . . . . -1 -1 -1 . . . C26726 WUBlastX DNA_TcMar-Tc1 185 469 31 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 368480 368851 108 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368480 368851 108 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold1785 WUBlastX LINE_RTE-X 22792 23715 162 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold753 WUBlastX LINE_RTE-X 151467 152114 221 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_RTE-X 152149 152586 49 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_TcMar-Tc1 412237 412956 306 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 49393 50244 362 - . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy 51097 51372 25 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Ngaro 437925 438860 242 + . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX LTR_Gypsy 52567 52959 194 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold39972 WUBlastX LTR_Gypsy 53536 53775 155 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold630 WUBlastX DNA_hAT-Ac 332446 333987 309 - . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX DNA_IS4EU 16883 17677 368 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_L1-Tx1 529876 531030 277 - . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LINE_L1-Tx1 112818 113330 96 + . . . . . -1 -1 -1 . . . C23786 WUBlastX LINE_RTE-X 775 1407 187 - . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_L1-Tx1 100474 101340 70 + . . scaffold42656 GLEAN mRNA 97324 103656 1 - . ID=CGI_10007415; scaffold222 WUBlastX LTR_Pao 86918 87001 23 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 11605 11955 243 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX DNA_IS4EU 96273 96686 47 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX RC_Helitron 107656 108237 307 + . . . . . -1 -1 -1 . . . scaffold43364 WUBlastX LINE_L1-Tx1 16284 17219 148 - . . . . . -1 -1 -1 . . . scaffold43364 WUBlastX LINE_L1-Tx1 17216 17482 127 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LTR_Ngaro 268905 269555 205 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold243 WUBlastX LINE_RTE-BovB 139111 139245 24 - . . . . . -1 -1 -1 . . . scaffold1428 WUBlastX DNA_Sola 13751 14602 320 - . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX LTR_ERV1 18294 18326 21 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 323469 324764 396 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX DNA_Academ 35415 36332 374 + . . scaffold754 GLEAN mRNA 34463 47005 0.401358 + . ID=CGI_10014062; scaffold583 WUBlastX LINE_CR1 745405 746562 216 - . . scaffold583 GLEAN mRNA 741499 750992 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 745405 746562 216 - . . scaffold583 GLEAN mRNA 742000 755299 0.5 + . ID=CGI_10023644; scaffold773 WUBlastX LINE_RTE-X 218476 218835 30 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_L1-Tx1 226266 226862 45 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 318314 318592 46 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 318600 318725 93 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX DNA_hAT-Ac 182953 183165 35 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_IS4EU 172815 173627 106 + . . . . . -1 -1 -1 . . . C22322 WUBlastX LINE_L1 343 933 106 - . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_RTE-X 39210 39647 50 + . . scaffold1283 GLEAN mRNA 32464 43957 1 + . ID=CGI_10011783; scaffold474 WUBlastX LTR_Gypsy 185377 185901 488 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy 387502 388800 349 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_IS4EU 54261 54401 83 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_IS4EU 54448 54804 271 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_IS4EU 54813 54938 94 + . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX LINE_L1 14198 14530 200 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_L1 10000 10299 42 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_L1 72365 72649 37 - . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_L1 73124 74101 314 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_RTE-X 408002 409492 151 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX RC_Helitron 436989 437846 97 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold591 WUBlastX LTR_DIRS 77695 77808 57 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_Harbinger 46586 46765 79 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_Harbinger 46717 47109 189 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_Harbinger 47761 48069 143 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 13665 13874 120 + . . . . . -1 -1 -1 . . . scaffold194 WUBlastX LINE_L1-Tx1 78976 80286 297 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_CR1-L2 713394 714248 334 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 570104 570199 32 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_L1-Tx1 267863 268963 173 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_L1-Tx1 268984 269322 154 - . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX LINE_RTE-X 38292 38855 106 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 642825 643037 27 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 643995 644525 154 - . . . . . -1 -1 -1 . . . scaffold1203 WUBlastX LINE_L2 160166 160321 57 - . . . . . -1 -1 -1 . . . scaffold1203 WUBlastX LINE_L2 160351 161205 344 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Pao 639251 640528 370 + . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 17482 17586 51 - . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 17793 18425 359 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 599454 599528 23 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 87674 87784 77 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 88403 88768 165 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX DNA_TcMar-Tc1 396811 397032 117 + . . scaffold942 GLEAN mRNA 390660 406366 0.734087 - . ID=CGI_10019170; scaffold905 WUBlastX LINE_L1-Tx1 4527 4946 83 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold1097 WUBlastX LTR_Gypsy-Cigr 862480 863040 137 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1026 WUBlastX LINE_L2 7730 8413 432 + . . . . . -1 -1 -1 . . . scaffold1026 WUBlastX LINE_L2 8537 8644 48 + . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX DNA_Merlin 58850 59722 406 + . . . . . -1 -1 -1 . . . scaffold42866 WUBlastX LINE_L1-Tx1 190884 191840 427 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1143404 1143637 82 - . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_L2 118545 119390 373 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_CR1 484796 485872 469 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 16147 16605 108 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_IS4EU 271634 271921 170 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_IS4EU 272171 273181 219 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L1-Tx1 73034 74011 258 + . . scaffold140 GLEAN mRNA 45423 78027 0.362757 - . ID=CGI_10020123; scaffold140 WUBlastX LINE_L1-Tx1 74133 74609 73 + . . scaffold140 GLEAN mRNA 45423 78027 0.362757 - . ID=CGI_10020123; scaffold457 WUBlastX LTR_Gypsy 169521 170657 511 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy-Cigr 90643 90720 31 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Ngaro 300816 301154 168 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_Kolobok-IS4 213218 213433 33 - . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LTR_Gypsy 72550 73026 27 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Marin 260078 260332 99 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Marin 261566 261970 225 + . . . . . -1 -1 -1 . . . scaffold38190 WUBlastX LINE_RTE-X 1932 2411 275 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_TcMar-Tc1 246214 246678 244 + . . . . . -1 -1 -1 . . . scaffold178 WUBlastX LINE_CR1 53207 53956 502 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX DNA_Academ 553335 553481 35 - . . . . . -1 -1 -1 . . . scaffold1592 WUBlastX DNA_hAT-Tip100 98243 99277 481 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX RC_Helitron 277504 279696 310 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_R2-Hero 592341 593225 453 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_R2-Hero 593234 593404 39 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_RTE-X 120146 120304 27 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_RTE-X 120301 120696 120 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_RTE-X 121062 121217 69 - . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1-Tx1 115319 115450 61 + . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L1-Tx1 828924 829265 59 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LINE_L1 131022 131063 22 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold1475 WUBlastX LINE_L1-Tx1 86953 87144 68 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_L1-Tx1 464476 465363 133 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LINE_L1-Tx1 465338 465586 135 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold43064 WUBlastX LINE_RTE-X 19461 20441 440 - . . scaffold43064 GLEAN mRNA 2241 22972 0.292417 + . ID=CGI_10008625; scaffold1360 WUBlastX LINE_RTE-X 644542 644886 101 - . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX LTR_Pao 39282 40409 506 + . . scaffold1440 GLEAN mRNA 38192 43331 1 - . ID=CGI_10008353; C34436 WUBlastX RC_Helitron 3 974 504 - . . . . . -1 -1 -1 . . . C34436 WUBlastX RC_Helitron 1780 1827 35 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LINE_RTE-X 161323 162486 282 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX DNA_Maverick 68454 69371 509 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 514506 515030 105 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Ngaro 465606 465773 112 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Ngaro 466000 466071 48 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Ngaro 466067 466354 239 + . . . . . -1 -1 -1 . . . scaffold38056 WUBlastX LTR_Ngaro 50255 50584 72 + . . . . . -1 -1 -1 . . . C31370 WUBlastX LTR_Gypsy 4262 4876 356 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_En-Spm 190648 191208 379 + . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX LINE_RTE-X 47337 47567 56 - . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L1-Tx1 12481 12726 98 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold1293 WUBlastX LTR_DIRS 89278 90156 394 - . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 24986 25195 126 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 26573 27700 269 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_DIRS 179657 179929 37 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 692245 693264 297 + . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LINE_RTE-X 81978 82163 142 + . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 65707 65943 24 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 1050014 1050928 319 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 1051101 1051712 39 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1343461 1344033 187 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1344036 1344104 28 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1344113 1344715 295 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1344730 1344807 37 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Pao 66072 66479 328 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 67321 67578 220 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1154 WUBlastX LINE_L2 28170 28502 239 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L2 29226 29741 153 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 31181 31726 198 + . . . . . -1 -1 -1 . . . C31762 WUBlastX LINE_L1 7796 8083 77 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_TcMar-Tc1 309718 310719 424 + . . scaffold433 GLEAN mRNA 299282 312708 0.991068 + . ID=CGI_10027062; scaffold317 WUBlastX DNA_hAT-hATw 136804 138024 362 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold619 WUBlastX LINE_RTE-X 765647 766048 154 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 707814 708164 157 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; C23742 WUBlastX LINE_L2 10 765 289 - . . . . . -1 -1 -1 . . . C23742 WUBlastX LINE_L2 803 1375 210 - . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Ngaro 58956 59066 76 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold804 WUBlastX LTR_Gypsy 167352 167408 23 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold100 WUBlastX LTR_Gypsy 828971 829027 23 - . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 57898 58035 26 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 104447 104779 188 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 104760 104843 20 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 105220 105315 22 + . . . . . -1 -1 -1 . . . scaffold39500 WUBlastX LTR_Gypsy 21745 22296 44 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LTR_Gypsy 325151 325276 39 - . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX DNA_Academ 26046 26312 66 + . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX DNA_Academ 26312 27445 581 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_DIRS 8704 10080 427 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_RTE-X 316922 317980 483 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 224046 225794 291 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold34 WUBlastX LINE_Penelope 242022 243626 521 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 67885 68319 94 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_TcMar-Pogo 453588 454577 665 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 128648 129655 353 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1073448 1073597 51 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073807 1073998 154 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold971 WUBlastX LTR_Ngaro 49817 50623 378 + . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX DNA_Maverick 30993 32012 511 - . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX DNA_Maverick 32847 33005 24 - . . scaffold38130 GLEAN mRNA 32205 35051 0.988307 - . ID=CGI_10002637; scaffold42490 WUBlastX LINE_L1-Tx1 63844 64224 33 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX DNA_Maverick 231089 232381 655 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LINE_RTE-BovB 57128 57163 26 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_RTE-X 67526 68185 404 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 543909 544178 54 - . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LTR_Gypsy 83710 84759 328 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 547549 547770 73 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX DNA_Sola 280620 280835 85 + . . scaffold925 GLEAN mRNA 265784 299058 0.996279 - . ID=CGI_10017423; scaffold925 WUBlastX DNA_Sola 281938 282513 342 + . . scaffold925 GLEAN mRNA 265784 299058 0.996279 - . ID=CGI_10017423; scaffold925 WUBlastX DNA_Sola 283613 284236 163 + . . scaffold925 GLEAN mRNA 265784 299058 0.996279 - . ID=CGI_10017423; scaffold286 WUBlastX DNA_Zator 163344 163571 110 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Zator 163614 163781 58 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Zator 163777 164097 216 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Zator 164076 164507 96 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Zator 164756 164992 53 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 1078310 1078507 92 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 281145 282059 134 - . . . . . -1 -1 -1 . . . scaffold36334 WUBlastX LINE_RTE-X 9949 10326 139 - . . . . . -1 -1 -1 . . . scaffold36334 WUBlastX LINE_RTE-X 10329 10580 161 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_L1-Tx1 363068 363538 37 - . . . . . -1 -1 -1 . . . scaffold41732 WUBlastX LINE_RTE-X 57906 58424 303 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold22 WUBlastX LTR_Pao 1072156 1072617 52 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1074783 1074995 83 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold1484 WUBlastX LTR_Ngaro 108110 108457 202 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold1484 WUBlastX LTR_Ngaro 108450 108716 170 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold926 WUBlastX LINE_L1-Tx1 287694 289037 578 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 209915 210334 106 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 50529 50753 48 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Ngaro 9203 9565 59 - . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LTR_Gypsy 80238 81962 710 + . . scaffold206 GLEAN mRNA 57948 87960 0.702119 + . ID=CGI_10011372; scaffold35636 WUBlastX LTR_Gypsy 21022 21642 33 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_Gypsy 21890 22387 303 + . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 33463 33918 55 - . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LTR_Gypsy 66561 67166 525 - . . scaffold1096 GLEAN mRNA 61473 82912 0.788854 + . ID=CGI_10006453; scaffold1096 WUBlastX LTR_Gypsy 67166 67405 102 - . . scaffold1096 GLEAN mRNA 61473 82912 0.788854 + . ID=CGI_10006453; scaffold1096 WUBlastX LTR_Gypsy 68116 68997 157 - . . scaffold1096 GLEAN mRNA 61473 82912 0.788854 + . ID=CGI_10006453; scaffold934 WUBlastX LTR_Gypsy 156908 157576 23 + . . . . . -1 -1 -1 . . . scaffold32230 WUBlastX LTR_Gypsy 5175 5303 20 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Ngaro 458273 459670 590 + . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_Penelope 12130 12570 175 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 621095 621472 317 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold38292 WUBlastX LTR_Ngaro 34942 35952 521 - . . scaffold38292 GLEAN mRNA 26899 37380 0.771739 - . ID=CGI_10002691; scaffold38292 WUBlastX LTR_Ngaro 35916 36203 171 - . . scaffold38292 GLEAN mRNA 26899 37380 0.771739 - . ID=CGI_10002691; scaffold502 WUBlastX LTR_Gypsy 179994 180248 24 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Ngaro 1531690 1532487 473 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LTR_Gypsy 221461 222729 373 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold42490 WUBlastX LINE_L1-Tx1 32126 32551 258 - . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1-Tx1 32810 33685 216 - . . . . . -1 -1 -1 . . . scaffold36748 WUBlastX LINE_L2 6301 6624 52 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy 81217 81615 137 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold413 WUBlastX LINE_L1-Tx1 235981 236130 43 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Academ 185660 186814 288 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Academ 186879 187763 310 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Academ 189203 189841 23 - . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold41304 WUBlastX LTR_Ngaro 94080 94853 387 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_hAT-hATw 381591 382190 171 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_hAT-hATw 382854 383162 173 - . . . . . -1 -1 -1 . . . scaffold1401 WUBlastX LINE_RTE-X 5468 6031 47 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold378 WUBlastX LINE_RTE-X 322008 322388 211 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Gypsy 24829 25320 76 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold408 WUBlastX LINE_Penelope 716312 716944 239 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_Penelope 716926 718293 519 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX DNA_Academ 316556 316813 177 - . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold625 WUBlastX LINE_CR1-L2 600761 601024 64 - . . scaffold625 GLEAN mRNA 587493 614849 0.872449 - . ID=CGI_10023425; scaffold625 WUBlastX LINE_CR1-L2 600761 601024 64 - . . scaffold625 GLEAN mRNA 593175 626759 0.878872 + . ID=CGI_10023426; scaffold39470 WUBlastX LTR_Ngaro 21186 22754 783 - . . scaffold39470 GLEAN mRNA 18519 32880 0.998788 - . ID=CGI_10003379; scaffold1402 WUBlastX LTR_Ngaro 458501 459670 679 + . . . . . -1 -1 -1 . . . scaffold640 WUBlastX LTR_Gypsy 150049 150504 22 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 88024 88398 43 - . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Pao 60157 60474 176 + . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LTR_Gypsy 69061 69888 460 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1142535 1142858 274 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 543361 544395 36 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 544385 544981 428 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 545468 545800 150 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_RTE-X 91139 94105 570 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_CR1-L2 273817 274281 211 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LTR_Gypsy 353249 355486 771 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold149 WUBlastX LINE_L1-Tx1 424910 425080 22 + . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LTR_Ngaro 127006 127254 131 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LTR_Ngaro 127593 128036 227 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LTR_Ngaro 128044 128511 335 - . . . . . -1 -1 -1 . . . C23232 WUBlastX RC_Helitron 661 2154 853 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_L2 177142 178362 605 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L1-Tx1 266109 266771 118 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L1-Tx1 266725 267618 591 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_Penelope 117294 117938 291 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_CR1 253307 254053 25 + . . . . . -1 -1 -1 . . . C26320 WUBlastX LINE_L2 2710 2964 75 + . . C26320 GLEAN mRNA 2740 3018 0.481188 + . ID=CGI_10000297; scaffold40010 WUBlastX LINE_L2 27604 27750 38 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_L2 196155 196376 64 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L2 140675 140941 55 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L2 142659 142925 55 - . . . . . -1 -1 -1 . . . scaffold366 WUBlastX LINE_CR1-L2 152518 152769 73 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_CR1-L2 18232 18681 43 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_L2 678478 678615 31 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_CR1-L2 191758 191811 43 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_CR1-L2 122879 123010 69 + . . scaffold1698 GLEAN mRNA 115530 127809 0.999999 + . ID=CGI_10019370; scaffold43122 WUBlastX LINE_L2 165282 165452 48 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Pao 603170 603274 64 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1 133608 133706 37 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L1 978214 978351 42 + . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LINE_L1 51518 51676 60 - . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LINE_L1 51870 51923 34 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Copia 55300 55359 25 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_hAT 63914 64168 66 - . . scaffold1301 GLEAN mRNA 63902 64216 0.618186 - . ID=CGI_10027703; scaffold257 WUBlastX DNA_Academ 675029 675244 72 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_L2 340754 341206 42 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L2 472544 472849 62 + . . scaffold1017 GLEAN mRNA 472107 472610 0.618241 + . ID=CGI_10025009; scaffold1797 WUBlastX LINE_L2 32553 32714 58 - . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LINE_CR1 19073 19216 32 + . . . . . -1 -1 -1 . . . C35532 WUBlastX LTR_Ngaro 15036 15524 34 - . . C35532 GLEAN mRNA 11931 21500 0.999947 - . ID=CGI_10001547; scaffold808 WUBlastX LINE_L2 133989 134372 82 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L2 612710 613189 51 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold42584 WUBlastX LINE_L2 100558 100734 84 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold661 WUBlastX LINE_Dong-R4 31736 31861 20 + . . . . . -1 -1 -1 . . . C32516 WUBlastX LTR_Ngaro 6088 6201 57 - . . . . . -1 -1 -1 . . . C13272 WUBlastX LTR_Gypsy 7 201 77 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 352588 353019 39 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Gypsy 6836 7012 47 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_Gypsy 821745 822047 79 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LTR_Gypsy 178334 178516 24 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LTR_Gypsy 485463 485699 91 + . . . . . -1 -1 -1 . . . C4757 WUBlastX LTR_Gypsy 2 112 101 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LTR_Gypsy 455368 455853 28 - . . scaffold1021 GLEAN mRNA 448242 473584 0.324995 - . ID=CGI_10022500; scaffold809 WUBlastX LTR_Gypsy 121558 121674 66 + . . scaffold809 GLEAN mRNA 120032 128741 0.553857 + . ID=CGI_10006493; scaffold917 WUBlastX LTR_Gypsy 213970 214272 72 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Gypsy 23875 23934 22 + . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Gypsy 347348 347407 22 + . . . . . -1 -1 -1 . . . scaffold35406 WUBlastX LTR_Gypsy 9833 10459 58 - . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold38784 WUBlastX LTR_Gypsy 2079 2432 77 + . . . . . -1 -1 -1 . . . scaffold39384 WUBlastX LTR_Gypsy 7017 7178 22 + . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LINE_R2-Hero 84810 85103 61 + . . . . . -1 -1 -1 . . . scaffold577 WUBlastX DNA_hAT-Blackja 148512 148793 68 + . . scaffold577 GLEAN mRNA 118575 184181 0.72743 - . ID=CGI_10009918; scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354204 47 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold296 WUBlastX DNA_IS4EU 39382 40146 60 + . . . . . -1 -1 -1 . . . scaffold41162 WUBlastX DNA_IS4EU 70872 71267 76 + . . scaffold41162 GLEAN mRNA 69250 72340 0.651134 + . ID=CGI_10004776; scaffold1599 WUBlastX DNA_IS4EU 773748 774002 92 - . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LTR_Gypsy 313620 313973 21 + . . scaffold43932 GLEAN mRNA 302308 316124 0.99992 + . ID=CGI_10014126; scaffold42326 WUBlastX LINE_I 36701 37357 38 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 274978 275298 47 + . . . . . -1 -1 -1 . . . C31724 WUBlastX LTR_Gypsy 8187 8555 38 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX DNA_Harbinger 8541 8759 69 - . . scaffold695 GLEAN mRNA 4125 9096 0.716645 + . ID=CGI_10023266; scaffold269 WUBlastX DNA_Harbinger 484083 484229 50 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 341721 342140 68 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_Penelope 719621 719722 55 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX DNA_MuDR 121094 121453 58 - . . scaffold1209 GLEAN mRNA 106847 123923 0.38603 - . ID=CGI_10007967; scaffold1194 WUBlastX LINE_R1 3386 3466 23 - . . scaffold1194 GLEAN mRNA 3134 3478 0.999661 - . ID=CGI_10001327; scaffold39880 WUBlastX LTR_ERV1 41433 41861 36 + . . . . . -1 -1 -1 . . . scaffold42124 WUBlastX DNA_MuDR 42762 42965 74 - . . scaffold42124 GLEAN mRNA 33717 47543 0.69411 + . ID=CGI_10006230; scaffold35910 WUBlastX LINE_Penelope 12675 12986 47 + . . . . . -1 -1 -1 . . . C27310 WUBlastX LINE_Penelope 3553 3966 34 + . . . . . -1 -1 -1 . . . scaffold227 WUBlastX LINE_Penelope 310137 310295 72 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_P 115554 115880 41 + . . . . . -1 -1 -1 . . . scaffold39142 WUBlastX LINE_L1 917 1198 78 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Ngaro 455241 455393 80 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_TcMar-Fot1 41751 42125 97 - . . . . . -1 -1 -1 . . . scaffold38596 WUBlastX DNA_TcMar-Marin 46859 46966 63 + . . . . . -1 -1 -1 . . . scaffold1140 WUBlastX DNA_TcMar-Fot1 11505 11675 49 + . . scaffold1140 GLEAN mRNA 11544 14792 0.943975 - . ID=CGI_10001241; scaffold1703 WUBlastX LINE_L1-Tx1 347730 348032 31 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_L1-Tx1 713481 713735 73 - . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L1-Tx1 138610 138852 49 - . . . . . -1 -1 -1 . . . scaffold34694 WUBlastX LINE_L1 15846 16013 40 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1 430365 430784 32 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_IS4EU 191086 191367 42 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX DNA_Kolobok-Hyd 688119 688724 52 - . . scaffold156 GLEAN mRNA 669682 693584 0.721042 - . ID=CGI_10026516; scaffold482 WUBlastX DNA_Kolobok-Hyd 42374 43417 36 + . . scaffold482 GLEAN mRNA 41454 43438 0.427398 + . ID=CGI_10010992; scaffold714 WUBlastX LINE_L1 299381 299764 69 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L1 555417 555950 48 - . . . . . -1 -1 -1 . . . C24582 WUBlastX LINE_L1-Tx1 1098 1277 33 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1 509649 510224 38 - . . scaffold121 GLEAN mRNA 504967 519244 0.995336 - . ID=CGI_10025657; scaffold1639 WUBlastX LINE_L1 86532 86969 41 - . . . . . -1 -1 -1 . . . scaffold35466 WUBlastX LINE_L1 9 281 47 - . . . . . -1 -1 -1 . . . C22998 WUBlastX LINE_L1 45 275 75 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1 540023 540217 43 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_CR1 345440 345625 61 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1 345440 345625 61 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold35896 WUBlastX LINE_RTE-BovB 20487 20642 29 - . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold1599 WUBlastX LINE_RTE-X 949175 949480 46 - . . . . . -1 -1 -1 . . . C33560 WUBlastX LINE_RTE-X 918 1061 33 - . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LINE_RTE-X 285975 286265 47 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_RTE-X 309595 309834 32 - . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_RTE-X 51684 51863 67 + . . scaffold1283 GLEAN mRNA 50365 61759 0.999936 - . ID=CGI_10011785; scaffold730 WUBlastX LINE_RTE-X 486669 487046 33 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_RTE-X 307502 307654 75 - . . scaffold44054 GLEAN mRNA 306696 317315 0.999734 + . ID=CGI_10016171; scaffold41568 WUBlastX LINE_RTE-X 77737 77961 25 - . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold1583 WUBlastX LINE_RTE-X 998996 999268 44 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_RTE-X 179906 180196 80 - . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LINE_RTE-X 199935 200384 47 + . . scaffold1084 GLEAN mRNA 199342 208474 0.831202 + . ID=CGI_10010080; scaffold388 WUBlastX LINE_RTE-X 553507 553662 20 + . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_RTE-BovB 72407 72625 43 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX DNA_PiggyBac 819684 819830 80 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_PiggyBac 811194 811532 91 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LINE_RTE-X 18062 18235 49 - . . . . . -1 -1 -1 . . . scaffold1812 WUBlastX LINE_RTE-X 37326 37481 38 - . . scaffold1812 GLEAN mRNA 18505 39381 0.997673 - . ID=CGI_10004688; scaffold1383 WUBlastX DNA_Harbinger 58611 58787 40 + . . . . . -1 -1 -1 . . . scaffold565 WUBlastX LINE_RTE-X 50509 50604 34 + . . . . . -1 -1 -1 . . . scaffold565 WUBlastX LINE_RTE-X 50679 50750 23 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_Sola 309771 310040 49 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX DNA_Sola 304488 304577 28 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Sola 169811 169873 43 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_TcMar-Marin 260622 260687 22 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Sola 337848 338345 42 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1-Tx1 430491 430772 52 + . . . . . -1 -1 -1 . . . scaffold1827 WUBlastX LINE_L1-Tx1 191072 191347 50 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1-Tx1 131477 131551 27 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_L1-Tx1 695312 695599 44 + . . scaffold469 GLEAN mRNA 673707 700737 0.794331 - . ID=CGI_10024692; scaffold43794 WUBlastX LINE_L1-Tx1 277044 277334 49 - . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX LINE_L1-Tx1 61497 61784 59 + . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold321 WUBlastX LTR_Gypsy-Troyk 90785 91063 57 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Copia 680184 680417 24 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_TcMar-Tc1 59431 59634 75 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_CR1 212377 212442 22 - . . . . . -1 -1 -1 . . . C29618 WUBlastX LINE_CR1-L2 6779 6829 21 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_CR1-L2 92948 93136 42 + . . . . . -1 -1 -1 . . . scaffold270 WUBlastX LINE_CR1 115589 115966 55 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_hAT 8800 9339 62 - . . scaffold266 GLEAN mRNA 8446 13085 0.992345 - . ID=CGI_10013345; scaffold481 WUBlastX LTR_Gypsy-Cigr 218954 219274 92 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Gypsy 103888 104058 75 - . . scaffold43116 GLEAN mRNA 94034 106356 0.999676 - . ID=CGI_10008812; scaffold1018 WUBlastX LTR_Caulimoviru 394246 394425 50 - . . . . . -1 -1 -1 . . . scaffold39526 WUBlastX LTR_Ngaro 59954 60274 34 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LTR_Pao 19381 19797 39 - . . scaffold1869 GLEAN mRNA 8009 37015 0.526029 - . ID=CGI_10009011; scaffold329 WUBlastX LTR_Pao 232121 232225 20 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Pao 232256 232390 61 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Pao 910785 911057 33 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_CR1-L2 13130 13552 51 + . . . . . -1 -1 -1 . . . scaffold38422 WUBlastX LINE_CR1 30422 30562 51 - . . scaffold38422 GLEAN mRNA 27073 31824 0.999996 - . ID=CGI_10002764; scaffold1528 WUBlastX LINE_CR1-L2 26927 27001 48 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1-L2 587576 587920 39 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LINE_CR1-L2 156778 156879 34 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold86 WUBlastX LINE_CR1 582473 582652 93 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_CR1 292347 292499 71 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_CR1 601562 601837 63 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_L2 119394 119483 21 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 39459 39575 29 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LTR_Gypsy 209902 210126 88 + . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold481 WUBlastX LTR_Gypsy 194757 194822 21 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 478078 478701 93 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 3020 3643 93 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX LTR_Gypsy 56052 56216 23 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX LTR_Gypsy 56282 56464 44 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_DIRS 227760 227891 25 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_DIRS 227890 228327 33 - . . . . . -1 -1 -1 . . . scaffold516 WUBlastX LTR_DIRS 10182 10424 69 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX DNA_Academ 261497 261556 27 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX DNA_Academ 59759 59926 35 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 712984 713118 47 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_L2 36862 37434 85 - . . . . . -1 -1 -1 . . . scaffold41064 WUBlastX DNA_Crypton 99683 99898 43 + . . . . . -1 -1 -1 . . . scaffold41064 WUBlastX DNA_Crypton 100464 100718 60 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_Crypton 184009 184233 31 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_Crypton 184768 184827 28 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Crypton 5987 6268 100 - . . scaffold1066 GLEAN mRNA 5431 6622 0.928703 - . ID=CGI_10012657; scaffold40440 WUBlastX LTR_Ngaro 54722 55012 34 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold100 WUBlastX LTR_Ngaro 864931 865116 47 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy 175003 175224 55 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 36173 36241 30 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold37946 WUBlastX LTR_Gypsy 14131 14607 74 - . . scaffold37946 GLEAN mRNA 2025 20198 0.734311 + . ID=CGI_10002553; scaffold1382 WUBlastX DNA_Harbinger 151445 151600 62 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX DNA_Harbinger 321719 321994 68 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Gypsy 919141 919260 20 + . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_hAT-Ac 17553 17801 37 - . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_hAT-Ac 18323 18430 28 - . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX DNA_IS4EU 16232 16426 79 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX DNA_IS4EU 162168 162440 76 + . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold35806 WUBlastX DNA_IS4EU 22116 22403 34 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_Kolobok-IS4 33614 33862 91 + . . . . . -1 -1 -1 . . . scaffold42032 WUBlastX DNA_IS4EU 138444 138824 20 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX DNA_Kolobok-IS4 5194 5712 73 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_hAT-Blackja 242463 242822 77 + . . scaffold772 GLEAN mRNA 238963 261048 0.714694 - . ID=CGI_10016587; scaffold43662 WUBlastX DNA_hAT-Tip100? 50026 50445 51 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_L1 155365 155448 36 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1 349175 349255 26 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L1-Tx1 149752 150294 44 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LINE_L1 20840 21403 65 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold1857 WUBlastX LINE_L1 60606 61166 86 + . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1 168766 168861 25 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Ngaro 643934 644050 57 + . . scaffold102 GLEAN mRNA 643973 666734 0.499984 + . ID=CGI_10028445; scaffold1041 WUBlastX LINE_L2 311421 311606 32 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Jockey 1114770 1115066 74 - . . . . . -1 -1 -1 . . . scaffold39274 WUBlastX LINE_Penelope 22633 22962 78 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LINE_Penelope 292987 293142 27 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX DNA_MuDR 277445 277768 32 - . . . . . -1 -1 -1 . . . scaffold37732 WUBlastX DNA_MuDR 46413 46616 104 - . . scaffold37732 GLEAN mRNA 41329 46430 0.987958 + . ID=CGI_10002485; scaffold41546 WUBlastX DNA_PiggyBac 92427 92570 62 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_TcMar-Pogo 1051818 1052261 55 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_PiggyBac 115088 115411 62 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_PiggyBac 390888 391178 45 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_RTE-X 165089 165493 39 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 215 358 43 - . . . . . -1 -1 -1 . . . scaffold43210 WUBlastX LINE_RTE-BovB 25375 25449 21 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_RTE-X 720132 720542 54 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_RTE-X 539983 540306 100 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-X 105079 105255 54 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 5048 5422 35 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 365589 365714 36 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 16291 16512 50 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 16685 16831 38 - . . . . . -1 -1 -1 . . . scaffold1371 WUBlastX LINE_RTE-X 57627 57665 25 - . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_RTE-X 150865 151107 56 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_RTE-X 201128 201187 32 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_RTE-X 201665 201940 53 + . . . . . -1 -1 -1 . . . scaffold459 WUBlastX DNA_TcMar-Marin 137523 137852 60 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold977 WUBlastX DNA_TcMar-Tc2 302455 302715 30 + . . . . . -1 -1 -1 . . . scaffold42760 WUBlastX LTR_Copia 185517 185615 31 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L1 270008 270226 65 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 85108 85341 100 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_L1-Tx1 243562 243645 52 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L1-Tx1 205221 205325 22 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LINE_L1-Tx1 51897 51977 38 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_CR1-L2 52691 52831 85 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1-L2 273988 274224 26 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1-L2 274457 274582 48 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Pao 203411 203809 109 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Pao 302245 302430 40 - . . scaffold351 GLEAN mRNA 298327 302475 0.747441 - . ID=CGI_10022603; scaffold87 WUBlastX LINE_CR1 48962 49033 20 + . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_CR1 146256 146303 22 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 227113 227457 63 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 591359 591562 21 + . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX LINE_L2 266661 267056 60 + . . . . . -1 -1 -1 . . . scaffold1341 WUBlastX LINE_L2 22343 22594 57 - . . scaffold1341 GLEAN mRNA 4451 30218 0.992186 + . ID=CGI_10004662; scaffold1857 WUBlastX LTR_Ngaro 47907 48227 22 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Ngaro 113841 113945 46 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 285035 285268 98 - . . . . . -1 -1 -1 . . . C29936 WUBlastX DNA_En-Spm 2106 2861 42 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LTR_Gypsy 361015 361317 90 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 476759 477241 89 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LTR_Gypsy 254056 254352 105 - . . . . . -1 -1 -1 . . . C28108 WUBlastX LTR_Gypsy 2 283 111 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 224433 225053 88 - . . scaffold591 GLEAN mRNA 224175 224468 0.561606 - . ID=CGI_10027559; scaffold1741 WUBlastX LTR_Gypsy 144113 144352 107 + . . scaffold1741 GLEAN mRNA 144116 145129 0.999285 + . ID=CGI_10024025; scaffold1705 WUBlastX LTR_Gypsy 97738 98613 89 + . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold43344 WUBlastX LTR_Gypsy 232181 232261 50 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Gypsy 383219 383899 69 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 246171 246359 26 - . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX DNA_hAT-Tip100 137435 137779 101 + . . scaffold1373 GLEAN mRNA 136954 137821 0.465822 + . ID=CGI_10007910; scaffold1214 WUBlastX DNA_hAT-hATw 201842 202510 55 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX RC_Helitron 234892 235176 106 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_IS4EU 62145 62303 28 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_IS4EU 62523 63335 36 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX DNA_hAT-Ac 132106 132237 37 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LTR_Gypsy 33694 34014 103 + . . . . . -1 -1 -1 . . . scaffold1511 WUBlastX DNA_Harbinger 8212 8433 86 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_Harbinger 35523 35633 48 + . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Gypsy 64445 64606 24 - . . scaffold424 GLEAN mRNA 46350 64570 0.999605 - . ID=CGI_10014352; scaffold514 WUBlastX LTR_Gypsy 471676 471915 53 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold925 WUBlastX LTR_Gypsy 503188 503310 24 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LTR_Gypsy 169312 169491 46 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L1-Tx1 1236053 1236430 61 + . . . . . -1 -1 -1 . . . C24566 WUBlastX LINE_L2 676 798 24 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_Merlin 101138 101227 28 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LINE_Penelope 124516 125019 45 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 1435370 1435627 39 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_Penelope 72832 73299 69 - . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX LINE_Penelope 14593 14742 22 - . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX LINE_Penelope 15278 15505 50 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_P 407737 408177 25 - . . scaffold433 GLEAN mRNA 407360 429733 0.877924 + . ID=CGI_10027068; scaffold833 WUBlastX LINE_Penelope 379607 379819 69 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold1892 WUBlastX LINE_L1 112846 113394 44 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_Ngaro 286674 286841 76 - . . . . . -1 -1 -1 . . . scaffold5 WUBlastX DNA_TcMar-Marin 95876 96016 45 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX DNA_TcMar-Marin 96103 96210 42 + . . . . . -1 -1 -1 . . . C20058 WUBlastX LINE_L1-Tx1 51 464 60 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Kolobok-Hyd 1215030 1215419 30 + . . scaffold150 GLEAN mRNA 1213916 1217122 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1215030 1215419 30 + . . scaffold150 GLEAN mRNA 1205286 1224549 1 - . ID=CGI_10028661; scaffold37876 WUBlastX LINE_L1-Tx1 47435 47785 32 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L1-Tx1 1013088 1013204 52 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L1-Tx1 1013616 1013705 42 - . . . . . -1 -1 -1 . . . scaffold1538 WUBlastX LINE_L1 21400 21993 28 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1 326589 327209 78 - . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LINE_L1 136518 137270 78 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1 350233 350379 55 + . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_L1-Tx1 190725 190865 27 + . . . . . -1 -1 -1 . . . C22998 WUBlastX LINE_L1 84 275 95 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_Penelope 331548 332147 40 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 230932 231111 103 + . . scaffold150 GLEAN mRNA 224010 241607 0.593383 + . ID=CGI_10028591; scaffold150 WUBlastX LINE_RTE-X 230932 231111 103 + . . scaffold150 GLEAN mRNA 225439 237186 0.997933 - . ID=CGI_10028592; scaffold542 WUBlastX LINE_RTE-X 217337 217591 27 - . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_RTE-X 553692 553967 60 + . . . . . -1 -1 -1 . . . scaffold34894 WUBlastX LINE_RTE-BovB 10065 10232 86 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-BovB 507792 507932 58 - . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_RTE-X 74217 74366 29 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 87633 87734 23 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 1711366 1711845 79 - . . . . . -1 -1 -1 . . . scaffold32096 WUBlastX LINE_RTE-BovB 9085 9150 22 + . . . . . -1 -1 -1 . . . scaffold32096 WUBlastX LINE_RTE-BovB 9463 9663 87 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_RTE-BovB 171378 171509 78 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Gypsy 173183 173476 117 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 46595 46837 44 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LTR_Gypsy 120694 121203 70 + . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_RTE-X 35154 35240 39 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Tc1 877548 877907 63 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX DNA_TcMar-Pogo 165935 165976 23 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX DNA_Sola 19549 19938 82 - . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX DNA_Sola 17611 17970 83 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Ngaro 43261 43419 33 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LINE_L1-Tx1 196469 196741 44 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold126 WUBlastX LINE_L1-Tx1 570776 570931 106 - . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_L1-Tx1 474601 474990 43 + . . . . . -1 -1 -1 . . . scaffold1822 WUBlastX LINE_L1-Tx1 62261 62560 39 - . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX LINE_L1-Tx1 139743 139913 79 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 221916 222230 22 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy-Cigr 437519 437689 49 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_TcMar-Tc1 470631 470783 56 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_TcMar-Tc1 31966 32328 76 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 1279126 1279314 50 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold453 WUBlastX LTR_Pao 203225 203746 103 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Gypsy 224264 224383 21 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_TcMar-IS885 873586 873705 22 - . . scaffold79 GLEAN mRNA 869143 880340 0.999287 - . ID=CGI_10024652; scaffold41358 WUBlastX LINE_L1 30535 30600 23 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1 931935 932081 26 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Gypsy 22575 22943 111 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Pao 94618 95022 103 + . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LINE_CR1-L2 146489 146662 86 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_CR1 357302 357979 84 + . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_CR1-L2 21416 21802 44 - . . scaffold36450 GLEAN mRNA 18407 33594 0.503687 - . ID=CGI_10001980; scaffold1439 WUBlastX LINE_L2 26526 26774 95 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LINE_CR1 113960 114583 41 - . . scaffold1650 GLEAN mRNA 102282 130606 0.781405 - . ID=CGI_10017772; scaffold960 WUBlastX LINE_CR1 329831 330097 90 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 459033 459266 92 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_CR1 50590 50838 85 - . . scaffold1671 GLEAN mRNA 47958 55887 0.998077 + . ID=CGI_10015136; scaffold950 WUBlastX LINE_CR1 49178 49303 20 + . . scaffold950 GLEAN mRNA 45484 50998 0.326384 + . ID=CGI_10022918; scaffold1850 WUBlastX LTR_Gypsy 234994 235134 63 + . . . . . -1 -1 -1 . . . scaffold38354 WUBlastX LTR_Gypsy 3899 4141 108 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 27440 27979 66 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Gypsy 382863 383033 25 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_RTE-BovB 335617 335787 79 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LTR_DIRS? 144055 144291 64 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_En-Spm 190170 190733 20 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX DNA_En-Spm 76807 77070 67 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_L2 211465 211590 62 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX DNA_Crypton 353408 353884 79 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_Crypton 418029 418178 23 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 87765 87905 81 - . . . . . -1 -1 -1 . . . scaffold34192 WUBlastX DNA_Kolobok 3703 3801 28 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy 220025 220723 41 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 88544 88777 59 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 62079 62138 21 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold42960 WUBlastX LTR_Gypsy 202857 203273 103 + . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Gypsy 346601 346756 20 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_Harbinger 373307 373495 53 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Harbinger 1434960 1435157 88 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_Harbinger 148430 148561 45 + . . . . . -1 -1 -1 . . . scaffold713 WUBlastX DNA_TcMar-Marin 351986 352117 23 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_IS4EU 183444 183944 24 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_IS4EU 184422 184628 60 - . . . . . -1 -1 -1 . . . scaffold42060 WUBlastX LINE_Jockey 73792 73920 55 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_IS4EU 48107 48241 62 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Kolobok-IS4 233764 234069 65 - . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX DNA_IS4EU 123029 123154 32 - . . scaffold1143 GLEAN mRNA 121955 124624 0.796524 - . ID=CGI_10009141; scaffold42674 WUBlastX DNA_hAT-Tip100 148753 148965 105 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LINE_L1 26739 26897 31 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1 1210616 1210822 29 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_Kolobok 217203 217361 75 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold1650 WUBlastX DNA_TcMar-Tc1 318563 318802 101 + . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 28611 29009 87 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LINE_L2 162383 162568 46 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold1036 WUBlastX LTR_Ngaro 56291 56518 31 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_CR1 105628 105741 20 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_Penelope 397615 397668 21 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 453915 453968 22 - . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX DNA_P 58274 58828 32 - . . scaffold1603 GLEAN mRNA 44108 68236 0.999997 - . ID=CGI_10012816; scaffold718 WUBlastX LINE_Penelope 171231 171380 75 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX DNA_NOF? 251159 251458 71 - . . scaffold1740 GLEAN mRNA 247855 255968 0.985926 + . ID=CGI_10011450; scaffold1875 WUBlastX DNA_NOF 11260 11520 69 + . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_RTE-X 47821 48003 95 + . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_RTE-RTE 134177 134335 40 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 612794 613168 80 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold337 WUBlastX LINE_RTE-X 1505078 1505503 78 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 1278860 1279117 104 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold57 WUBlastX LINE_RTE-X 36501 36728 109 - . . . . . -1 -1 -1 . . . C29438 WUBlastX LINE_RTE-X 2525 2809 73 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold1160 WUBlastX LINE_RTE-X 134022 134321 88 - . . . . . -1 -1 -1 . . . scaffold39652 WUBlastX LINE_RTE-X 62291 62569 93 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_RTE-X 3338 3610 93 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_RTE-X 72809 73513 35 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold43676 WUBlastX LINE_RTE-X 214766 215275 73 + . . scaffold43676 GLEAN mRNA 211597 216385 0.756935 + . ID=CGI_10011734; scaffold449 WUBlastX LINE_RTE-X 107168 107542 92 + . . . . . -1 -1 -1 . . . scaffold43522 WUBlastX LINE_RTE-X 92650 92922 62 + . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold471 WUBlastX LINE_RTE-X 120006 120335 50 + . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-X 452463 452639 86 + . . scaffold713 GLEAN mRNA 450558 455939 1 - . ID=CGI_10017762; scaffold39986 WUBlastX LINE_RTE-X 67688 68095 66 - . . . . . -1 -1 -1 . . . C27304 WUBlastX DNA_Sola 3469 3741 39 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX DNA_Sola 24488 25030 42 + . . scaffold1314 GLEAN mRNA 24248 26243 0.657792 + . ID=CGI_10009303; scaffold35466 WUBlastX DNA_TcMar-Tc1 17843 17986 49 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Tc1 744209 744391 30 - . . . . . -1 -1 -1 . . . scaffold1056 WUBlastX LINE_L1-Tx1 249696 249854 27 + . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1-Tx1 45523 45705 21 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L2 470838 471002 58 + . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LINE_L2 349432 349638 51 - . . scaffold1849 GLEAN mRNA 345198 370191 0.662499 + . ID=CGI_10015920; scaffold189 WUBlastX LINE_L2 540312 540470 30 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L2 540535 540834 59 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L2 541104 541151 26 + . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_L2 399689 399937 37 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_CR1 601491 601595 53 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_L2 324257 324658 51 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_L2-Hydra 403379 403420 21 + . . . . . -1 -1 -1 . . . scaffold738 WUBlastX DNA_hAT-Tip100 1902 2183 98 + . . scaffold738 GLEAN mRNA 1336 4448 1 + . ID=CGI_10000540; scaffold1703 WUBlastX LTR_Pao 178855 179277 22 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Pao 13766 14176 76 - . . scaffold1403 GLEAN mRNA 7932 14512 0.459466 - . ID=CGI_10020155; scaffold602 WUBlastX LTR_Gypsy 794008 794142 72 + . . scaffold602 GLEAN mRNA 781902 798568 0.814164 + . ID=CGI_10023204; scaffold172 WUBlastX LTR_Gypsy 15846 16010 69 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold321 WUBlastX DNA_Crypton 58090 58380 51 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Crypton 59046 59372 72 + . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 15654 15917 111 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_Jockey 559633 560151 98 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_DIRS 885225 885635 51 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 517794 518063 85 + . . . . . -1 -1 -1 . . . scaffold37668 WUBlastX LTR_Ngaro 30069 30563 82 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 548718 549263 107 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX DNA_En-Spm 130100 130888 30 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 48679 48813 21 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LTR_Gypsy 760829 761002 48 - . . scaffold625 GLEAN mRNA 750522 771270 0.999954 - . ID=CGI_10023437; scaffold678 WUBlastX LTR_Gypsy 815428 815622 25 + . . scaffold678 GLEAN mRNA 797592 830433 0.957761 + . ID=CGI_10026382; scaffold101 WUBlastX LTR_Gypsy 590943 591314 29 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy-Cigr 80635 81306 65 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Gypsy-Cigr 840131 840274 88 - . . . . . -1 -1 -1 . . . scaffold1892 WUBlastX DNA_hAT-hAT5 131498 132310 104 - . . scaffold1892 GLEAN mRNA 130400 134377 0.99506 - . ID=CGI_10011314; scaffold191 WUBlastX RC_Helitron 18665 19213 43 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_IS4EU 296161 296916 63 + . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX DNA_IS4EU 249359 249526 35 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249359 249526 35 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold1532 WUBlastX DNA_IS4EU 487064 487324 113 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Harbinger 1338047 1338319 86 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_Harbinger 627031 627084 24 + . . . . . -1 -1 -1 . . . scaffold1080 WUBlastX DNA_TcMar-Tc2 148011 148415 26 + . . . . . -1 -1 -1 . . . scaffold1080 WUBlastX DNA_TcMar-Tc2 149064 149240 82 + . . scaffold1080 GLEAN mRNA 148571 152000 0.995421 + . ID=CGI_10012673; scaffold1423 WUBlastX DNA_TcMar-Marin 231754 232014 56 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Ngaro 615616 615948 94 - . . . . . -1 -1 -1 . . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6865 7044 32 + . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_Kolobok-Hyd 210238 210393 21 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold41740 WUBlastX LINE_L1 114758 115123 23 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1 38490 38582 20 - . . scaffold1174 GLEAN mRNA 34818 43941 1 - . ID=CGI_10026023; scaffold1369 WUBlastX LINE_L1 2370 2705 40 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 295621 295734 21 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 395086 395361 74 + . . scaffold290 GLEAN mRNA 393390 421679 0.99629 + . ID=CGI_10018549; scaffold36462 WUBlastX LINE_RTE-X 20265 20480 49 - . . scaffold36462 GLEAN mRNA 15214 26775 0.999351 - . ID=CGI_10001929; scaffold321 WUBlastX LINE_RTE-X 605299 605409 36 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-X 117820 118014 50 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 33057 33404 46 + . . . . . -1 -1 -1 . . . scaffold955 WUBlastX LINE_RTE-BovB 119290 119475 48 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold1527 WUBlastX LINE_RTE-BovB 179049 179393 92 - . . . . . -1 -1 -1 . . . scaffold32346 WUBlastX DNA_PiggyBac 5718 6008 71 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX DNA_Maverick 230516 230611 31 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LINE_RTE-X 135414 135632 81 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 209614 209784 38 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LINE_L1-Tx1 658095 658529 51 + . . . . . -1 -1 -1 . . . scaffold952 WUBlastX LINE_L1-Tx1 25021 25602 42 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; C15300 WUBlastX LTR_Copia 10 201 121 - . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_TcMar-Tc1 348464 348898 52 + . . . . . -1 -1 -1 . . . scaffold1195 WUBlastX DNA_Zator 59050 59223 54 + . . scaffold1195 GLEAN mRNA 50183 65282 0.996429 + . ID=CGI_10012094; scaffold1195 WUBlastX DNA_Zator 59486 59539 29 + . . scaffold1195 GLEAN mRNA 50183 65282 0.996429 + . ID=CGI_10012094; scaffold1480 WUBlastX LINE_Jockey 81231 81644 68 - . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_hAT 319866 320123 63 + . . scaffold416 GLEAN mRNA 319803 321497 0.999997 + . ID=CGI_10014748; scaffold416 WUBlastX DNA_hAT 320337 320816 47 + . . scaffold416 GLEAN mRNA 319803 321497 0.999997 + . ID=CGI_10014748; scaffold992 WUBlastX LINE_L1 170771 171199 81 - . . . . . -1 -1 -1 . . . scaffold1260 WUBlastX DNA_Academ 101737 102108 77 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101737 102108 77 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold6 WUBlastX LTR_Pao 78538 78972 32 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_L2-Hydra 196340 197233 80 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_Rex-Babar 223802 223885 27 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold160 WUBlastX LINE_CR1 601613 601837 74 - . . . . . -1 -1 -1 . . . scaffold33042 WUBlastX LINE_CR1 521 838 75 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1 1269409 1269588 76 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold41786 WUBlastX LINE_CR1 57908 58030 20 + . . . . . -1 -1 -1 . . . scaffold1411 WUBlastX LTR_Gypsy 119835 120512 74 + . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LTR_Gypsy 21058 21453 68 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy-Gmr1 42704 42919 56 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy 41714 42286 110 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LTR_DIRS 232612 232866 88 - . . scaffold1382 GLEAN mRNA 229926 239669 0.88642 - . ID=CGI_10011181; scaffold1697 WUBlastX LTR_Ngaro 139317 139760 64 - . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Ngaro 61752 62444 54 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 227561 227743 126 - . . . . . -1 -1 -1 . . . C26460 WUBlastX LTR_Ngaro 1808 2302 37 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX DNA_TcMar-Marin 444996 445154 31 + . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L2 59195 59296 66 + . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LTR_DIRS 59394 59810 98 + . . . . . -1 -1 -1 . . . C24828 WUBlastX LTR_Gypsy 2632 2922 123 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 800321 800650 68 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold257 WUBlastX RC_Helitron 1434288 1434725 106 + . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_Jockey 17686 17850 47 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1 250800 250925 22 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1 570274 570444 61 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_L1 13843 14166 125 + . . . . . -1 -1 -1 . . . C28734 WUBlastX LINE_L1-Tx1 4008 4649 66 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1 191758 191988 21 + . . scaffold149 GLEAN mRNA 179199 193397 0.990232 - . ID=CGI_10025295; scaffold71 WUBlastX LINE_L1 192003 192290 79 - . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX LINE_L1-Tx1 44944 45219 75 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1-Tx1 585300 585599 54 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-ISRm1 340007 340702 117 + . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LTR_Ngaro 133790 133924 27 - . . . . . -1 -1 -1 . . . scaffold250 WUBlastX LTR_Ngaro 29595 29996 76 + . . . . . -1 -1 -1 . . . scaffold32230 WUBlastX DNA_MuDR 1848 2153 133 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_MuDR 874895 875068 20 - . . scaffold619 GLEAN mRNA 870805 880758 0.920529 - . ID=CGI_10025790; scaffold501 WUBlastX DNA_MuDR 461102 461323 119 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_Penelope 118988 119242 92 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-BovB 187695 187859 133 + . . scaffold115 GLEAN mRNA 184007 188317 0.994579 + . ID=CGI_10021383; scaffold422 WUBlastX LINE_RTE-X 186206 186307 39 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold36624 WUBlastX LINE_RTE-X 35369 35518 22 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_RTE-X 416281 416607 36 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-X 244869 245300 85 + . . . . . -1 -1 -1 . . . scaffold866 WUBlastX LINE_RTE-X 94615 95031 108 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold116 WUBlastX LINE_RTE-X 212496 212747 109 + . . scaffold116 GLEAN mRNA 199454 222023 0.8905 - . ID=CGI_10009421; scaffold35104 WUBlastX LTR_Pao 16094 16483 152 + . . . . . -1 -1 -1 . . . scaffold1056 WUBlastX LTR_DIRS 147475 147756 107 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LTR_DIRS 318413 318616 75 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold481 WUBlastX DNA_Sola 1253679 1254002 62 - . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_TcMar-Tc1 348307 348369 37 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX DNA_TcMar-Tc1 318491 318802 89 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_L1-Tx1 193029 193103 26 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LINE_L1-Tx1 1835 2113 92 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L2 143074 143319 133 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_CR1 781678 781989 21 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_L2 357291 357569 128 - . . scaffold1715 GLEAN mRNA 354777 364040 0.588766 - . ID=CGI_10019673; scaffold102 WUBlastX LTR_Gypsy 736083 736340 75 + . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_L1 224148 224243 25 + . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_DIRS 12490 12774 93 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LTR_Ngaro 290679 291185 69 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_TcMar-Tc1 492502 493002 107 + . . . . . -1 -1 -1 . . . scaffold1893 WUBlastX LTR_DIRS? 162167 162409 132 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 500224 500361 24 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 80695 81564 76 + . . . . . -1 -1 -1 . . . scaffold29142 WUBlastX LTR_Gypsy 899 1591 136 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Gypsy 270360 270824 123 + . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; C32606 WUBlastX LTR_Gypsy 5221 6210 81 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy 80563 81039 115 + . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LTR_Gypsy 178915 179013 49 - . . . . . -1 -1 -1 . . . C31370 WUBlastX LTR_Gypsy 6999 8135 118 - . . . . . -1 -1 -1 . . . scaffold35902 WUBlastX LTR_Gypsy-Cigr 28474 28809 124 + . . . . . -1 -1 -1 . . . scaffold1235 WUBlastX LTR_Gypsy 28457 29047 106 + . . scaffold1235 GLEAN mRNA 16837 34725 0.738057 - . ID=CGI_10011828; scaffold664 WUBlastX LTR_Gypsy 521430 521525 30 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_R2-Hero 572480 572692 97 + . . . . . -1 -1 -1 . . . scaffold1511 WUBlastX DNA_IS4EU 126307 126849 98 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_IS4EU 303603 303776 33 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_TcMar-ISRm1 273964 274281 86 - . . . . . -1 -1 -1 . . . C30806 WUBlastX DNA_TcMar-Tc1 5257 5736 105 + . . . . . -1 -1 -1 . . . scaffold38952 WUBlastX LINE_Penelope 37148 37450 41 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_Penelope 202551 202748 22 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 244351 244728 118 - . . scaffold86 GLEAN mRNA 234944 244974 0.760974 - . ID=CGI_10028144; scaffold880 WUBlastX LINE_Penelope 91701 92423 60 + . . scaffold880 GLEAN mRNA 88452 95761 0.999285 + . ID=CGI_10022181; scaffold1315 WUBlastX LINE_Penelope 689035 689535 21 - . . scaffold1315 GLEAN mRNA 688539 696190 0.999948 - . ID=CGI_10021627; scaffold168 WUBlastX DNA_MuDR 178687 178815 50 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold38056 WUBlastX LTR_Ngaro 49867 50331 59 + . . . . . -1 -1 -1 . . . scaffold527 WUBlastX LINE_L1 307682 307867 21 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Fot1 647423 647659 153 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold1329 WUBlastX DNA_TcMar-m44 87479 87778 140 + . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold128 WUBlastX DNA_Kolobok 344938 345111 100 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_RTE-X 339759 340061 74 - . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_RTE-X 328940 329182 54 + . . scaffold1053 GLEAN mRNA 299038 331134 0.830467 - . ID=CGI_10014298; scaffold188 WUBlastX LINE_RTE-X 225572 225718 84 + . . . . . -1 -1 -1 . . . scaffold308 WUBlastX LINE_RTE-X 111384 111647 106 - . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LINE_RTE-X 15099 15464 32 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 58007 58351 70 + . . scaffold290 GLEAN mRNA 51430 74485 0.815504 + . ID=CGI_10018531; scaffold980 WUBlastX LINE_RTE-X 165599 165874 33 + . . scaffold980 GLEAN mRNA 163810 172327 0.499535 - . ID=CGI_10019213; scaffold1283 WUBlastX LINE_RTE-RTE 146636 146713 28 + . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LINE_RTE-RTE 80256 80393 24 + . . scaffold1802 GLEAN mRNA 71908 80776 0.999761 + . ID=CGI_10007150; scaffold756 WUBlastX DNA_Maverick 196933 197094 34 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Maverick 66662 67015 43 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold312 WUBlastX DNA_Maverick 34887 35150 59 - . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_RTE-X 14945 15292 97 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_RTE-BovB 1080925 1081023 24 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_RTE-BovB 141953 142096 29 - . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_RTE-X 129490 129765 56 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 132265 132477 25 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_Sola 451318 452109 73 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-X 1210878 1211069 84 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-X 1211065 1211211 49 + . . . . . -1 -1 -1 . . . C33204 WUBlastX LINE_L1-Tx1 12549 12992 24 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 28047 28466 42 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold43182 WUBlastX DNA_TcMar-Tc1 99848 100144 65 + . . scaffold43182 GLEAN mRNA 97443 102816 0.800679 + . ID=CGI_10009200; scaffold40186 WUBlastX DNA_TcMar-Tc1 24810 25448 59 - . . scaffold40186 GLEAN mRNA 18331 26539 0.486093 - . ID=CGI_10003927; scaffold1137 WUBlastX LTR_Pao 337 1161 71 + . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX LTR_Pao 130050 130115 35 - . . . . . -1 -1 -1 . . . scaffold1260 WUBlastX DNA_Academ 101833 102240 134 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101833 102240 134 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold833 WUBlastX DNA_Academ 470509 470631 20 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_CR1-L2 66699 67232 93 + . . . . . -1 -1 -1 . . . scaffold34282 WUBlastX LINE_Rex-Babar 14267 14347 21 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold750 WUBlastX LINE_CR1-L2 506277 506606 100 - . . . . . -1 -1 -1 . . . scaffold37900 WUBlastX LINE_CR1 20436 20792 141 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold449 WUBlastX LINE_L2 278445 278963 31 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L2 266647 266934 63 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 490824 490886 21 + . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_L2 74885 75457 127 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LTR_Gypsy 126674 127156 41 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX DNA_En-Spm 161332 161817 134 + . . scaffold1647 GLEAN mRNA 157870 163808 0.957006 - . ID=CGI_10008141; scaffold347 WUBlastX LTR_Gypsy 715741 716106 131 - . . . . . -1 -1 -1 . . . scaffold373 WUBlastX LTR_Gypsy 691 873 59 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 167534 168688 145 - . . scaffold1009 GLEAN mRNA 163164 171986 0.959931 - . ID=CGI_10028721; scaffold1558 WUBlastX LINE_L2 13891 14466 79 - . . . . . -1 -1 -1 . . . scaffold37740 WUBlastX DNA_Crypton 44056 44646 74 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 37495 37980 134 - . . . . . -1 -1 -1 . . . C34562 WUBlastX LTR_Ngaro 5673 6116 93 + . . . . . -1 -1 -1 . . . scaffold38056 WUBlastX LTR_Ngaro 49739 49786 22 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_L2 222811 223035 34 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold441 WUBlastX DNA_IS4EU 50940 51119 28 - . . . . . -1 -1 -1 . . . C25642 WUBlastX DNA_Kolobok-IS4 986 1381 127 - . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_R2-Hero 77802 78383 64 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 493436 493651 57 - . . . . . -1 -1 -1 . . . scaffold1725 WUBlastX LTR_Gypsy 10083 10322 119 + . . . . . -1 -1 -1 . . . scaffold1256 WUBlastX DNA_Harbinger 81432 81629 134 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_Harbinger 266781 266966 84 - . . scaffold1 GLEAN mRNA 264014 267684 0.995923 + . ID=CGI_10013474; scaffold1 WUBlastX DNA_Harbinger 266956 267198 32 - . . scaffold1 GLEAN mRNA 264014 267684 0.995923 + . ID=CGI_10013474; scaffold1244 WUBlastX LINE_L1-Tx1 155759 156244 60 + . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_L1 13984 14286 132 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_L1-Tx1 465558 465938 89 + . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_L1 284 748 105 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_TcMar-Tc1 842 1177 132 - . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_ERV1 12626 12802 22 - . . . . . -1 -1 -1 . . . scaffold42264 WUBlastX LTR_Ngaro 130965 131522 64 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX DNA_TcMar-Tc1 13063 13710 132 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_Penelope 179804 180244 109 - . . . . . -1 -1 -1 . . . scaffold38136 WUBlastX DNA_Maverick 45859 46137 155 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1060860 1061132 131 - . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LINE_R2 192664 193242 55 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 837711 838160 89 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_RTE-X 4122 4568 48 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold138 WUBlastX LINE_RTE-X 86482 86679 41 - . . scaffold138 GLEAN mRNA 84559 99053 1 + . ID=CGI_10008428; scaffold311 WUBlastX LINE_RTE-X 7253 7414 38 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 31698 31901 54 + . . . . . -1 -1 -1 . . . scaffold1399 WUBlastX DNA_Sola 4675 4914 42 - . . . . . -1 -1 -1 . . . scaffold823 WUBlastX LTR_Ngaro 38671 38838 21 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 858673 858978 123 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX DNA_TcMar-Tc1 250453 250734 39 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX DNA_TcMar-Tc1 242392 242592 77 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_TcMar-Tc1 210084 210320 25 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; C26394 WUBlastX LINE_L1-Tx1 3570 3878 96 - . . . . . -1 -1 -1 . . . scaffold1452 WUBlastX DNA_hAT-Tip100 170550 171071 148 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L2 151324 151680 113 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold481 WUBlastX LINE_L2 1229090 1229233 41 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1229452 1229664 94 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold39352 WUBlastX LINE_L2 31506 32054 115 + . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_CR1 216723 217247 77 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold121 WUBlastX DNA_TcMar-Tc1 419327 419929 115 + . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LTR_Pao 113824 114513 117 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Pao 46375 46992 147 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold41014 WUBlastX DNA_Crypton 66386 66664 41 - . . scaffold41014 GLEAN mRNA 64146 100898 0.861197 - . ID=CGI_10004639; scaffold41014 WUBlastX DNA_Crypton 66742 66951 60 - . . scaffold41014 GLEAN mRNA 64146 100898 0.861197 - . ID=CGI_10004639; scaffold61 WUBlastX LTR_DIRS 389566 390264 76 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L2 563847 563891 20 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 215630 215926 39 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold43242 WUBlastX DNA_Harbinger 18756 18875 126 - . . . . . -1 -1 -1 . . . scaffold154 WUBlastX DNA_Harbinger 56481 56666 25 - . . scaffold154 GLEAN mRNA 55540 66408 1 - . ID=CGI_10004833; scaffold154 WUBlastX DNA_Harbinger 57655 57795 40 - . . scaffold154 GLEAN mRNA 55540 66408 1 - . ID=CGI_10004833; scaffold1780 WUBlastX LTR_Gypsy 133172 133957 120 - . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_Gypsy 50125 50475 20 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold1769 WUBlastX LTR_Gypsy 190481 191326 85 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Gypsy 10953 11291 28 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX DNA_hAT-Ac 403681 403794 29 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX DNA_hAT-Ac 403790 403933 85 + . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX RC_Helitron 126146 126613 162 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 397883 397981 56 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold40054 WUBlastX DNA_IS4EU 56855 57262 94 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LINE_L1-Tx1 99379 99738 31 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX DNA_TcMar-Tc2 302572 302706 63 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX DNA_TcMar-Tc2 302835 303065 105 + . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX DNA_Kolobok 135381 135518 73 + . . scaffold1172 GLEAN mRNA 130831 145007 0.99998 + . ID=CGI_10006909; scaffold40368 WUBlastX LTR_Ngaro 36014 36361 154 + . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX LTR_Ngaro 36379 36498 22 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Marin 475911 475970 25 - . . . . . -1 -1 -1 . . . C26402 WUBlastX LINE_L1-Tx1 3054 3242 29 + . . . . . -1 -1 -1 . . . scaffold38934 WUBlastX DNA_Kolobok 52201 53580 45 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 971367 971495 69 - . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold501 WUBlastX LINE_RTE-X 587247 587645 122 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_RTE-BovB 233914 234213 168 + . . . . . -1 -1 -1 . . . scaffold41448 WUBlastX LINE_RTE-X 26583 27035 97 + . . scaffold41448 GLEAN mRNA 25683 29439 0.999991 + . ID=CGI_10005061; scaffold1710 WUBlastX LINE_RTE-BovB 115321 115377 20 + . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 170269 170391 40 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold1149 WUBlastX LTR_Ngaro 102025 102441 63 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 723680 724255 105 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 441536 441676 64 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 1188840 1189091 43 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold896 WUBlastX LINE_L1-Tx1 47842 48237 85 + . . scaffold896 GLEAN mRNA 45378 49645 0.962391 - . ID=CGI_10022830; scaffold40822 WUBlastX LINE_L1-Tx1 43425 43697 75 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_L1-Tx1 44470 44592 36 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 561472 561603 20 - . . scaffold1750 GLEAN mRNA 560254 561945 0.999999 - . ID=CGI_10021498; scaffold43920 WUBlastX LTR_Pao 5132 5452 150 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_hAT 231704 231898 100 + . . scaffold1750 GLEAN mRNA 229777 232957 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 231704 231898 100 + . . scaffold1750 GLEAN mRNA 227209 235623 0.823116 - . ID=CGI_10021475; scaffold1735 WUBlastX LINE_L2 7288 7950 73 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L2 214872 215120 21 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_CR1-L2 359047 359409 82 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_L2 69901 70584 107 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold1862 WUBlastX LINE_L2 538500 538814 98 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 654740 654982 26 - . . scaffold106 GLEAN mRNA 650785 658770 0.999129 - . ID=CGI_10022052; scaffold1154 WUBlastX DNA_En-Spm 214470 215108 129 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_RTE-BovB 187921 188577 83 + . . . . . -1 -1 -1 . . . scaffold1290 WUBlastX LTR_Gypsy 56718 57803 133 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1041407 1041997 78 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 312426 312605 37 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold1697 WUBlastX LINE_L2 28387 28905 48 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Ngaro 5110 5346 55 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Ngaro 5348 5518 56 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_DIRS 456582 457040 141 + . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold1018 WUBlastX LTR_Ngaro 221320 221580 49 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 496916 497074 92 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_IS4EU 396268 396789 174 + . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold86 WUBlastX DNA_IS4EU 225524 226045 174 + . . . . . -1 -1 -1 . . . scaffold841 WUBlastX DNA_IS4EU 25521 25685 44 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 148595 148687 22 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_Gypsy 363928 364020 22 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_Gypsy 141622 142515 137 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold1521 WUBlastX DNA_Harbinger 50400 50900 117 - . . . . . -1 -1 -1 . . . scaffold148 WUBlastX DNA_Harbinger 38309 38947 144 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_Kolobok 346880 347167 50 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold525 WUBlastX LINE_L1 196992 197105 23 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 589980 590150 52 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Fot1 270995 271105 20 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX DNA_TcMar-Tc2 216773 216973 75 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L2 423632 424063 128 + . . . . . -1 -1 -1 . . . scaffold1184 WUBlastX LTR_Ngaro 8799 9029 70 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_RTE-BovB 375043 375168 40 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_RTE-BovB 375206 375502 21 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_RTE-BovB 375683 375808 38 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_RTE-BovB 376229 376375 48 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-BovB 905787 905984 32 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_Proto2 448266 448949 105 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 4904 5437 130 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX DNA_Maverick 41448 42047 42 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LINE_RTE-X 229889 230083 21 - . . . . . -1 -1 -1 . . . scaffold200 WUBlastX LINE_RTE-X 92825 93667 49 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_RTE-X 486413 486622 73 - . . . . . -1 -1 -1 . . . C30728 WUBlastX LTR_Gypsy 6821 7336 152 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_TcMar-Tc2 190562 191116 107 - . . . . . -1 -1 -1 . . . scaffold43520 WUBlastX DNA_Sola 264476 264847 122 + . . scaffold43520 GLEAN mRNA 260878 269535 0.911795 - . ID=CGI_10010725; scaffold43182 WUBlastX LTR_DIRS 59883 60551 135 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 142155 142298 20 - . . . . . -1 -1 -1 . . . scaffold29372 WUBlastX LTR_Ngaro 3395 3931 157 - . . . . . -1 -1 -1 . . . C15404 WUBlastX LTR_DIRS 1 246 178 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_PiggyBac 535813 536202 57 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 699076 699267 21 + . . . . . -1 -1 -1 . . . C15498 WUBlastX LTR_Gypsy-Troyk 126 305 149 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_L2 616593 617498 397 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold987 WUBlastX LTR_Gypsy 203228 203644 210 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Ngaro 270860 271153 200 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Ngaro 271126 271881 519 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-X 200906 201391 113 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_RTE-X 403598 404269 140 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX DNA_Academ 491074 492339 405 + . . scaffold507 GLEAN mRNA 492046 492426 0.51402 + . ID=CGI_10019104; scaffold968 WUBlastX LINE_RTE-X 114560 116770 765 + . . scaffold968 GLEAN mRNA 110087 120737 0.425641 + . ID=CGI_10006297; scaffold1714 WUBlastX LINE_L1-Tx1 133151 133750 85 - . . . . . -1 -1 -1 . . . scaffold315 WUBlastX DNA_Harbinger 426962 427657 567 + . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 427821 428171 262 + . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold351 WUBlastX DNA_Maverick 282687 283391 80 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_Penelope 94153 94953 311 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 334511 336553 850 + . . scaffold1132 GLEAN mRNA 323455 353252 0.805086 - . ID=CGI_10023315; scaffold461 WUBlastX DNA_Maverick 623192 623989 472 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L1-Tx1 1293743 1294720 510 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LINE_RTE-X 279400 280872 702 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LINE_RTE-X 280871 281050 119 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_Gypsy 584685 585260 184 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX RC_Helitron 653150 654052 342 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_L1-Tx1 129951 130652 201 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 252133 253446 575 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 254938 255099 56 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold1589 WUBlastX LINE_CR1 853281 853322 33 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_CR1 87162 87545 47 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L2 118595 118693 20 + . . . . . -1 -1 -1 . . . C14944 WUBlastX LINE_CR1-L2 18 275 160 - . . . . . -1 -1 -1 . . . scaffold1333 WUBlastX LINE_L2 171615 172109 132 - . . . . . -1 -1 -1 . . . C23400 WUBlastX LINE_L2 8 502 132 + . . . . . -1 -1 -1 . . . scaffold34420 WUBlastX LINE_L2 1526 2221 115 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_CR1 568307 568744 141 + . . scaffold1889 GLEAN mRNA 562057 574839 0.990088 + . ID=CGI_10019628; scaffold143 WUBlastX LINE_CR1-L2 215168 215515 117 + . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold1558 WUBlastX LINE_L1 41713 41853 37 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold100 WUBlastX LTR_Ngaro 543450 543590 114 - . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LTR_Ngaro 251428 252024 136 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Ngaro 43511 43792 168 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_DIRS 470301 470663 131 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 1429488 1430138 150 + . . . . . -1 -1 -1 . . . scaffold39334 WUBlastX LTR_Gypsy 22367 22936 139 - . . . . . -1 -1 -1 . . . scaffold39334 WUBlastX LTR_Gypsy 23744 23788 27 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LTR_Gypsy-Cigr 66567 66941 148 - . . scaffold40638 GLEAN mRNA 61308 67362 0.755375 - . ID=CGI_10004287; scaffold40894 WUBlastX DNA_En-Spm 34846 35241 168 - . . scaffold40894 GLEAN mRNA 20214 44382 0.41206 + . ID=CGI_10004536; scaffold1242 WUBlastX LINE_RTE-BovB 2156 2344 78 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX RC_Helitron 92974 93780 114 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_hAT-Tip100 423208 423471 36 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold40690 WUBlastX DNA_IS4EU 6818 7216 114 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX DNA_Harbinger 49249 49521 160 - . . scaffold1900 GLEAN mRNA 42587 57859 0.249831 + . ID=CGI_10017325; scaffold419 WUBlastX LTR_Gypsy 1370990 1371040 24 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 188460 189044 152 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188460 189044 152 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold1424 WUBlastX DNA_Kolobok 67456 67671 24 + . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_Ngaro 75690 75863 70 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold38978 WUBlastX DNA_TcMar-Tc1 11135 11698 128 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_TcMar-Tc1 673417 673980 128 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX DNA_TcMar-Tc1 136076 136327 90 + . . . . . -1 -1 -1 . . . scaffold35574 WUBlastX LINE_L1-Tx1 2770 3714 36 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_RTE-X 170478 170714 103 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_RTE-X 171247 171522 53 - . . . . . -1 -1 -1 . . . scaffold452 WUBlastX LINE_RTE-X 10768 10884 48 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LINE_RTE-X 298969 300054 47 + . . . . . -1 -1 -1 . . . scaffold616 WUBlastX DNA_PiggyBac 405223 405675 128 - . . . . . -1 -1 -1 . . . C32888 WUBlastX DNA_PiggyBac 8056 8565 135 - . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX DNA_Maverick 83277 83477 148 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Maverick 325584 326003 141 - . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_RTE-X 135219 135338 32 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 35059 35313 46 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_DIRS 156795 157364 67 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX DNA_Sola 20156 20674 130 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX DNA_TcMar-Tc1 481982 482365 96 - . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_L1-Tx1 144210 144557 132 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1-Tx1 184781 185389 36 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 23639 24487 122 + . . . . . -1 -1 -1 . . . scaffold40832 WUBlastX LINE_RTE-X 79819 81663 840 - . . scaffold40832 GLEAN mRNA 51373 82869 0.350561 + . ID=CGI_10004457; scaffold1445 WUBlastX LINE_CR1 170395 172023 520 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_L2 4752 6320 945 - . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LTR_Ngaro 169942 171501 981 - . . scaffold510 GLEAN mRNA 163291 175111 0.785549 + . ID=CGI_10013769; scaffold1896 WUBlastX LTR_Gypsy-Cigr 108788 108883 25 + . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_L1-Tx1 8054 8482 242 - . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_L1-Tx1 8852 10405 460 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_Penelope 186981 188615 938 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_CR1-L2 34347 35534 525 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_hAT-Tip100 55005 55964 504 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_hAT-Tip100 56020 56709 468 - . . . . . -1 -1 -1 . . . scaffold41014 WUBlastX LINE_L1-Tx1 30021 30815 247 - . . . . . -1 -1 -1 . . . scaffold41014 WUBlastX LINE_L1-Tx1 30769 31308 418 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 276459 276548 53 - . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_CR1-L2 183725 185533 810 - . . scaffold449 GLEAN mRNA 184691 200379 0.558382 - . ID=CGI_10010963; scaffold867 WUBlastX LTR_Pao 1020108 1020470 164 - . . . . . -1 -1 -1 . . . C28218 WUBlastX LTR_Pao 8 1858 949 - . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 55318 57186 1079 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 326975 327193 83 - . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_RTE-X 25182 27803 821 - . . scaffold616 GLEAN mRNA 2988 39761 0.690684 - . ID=CGI_10015383; scaffold1705 WUBlastX LTR_Gypsy 94478 95860 94 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; C34546 WUBlastX LTR_Pao 17339 17416 38 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Pao 12901 13017 44 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_CR1-L2 746125 746307 124 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_CR1-L2 344946 345086 56 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1-L2 344946 345086 56 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold524 WUBlastX LINE_L2 187282 188097 122 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_CR1 244388 245335 88 - . . scaffold43836 GLEAN mRNA 233435 246233 0.999128 + . ID=CGI_10013061; scaffold43836 WUBlastX LINE_CR1 244388 245335 88 - . . scaffold43836 GLEAN mRNA 242579 251086 0.650911 - . ID=CGI_10013062; scaffold1100 WUBlastX LTR_Gypsy 104843 104998 70 - . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LTR_Ngaro 42118 42789 114 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LTR_DIRS 28039 28884 112 + . . . . . -1 -1 -1 . . . scaffold43520 WUBlastX LTR_Ngaro 185338 186297 54 + . . scaffold43520 GLEAN mRNA 184106 230161 0.796254 - . ID=CGI_10010721; scaffold501 WUBlastX LTR_DIRS 630697 631041 85 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L2 615809 616189 181 + . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Harbinger 105745 106023 36 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold1427 WUBlastX LTR_Gypsy 85724 86299 80 + . . scaffold1427 GLEAN mRNA 83286 88793 0.375742 + . ID=CGI_10005230; scaffold1402 WUBlastX RC_Helitron 478940 479359 139 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_hAT-Blackja 44874 45128 52 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_IS4EU 1155517 1155648 54 + . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold510 WUBlastX DNA_Kolobok-IS4 273663 273974 111 + . . . . . -1 -1 -1 . . . scaffold878 WUBlastX LINE_L1 10098 10178 24 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_MuDR 1477837 1478226 127 + . . . . . -1 -1 -1 . . . scaffold29 WUBlastX LINE_RTE-X 12376 13347 63 - . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_RTE-X 149781 150182 158 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold402 WUBlastX LINE_RTE-X 141958 142632 50 + . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX LINE_RTE-X 140016 140708 37 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX DNA_Maverick 11616 12140 177 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_RTE-X 158806 159135 33 + . . . . . -1 -1 -1 . . . scaffold34442 WUBlastX LTR_Ngaro 11946 12314 130 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_L1-Tx1 11842 12009 82 - . . . . . -1 -1 -1 . . . scaffold739 WUBlastX DNA_TcMar-Tc1 91390 92169 125 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LTR_Gypsy-Cigr 121120 121377 187 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA 701342 701398 28 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA 701395 702450 75 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA 702815 703171 34 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 311832 311915 41 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Gypsy 304543 304872 163 + . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LINE_RTE-X 377417 377716 36 - . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LINE_RTE-X 377631 378647 485 - . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LINE_RTE-X 378883 379725 254 - . . . . . -1 -1 -1 . . . C33524 WUBlastX LINE_L2 12990 14549 972 - . . . . . -1 -1 -1 . . . scaffold722 WUBlastX LTR_Ngaro 301882 302295 288 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX RC_Helitron 12906 13046 27 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 473267 473779 111 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1-Tx1 475206 476429 612 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1-Tx1 476772 477089 147 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold43538 WUBlastX LTR_Gypsy-Cigr 34919 35122 89 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold41568 WUBlastX LINE_RTE-X 39126 40781 277 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 194547 194717 62 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LTR_Gypsy 27185 27775 343 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_L1-Tx1 128495 129313 215 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_DIRS 251494 252399 608 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold42790 WUBlastX LTR_Gypsy 157903 158205 176 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 237835 238674 278 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L1-Tx1 24826 25065 78 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LTR_Pao 230320 230943 119 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Pao 70109 70417 169 - . . . . . -1 -1 -1 . . . scaffold42366 WUBlastX DNA_hAT 75976 76083 25 + . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold595 WUBlastX LINE_L2 64297 64686 41 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_CR1-L2 581054 581323 63 + . . scaffold115 GLEAN mRNA 575453 585479 0.845977 + . ID=CGI_10021407; scaffold43552 WUBlastX LTR_Gypsy 226728 227303 143 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold42 WUBlastX LTR_Gypsy 9746 9805 21 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LTR_Ngaro 965804 966241 163 + . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold1745 WUBlastX LTR_Ngaro 118433 118621 145 + . . scaffold1745 GLEAN mRNA 107455 123228 0.998783 - . ID=CGI_10005406; scaffold383 WUBlastX LTR_Ngaro 464545 464919 94 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Ngaro 464919 465077 25 + . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LTR_DIRS 18542 19120 138 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Gypsy 134271 134819 171 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 588802 589575 145 + . . . . . -1 -1 -1 . . . scaffold42096 WUBlastX DNA_Harbinger 107437 107574 24 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX DNA_Harbinger 107437 107574 24 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold451 WUBlastX LTR_Gypsy 96482 97084 173 - . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LTR_Gypsy 9475 9714 105 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 372682 373263 166 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX RC_Helitron 184155 185522 50 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_R2-Hero 82673 83428 50 - . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_hAT-Tip100 173943 174215 155 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_Kolobok-IS4 10893 11096 72 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_Kolobok-IS4 11105 11314 25 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_Kolobok-IS4 11305 11487 78 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_IS4EU 1468733 1469785 103 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX DNA_TcMar-Marin 164429 164998 165 + . . . . . -1 -1 -1 . . . scaffold40270 WUBlastX LINE_L1 4899 5294 91 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L1 791480 791701 109 - . . scaffold1188 GLEAN mRNA 787973 796993 0.991964 + . ID=CGI_10025502; scaffold1832 WUBlastX LINE_I-Nimb 390786 391193 24 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Ngaro 1040331 1040663 98 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_L2 602268 602549 172 + . . . . . -1 -1 -1 . . . scaffold1203 WUBlastX LINE_RTE-X 148295 148495 63 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_RTE-X 77395 77502 69 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX DNA_Maverick 259242 260066 133 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_RTE-X 53242 53502 44 - . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LTR_DIRS 7513 8442 88 - . . scaffold560 GLEAN mRNA 2793 16922 0.999375 - . ID=CGI_10008749; scaffold560 WUBlastX LTR_DIRS 7513 8442 88 - . . scaffold560 GLEAN mRNA 7103 27549 1 + . ID=CGI_10008750; scaffold22 WUBlastX LINE_L1-Tx1 810388 810825 46 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_hAT-Tip100 1282931 1283443 356 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_hAT-Tip100 1283406 1284635 719 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX RC_Helitron 189910 190224 24 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Pao 263985 264527 489 + . . . . . -1 -1 -1 . . . scaffold525 WUBlastX LTR_Copia 188958 189413 345 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX LTR_Copia 189421 191058 937 - . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LTR_Gypsy 34656 36506 1251 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 275323 276267 360 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_DIRS 252393 253277 513 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold343 WUBlastX DNA_Zator 619366 621462 1225 + . . scaffold343 GLEAN mRNA 618238 636839 0.461317 - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Zator 619366 621462 1225 + . . scaffold343 GLEAN mRNA 618887 626946 0.427987 + . ID=CGI_10021769; scaffold43 WUBlastX LTR_Pao 76633 77382 292 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_Pao 65353 66729 1303 - . . scaffold818 GLEAN mRNA 65347 65814 0.999999 - . ID=CGI_10014508; scaffold1094 WUBlastX DNA_hAT 661839 662120 124 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661839 662120 124 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1562 WUBlastX LINE_CR1 124922 125281 246 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 132776 133189 68 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 374128 375498 1108 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold922 WUBlastX LINE_L1-Tx1 5610 6374 180 - . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_L1-Tx1 8190 8594 157 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX RC_Helitron 467567 467785 29 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 327340 327924 447 - . . . . . -1 -1 -1 . . . scaffold43562 WUBlastX DNA_TcMar-Tc1 168288 168722 64 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 168288 168722 64 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold39758 WUBlastX LINE_RTE-BovB 61591 61929 103 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold580 WUBlastX LTR_Pao 542997 543254 69 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 543949 544257 53 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold1857 WUBlastX LINE_CR1-L2 60570 61073 181 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_CR1 337216 338082 169 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 329783 330196 114 - . . . . . -1 -1 -1 . . . scaffold76 WUBlastX LTR_Gypsy 28864 29073 219 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LTR_Gypsy 149735 149836 23 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_ERV1 83353 83544 46 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold502 WUBlastX LTR_Ngaro 157837 158109 130 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_R2-Hero 310323 310430 66 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX DNA_IS4EU 102864 103298 55 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold64 WUBlastX DNA_Harbinger 127225 127548 155 - . . scaffold64 GLEAN mRNA 118246 132595 0.997548 - . ID=CGI_10005753; scaffold1324 WUBlastX LTR_Gypsy 266256 266756 210 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 404165 404413 57 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 318918 319001 26 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 95931 96014 49 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold413 WUBlastX LINE_L2 735698 736549 31 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold1337 WUBlastX DNA_TcMar-Tc1 228565 228729 58 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_MuDR 19156 19428 52 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_MuDR 19650 19775 78 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_MuDR 19936 20130 61 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1 1212986 1213552 70 + . . scaffold1179 GLEAN mRNA 1211321 1215235 0.457085 - . ID=CGI_10027415; scaffold852 WUBlastX DNA_PiggyBac 23616 24023 152 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-BovB 15243 15551 189 + . . scaffold672 GLEAN mRNA 1455 17003 0.927273 - . ID=CGI_10021021; scaffold1599 WUBlastX LINE_RTE-X 811600 812007 26 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LINE_RTE-X 28055 28585 108 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Ngaro 197169 197333 40 + . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LTR_Ngaro 49210 49683 185 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L1-Tx1 478434 478724 45 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L1-Tx1 617214 617930 72 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 247680 247898 42 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold39500 WUBlastX LTR_Gypsy 18072 18914 208 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 242030 245098 925 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_CR1 27130 28818 661 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_Academ 782114 783037 288 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_Academ 783866 784267 236 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_Academ 784467 785273 436 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_Academ 785277 785705 205 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_Academ 785717 785965 126 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 144722 146032 1014 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Pao 101131 101421 288 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 169180 171771 934 + . . scaffold77 GLEAN mRNA 166912 189780 0.993583 + . ID=CGI_10027970; scaffold533 WUBlastX LINE_L2 92328 94181 1207 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold721 WUBlastX LINE_L2 45530 47293 1057 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 636768 637001 134 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 637025 637318 113 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1445 WUBlastX LTR_Gypsy 49972 50304 183 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 69640 70800 191 - . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold339 WUBlastX LTR_Gypsy 26680 26865 43 - . . . . . -1 -1 -1 . . . C34546 WUBlastX LTR_Pao 18298 18606 184 + . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LTR_Pao 543623 543979 39 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 544096 544257 63 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold86 WUBlastX LINE_CR1 575385 575597 28 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 548816 549589 169 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; C11324 WUBlastX LTR_Gypsy 1 174 204 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_Gypsy 377065 377355 36 + . . scaffold1329 GLEAN mRNA 374236 377724 0.999633 + . ID=CGI_10015798; scaffold77 WUBlastX LTR_Ngaro 857907 858266 87 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_DIRS 484713 485366 145 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX DNA_Harbinger 30523 30825 67 - . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX DNA_Harbinger 142972 143298 175 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 200033 200659 208 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Ac 161919 162119 77 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_Penelope 1288770 1289060 163 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_Penelope 688683 689276 61 - . . scaffold1315 GLEAN mRNA 688539 696190 0.999948 - . ID=CGI_10021627; scaffold1315 WUBlastX LINE_Penelope 689371 689628 51 - . . scaffold1315 GLEAN mRNA 688539 696190 0.999948 - . ID=CGI_10021627; scaffold425 WUBlastX LINE_Penelope 179275 179508 53 - . . . . . -1 -1 -1 . . . C36014 WUBlastX DNA_TcMar-Tc2 28470 28598 21 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_RTE-X 109453 109830 62 + . . scaffold1372 GLEAN mRNA 106818 117508 0.255831 - . ID=CGI_10015663; scaffold1372 WUBlastX LINE_RTE-X 109826 110110 92 + . . scaffold1372 GLEAN mRNA 106818 117508 0.255831 - . ID=CGI_10015663; scaffold585 WUBlastX LINE_RTE-BovB 107660 108004 33 + . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LINE_RTE-BovB 108444 108872 130 + . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX LINE_RTE-BovB 46371 46841 43 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_RTE-X 99668 99778 27 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_RTE-X 280854 281516 142 + . . . . . -1 -1 -1 . . . C30816 WUBlastX LINE_RTE-X 7156 7239 37 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_RTE-X 173871 174233 79 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; C28676 WUBlastX LTR_Ngaro 2821 2973 52 - . . . . . -1 -1 -1 . . . C28676 WUBlastX LTR_Ngaro 3841 4152 78 - . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_DIRS 9535 9561 22 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_TcMar-Tc1 18076 18627 89 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Gypsy 51167 52081 95 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Gypsy 52051 53682 823 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy 565244 565672 63 - . . . . . -1 -1 -1 . . . scaffold1182 WUBlastX RC_Helitron 44568 45791 977 - . . . . . -1 -1 -1 . . . scaffold1182 WUBlastX RC_Helitron 45974 47173 284 - . . . . . -1 -1 -1 . . . scaffold36190 WUBlastX LINE_L2 15250 16371 340 + . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_RTE-BovB 588449 589411 548 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LTR_Pao 179922 180305 153 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy-Cigr 77263 78810 990 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX DNA_Helitron 1023982 1024839 91 + . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_Gypsy-Cigr 21889 22434 178 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy-Cigr 725537 726034 186 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy-Cigr 732347 732844 186 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold41242 WUBlastX LTR_Pao 32249 32611 72 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 545467 545646 82 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX DNA_hAT 391510 391770 67 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 392013 392138 38 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 393576 393671 38 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; scaffold591 WUBlastX LINE_L2 564074 564733 161 - . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_L2 188219 188365 34 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_CR1 190885 191133 103 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold1307 WUBlastX LINE_L2 192081 192758 189 - . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_CR1-L2 172982 173539 163 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 393498 393902 170 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy-Cigr 42916 43137 143 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_Kolobok-IS4 158458 158505 29 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_Kolobok-IS4 57217 58290 133 + . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold203 WUBlastX DNA_IS4EU 232909 233739 129 - . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LTR_Gypsy 204109 204594 203 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_RTE-BovB 103079 103456 116 - . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_L2 63700 65076 42 - . . scaffold42840 GLEAN mRNA 60597 70020 0.754681 + . ID=CGI_10007833; scaffold38934 WUBlastX LTR_Ngaro 20984 21286 165 - . . scaffold38934 GLEAN mRNA 14643 26625 0.999796 + . ID=CGI_10003096; scaffold602 WUBlastX LINE_Penelope 72294 72665 20 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_Penelope 202675 203322 148 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1 323447 324070 205 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LINE_L1-Tx1 9287 9592 208 - . . . . . -1 -1 -1 . . . scaffold43988 WUBlastX LINE_RTE-X 60852 61379 142 - . . scaffold43988 GLEAN mRNA 49566 61691 0.999886 - . ID=CGI_10014965; scaffold419 WUBlastX LINE_Proto2 48623 49672 96 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold115 WUBlastX LTR_DIRS 358595 358966 135 - . . . . . -1 -1 -1 . . . C28802 WUBlastX DNA_Sola 4817 5371 148 - . . . . . -1 -1 -1 . . . scaffold41740 WUBlastX DNA_Sola 128938 129765 186 - . . scaffold41740 GLEAN mRNA 128935 130074 0.579463 - . ID=CGI_10005589; scaffold449 WUBlastX LINE_L1-Tx1 145915 146127 41 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L1-Tx1 43711 43779 31 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_L1-Tx1 123419 124126 102 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 354349 354735 81 - . . . . . -1 -1 -1 . . . scaffold1654 WUBlastX DNA_hAT-Tip100 54619 56433 137 - . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 111692 113173 635 - . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX LTR_Gypsy 32945 34021 811 - . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX LTR_Gypsy 33964 34347 261 - . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX LTR_Gypsy 34345 34563 45 - . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX LTR_Gypsy 34765 34884 35 - . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX LTR_Gypsy 34884 35246 165 - . . . . . -1 -1 -1 . . . scaffold1375 WUBlastX LINE_CR1 15581 16816 800 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Gypsy 78545 78646 47 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy 373895 374368 107 - . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_L1-Tx1 235552 237069 429 - . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_L1-Tx1 237035 237973 520 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX RC_Helitron 1083347 1083883 225 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_CR1-L2 1217027 1217275 165 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_CR1-L2 581054 581371 58 + . . scaffold115 GLEAN mRNA 575453 585479 0.845977 + . ID=CGI_10021407; scaffold40836 WUBlastX LINE_CR1-L2 82549 82692 87 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold854 WUBlastX DNA_TcMar-Tc1 695018 695236 86 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy-Cigr 43049 43525 179 + . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX LINE_CR1 132737 132805 20 - . . scaffold43708 GLEAN mRNA 129367 163757 0.948572 + . ID=CGI_10011970; scaffold36664 WUBlastX LTR_Gypsy 23459 24211 167 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 531820 532395 149 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LTR_Gypsy-Cigr 83981 84685 184 - . . scaffold1773 GLEAN mRNA 83391 85072 0.980126 - . ID=CGI_10011225; scaffold722 WUBlastX LTR_Ngaro 301096 301245 102 - . . . . . -1 -1 -1 . . . scaffold722 WUBlastX LTR_Ngaro 301400 301651 99 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_hAT-hATw 391847 392524 144 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold1885 WUBlastX DNA_IS4EU 341223 341798 196 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX DNA_Kolobok 754358 754498 36 - . . scaffold82 GLEAN mRNA 743361 754636 0.569957 - . ID=CGI_10025268; scaffold82 WUBlastX DNA_Kolobok 754638 754766 54 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX DNA_Kolobok 754895 755107 47 - . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_L1-Tx1 81917 82186 145 - . . scaffold828 GLEAN mRNA 78778 92221 0.986584 - . ID=CGI_10007365; scaffold351 WUBlastX LINE_Penelope 102671 103180 169 + . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold443 WUBlastX LINE_Penelope 474574 474726 35 + . . . . . -1 -1 -1 . . . scaffold34596 WUBlastX DNA_TcMar-Tc1 6662 6757 29 + . . scaffold34596 GLEAN mRNA 238 15197 0.650923 - . ID=CGI_10001323; scaffold34596 WUBlastX DNA_TcMar-Tc1 6662 6757 29 + . . scaffold34596 GLEAN mRNA 2015 6742 0.999994 + . ID=CGI_10001324; scaffold1480 WUBlastX LINE_R2 82669 82896 62 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_PiggyBac 357736 358227 229 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-BovB 1622757 1623032 42 - . . . . . -1 -1 -1 . . . C30582 WUBlastX LINE_RTE-BovB 2687 3166 176 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Sola 253749 254006 142 + . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1-Tx1 258319 258780 120 + . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX DNA_TcMar-Tc1 218073 218621 164 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Maverick 63272 64786 201 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Gypsy-Cigr 229195 230781 520 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_RTE-X 225084 227135 844 + . . . . . -1 -1 -1 . . . C20458 WUBlastX DNA_IS 3 983 1603 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L1-Tx1 226225 227808 338 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L1-Tx1 227784 228434 382 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L1-Tx1 228395 229066 218 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L1-Tx1 229059 229643 334 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 105490 106308 402 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 357527 358372 336 - . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Pao 31699 32259 287 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 359438 359962 94 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy-Cigr 173688 174311 62 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX RC_Helitron 192435 192731 152 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Gypsy 125343 126143 886 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 126997 127155 80 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold42530 WUBlastX LTR_Pao 38225 38320 58 - . . . . . -1 -1 -1 . . . C12568 WUBlastX LTR_Copia 2 196 270 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_Merlin 209671 209742 64 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_CR1-L2 345473 345631 100 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1-L2 345473 345631 100 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold41700 WUBlastX LINE_CR1-L2 111614 112204 213 - . . . . . -1 -1 -1 . . . C26108 WUBlastX LINE_CR1-L2 2398 2700 130 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LINE_CR1-L2 12781 13083 130 + . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold248 WUBlastX LINE_L2 275604 276989 112 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_L2 457281 457745 107 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_CR1 486227 486346 34 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LTR_Gypsy 83713 84864 147 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 393905 394525 95 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold664 WUBlastX LTR_Ngaro 496825 496932 35 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 497831 498055 67 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_DIRS 180216 180737 182 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_IS4EU 207772 207843 20 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_Kolobok-IS4 89505 90167 178 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold612 WUBlastX LTR_Gypsy 77563 77607 21 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_Harbinger 85982 86431 184 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX DNA_Harbinger 39484 39597 63 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX DNA_Harbinger 39733 39849 70 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_L1 15687 16016 127 + . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_L1 139287 140012 163 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L2 374080 374814 163 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_L2 246270 246974 146 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LINE_L2 401647 401805 21 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L2 686494 687360 114 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LINE_CR1 439848 439967 29 - . . . . . -1 -1 -1 . . . scaffold34356 WUBlastX LTR_Ngaro 7612 8055 186 + . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LINE_Penelope 97709 98362 165 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_Penelope 68846 69244 68 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX DNA_Maverick 89729 89935 69 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_RTE-BovB 98364 98897 90 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 422813 423193 96 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-X 192397 192687 42 - . . scaffold672 GLEAN mRNA 185206 197456 1 + . ID=CGI_10021027; scaffold40786 WUBlastX LINE_RTE-X 10633 10989 43 + . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 69662 69931 81 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 361039 361578 43 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc1 38104 38268 69 - . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Ngaro 31446 31817 77 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Ngaro 32249 32377 41 + . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX LINE_L1-Tx1 107559 107942 152 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1732 WUBlastX LTR_Pao 31027 31572 355 + . . . . . -1 -1 -1 . . . C31300 WUBlastX LTR_Gypsy 7104 7694 429 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_Gypsy 409956 410075 27 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_Gypsy 413350 413754 118 + . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 68258 68662 369 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 728884 729744 575 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 730022 730552 220 - . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_Pao 22889 23020 23 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_L2 340733 341071 124 + . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX LINE_L2 15590 15757 61 + . . scaffold1376 GLEAN mRNA 13081 17616 0.523289 - . ID=CGI_10002794; scaffold1376 WUBlastX LINE_L2 15775 16107 129 + . . scaffold1376 GLEAN mRNA 13081 17616 0.523289 - . ID=CGI_10002794; scaffold38162 WUBlastX LTR_Gypsy 31367 32149 206 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 277325 277711 49 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 194209 194733 234 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 238864 239193 261 + . . . . . -1 -1 -1 . . . scaffold1418 WUBlastX DNA_Kolobok-IS4 16742 17404 162 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_IS4EU 367267 367467 67 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LINE_Penelope 11484 11684 45 + . . scaffold1323 GLEAN mRNA 5100 53779 0.182338 + . ID=CGI_10009080; scaffold1665 WUBlastX LTR_ERVK 18147 18425 26 + . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L2 113088 113531 219 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold1558 WUBlastX LINE_L1 40501 40854 100 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold315 WUBlastX LINE_RTE-X 508604 509698 46 - . . scaffold315 GLEAN mRNA 498248 518855 0.999027 + . ID=CGI_10020433; scaffold1480 WUBlastX LINE_R2 69801 70124 47 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_DIRS 709564 709782 116 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_DIRS 709791 710039 71 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_DIRS 710036 710263 42 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy 762978 763043 23 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L1-Tx1 455836 456270 193 + . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_L1-Tx1 126754 127359 186 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1-Tx1 11004 11480 114 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1574 WUBlastX LINE_L1-Tx1 128535 128708 25 - . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Gypsy 106556 107044 490 + . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Gypsy 107254 107496 294 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 4145 5119 503 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 624167 624739 456 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold210 WUBlastX LTR_Pao 122580 126785 1137 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 36577 36813 208 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Gypsy 142714 143949 503 + . . . . . -1 -1 -1 . . . scaffold37432 WUBlastX LTR_Pao 1 513 241 + . . . . . -1 -1 -1 . . . scaffold41772 WUBlastX LTR_Gypsy-Cigr 99437 99622 46 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 35944 36405 225 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_hAT-Tip100 55951 56787 193 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 76531 77325 112 + . . . . . -1 -1 -1 . . . scaffold37844 WUBlastX LINE_CR1 27805 28419 222 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L2 615725 615943 56 - . . . . . -1 -1 -1 . . . C28006 WUBlastX LINE_CR1-L2 3297 3524 94 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_CR1 127569 127868 123 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold301 WUBlastX LINE_CR1 72275 72385 32 + . . . . . -1 -1 -1 . . . scaffold42214 WUBlastX LTR_Gypsy 14315 15175 212 - . . . . . -1 -1 -1 . . . scaffold42604 WUBlastX LTR_DIRS 102968 103606 221 - . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_L2 188383 188742 201 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold450 WUBlastX LINE_L1 126736 127146 80 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_L1 390295 390630 87 + . . scaffold1221 GLEAN mRNA 352551 403939 0.753368 - . ID=CGI_10019745; scaffold354 WUBlastX LINE_Penelope 1035901 1036710 190 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 473205 473615 20 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 596375 596428 29 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold43878 WUBlastX LINE_RTE-X 69373 69621 68 + . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_RTE-X 31248 31778 183 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_Sola 151964 153823 135 + . . scaffold1403 GLEAN mRNA 150469 154318 0.999879 + . ID=CGI_10020163; scaffold332 WUBlastX LINE_L1-Tx1 150763 150858 55 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 42860 43432 262 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold40988 WUBlastX LINE_L1-Tx1 19372 23154 1578 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Gypsy 306577 307434 111 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_L2 142425 142931 170 - . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold1009 WUBlastX DNA_PiggyBac 511687 512199 206 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 10861 11334 269 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy-Cigr 205766 205837 28 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_DIRS 23834 23986 22 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold835 WUBlastX LTR_DIRS 51305 51445 42 + . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX LTR_Ngaro 41342 42034 134 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 321621 322040 140 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 154588 155172 183 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 155229 155405 60 + . . . . . -1 -1 -1 . . . C26936 WUBlastX LTR_Gypsy 1323 1346 20 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold773 WUBlastX DNA_IS4EU 189864 190295 69 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-Ac 487683 487751 24 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold880 WUBlastX DNA_Kolobok 673937 674137 46 - . . scaffold880 GLEAN mRNA 673595 686654 0.926854 - . ID=CGI_10022204; scaffold354 WUBlastX LINE_Penelope 1035850 1036557 220 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_RTE-BovB 366505 366903 144 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold102 WUBlastX LINE_RTE-BovB 1278896 1279102 116 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1280117 1280311 34 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold1579 WUBlastX DNA_TcMar-Pogo 278283 278384 25 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LTR_DIRS 59222 59893 137 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LTR_DIRS 60018 60182 72 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 298479 299078 421 + . . . . . -1 -1 -1 . . . scaffold35598 WUBlastX LTR_Gypsy 4262 6577 912 + . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LINE_RTE-X 13359 14330 491 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LINE_RTE-X 14324 14467 77 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LINE_RTE-X 14470 14940 267 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LINE_RTE-X 14918 15313 277 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LINE_RTE-X 16239 16655 145 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LINE_RTE-X 16921 17985 585 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX RC_Helitron 8503 11436 1889 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LTR_Pao 582606 585029 1584 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold1318 WUBlastX DNA_Maverick 159468 161873 1087 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 36812 37531 563 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 39257 39568 113 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy 371985 373610 960 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy 373706 374296 199 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LTR_Pao 214197 215270 164 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold1832 WUBlastX LINE_CR1-L2 547236 547553 97 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX DNA_Harbinger 10476 10592 40 + . . . . . -1 -1 -1 . . . C35840 WUBlastX DNA_Harbinger 1813 2010 59 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold77 WUBlastX LTR_Gypsy 1453962 1455050 164 - . . scaffold77 GLEAN mRNA 1435771 1455368 0.401661 + . ID=CGI_10028040; scaffold1267 WUBlastX DNA_MuDR 270438 271568 229 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_MuDR 87952 88761 242 + . . scaffold1221 GLEAN mRNA 84840 95252 0.99967 - . ID=CGI_10019730; scaffold1480 WUBlastX LINE_L1 157844 159706 244 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold1214 WUBlastX LTR_Ngaro 337814 338200 91 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Ngaro 338167 338340 68 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_Penelope 572056 572238 39 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold393 WUBlastX LINE_RTE-X 80189 80530 281 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LINE_RTE-X 90573 90626 27 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_RTE-X 373281 373397 22 - . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX DNA_Sola 18573 18842 191 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_L1-Tx1 304431 305426 66 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_TcMar-Tc1 1050420 1050875 129 - . . . . . -1 -1 -1 . . . scaffold41852 WUBlastX LINE_L1-Tx1 1063 1398 181 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Gypsy 990242 990862 150 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold796 WUBlastX LTR_Gypsy 52270 55605 1815 + . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy 20672 22285 207 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 106496 106915 373 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 175805 176626 118 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_CR1-L2 224171 224557 158 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold118 WUBlastX LINE_CR1-L2 72790 73296 225 + . . scaffold118 GLEAN mRNA 64475 78115 0.835706 + . ID=CGI_10004583; C32532 WUBlastX LINE_CR1 930 1655 232 - . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LINE_L2 470930 471067 32 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 188919 189314 51 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188919 189314 51 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold1174 WUBlastX LTR_Gypsy 475097 475654 32 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy 476743 476901 34 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy 477075 478070 78 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_DIRS 88119 88982 242 - . . . . . -1 -1 -1 . . . scaffold33594 WUBlastX LTR_Ngaro 14144 14872 187 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_L2 196564 196605 21 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LTR_Gypsy 15293 15436 23 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 291563 291853 111 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Gypsy 357020 357970 249 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold1857 WUBlastX LTR_Gypsy 83791 84699 223 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 89048 89110 21 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 537346 537735 242 + . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX DNA_Harbinger 209276 209785 227 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-BovB 33125 33193 54 + . . . . . -1 -1 -1 . . . scaffold32436 WUBlastX LTR_Ngaro 473 1408 213 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1 166376 167059 248 - . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LINE_L1 37621 38352 218 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L1-Tx1 1216180 1216812 141 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-X 229137 229910 184 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 174 638 256 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_RTE-X 367102 367524 53 + . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 26610 27053 237 + . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_L1-Tx1 105154 105876 143 + . . . . . -1 -1 -1 . . . scaffold1184 WUBlastX LINE_L1-Tx1 2826 3470 222 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX DNA_TcMar-Tc1 256049 256747 210 - . . scaffold914 GLEAN mRNA 255125 272585 0.997448 + . ID=CGI_10018883; scaffold1402 WUBlastX LINE_L1-Tx1 136815 136919 73 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX DNA_Zator 636039 636584 151 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX DNA_Zator 636685 636843 101 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 47208 47561 70 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_L2 14731 15132 32 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold750 WUBlastX LINE_L2 15815 16009 31 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold987 WUBlastX LINE_L2 81483 81938 246 + . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold739 WUBlastX LTR_Pao 39262 39993 145 - . . . . . -1 -1 -1 . . . scaffold40442 WUBlastX DNA_PiggyBac 89720 89914 93 + . . . . . -1 -1 -1 . . . scaffold40442 WUBlastX DNA_PiggyBac 90286 90651 150 + . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_Pao 22919 22996 24 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Gypsy 25264 25572 216 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Gypsy 25568 25645 23 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_ERV1 693333 694016 156 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_Jockey 491072 491137 27 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 98238 99245 280 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold42490 WUBlastX LTR_Gypsy 11723 12475 229 - . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX LINE_L1-Tx1 10424 10741 22 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 32397 32864 162 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold43844 WUBlastX LTR_Gypsy 323169 323990 285 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-X 271377 271625 26 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_Sola 49002 50165 140 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1062782 1063678 233 - . . . . . -1 -1 -1 . . . C35794 WUBlastX LTR_Pao 8267 9502 479 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1-Tx1 406125 407411 659 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1-Tx1 407534 409882 1136 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_RTE-BovB 155929 158844 2173 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 588290 589531 1109 - . . . . . -1 -1 -1 . . . scaffold35926 WUBlastX DNA_hAT 26378 26509 35 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 270351 270413 21 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_RTE-BovB 366893 367021 82 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold1597 WUBlastX DNA_En-Spm 120634 121194 202 + . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX DNA_En-Spm 121176 121337 33 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX LTR_DIRS? 389692 390219 182 + . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LTR_Gypsy 118838 119242 38 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold1477 WUBlastX DNA_IS4EU 36787 36969 91 + . . . . . -1 -1 -1 . . . C35716 WUBlastX DNA_Kolobok-IS4 16973 17275 71 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 27134 27262 49 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 27765 28067 59 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 28624 28917 106 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1 692048 692527 21 - . . . . . -1 -1 -1 . . . scaffold1706 WUBlastX LINE_L1 46991 47521 29 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; C33378 WUBlastX DNA_TcMar-Fot1 2423 2656 122 - . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX LINE_RTE-X 5279 5863 125 + . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 89310 89777 235 + . . . . . -1 -1 -1 . . . scaffold868 WUBlastX DNA_TcMar-Tc1 138873 139145 58 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX DNA_TcMar-Tc1 927449 928021 208 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_L1-Tx1 177453 181244 1877 + . . scaffold1350 GLEAN mRNA 175145 193937 0.999592 - . ID=CGI_10017302; scaffold37134 WUBlastX LTR_Gypsy-Troyk 5014 5826 461 + . . . . . -1 -1 -1 . . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 5822 5926 43 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 39579 40025 267 + . . . . . -1 -1 -1 . . . scaffold36342 WUBlastX LTR_Gypsy 16910 19789 1763 + . . . . . -1 -1 -1 . . . scaffold640 WUBlastX LTR_Gypsy 148882 150330 704 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Pao 201224 201454 40 + . . . . . -1 -1 -1 . . . C35786 WUBlastX LINE_L1 15269 15994 207 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 545539 546045 158 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 584255 584650 187 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold264 WUBlastX LTR_Gypsy-Cigr 63882 64430 303 + . . scaffold264 GLEAN mRNA 55806 65386 0.919425 + . ID=CGI_10003463; scaffold594 WUBlastX LTR_Gypsy-Cigr 2555 3562 295 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 607872 608081 56 + . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LTR_DIRS 69557 69871 118 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Harbinger 34690 34830 43 + . . . . . -1 -1 -1 . . . C27638 WUBlastX LTR_Gypsy 4475 4858 339 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 100933 101223 225 - . . . . . -1 -1 -1 . . . scaffold1727 WUBlastX RC_Helitron 41839 42657 213 - . . scaffold1727 GLEAN mRNA 27437 43036 0.635377 + . ID=CGI_10002672; scaffold1159 WUBlastX LINE_L1 191623 191874 48 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Gypsy 210413 210556 80 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 69327 69497 108 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 69502 69804 179 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_L1-Tx1 6526 7143 178 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Pao 205638 206678 956 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold6 WUBlastX LTR_Pao 126541 127434 482 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold1770 WUBlastX LINE_RTE-BovB 1218 1268 48 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_CR1 244819 245490 261 + . . . . . -1 -1 -1 . . . C28006 WUBlastX LINE_CR1-L2 3497 3862 133 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 117639 118085 279 - . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LTR_Ngaro 45832 46332 289 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 726073 727014 220 - . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold41882 WUBlastX LTR_Gypsy 131177 131302 47 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 226259 226333 25 - . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LTR_Gypsy 79979 80776 266 - . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LINE_L1-Tx1 136568 137107 248 - . . scaffold647 GLEAN mRNA 124845 138037 0.631256 + . ID=CGI_10006931; scaffold1817 WUBlastX LINE_L1-Tx1 16353 16541 44 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LINE_L1-Tx1 17748 18128 99 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LINE_L1-Tx1 18119 18400 91 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; C31694 WUBlastX LINE_L1-Tx1 2 415 271 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 458823 459569 233 - . . scaffold107 GLEAN mRNA 449056 473669 0.986168 - . ID=CGI_10025055; scaffold1843 WUBlastX LINE_RTE-X 99480 99569 34 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_RTE-X 100093 100155 33 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_Maverick 134220 134549 99 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 561633 562631 234 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_RTE-X 251764 252351 308 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1-Tx1 124731 125060 44 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold1123 WUBlastX LTR_Gypsy-Cigr 135932 136759 214 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX DNA_TcMar-Tc1 111499 111930 234 - . . . . . -1 -1 -1 . . . scaffold36886 WUBlastX RC_Helitron 7331 7972 240 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc1 802866 803072 33 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc1 803165 803887 169 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_Academ 469283 469387 24 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 469910 470116 92 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_Academ 470485 470595 46 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 75595 76158 154 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold621 WUBlastX LTR_Gypsy 427970 428338 54 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LTR_Gypsy 63564 64082 122 + . . . . . -1 -1 -1 . . . C23772 WUBlastX DNA_Crypton 1019 1366 169 - . . . . . -1 -1 -1 . . . C23772 WUBlastX DNA_Crypton 1543 1782 78 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX DNA_Crypton 292349 292588 78 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX DNA_Crypton 292765 293112 169 + . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX DNA_Helitron 44291 44905 131 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold453 WUBlastX LTR_Gypsy 306518 306619 21 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1403 WUBlastX DNA_TcMar-Marin 229495 230124 159 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 623055 623321 72 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 623392 624258 59 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 624523 624726 74 - . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 169785 170144 40 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold664 WUBlastX DNA_PiggyBac 453823 454221 196 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_R2 21968 22801 261 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_R2 22792 22980 61 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_R2 23001 23105 29 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_RTE-X 91956 92267 123 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold1492 WUBlastX LINE_L1-Tx1 82728 83192 77 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LINE_L1-Tx1 18274 18540 48 - . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 42029 42160 36 - . . . . . -1 -1 -1 . . . scaffold1394 WUBlastX DNA_hAT 52827 54203 317 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Pao 77374 77649 129 - . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Pao 78258 78503 65 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_CR1 22290 22811 129 - . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LTR_Gypsy 73023 73187 32 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX DNA_IS4EU 349982 350734 85 - . . scaffold44 GLEAN mRNA 346940 353357 0.748127 - . ID=CGI_10016836; scaffold227 WUBlastX DNA_TcMar-Marin 315667 315924 134 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_L1 929772 929918 46 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-BovB 22862 23314 322 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX DNA_Maverick 63810 64235 107 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_Sola 59007 59717 87 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 80615 82303 1265 - . . . . . -1 -1 -1 . . . scaffold1814 WUBlastX LTR_Gypsy 29922 32945 2707 + . . . . . -1 -1 -1 . . . scaffold42208 WUBlastX LTR_Gypsy 115907 119968 2703 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX RC_Helitron 224147 226585 1695 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX RC_Helitron 226717 227694 549 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX RC_Helitron 227694 228221 278 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 6755 6961 54 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LTR_Gypsy-Cigr 76376 76867 136 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_CR1 803634 804218 171 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LTR_Ngaro 29340 29783 219 - . . scaffold42880 GLEAN mRNA 29055 29522 0.999999 - . ID=CGI_10007997; scaffold203 WUBlastX LTR_Ngaro 151731 152174 219 + . . . . . -1 -1 -1 . . . scaffold1814 WUBlastX LTR_Ngaro 79781 79909 25 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Ngaro 357248 357952 218 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold38292 WUBlastX LTR_Ngaro 34155 34910 265 - . . scaffold38292 GLEAN mRNA 26899 37380 0.771739 - . ID=CGI_10002691; scaffold87 WUBlastX LTR_Gypsy 129134 129667 259 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1 241058 241702 110 - . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LINE_L1 56624 57460 89 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX DNA_TcMar-Fot1 103047 103310 87 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1059834 1060508 323 - . . . . . -1 -1 -1 . . . scaffold28372 WUBlastX LINE_RTE-X 3627 3887 164 + . . . . . -1 -1 -1 . . . scaffold28372 WUBlastX LINE_RTE-X 3896 4525 75 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LINE_RTE-X 146237 146521 87 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX DNA_TcMar-Tc1 46963 47775 276 + . . . . . -1 -1 -1 . . . C32122 WUBlastX DNA_TcMar-Tc1 5982 6980 145 - . . . . . -1 -1 -1 . . . scaffold1422 WUBlastX DNA_TcMar-Tc1 65125 65832 203 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Pao 442047 442604 364 + . . scaffold150 GLEAN mRNA 440940 442586 0.995484 + . ID=CGI_10028609; scaffold41636 WUBlastX LTR_Pao 111906 112652 357 + . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LTR_Pao 27143 27223 20 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_DIRS 520088 520393 156 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_DIRS 520442 520774 155 + . . . . . -1 -1 -1 . . . scaffold42566 WUBlastX LINE_RTE-BovB 40651 40920 79 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX DNA_En-Spm 130409 130891 104 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Gypsy 177886 178593 259 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Gypsy 921740 922651 217 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold40134 WUBlastX DNA_Harbinger 29353 29472 69 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold243 WUBlastX LTR_Gypsy 116919 116960 20 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold39598 WUBlastX LINE_L1-Tx1 12787 13191 172 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_L1-Tx1 196864 197766 218 + . . scaffold43146 GLEAN mRNA 193579 199513 0.963019 - . ID=CGI_10009047; scaffold1121 WUBlastX LINE_L2 22685 22975 110 - . . . . . -1 -1 -1 . . . scaffold1121 WUBlastX LINE_L2 23005 23259 107 - . . . . . -1 -1 -1 . . . scaffold1121 WUBlastX LINE_L2 23277 23540 131 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Ngaro 474488 475039 321 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Ngaro 119502 119795 60 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 176826 177557 260 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold818 WUBlastX LTR_DIRS 98688 98957 90 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_IS4EU 233856 234380 52 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_En-Spm 91943 92515 198 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Harbinger 414185 414334 66 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold337 WUBlastX LTR_Gypsy 490375 490878 46 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold150 WUBlastX LTR_Gypsy 797570 797779 47 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 291485 291853 105 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Kolobok 485268 485405 39 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Kolobok 485593 485778 98 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Kolobok 485934 486047 55 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Kolobok 486555 486677 82 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Kolobok 486760 486888 99 + . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1 165718 165828 33 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LINE_L1-Tx1 142639 143799 245 + . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX DNA_Kolobok 48196 48681 173 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_Proto2 628759 630786 256 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 324351 324659 138 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold1009 WUBlastX LINE_RTE-X 457252 457809 126 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-X 1428 1736 86 - . . . . . -1 -1 -1 . . . scaffold35336 WUBlastX LINE_L1-Tx1 13286 14593 142 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1-Tx1 252145 252951 210 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_CR1 83155 83349 60 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L1 360131 361054 238 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_TcMar-Tc1 211507 212022 275 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Gypsy-Cigr 291097 291141 29 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Gypsy-Cigr 291794 292048 167 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 349666 350061 126 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 350054 350428 129 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 350630 350866 66 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 1150878 1151627 353 + . . . . . -1 -1 -1 . . . scaffold261 WUBlastX DNA_Harbinger 12250 12852 309 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_Kolobok-IS4 213539 213904 43 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_Kolobok-IS4 214244 214381 85 + . . . . . -1 -1 -1 . . . scaffold1544 WUBlastX DNA_hAT-Ac 12172 12990 291 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_L1 398443 399342 136 + . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX LINE_RTE-X 396986 397126 32 + . . . . . -1 -1 -1 . . . scaffold29534 WUBlastX LINE_RTE-X 1313 2338 253 + . . scaffold29534 GLEAN mRNA 32 6456 1 - . ID=CGI_10000544; scaffold43616 WUBlastX LINE_RTE-X 205179 205319 32 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold37880 WUBlastX DNA_Maverick 15409 15993 352 + . . scaffold37880 GLEAN mRNA 2966 17075 0.52423 - . ID=CGI_10002532; scaffold992 WUBlastX LINE_L1-Tx1 167969 168490 32 - . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1-Tx1 170658 170765 27 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_L1-Tx1 131415 132401 102 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_L1-Tx1 132527 132757 122 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX DNA_TcMar-Tc1 392619 393494 293 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Tc1 67942 68682 275 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_TcMar-Tc1 412075 412956 259 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_DIRS 52303 52686 56 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 238882 239280 243 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Gypsy 232162 232968 375 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LTR_Pao 128628 128786 47 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold1174 WUBlastX DNA_Harbinger 978632 978892 203 - . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 979433 979645 163 - . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold544 WUBlastX LINE_L1 209819 210052 72 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold1036 WUBlastX DNA_Maverick 202361 202837 219 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 203226 203390 76 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1714 WUBlastX LINE_RTE-X 21841 21939 21 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_RTE-X 22095 22841 278 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_RTE-X 22807 22965 52 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-BovB 34641 34781 151 + . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_RTE-BovB 71895 72011 57 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_Ngaro 278180 278356 118 - . . scaffold172 GLEAN mRNA 274118 285723 0.998306 - . ID=CGI_10013528; scaffold172 WUBlastX LTR_Ngaro 278293 278829 108 - . . scaffold172 GLEAN mRNA 274118 285723 0.998306 - . ID=CGI_10013528; scaffold1020 WUBlastX LTR_Gypsy 258444 259112 258 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L1-Tx1 404688 404909 93 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1-Tx1 126496 126915 138 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 83717 84010 152 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold1889 WUBlastX LINE_CR1-L2 195656 196321 291 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_CR1 435336 435473 20 + . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_L2 386244 386417 44 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_L2 386456 387079 261 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_L2 450330 450656 109 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Gypsy 53720 54403 270 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_Harbinger 27418 27699 219 + . . scaffold40680 GLEAN mRNA 27135 28116 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27418 27699 219 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold43844 WUBlastX LTR_Gypsy 325676 325840 37 - . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_CR1 194094 194237 32 + . . scaffold44098 GLEAN mRNA 188555 213785 0.544557 + . ID=CGI_10017708; scaffold163 WUBlastX LINE_RTE-X 938 1264 103 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 349895 350026 48 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_Sola 233275 234723 379 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_L1-Tx1 455936 456316 204 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L1 386395 386670 67 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Gypsy 306704 306784 21 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1424 WUBlastX LTR_Gypsy 31166 31837 75 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy 295638 296414 206 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LTR_Gypsy 210720 212078 346 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1-Tx1 115340 115444 67 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1 126771 127025 28 + . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LINE_L1-Tx1 7137 7838 211 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-BovB 443997 444260 160 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-BovB 444566 445084 216 + . . . . . -1 -1 -1 . . . scaffold43064 WUBlastX LINE_RTE-X 21283 21540 35 - . . scaffold43064 GLEAN mRNA 2241 22972 0.292417 + . ID=CGI_10008625; scaffold198 WUBlastX LINE_RTE-X 1181794 1182795 116 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 1182789 1183376 95 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_CR1 1184559 1185149 64 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy-Cigr 377419 377829 70 + . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LTR_Gypsy 33280 33936 382 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Gypsy 498040 498321 175 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 18794 18970 53 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L1-Tx1 888740 889537 50 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold733 WUBlastX LINE_L1-Tx1 889816 890124 190 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold1241 WUBlastX LINE_L1-Tx1 207081 207356 76 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1-Tx1 208383 208676 141 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_TcMar-Tigge 209793 210350 158 - . . . . . -1 -1 -1 . . . C18020 WUBlastX LTR_Gypsy 10 558 400 + . . . . . -1 -1 -1 . . . scaffold35430 WUBlastX LINE_RTE-X 18282 18512 34 + . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX DNA_TcMar-Marin 386017 386082 24 - . . . . . -1 -1 -1 . . . scaffold441 WUBlastX LTR_DIRS 46887 47903 223 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1-Tx1 189175 189351 23 - . . . . . -1 -1 -1 . . . scaffold1501 WUBlastX DNA_hAT-Tip100 6635 7033 101 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LTR_Pao 271733 273583 363 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold1014 WUBlastX DNA_TcMar-Tc1 239790 240833 299 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L2 139679 140938 278 - . . . . . -1 -1 -1 . . . scaffold40140 WUBlastX LTR_Gypsy 39477 40274 403 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 653746 653925 107 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LTR_Gypsy 32395 32640 128 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold790 WUBlastX LTR_Gypsy 103353 104015 282 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX DNA_MuDR 272503 272724 81 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_Merlin 231596 232288 342 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_TcMar-Pogo 51190 51564 60 + . . scaffold1888 GLEAN mRNA 49981 53887 0.998764 + . ID=CGI_10013292; scaffold1605 WUBlastX LINE_L1 829011 829220 75 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 844802 845440 371 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Pao 184427 185563 318 + . . . . . -1 -1 -1 . . . scaffold42784 WUBlastX LTR_Pao 52374 52808 164 + . . . . . -1 -1 -1 . . . scaffold42784 WUBlastX LTR_Pao 53577 53786 26 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 431222 431755 283 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 188807 188917 41 - . . . . . -1 -1 -1 . . . C33378 WUBlastX DNA_TcMar-Fot1 3149 3409 176 - . . . . . -1 -1 -1 . . . C33378 WUBlastX DNA_TcMar-Fot1 3423 3692 99 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 153439 153519 62 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 154144 154767 359 + . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_L1-Tx1 511248 511478 38 + . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold163 WUBlastX LINE_CR1-L2 81570 83969 152 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX DNA_En-Spm 53353 55116 334 + . . scaffold1729 GLEAN mRNA 50402 60273 0.999674 + . ID=CGI_10008485; scaffold522 WUBlastX LTR_Gypsy 557135 557476 192 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 555724 556293 62 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 556303 556833 194 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold1703 WUBlastX LTR_Ngaro 197332 198378 307 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_Harbinger 392824 393309 174 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold664 WUBlastX DNA_Harbinger 393287 393658 125 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold227 WUBlastX DNA_TcMar-Marin 315285 315599 130 + . . . . . -1 -1 -1 . . . scaffold227 WUBlastX DNA_TcMar-Marin 315589 315933 123 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1 474860 475048 40 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold610 WUBlastX LINE_RTE-X 616452 617957 212 - . . . . . -1 -1 -1 . . . scaffold458 WUBlastX DNA_Sola 62285 62368 45 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 621566 622261 193 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold457 WUBlastX LTR_Ngaro 395793 396044 125 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LTR_Gypsy-Cigr 6548 7285 434 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_L1 35567 35803 51 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Ngaro 142006 142386 242 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Ngaro 142392 142610 65 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-BovB 34475 34648 233 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-BovB 34779 34904 90 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 849514 849675 58 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Gypsy 7175 7711 75 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold772 WUBlastX DNA_hAT-Tip100 435181 435705 114 - . . . . . -1 -1 -1 . . . scaffold1893 WUBlastX LTR_Gypsy-Cigr 184340 185788 360 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX DNA_hAT 165610 166335 56 + . . scaffold977 GLEAN mRNA 164557 166422 1 + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 165610 166335 56 + . . scaffold977 GLEAN mRNA 146070 167200 0.562252 - . ID=CGI_10017163; scaffold43242 WUBlastX DNA_En-Spm 9060 9638 266 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_En-Spm 9601 9861 71 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_En-Spm 9878 10288 51 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy 190574 191101 241 + . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 38944 40110 271 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX LTR_Ngaro 107640 108605 320 - . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX LTR_Ngaro 19969 20244 153 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 636464 636718 224 - . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX DNA_IS4EU 61374 61748 51 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX DNA_IS4EU 61814 62377 345 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_IS4EU 425909 426592 413 - . . . . . -1 -1 -1 . . . scaffold43366 WUBlastX DNA_IS4EU 85028 85759 410 + . . . . . -1 -1 -1 . . . C22212 WUBlastX LTR_Gypsy 1622 1738 43 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 242794 242874 40 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_TcMar-m44 23872 24126 71 - . . . . . -1 -1 -1 . . . scaffold930 WUBlastX DNA_Merlin 239848 240240 26 + . . scaffold930 GLEAN mRNA 232511 243304 0.84036 - . ID=CGI_10010203; scaffold930 WUBlastX DNA_Merlin 241083 241574 292 + . . scaffold930 GLEAN mRNA 232511 243304 0.84036 - . ID=CGI_10010203; scaffold1186 WUBlastX LINE_Penelope 131261 132457 378 + . . . . . -1 -1 -1 . . . C29968 WUBlastX LINE_RTE-X 2467 3612 345 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1605860 1606288 204 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold1532 WUBlastX LTR_Gypsy 652500 652895 137 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 87860 88168 83 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_R2-Hero 222104 222370 125 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_R2-Hero 223171 223695 116 - . . . . . -1 -1 -1 . . . C32098 WUBlastX DNA_TcMar-Tc1 4579 4800 49 - . . . . . -1 -1 -1 . . . scaffold38438 WUBlastX LTR_Pao 7628 8233 252 - . . . . . -1 -1 -1 . . . C23860 WUBlastX LINE_L2 1556 2410 364 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_IS4EU 50642 51709 297 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 204592 204678 21 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy 278375 278818 161 - . . . . . -1 -1 -1 . . . scaffold75 WUBlastX DNA_TcMar-Marin 48912 49421 287 + . . scaffold75 GLEAN mRNA 46839 68019 0.92374 - . ID=CGI_10005790; C21380 WUBlastX LINE_Penelope 308 1318 344 - . . . . . -1 -1 -1 . . . scaffold37092 WUBlastX LINE_L1 27959 28231 20 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_L1-Tx1 21105 21389 77 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_L1-Tx1 21373 21714 196 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 199540 200214 148 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold150 WUBlastX LINE_L1-Tx1 534033 534140 54 + . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX DNA_TcMar-Tc1 259837 260583 332 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_L1 500847 500978 30 + . . . . . -1 -1 -1 . . . C34856 WUBlastX LTR_Gypsy 9214 9450 124 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold1267 WUBlastX LTR_Gypsy 369773 370522 23 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Ngaro 311219 311887 268 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 143026 143922 104 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 129242 129676 344 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Gypsy 489176 489748 161 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold1423 WUBlastX LINE_L1-Tx1 699115 699270 53 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 699821 700237 132 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 701014 701415 82 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 172865 173398 60 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 174174 174425 66 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 174493 174618 39 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 175247 175552 115 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 175531 175671 45 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 917239 918051 328 + . . . . . -1 -1 -1 . . . scaffold34872 WUBlastX DNA_Sola 2037 2666 262 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1-Tx1 196726 196986 56 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_DIRS 8346 8720 84 + . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LTR_Gypsy 6043 7350 397 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX RC_Helitron 438743 439180 63 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold1277 WUBlastX LINE_RTE-X 82675 82872 75 + . . scaffold1277 GLEAN mRNA 76656 92744 0.765999 - . ID=CGI_10008022; scaffold1277 WUBlastX LINE_RTE-X 82953 83873 277 + . . scaffold1277 GLEAN mRNA 76656 92744 0.765999 - . ID=CGI_10008022; scaffold1847 WUBlastX LINE_RTE-X 67722 68738 306 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_Maverick 406988 407563 276 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 684845 686200 121 + . . . . . -1 -1 -1 . . . scaffold441 WUBlastX LTR_DIRS 44548 45000 297 - . . . . . -1 -1 -1 . . . scaffold441 WUBlastX LTR_DIRS 44967 45485 128 - . . . . . -1 -1 -1 . . . scaffold34388 WUBlastX LTR_Pao 4110 4646 322 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L2 28502 28984 187 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 195287 195646 68 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1 979853 980584 358 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LTR_Ngaro 149443 150381 342 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 154539 155477 342 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_L2 468105 468233 58 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1 366983 367477 113 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 380560 380820 103 + . . . . . -1 -1 -1 . . . C33730 WUBlastX LINE_L1-Tx1 14735 15235 55 + . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LTR_Gypsy 34985 35146 20 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_TcMar-Marin 1060616 1060861 124 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_TcMar-Marin 1059762 1060427 348 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 225130 225954 117 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_TcMar-Tc2 228567 229124 468 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 795525 795803 42 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 199292 199483 31 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold867 WUBlastX DNA_TcMar-Tc1 1067 1462 181 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LTR_Pao 94157 94276 32 + . . scaffold632 GLEAN mRNA 94211 107626 0.991776 + . ID=CGI_10018438; scaffold535 WUBlastX LTR_DIRS 10080 10172 49 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX DNA_Harbinger 240595 240978 130 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_hAT-Ac 93895 94041 52 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold1133 WUBlastX DNA_IS4EU 37204 37812 253 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_Penelope 496043 496222 105 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_L1-Tx1 5274 5525 214 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_L1-Tx1 5948 6409 82 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 264198 264332 96 - . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX DNA_TcMar-Tc1 188667 189695 454 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LINE_L1-Tx1 329080 329304 50 - . . scaffold43920 GLEAN mRNA 326902 340720 1 - . ID=CGI_10014000; C24456 WUBlastX DNA_Zator 1250 1744 69 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 106386 106502 50 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 681329 681991 161 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold48 WUBlastX DNA_TcMar-Tc2 530338 530628 187 + . . scaffold48 GLEAN mRNA 529087 543822 0.928882 + . ID=CGI_10023906; scaffold48 WUBlastX DNA_TcMar-Tc2 530580 531206 312 + . . scaffold48 GLEAN mRNA 529087 543822 0.928882 + . ID=CGI_10023906; scaffold41660 WUBlastX LINE_L1-Tx1 113124 113543 77 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold1730 WUBlastX LINE_R2-Hero 289684 290892 125 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_R2-Hero 600782 601990 125 + . . scaffold1788 GLEAN mRNA 585785 601075 0.975766 + . ID=CGI_10019941; scaffold577 WUBlastX RC_Helitron 105885 106835 542 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L1 540483 541922 64 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-BovB 1167188 1167388 113 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-BovB 1167362 1167874 113 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_RTE-X 442069 442731 108 + . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LTR_Gypsy 89029 89739 166 - . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 7818 7916 26 + . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LTR_Gypsy 94632 94850 25 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_DIRS 41879 42643 279 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_DIRS 42935 43336 143 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX DNA_hAT-Tip100 112931 113353 73 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX DNA_hAT-Tip100 113356 113916 328 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 63392 63904 503 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold1850 WUBlastX LTR_Gypsy 234564 234866 161 + . . . . . -1 -1 -1 . . . C30694 WUBlastX LTR_Gypsy 6163 6483 21 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_Ngaro 197525 197824 204 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 197845 198120 84 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1009 WUBlastX LINE_RTE-BovB 813560 814081 253 - . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_RTE-X 98875 99483 293 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold1424 WUBlastX LTR_Gypsy 25105 25890 124 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_L1-Tx1 99827 100378 246 + . . scaffold42656 GLEAN mRNA 97324 103656 1 - . ID=CGI_10007415; scaffold32356 WUBlastX LTR_Pao 4202 4318 52 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy 57903 58325 155 - . . . . . -1 -1 -1 . . . C32054 WUBlastX LTR_Gypsy 963 2192 560 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_IS4EU 231562 232230 273 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_IS4EU 232245 232541 158 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX DNA_TcMar-Marin 363724 364374 345 - . . . . . -1 -1 -1 . . . scaffold1881 WUBlastX LINE_RTE-X 136987 139644 297 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_PiggyBac 611236 611547 174 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_PiggyBac 612187 612618 212 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Sola 218032 219261 337 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX DNA_TcMar-Tc1 396242 396808 210 + . . scaffold942 GLEAN mRNA 390660 406366 0.734087 - . ID=CGI_10019170; scaffold654 WUBlastX DNA_TcMar-Tc1 78891 79226 52 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_TcMar-Tc1 79228 79443 148 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_TcMar-Tc1 79479 79790 184 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 61263 62333 557 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Gypsy 227496 227855 201 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 513620 513793 79 - . . . . . -1 -1 -1 . . . C30752 WUBlastX LINE_RTE-X 669 1229 272 - . . . . . -1 -1 -1 . . . C30752 WUBlastX LINE_RTE-X 2215 2331 71 - . . . . . -1 -1 -1 . . . C30752 WUBlastX LINE_RTE-X 2337 2768 92 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 424662 424796 63 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold1232 WUBlastX LINE_CR1-L2 403844 404065 40 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_CR1 673294 673500 72 - . . scaffold6 GLEAN mRNA 669450 677435 1 + . ID=CGI_10022331; scaffold1703 WUBlastX DNA_IS4EU 306364 306867 188 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_IS4EU 307042 307800 295 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_L2 468039 468224 46 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-X 800795 801067 29 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_RTE-X 359916 360191 83 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LINE_RTE-X 13547 14914 401 - . . scaffold1166 GLEAN mRNA 4220 15993 0.883594 + . ID=CGI_10006284; scaffold292 WUBlastX LINE_L1-Tx1 7438 8094 121 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold142 WUBlastX LTR_Pao 1229869 1230300 56 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 350536 350853 197 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 350850 351440 265 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Pao 22714 23796 512 - . . . . . -1 -1 -1 . . . scaffold1672 WUBlastX LTR_DIRS 60296 61171 550 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold804 WUBlastX LTR_Gypsy 178391 178666 43 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy 178693 178851 54 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold471 WUBlastX DNA_IS4EU 324320 324526 52 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_IS4EU 325164 326165 445 + . . scaffold471 GLEAN mRNA 325188 326174 0.636168 + . ID=CGI_10027009; scaffold950 WUBlastX LINE_L2 390733 391149 196 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold334 WUBlastX LINE_L1-Tx1 1046169 1046279 65 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1-Tx1 1046546 1048225 332 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1-Tx1 1049133 1049228 25 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold1449 WUBlastX LINE_RTE-X 66909 67130 113 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 407907 408797 406 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold1780 WUBlastX DNA_TcMar-Tc1 219379 219855 302 - . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX DNA_TcMar-Tc1 219854 220255 118 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX DNA_TcMar-Tc1 115274 116233 407 - . . . . . -1 -1 -1 . . . C29558 WUBlastX LTR_Gypsy 6382 6600 136 - . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1-Tx1 23999 24115 57 + . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1-Tx1 25723 26187 34 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 181559 181663 106 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_L2 89060 89947 97 - . . . . . -1 -1 -1 . . . scaffold64 WUBlastX DNA_Harbinger 117085 117219 113 + . . . . . -1 -1 -1 . . . scaffold64 WUBlastX DNA_Harbinger 117246 117416 174 + . . . . . -1 -1 -1 . . . scaffold64 WUBlastX DNA_Harbinger 117687 118163 304 + . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX LINE_L1 31299 32711 270 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-BovB 369286 369567 191 + . . . . . -1 -1 -1 . . . scaffold366 WUBlastX LINE_RTE-X 101944 102837 535 + . . . . . -1 -1 -1 . . . C29786 WUBlastX LINE_RTE-X 5964 7034 566 + . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LINE_RTE-X 42452 43768 448 - . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LINE_RTE-X 51154 51837 180 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_TcMar-Tc1 349253 349756 152 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_TcMar-Tc1 350032 350244 151 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 309223 309732 89 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 316589 317098 89 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_Penelope 504836 506371 463 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 58932 59579 217 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-X 57338 57643 122 + . . . . . -1 -1 -1 . . . scaffold910 WUBlastX DNA_TcMar-Tc1 27835 28506 245 + . . . . . -1 -1 -1 . . . scaffold910 WUBlastX DNA_TcMar-Tc1 28529 28834 198 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 464138 464590 124 + . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LTR_Gypsy 79931 80020 36 - . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX LTR_Gypsy 14630 15463 50 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold1881 WUBlastX LINE_RTE-X 101865 103052 516 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 11374 12087 82 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LTR_Pao 37 1437 559 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1245872 1246876 374 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1246885 1247457 130 + . . . . . -1 -1 -1 . . . scaffold564 WUBlastX LINE_CR1-L2 223285 223434 65 + . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_CR1 488728 489024 161 - . . . . . -1 -1 -1 . . . C34856 WUBlastX LTR_Gypsy 9109 9402 129 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold86 WUBlastX LINE_L1-Tx1 705303 705476 29 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_RTE-BovB 412934 413638 403 + . . scaffold1671 GLEAN mRNA 411663 422714 0.51142 + . ID=CGI_10015159; scaffold1671 WUBlastX LINE_RTE-BovB 413640 413975 204 + . . scaffold1671 GLEAN mRNA 411663 422714 0.51142 + . ID=CGI_10015159; scaffold1053 WUBlastX LINE_RTE-BovB 198701 199735 449 + . . . . . -1 -1 -1 . . . scaffold371 WUBlastX LINE_RTE-X 38186 38455 25 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_RTE-X 243749 245176 499 - . . scaffold43836 GLEAN mRNA 233435 246233 0.999128 + . ID=CGI_10013061; scaffold43836 WUBlastX LINE_RTE-X 243749 245176 499 - . . scaffold43836 GLEAN mRNA 242579 251086 0.650911 - . ID=CGI_10013062; scaffold42618 WUBlastX LTR_Gypsy 93852 94094 25 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX DNA_IS4EU 216286 216573 33 - . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold210 WUBlastX LINE_L2 438859 439737 326 - . . scaffold210 GLEAN mRNA 426681 440258 0.999993 - . ID=CGI_10015907; scaffold210 WUBlastX LINE_L2 439748 440077 178 - . . scaffold210 GLEAN mRNA 426681 440258 0.999993 - . ID=CGI_10015907; scaffold87 WUBlastX LTR_Gypsy 130824 131378 260 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LINE_L1 4956 5477 116 - . . . . . -1 -1 -1 . . . scaffold1592 WUBlastX DNA_TcMar-Tc1 92285 93280 483 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LTR_DIRS 199541 200509 455 + . . . . . -1 -1 -1 . . . scaffold41588 WUBlastX LINE_L1-Tx1 102741 102788 45 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 73548 74027 51 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1-Tx1 88441 89229 453 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1-Tx1 89265 90290 28 + . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LTR_Gypsy 352783 352893 28 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_RTE-X 440923 441660 87 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 354926 355447 303 + . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LTR_DIRS 83179 84090 547 + . . . . . -1 -1 -1 . . . scaffold43108 WUBlastX LTR_Gypsy 124100 125035 684 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_IS4EU 296059 296208 47 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_IS4EU 296973 297047 40 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_IS4EU 297333 297500 51 - . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LINE_RTE-X 34189 34854 91 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 264677 265531 129 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 266297 266479 123 - . . . . . -1 -1 -1 . . . scaffold38934 WUBlastX DNA_Kolobok 48000 48323 250 - . . . . . -1 -1 -1 . . . scaffold38934 WUBlastX DNA_Kolobok 49510 49569 20 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_DIRS 632675 632938 183 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_PiggyBac 364207 365865 664 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 548389 548505 32 - . . . . . -1 -1 -1 . . . C31156 WUBlastX DNA_hAT-Ac 278 1606 612 - . . . . . -1 -1 -1 . . . scaffold39598 WUBlastX DNA_Harbinger 32435 32857 325 - . . . . . -1 -1 -1 . . . scaffold39598 WUBlastX DNA_Harbinger 32854 33321 300 - . . . . . -1 -1 -1 . . . scaffold38934 WUBlastX DNA_Kolobok 48000 48419 221 - . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LINE_CR1-L2 284111 284974 564 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 586832 587395 299 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 587377 587826 210 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_RTE-X 711089 712579 557 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Sola 950429 950758 170 + . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LINE_L1-Tx1 53823 54656 170 - . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LINE_L1-Tx1 55676 56332 161 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy-Cigr 1141713 1142846 221 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_CR1-L2 524392 524796 143 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_IS4EU 396918 397139 139 - . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_IS4EU 397357 398028 395 - . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_IS4EU 398295 398429 45 - . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold86 WUBlastX DNA_IS4EU 226174 226395 139 - . . scaffold86 GLEAN mRNA 226150 228665 0.977065 - . ID=CGI_10028143; scaffold86 WUBlastX DNA_IS4EU 226613 227284 397 - . . scaffold86 GLEAN mRNA 226150 228665 0.977065 - . ID=CGI_10028143; scaffold86 WUBlastX DNA_IS4EU 227551 227685 45 - . . scaffold86 GLEAN mRNA 226150 228665 0.977065 - . ID=CGI_10028143; scaffold57 WUBlastX LINE_L1 547367 548209 171 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_RTE-X 439117 439731 96 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_RTE-X 441660 441878 139 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_RTE-X 441872 442087 85 + . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LINE_RTE-BovB 61564 61815 174 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 61893 62288 136 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold43136 WUBlastX LINE_L1-Tx1 169790 170173 248 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L2 143681 144103 96 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L2 144740 145036 154 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L2 145348 145731 165 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L2 145694 146263 173 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_RTE-X 276165 277883 497 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 181148 182155 751 - . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LTR_Gypsy 67330 67506 61 - . . scaffold1096 GLEAN mRNA 61473 82912 0.788854 + . ID=CGI_10006453; scaffold43576 WUBlastX LINE_RTE-X 245768 247105 626 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L1-Tx1 909183 909275 32 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LINE_L1-Tx1 5504 6268 290 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LINE_L1-Tx1 6243 6470 47 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L1 335259 335516 195 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Maverick 352433 352573 84 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_DIRS 33427 34536 128 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_DIRS 34515 35096 375 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_DIRS 35066 35629 154 - . . . . . -1 -1 -1 . . . scaffold35180 WUBlastX LINE_L1-Tx1 18335 19555 334 - . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold38378 WUBlastX LINE_L1-Tx1 50821 51420 104 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Ngaro 271880 272278 185 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 100185 100442 199 + . . . . . -1 -1 -1 . . . C25486 WUBlastX LTR_Gypsy 2181 2315 22 - . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX LTR_Gypsy 15562 15606 20 + . . . . . -1 -1 -1 . . . scaffold42566 WUBlastX LINE_RTE-BovB 39623 40021 72 - . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 36607 37104 310 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LTR_DIRS 160660 161091 222 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LTR_DIRS 161193 162947 455 - . . . . . -1 -1 -1 . . . scaffold932 WUBlastX LTR_DIRS 41943 43706 596 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 11854 12444 183 - . . . . . -1 -1 -1 . . . scaffold752 WUBlastX LTR_Gypsy 228201 228611 215 - . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_RTE-BovB 441214 441987 333 - . . scaffold381 GLEAN mRNA 430162 460289 0.970742 - . ID=CGI_10017566; scaffold381 WUBlastX LINE_RTE-BovB 441996 442313 373 - . . scaffold381 GLEAN mRNA 430162 460289 0.970742 - . ID=CGI_10017566; scaffold630 WUBlastX LINE_L1 216952 219537 279 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-X 57338 57763 98 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LTR_Gypsy 29708 30640 662 + . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LTR_Gypsy 140932 140991 20 + . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LTR_Gypsy 30808 31656 233 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LTR_DIRS 52885 53400 82 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LTR_DIRS 53676 53921 182 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LTR_DIRS 53947 54519 262 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LTR_DIRS 54804 55196 154 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LINE_L1-Tx1 3993 4448 101 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy 116337 116642 52 + . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 153077 153229 52 + . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX LTR_Gypsy 90516 90773 175 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy-Cigr 225978 226751 373 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Ngaro 117945 119357 710 + . . scaffold113 GLEAN mRNA 112752 117970 0.458528 + . ID=CGI_10021286; scaffold301 WUBlastX LINE_RTE-X 213441 214832 663 - . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LTR_Ngaro 67868 68119 135 + . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LTR_Ngaro 68122 68829 501 + . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Pao 65089 65127 25 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_Gypsy 133394 133951 28 + . . . . . -1 -1 -1 . . . scaffold42060 WUBlastX LINE_RTE-X 73819 75351 474 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 474746 475111 25 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold212 WUBlastX LTR_Pao 2461 3354 818 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_DIRS 258907 260229 741 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold393 WUBlastX LINE_RTE-X 1041469 1041978 193 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold574 WUBlastX LINE_RTE-X 35875 36468 175 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Maverick 353851 354366 107 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L1-Tx1 236103 236444 41 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L2 22263 22700 274 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L2 22768 23499 102 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L2 23528 24052 239 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 10957 11481 257 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Gypsy 192658 193503 495 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold721 WUBlastX LINE_RTE-X 157564 158430 277 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-X 159502 159957 70 - . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy-Cigr 19385 19843 283 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_CR1-L2 410745 411002 96 - . . . . . -1 -1 -1 . . . scaffold37092 WUBlastX LINE_L1-Tx1 28279 29064 249 - . . . . . -1 -1 -1 . . . scaffold37092 WUBlastX LINE_L1-Tx1 28970 29551 324 - . . . . . -1 -1 -1 . . . scaffold37092 WUBlastX LINE_L1-Tx1 29744 30010 99 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 21581 21880 178 + . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LINE_RTE-X 15063 16472 486 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Ngaro 506005 506613 302 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_DIRS 34563 35552 820 - . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_L1-Tx1 12156 14087 541 - . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX DNA_hAT 10945 11100 131 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold40150 WUBlastX LINE_L2 70302 71486 478 - . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_Gypsy 12005 12469 124 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L1-Tx1 451946 453664 633 + . . scaffold1021 GLEAN mRNA 448242 473584 0.324995 - . ID=CGI_10022500; scaffold542 WUBlastX LTR_Gypsy-Cigr 351264 351485 84 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LINE_L2 157826 158848 771 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LTR_Ngaro 270763 272100 765 + . . scaffold71 GLEAN mRNA 268268 281594 0.588785 + . ID=CGI_10015059; scaffold1758 WUBlastX LTR_Ngaro 126270 127607 765 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-X 349302 351218 647 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_RTE-X 646701 648317 688 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Sola 1417896 1419101 818 + . . . . . -1 -1 -1 . . . scaffold1261 WUBlastX LINE_L1-Tx1 22600 24627 414 - . . . . . -1 -1 -1 . . . scaffold38152 WUBlastX LTR_Gypsy 49997 50368 370 - . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 83101 83523 92 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 85581 85814 46 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 87178 87468 175 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-BovB 40150 40449 85 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1 74765 75895 269 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold192 WUBlastX LTR_Gypsy 714263 715123 504 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Gypsy 1174798 1175271 350 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_RTE-X 717147 717479 84 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_RTE-X 142257 142385 53 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-BovB 10702 11316 305 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-BovB 11436 11939 361 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-BovB 12688 12924 145 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-BovB 12927 13010 31 - . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX DNA_Zator 22328 22483 61 - . . scaffold1875 GLEAN mRNA 22003 31388 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 22328 22483 61 - . . scaffold1875 GLEAN mRNA 22319 22768 1 - . ID=CGI_10006625; scaffold1875 WUBlastX DNA_Zator 22658 22921 67 - . . scaffold1875 GLEAN mRNA 22003 31388 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 22658 22921 67 - . . scaffold1875 GLEAN mRNA 22319 22768 1 - . ID=CGI_10006625; scaffold1875 WUBlastX DNA_Zator 23429 23635 57 - . . scaffold1875 GLEAN mRNA 22003 31388 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 23429 23635 57 - . . scaffold1875 GLEAN mRNA 23363 24929 1 - . ID=CGI_10006626; scaffold1875 WUBlastX DNA_Zator 23709 25169 676 - . . scaffold1875 GLEAN mRNA 22003 31388 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 23709 25169 676 - . . scaffold1875 GLEAN mRNA 23363 24929 1 - . ID=CGI_10006626; scaffold38122 WUBlastX LTR_Pao 48519 49772 299 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L1-Tx1 2098 2526 226 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L1-Tx1 2537 3190 502 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-X 57760 58071 70 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Sola 635126 636838 759 - . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold926 WUBlastX DNA_Sola 203177 203488 115 + . . . . . -1 -1 -1 . . . scaffold458 WUBlastX DNA_Sola 61876 62235 67 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX DNA_TcMar-Tc2 14942 15181 166 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LINE_L1-Tx1 153209 154123 303 - . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LTR_Gypsy-Cigr 254409 255011 59 - . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LTR_Gypsy-Cigr 255124 255624 364 - . . . . . -1 -1 -1 . . . scaffold41896 WUBlastX LINE_L2 30372 30614 174 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 693780 694319 282 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 386889 388007 919 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LTR_Gypsy 38818 40419 906 + . . . . . -1 -1 -1 . . . scaffold42030 WUBlastX LTR_DIRS 15917 17002 448 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Ngaro 615980 616237 152 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Ngaro 616306 617175 595 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 75953 76456 27 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold53 WUBlastX DNA_TcMar-Fot1 1003789 1004352 365 + . . scaffold53 GLEAN mRNA 983465 1007230 0.466135 - . ID=CGI_10026695; scaffold1898 WUBlastX LINE_RTE-X 164966 166609 755 - . . . . . -1 -1 -1 . . . scaffold43786 WUBlastX LINE_L1-Tx1 249246 249443 123 - . . scaffold43786 GLEAN mRNA 234476 275282 0.999342 - . ID=CGI_10012356; scaffold43150 WUBlastX DNA_Sola 55641 56072 165 - . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_L2 165817 167211 831 + . . scaffold381 GLEAN mRNA 121685 178510 0.998567 - . ID=CGI_10017555; C27412 WUBlastX LINE_CR1-L2 1454 3262 796 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Pao 551934 552032 21 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_CR1 277196 277261 20 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy-Cigr 183421 183822 119 + . . . . . -1 -1 -1 . . . scaffold33958 WUBlastX LTR_Gypsy 9367 13812 690 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_Penelope 206759 207973 770 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_Penelope 207972 208625 35 - . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX LINE_Penelope 44612 44851 107 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-X 450453 452798 669 - . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; C32536 WUBlastX LINE_RTE-X 1751 2125 71 + . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy-Cigr 90260 90619 149 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy 564921 564959 20 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1-Tx1 153538 155166 493 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1-Tx1 155581 155877 304 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_TcMar-Pogo 70210 70419 63 - . . . . . -1 -1 -1 . . . scaffold35014 WUBlastX DNA_PiggyBac 13970 14110 65 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold852 WUBlastX DNA_Merlin 121898 122167 47 + . . scaffold852 GLEAN mRNA 121104 128274 1 + . ID=CGI_10012039; scaffold1836 WUBlastX LTR_Gypsy 715534 715698 79 + . . scaffold1836 GLEAN mRNA 712795 721764 0.843575 + . ID=CGI_10026300; scaffold896 WUBlastX LINE_L1 247797 247934 36 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold556 WUBlastX LINE_RTE-RTE 111845 112078 41 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LTR_Copia 56032 56484 76 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Copia 175750 175944 37 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; C35760 WUBlastX LTR_Copia 22274 22390 22 - . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Copia 106284 106352 20 + . . . . . -1 -1 -1 . . . C26472 WUBlastX LTR_Pao 173 730 39 - . . C26472 GLEAN mRNA 44 535 0.999372 - . ID=CGI_10000305; scaffold35438 WUBlastX LTR_Pao 22458 23060 50 + . . scaffold35438 GLEAN mRNA 22653 23117 0.996819 + . ID=CGI_10001515; scaffold1560 WUBlastX LINE_CR1-L2 82961 83035 50 - . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX LINE_CR1-L2 97458 97673 26 + . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX LINE_CR1-L2 97645 97800 28 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_L2 34940 35041 25 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L2 174847 175296 21 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold1690 WUBlastX LINE_L2 2294 2416 27 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LINE_CR1 66356 66496 60 - . . . . . -1 -1 -1 . . . scaffold42208 WUBlastX LINE_CR1-L2 42531 42701 50 + . . scaffold42208 GLEAN mRNA 40222 44314 0.99733 - . ID=CGI_10006350; scaffold59 WUBlastX LINE_CR1-L2 211708 212217 39 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LINE_CR1-L2 356036 356281 39 - . . scaffold1865 GLEAN mRNA 344097 356570 0.999624 + . ID=CGI_10013550; scaffold43782 WUBlastX LINE_L2 289555 289821 40 + . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX LINE_L2 39319 39507 61 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L2 433018 433716 45 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_L2 106224 106556 53 + . . scaffold541 GLEAN mRNA 106056 107192 0.777728 + . ID=CGI_10022378; scaffold586 WUBlastX LINE_L2 2691 3023 53 + . . . . . -1 -1 -1 . . . C29506 WUBlastX LINE_L2 6214 6546 55 - . . . . . -1 -1 -1 . . . scaffold1126 WUBlastX LTR_Gypsy 2863 2913 33 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Gypsy 50035 50535 56 - . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LTR_Gypsy 102241 102591 82 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Gypsy 428801 428947 74 - . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LTR_ERV1 37418 37507 31 + . . scaffold1084 GLEAN mRNA 31266 40802 0.801676 + . ID=CGI_10010075; scaffold72 WUBlastX LTR_Gypsy 359186 359560 69 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 732071 732259 58 - . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold145 WUBlastX LTR_Ngaro 1052761 1053060 48 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LTR_DIRS 99315 99620 57 + . . . . . -1 -1 -1 . . . scaffold36790 WUBlastX LTR_Ngaro 25776 25859 28 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold880 WUBlastX DNA_Crypton 529873 530130 96 + . . scaffold880 GLEAN mRNA 522974 529941 0.988013 + . ID=CGI_10022199; scaffold622 WUBlastX DNA_Crypton 309060 309362 69 + . . scaffold622 GLEAN mRNA 308008 319722 0.586807 - . ID=CGI_10018209; scaffold392 WUBlastX LINE_L2 422645 422854 64 + . . scaffold392 GLEAN mRNA 419040 422893 0.701545 + . ID=CGI_10024216; scaffold1561 WUBlastX LTR_Ngaro 14644 14919 83 + . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold41304 WUBlastX LTR_Ngaro 105316 105522 45 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_Jockey 211142 211264 22 - . . . . . -1 -1 -1 . . . scaffold35986 WUBlastX LTR_Gypsy 12984 13121 95 + . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold1149 WUBlastX LTR_Gypsy 763111 763305 22 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 501291 501518 54 - . . scaffold363 GLEAN mRNA 500751 501623 1 - . ID=CGI_10019310; scaffold36092 WUBlastX DNA_Harbinger 19472 19717 66 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Harbinger 5079 5474 65 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 129619 129813 76 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129619 129813 76 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; C27850 WUBlastX DNA_Kolobok-IS4 277 786 64 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_Kolobok-IS4 324320 324493 29 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_Kolobok-IS4 325142 325267 29 - . . . . . -1 -1 -1 . . . scaffold66 WUBlastX DNA_IS4EU 112338 112442 48 + . . scaffold66 GLEAN mRNA 105673 117401 0.445669 + . ID=CGI_10006192; scaffold66 WUBlastX DNA_IS4EU 112472 112600 27 + . . scaffold66 GLEAN mRNA 105673 117401 0.445669 + . ID=CGI_10006192; scaffold271 WUBlastX DNA_IS4EU 431254 431331 51 - . . scaffold271 GLEAN mRNA 431230 438349 1 - . ID=CGI_10024477; scaffold392 WUBlastX LTR_ERVK 125517 125780 73 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_ERV1 145961 146035 24 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_L1-Tx1 699409 699846 42 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold40194 WUBlastX LINE_Jockey 52850 52984 72 - . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX DNA_Kolobok 113909 114136 23 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1 673800 674537 31 - . . scaffold1009 GLEAN mRNA 673569 674573 0.999984 - . ID=CGI_10028748; scaffold85 WUBlastX DNA_Kolobok-Hyd 390273 390677 28 + . . scaffold85 GLEAN mRNA 390093 393777 0.490241 + . ID=CGI_10020705; scaffold1448 WUBlastX LINE_L1 265951 266013 21 - . . . . . -1 -1 -1 . . . scaffold39352 WUBlastX LINE_L1 31236 31925 24 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1 9734 9886 27 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_Penelope 280391 280528 33 - . . scaffold502 GLEAN mRNA 265921 292012 0.339102 + . ID=CGI_10024318; scaffold1703 WUBlastX LINE_Penelope 175951 176232 76 + . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LINE_Penelope 36559 36729 28 + . . . . . -1 -1 -1 . . . C29498 WUBlastX LTR_Pao 4718 5440 63 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_Penelope 396813 396974 55 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_Penelope 24125 24382 65 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LINE_Penelope 60369 60704 26 + . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX LTR_ERV1 10539 10859 73 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX DNA_TcMar-Tc1 85273 85344 26 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L2 171652 171858 34 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_L2 84623 84868 34 - . . scaffold1554 GLEAN mRNA 84456 84665 0.999372 - . ID=CGI_10017358; scaffold987 WUBlastX LINE_L1 76024 76305 27 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold1123 WUBlastX LINE_Penelope 99027 99185 40 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_Penelope 1136669 1137073 32 + . . scaffold501 GLEAN mRNA 1134633 1191403 0.395005 - . ID=CGI_10027545; scaffold42896 WUBlastX LINE_RTE-X 9075 9242 20 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_RTE-X 9904 10029 51 - . . . . . -1 -1 -1 . . . scaffold43616 WUBlastX LINE_RTE-X 168829 169167 37 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 38192 38419 71 - . . scaffold544 GLEAN mRNA 36952 44048 1 + . ID=CGI_10022544; scaffold271 WUBlastX LINE_RTE-X 645585 645791 37 - . . . . . -1 -1 -1 . . . scaffold696 WUBlastX LINE_RTE-X 20307 20471 50 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_RTE-X 35510 35872 33 - . . . . . -1 -1 -1 . . . scaffold40950 WUBlastX LINE_RTE-X 64204 64323 80 + . . scaffold40950 GLEAN mRNA 45067 69137 1 - . ID=CGI_10004590; scaffold43136 WUBlastX LINE_RTE-X 78371 78601 31 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 475887 476081 69 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LINE_RTE-X 50493 50684 40 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_RTE-X 687339 687758 21 - . . . . . -1 -1 -1 . . . scaffold37554 WUBlastX LINE_RTE-X 364 474 25 + . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_RTE-BovB 352388 352588 72 - . . . . . -1 -1 -1 . . . C885 WUBlastX LINE_RTE-BovB 2 103 63 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Maverick 159557 160183 45 + . . . . . -1 -1 -1 . . . scaffold34144 WUBlastX DNA_Maverick 754 924 78 - . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_RTE-X 235492 235758 45 - . . . . . -1 -1 -1 . . . scaffold893 WUBlastX LINE_RTE-X 64571 64648 20 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_PiggyBac 811152 811328 87 + . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX DNA_TcMar-Tc1 32473 32661 30 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_hAT-Tip100 723687 723902 67 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold37472 WUBlastX LINE_CR1 29614 29694 56 + . . scaffold37472 GLEAN mRNA 1629 29724 0.999786 + . ID=CGI_10002390; scaffold40156 WUBlastX LINE_Rex-Babar 19341 19532 43 + . . . . . -1 -1 -1 . . . scaffold38382 WUBlastX LINE_CR1 20062 20190 47 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_CR1 179749 179910 33 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_CR1 68037 68072 29 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_CR1 20329 20493 35 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold352 WUBlastX LINE_CR1-L2 156766 156888 23 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LINE_CR1-L2 157774 157926 61 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold170 WUBlastX LTR_Copia 154279 154821 82 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Copia 191408 191605 22 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L1 217162 217428 91 - . . scaffold1352 GLEAN mRNA 212932 230879 0.392918 - . ID=CGI_10018413; scaffold146 WUBlastX LINE_Jockey 9450 10013 78 - . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LTR_Pao 44368 44592 23 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LTR_Pao 44668 44784 60 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_L2 1052980 1053387 33 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold257 WUBlastX LINE_L2 878238 878807 52 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_CR1 325659 325952 71 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_DIRS 631734 631880 73 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 933573 934001 31 - . . . . . -1 -1 -1 . . . scaffold1745 WUBlastX LTR_Ngaro 118337 118597 83 + . . scaffold1745 GLEAN mRNA 107455 123228 0.998783 - . ID=CGI_10005406; scaffold1132 WUBlastX LINE_L2 421289 421456 83 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold950 WUBlastX LINE_L2 235428 235466 29 - . . scaffold950 GLEAN mRNA 224684 252187 0.638871 - . ID=CGI_10022925; scaffold867 WUBlastX LTR_Gypsy 859897 860193 58 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Ngaro 533032 533082 22 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 133493 134041 29 - . . . . . -1 -1 -1 . . . scaffold1419 WUBlastX LTR_Gypsy 12219 12302 65 - . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LTR_Gypsy 82647 82745 20 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1147045 1147185 69 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Lenti 105110 105214 28 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 258132 258368 28 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold695 WUBlastX LTR_Gypsy 364460 364909 85 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 80244 80543 54 - . . scaffold143 GLEAN mRNA 80214 80516 0.776794 - . ID=CGI_10010009; scaffold396 WUBlastX LTR_Gypsy 347712 347792 20 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 270157 270309 41 - . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LTR_Gypsy 170081 170527 103 - . . . . . -1 -1 -1 . . . C22996 WUBlastX LTR_Gypsy 17 472 51 - . . . . . -1 -1 -1 . . . scaffold36732 WUBlastX DNA_Kolobok 4554 5204 63 - . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX DNA_TcMar 130794 131042 32 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_Harbinger 160564 160740 77 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_hAT-Tip100 202367 202702 71 + . . . . . -1 -1 -1 . . . scaffold35 WUBlastX DNA_hAT-Ac 14312 14440 44 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_R2-Hero 723110 723217 72 + . . scaffold1710 GLEAN mRNA 716235 735298 0.587067 - . ID=CGI_10022373; C35532 WUBlastX RC_Helitron 4253 4651 77 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Harbinger 173664 173975 63 + . . . . . -1 -1 -1 . . . scaffold1641 WUBlastX LTR_Gypsy 233579 234082 70 - . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LTR_Gypsy 460779 461261 77 - . . . . . -1 -1 -1 . . . scaffold598 WUBlastX LTR_Gypsy 1349 2302 41 + . . scaffold598 GLEAN mRNA 1303 4771 0.992797 + . ID=CGI_10001778; scaffold963 WUBlastX LTR_Gypsy 289679 290632 41 - . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LTR_Gypsy 53949 54782 22 + . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy 20588 21100 68 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 436465 436755 86 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L2 615659 616156 61 + . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L2 44383 44757 43 - . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_L2 105705 106163 54 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX DNA_TcMar-Marin 87102 87482 68 + . . scaffold386 GLEAN mRNA 81379 108874 0.997229 - . ID=CGI_10012681; scaffold1036 WUBlastX DNA_MuDR 479252 479518 85 - . . scaffold1036 GLEAN mRNA 472347 489883 1 - . ID=CGI_10019970; scaffold37760 WUBlastX LTR_ERVK 15184 15237 23 + . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold35640 WUBlastX LINE_Penelope 11023 11274 75 + . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX LINE_Penelope 166900 167478 32 - . . scaffold1373 GLEAN mRNA 164407 174047 0.544675 - . ID=CGI_10007913; scaffold358 WUBlastX LINE_L1 79246 79734 48 - . . . . . -1 -1 -1 . . . scaffold35432 WUBlastX LINE_L1 73 216 26 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Kolobok 7997 8230 49 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold36598 WUBlastX DNA_IS4EU 11596 11931 85 + . . scaffold36598 GLEAN mRNA 10870 17380 0.999993 + . ID=CGI_10002012; scaffold38464 WUBlastX DNA_PiggyBac 52986 53378 89 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_RTE-X 813780 814136 60 + . . scaffold1154 GLEAN mRNA 811283 818578 1 - . ID=CGI_10026191; scaffold32 WUBlastX LINE_RTE-BovB 219218 219304 56 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-BovB 234389 234598 43 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-BovB 234873 235031 51 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LINE_RTE-X 112105 112320 72 - . . . . . -1 -1 -1 . . . scaffold929 WUBlastX LINE_RTE-X 7488 7769 42 - . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_RTE-X 18244 18480 63 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 50715 51032 32 + . . scaffold3 GLEAN mRNA 34173 61876 0.984416 - . ID=CGI_10027268; scaffold3 WUBlastX LINE_RTE-X 50715 51032 32 + . . scaffold3 GLEAN mRNA 47892 52805 0.999676 + . ID=CGI_10027269; C26070 WUBlastX LINE_RTE-X 169 420 67 + . . . . . -1 -1 -1 . . . scaffold837 WUBlastX LINE_RTE-X 81316 81612 63 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_RTE-X 170478 170804 32 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 619339 619596 71 + . . . . . -1 -1 -1 . . . scaffold311 WUBlastX LINE_RTE-X 6519 6938 79 - . . . . . -1 -1 -1 . . . scaffold31954 WUBlastX LINE_RTE-X 593 691 34 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_RTE-X 9138 9272 41 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_RTE-X 143042 143266 66 + . . scaffold1359 GLEAN mRNA 137228 157438 0.889848 - . ID=CGI_10013236; scaffold392 WUBlastX LINE_RTE-X 105097 105330 43 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_RTE-X 156106 156279 62 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 350139 350300 99 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LINE_RTE-X 356363 356590 25 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold1054 WUBlastX DNA_TcMar-Tigge 41562 42401 79 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 574867 575151 21 - . . . . . -1 -1 -1 . . . scaffold533 WUBlastX DNA_TcMar-Tc1 24946 25032 29 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_L1-Tx1 175921 176124 45 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L1-Tx1 309944 310030 66 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_L1-Tx1 450560 450796 58 + . . . . . -1 -1 -1 . . . scaffold888 WUBlastX LINE_L1-Tx1 101700 101918 54 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 98441 98563 39 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold169 WUBlastX LINE_L1-Tx1 457286 457579 63 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LINE_L1-Tx1 272085 272420 55 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Merlin 49826 50152 73 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 49826 50152 73 + . . scaffold39196 GLEAN mRNA 39677 52332 0.583111 + . ID=CGI_10003218; scaffold34580 WUBlastX LTR_Pao 15492 16136 50 - . . . . . -1 -1 -1 . . . scaffold36196 WUBlastX DNA_hAT-Tip100 23619 23672 22 + . . . . . -1 -1 -1 . . . scaffold41762 WUBlastX LINE_RTE-RTE 85912 86673 41 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_hAT 31801 32340 90 + . . scaffold222 GLEAN mRNA 28929 43685 0.659955 + . ID=CGI_10007121; scaffold35266 WUBlastX LTR_Copia 9418 9720 105 + . . scaffold35266 GLEAN mRNA 5619 15884 1 + . ID=CGI_10001434; scaffold385 WUBlastX LTR_Pao 188396 188629 42 + . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_CR1-L2 498955 499398 24 - . . . . . -1 -1 -1 . . . C30752 WUBlastX LINE_CR1-L2 6771 6854 28 + . . . . . -1 -1 -1 . . . scaffold258 WUBlastX LINE_CR1-L2 318282 318827 75 + . . scaffold258 GLEAN mRNA 316614 320715 1 + . ID=CGI_10020057; scaffold347 WUBlastX LINE_CR1 261341 261961 40 - . . scaffold347 GLEAN mRNA 231355 265361 0.350161 - . ID=CGI_10021787; scaffold1329 WUBlastX LINE_L2 197427 197789 54 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_L2 267415 267555 96 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_L2 124619 124924 63 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_L2 270952 271167 42 + . . scaffold507 GLEAN mRNA 254357 273838 0.999949 - . ID=CGI_10019093; scaffold308 WUBlastX LINE_L2 278640 278813 37 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_L2 114738 114917 24 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 204794 205009 81 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Gypsy 516915 517226 34 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LTR_Gypsy 273930 274247 87 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 214216 214326 37 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 56244 56690 51 - . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LTR_Gypsy 97448 97972 81 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold962 WUBlastX LTR_ERVL 17614 17850 59 + . . scaffold962 GLEAN mRNA 17446 17832 0.999586 + . ID=CGI_10027631; scaffold314 WUBlastX LTR_Gypsy 80862 81035 62 + . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_CR1 86457 86555 37 - . . scaffold41560 GLEAN mRNA 83554 88131 1 - . ID=CGI_10005282; scaffold1473 WUBlastX LINE_L2 17173 17445 81 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold329 WUBlastX LTR_Ngaro 110959 111126 38 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 70250 70363 27 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 337896 338360 29 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LTR_Gypsy 781080 781913 48 - . . scaffold271 GLEAN mRNA 780567 782249 0.988234 - . ID=CGI_10024495; scaffold1424 WUBlastX DNA_Harbinger 39891 40109 65 - . . . . . -1 -1 -1 . . . scaffold38900 WUBlastX DNA_Harbinger 18349 18528 55 - . . scaffold38900 GLEAN mRNA 4144 21771 0.999939 - . ID=CGI_10003039; scaffold1670 WUBlastX DNA_Harbinger 509316 509477 80 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_Harbinger 35115 35213 42 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_hAT-Tag1 91822 92319 29 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold38122 WUBlastX DNA_IS4EU 44745 45407 38 - . . . . . -1 -1 -1 . . . C35006 WUBlastX DNA_IS4EU 1627 1704 38 - . . . . . -1 -1 -1 . . . C35006 WUBlastX DNA_IS4EU 2385 2642 61 - . . C35006 GLEAN mRNA 2016 7654 0.999998 - . ID=CGI_10001396; scaffold1210 WUBlastX DNA_Kolobok 400875 401114 46 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX DNA_Kolobok 210279 210440 42 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX DNA_Kolobok 231620 231766 71 - . . scaffold236 GLEAN mRNA 231446 232793 0.958487 - . ID=CGI_10018140; scaffold816 WUBlastX LINE_L1-Tx1 168507 168626 22 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1 95759 96379 56 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 1098766 1098999 43 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_L1 526435 526656 36 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold41816 WUBlastX LINE_L1 88537 88686 101 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold593 WUBlastX LINE_Penelope 48247 48525 72 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_P 206296 206550 93 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 102973 103224 33 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_Penelope 211271 211723 57 + . . . . . -1 -1 -1 . . . C8377 WUBlastX LINE_Penelope 2 130 102 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_NOF 207819 208127 46 + . . . . . -1 -1 -1 . . . scaffold42788 WUBlastX DNA_TcMar-Tc1 67707 68066 83 + . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold672 WUBlastX DNA_TcMar-Fot1 18733 18987 53 + . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX DNA_TcMar-Pogo 350738 350986 104 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LINE_L2 223194 223745 47 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 243760 244101 43 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_ERV1 204828 205010 36 - . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LINE_CR1 160374 160580 33 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold42408 WUBlastX LINE_RTE-BovB 126833 127030 35 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_RTE-X 98276 98383 30 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_RTE-X 98551 98883 56 + . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LINE_RTE-X 169782 169820 30 - . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LINE_RTE-X 169912 170019 33 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_RTE-X 2804 3112 40 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 324762 325298 40 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 397661 397804 41 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold1460 WUBlastX LINE_RTE-BovB 6052 6144 32 + . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_RTE-RTE 162816 162920 22 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 676839 676937 54 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_RTE-BovB 240384 240656 89 + . . scaffold833 GLEAN mRNA 240516 240821 0.96892 + . ID=CGI_10016737; scaffold35994 WUBlastX DNA_Maverick 3543 3797 20 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX DNA_Maverick 3803 4312 26 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold40346 WUBlastX DNA_Maverick 82001 82201 32 + . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX DNA_MuDR 63398 63640 86 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold126 WUBlastX DNA_MuDR 579025 579267 86 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold33026 WUBlastX DNA_Sola 9258 9653 99 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 956451 956660 59 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 957526 957729 36 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold42896 WUBlastX LINE_RTE-X 10286 10393 20 - . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_L1-Tx1 30503 30853 25 + . . . . . -1 -1 -1 . . . scaffold1464 WUBlastX DNA_TcMar-Tc1 25099 25500 52 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_TcMar-Tc1 202052 202192 88 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Tc2 154541 154789 51 + . . scaffold43242 GLEAN mRNA 154565 157582 0.118333 + . ID=CGI_10009546; scaffold453 WUBlastX LINE_CR1-L2 314406 314495 25 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold743 WUBlastX LINE_CR1 111370 112017 55 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_L2 184450 184608 20 + . . . . . -1 -1 -1 . . . scaffold910 WUBlastX LINE_CR1-L2 21340 21660 52 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L2 1441478 1441621 35 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 82761 82955 39 + . . scaffold1093 GLEAN mRNA 77464 87990 0.558336 + . ID=CGI_10019787; scaffold1673 WUBlastX LINE_CR1-L2 306311 306592 58 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L2 113574 114182 85 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_CR1-L2 148494 148838 79 + . . . . . -1 -1 -1 . . . scaffold929 WUBlastX LINE_CR1-L2 124656 125306 26 + . . scaffold929 GLEAN mRNA 116400 138361 0.987262 + . ID=CGI_10006345; scaffold1436 WUBlastX LTR_Pao 129793 129960 111 + . . . . . -1 -1 -1 . . . C28030 WUBlastX LINE_L1 841 1026 65 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_hAT-Tip100 955127 955456 85 - . . . . . -1 -1 -1 . . . C30216 WUBlastX DNA_hAT-Tip100 3233 3562 90 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Gypsy 53645 53953 85 + . . . . . -1 -1 -1 . . . C4529 WUBlastX LTR_Pao 1 117 102 + . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LINE_CR1-L2 173894 174190 70 - . . . . . -1 -1 -1 . . . scaffold33618 WUBlastX LTR_DIRS 2649 3305 98 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1346582 1346668 31 + . . . . . -1 -1 -1 . . . scaffold35928 WUBlastX LTR_Ngaro 19684 20046 64 - . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX LTR_Ngaro 21498 22055 76 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_L2 93890 94135 44 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_L2 636620 636910 25 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L2 76260 76370 47 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 494361 494678 87 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LTR_Gypsy 33748 34350 94 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1370228 1370707 61 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy-Cigr 31041 31523 90 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_L2 701283 701417 29 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold1462 WUBlastX DNA_IS4EU 397216 397389 45 + . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_I 169489 170283 25 + . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LTR_Gypsy 5812 6393 90 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy 62610 62837 70 - . . . . . -1 -1 -1 . . . scaffold105 WUBlastX DNA_hAT-Ac 317526 317606 56 - . . scaffold105 GLEAN mRNA 316924 320165 1 + . ID=CGI_10015755; scaffold105 WUBlastX DNA_hAT-Ac 317633 317767 64 - . . scaffold105 GLEAN mRNA 316924 320165 1 + . ID=CGI_10015755; scaffold1671 WUBlastX RC_Helitron 4159 4872 22 + . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX DNA_Harbinger 69956 70168 90 + . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX LTR_Gypsy 182837 182986 20 + . . . . . -1 -1 -1 . . . scaffold1089 WUBlastX LINE_Penelope 64385 64486 25 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L2 1834601 1834651 24 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_L2 261492 261569 22 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold664 WUBlastX DNA_TcMar-Marin 656069 656146 58 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 656718 656783 36 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1456 WUBlastX DNA_TcMar-Fot1 97975 98511 69 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX DNA_TcMar-Fot1 211286 211669 76 + . . . . . -1 -1 -1 . . . C26486 WUBlastX LINE_Penelope 3499 3807 86 - . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LINE_Penelope 83851 84387 44 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L1-Tx1 256030 256272 84 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold789 WUBlastX LINE_L1 453845 453892 21 + . . scaffold789 GLEAN mRNA 449746 456527 1 + . ID=CGI_10017205; scaffold750 WUBlastX LINE_L1 710826 711227 76 + . . . . . -1 -1 -1 . . . scaffold40208 WUBlastX LINE_L1-Tx1 83545 83847 36 + . . scaffold40208 GLEAN mRNA 72712 87059 0.842413 + . ID=CGI_10003956; scaffold394 WUBlastX LINE_L1-Tx1 363432 363551 25 - . . . . . -1 -1 -1 . . . scaffold31230 WUBlastX LINE_L1 8044 8832 95 + . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LINE_L1 87696 88256 54 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold43302 WUBlastX LINE_L1-Tx1 218045 218377 87 - . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_RTE-BovB 1733 2065 93 + . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX LINE_R2-Hero 78072 78350 66 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX DNA_Maverick 98211 98288 34 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-BovB 311356 311694 99 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_RTE-BovB 97276 97551 55 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_RTE-BovB 865573 865809 82 - . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX LINE_RTE-BovB 129896 130306 62 + . . . . . -1 -1 -1 . . . scaffold1379 WUBlastX LINE_RTE-X 17603 17980 85 - . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LINE_RTE-X 140541 140783 66 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-X 96633 96881 77 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LINE_RTE-X 18603 18827 43 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX LINE_RTE-X 112508 112852 73 + . . scaffold1210 GLEAN mRNA 93719 132019 0.550359 - . ID=CGI_10014599; scaffold1028 WUBlastX LINE_RTE-X 42081 42257 39 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold57 WUBlastX LINE_RTE-X 552941 553450 90 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_RTE-X 68732 68932 75 - . . . . . -1 -1 -1 . . . scaffold564 WUBlastX LINE_RTE-X 254069 254257 75 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_RTE-X 747156 747437 72 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-X 192272 192703 34 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 559121 559276 78 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_RTE-X 42034 42345 68 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_RTE-X 208476 208631 78 + . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_RTE-X 54167 54457 108 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold40184 WUBlastX LINE_RTE-X 36296 36487 100 - . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_RTE-X 14948 15169 100 + . . . . . -1 -1 -1 . . . scaffold752 WUBlastX LINE_RTE-X 15848 16393 62 - . . scaffold752 GLEAN mRNA 9483 39806 0.831804 + . ID=CGI_10010038; scaffold563 WUBlastX DNA_TcMar-Marin 505578 505799 87 - . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold41730 WUBlastX DNA_TcMar-Marin 63594 63929 40 + . . . . . -1 -1 -1 . . . scaffold1784 WUBlastX LTR_DIRS 59171 59623 44 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_DIRS 83403 83693 55 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold43200 WUBlastX DNA_TcMar-Tc1 177498 177638 41 + . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX DNA_TcMar-Tc1 177644 177820 84 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX DNA_TcMar-Tc1 195295 195795 37 + . . . . . -1 -1 -1 . . . scaffold43522 WUBlastX LINE_L1-Tx1 8323 8772 34 + . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_L1-Tx1 17692 17949 44 - . . scaffold39804 GLEAN mRNA 15936 20719 1 + . ID=CGI_10003618; scaffold3 WUBlastX LINE_L1-Tx1 369630 370046 50 - . . scaffold3 GLEAN mRNA 362573 374344 0.984893 - . ID=CGI_10027291; scaffold1715 WUBlastX LINE_L2 582484 583062 97 + . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_hAT-Tip100 173997 174254 86 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_hAT 1350446 1350757 61 + . . . . . -1 -1 -1 . . . scaffold373 WUBlastX LTR_Gypsy 428 1636 39 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_CR1-L2 315121 315180 51 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1396 WUBlastX LINE_CR1-L2 39820 39903 45 + . . . . . -1 -1 -1 . . . scaffold39946 WUBlastX LINE_L2 48502 49332 42 + . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L2 11408 11653 99 - . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L2 281979 282545 82 - . . scaffold1337 GLEAN mRNA 281481 282728 0.999981 - . ID=CGI_10012842; scaffold457 WUBlastX LINE_L2 108637 108894 22 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LINE_L2 206806 206868 20 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold40366 WUBlastX LTR_Gypsy-Cigr 49828 50169 36 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 79327 79353 20 - . . . . . -1 -1 -1 . . . scaffold715 WUBlastX DNA_En-Spm 64248 64601 75 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 706745 707008 67 + . . . . . -1 -1 -1 . . . C30592 WUBlastX LINE_L2 3950 4408 66 + . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LINE_L2 161360 161767 82 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold1480 WUBlastX LINE_L2 121819 122202 70 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L2 1209765 1209902 62 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1066 WUBlastX LTR_Ngaro 179377 179772 55 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold1328 WUBlastX LTR_Ngaro 58721 58843 43 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Ngaro 54737 55063 24 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 55240 55485 71 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold707 WUBlastX DNA_Harbinger 20871 21170 107 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 605321 605917 68 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 107882 107926 23 + . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX RC_Helitron 80532 80747 50 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX RC_Helitron 151104 151562 85 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX DNA_Harbinger 372479 373117 91 + . . scaffold1863 GLEAN mRNA 370491 381418 0.892726 + . ID=CGI_10016696; scaffold38066 WUBlastX DNA_hAT-Tip100 11943 12032 25 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_IS4EU 303954 304109 27 - . . . . . -1 -1 -1 . . . scaffold32064 WUBlastX DNA_IS4EU 7586 7771 61 - . . . . . -1 -1 -1 . . . C35716 WUBlastX DNA_IS4EU 18280 18414 86 - . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX DNA_IS4EU 3239 4003 97 - . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_IS4EU 13178 13942 94 - . . scaffold1722 GLEAN mRNA 11939 32243 0.51382 - . ID=CGI_10014865; scaffold240 WUBlastX LINE_L1 25874 26104 67 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1 29015 29923 49 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_IS4EU 16342 16422 38 + . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_Kolobok 50788 50937 90 - . . . . . -1 -1 -1 . . . scaffold952 WUBlastX LINE_L1 23292 23495 58 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold1249 WUBlastX LINE_L1-Tx1 249390 249989 71 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_L1 186619 186900 29 + . . scaffold784 GLEAN mRNA 178600 195281 0.744931 - . ID=CGI_10024415; scaffold4 WUBlastX LINE_Penelope 280413 280691 84 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 43018 43356 96 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 1442705 1442944 102 - . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LINE_RTE-X 15138 15404 76 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_RTE-X 1041609 1041929 51 + . . . . . -1 -1 -1 . . . C29438 WUBlastX LINE_RTE-X 2525 2746 99 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold477 WUBlastX LINE_RTE-X 50767 50979 103 - . . scaffold477 GLEAN mRNA 46689 64755 0.855741 + . ID=CGI_10012309; scaffold481 WUBlastX LINE_RTE-X 1041675 1041908 67 + . . . . . -1 -1 -1 . . . C31572 WUBlastX LINE_RTE-X 7506 7988 65 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_RTE-X 290982 291188 84 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_RTE-X 206875 207042 117 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX DNA_Maverick 71402 71674 56 + . . . . . -1 -1 -1 . . . scaffold35014 WUBlastX DNA_PiggyBac 13162 13533 80 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold1024 WUBlastX DNA_PiggyBac 1080266 1080541 90 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold1093 WUBlastX DNA_hAT-Tip100 67684 68379 86 - . . . . . -1 -1 -1 . . . scaffold775 WUBlastX LINE_L1-Tx1 36606 36923 32 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 235674 235784 42 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 236706 236777 23 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX DNA_TcMar-Tc1 83401 83868 70 - . . scaffold890 GLEAN mRNA 81187 101968 1 - . ID=CGI_10014464; scaffold41762 WUBlastX DNA_TcMar-Tc1 19430 19864 62 - . . . . . -1 -1 -1 . . . scaffold907 WUBlastX LINE_CR1 5753 6334 75 + . . . . . -1 -1 -1 . . . scaffold34594 WUBlastX LINE_L2 6663 7262 80 - . . scaffold34594 GLEAN mRNA 5594 16260 0.992512 + . ID=CGI_10001317; scaffold1086 WUBlastX LINE_CR1 101911 102408 107 - . . scaffold1086 GLEAN mRNA 71811 104849 0.15447 + . ID=CGI_10021931; C31762 WUBlastX LINE_L2 2607 2822 144 - . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX LINE_L2 168080 168364 88 - . . . . . -1 -1 -1 . . . scaffold37500 WUBlastX LINE_CR1-L2 31402 31680 99 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold192 WUBlastX LINE_CR1-L2 1827 2171 94 - . . . . . -1 -1 -1 . . . scaffold42528 WUBlastX LINE_CR1-L2 132706 133209 55 - . . scaffold42528 GLEAN mRNA 99418 143145 0.451859 - . ID=CGI_10007209; scaffold150 WUBlastX LINE_CR1-L2 506416 506757 90 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_CR1-L2 50657 51028 83 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold43136 WUBlastX LINE_CR1-L2 148404 148877 74 + . . . . . -1 -1 -1 . . . scaffold686 WUBlastX LINE_CR1-L2 2521 2796 108 - . . scaffold686 GLEAN mRNA 377 5602 0.998023 - . ID=CGI_10004460; scaffold392 WUBlastX LINE_Penelope 480573 481142 98 - . . . . . -1 -1 -1 . . . scaffold35266 WUBlastX LTR_Copia 11224 11424 88 - . . scaffold35266 GLEAN mRNA 5619 15884 1 + . ID=CGI_10001434; scaffold35266 WUBlastX LTR_Copia 11769 12287 25 - . . scaffold35266 GLEAN mRNA 5619 15884 1 + . ID=CGI_10001434; scaffold117 WUBlastX LINE_CR1 53134 53238 53 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold504 WUBlastX LINE_L2 414429 414659 39 - . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_CR1 317666 317728 22 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX DNA_En-Spm 20895 21260 90 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 322025 322081 27 - . . . . . -1 -1 -1 . . . scaffold477 WUBlastX DNA_TcMar-Tc1 121486 121785 76 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1345023 1345289 84 + . . . . . -1 -1 -1 . . . scaffold42634 WUBlastX DNA_TcMar-Fot1 150064 150570 109 + . . . . . -1 -1 -1 . . . scaffold42836 WUBlastX LTR_Gypsy 107168 107269 25 + . . scaffold42836 GLEAN mRNA 101715 122664 0.986039 + . ID=CGI_10007860; C6241 WUBlastX LTR_Gypsy 2 127 123 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy-Cigr 9378 9719 113 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy-Cigr 133512 133997 48 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy-Cigr 134101 134247 62 - . . . . . -1 -1 -1 . . . scaffold32470 WUBlastX LTR_Gypsy 1135 1563 91 - . . scaffold32470 GLEAN mRNA 176 4292 1 + . ID=CGI_10000898; scaffold43008 WUBlastX LTR_Gypsy 44476 44751 100 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy 1231049 1231186 43 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_Kolobok-IS4 303927 304112 21 + . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX DNA_IS4EU 29976 30686 82 - . . . . . -1 -1 -1 . . . scaffold40100 WUBlastX DNA_IS4EU 6480 6644 115 + . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX DNA_IS4EU 92228 92689 94 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_I 646530 647321 68 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_Harbinger 72839 73216 112 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Helitron 251008 251556 116 - . . scaffold524 GLEAN mRNA 241978 255594 0.734579 - . ID=CGI_10016606; scaffold770 WUBlastX RC_Helitron 112682 112921 102 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Harbinger 137551 137862 111 - . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_Harbinger 202968 203078 54 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Gypsy 695090 695203 33 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 507230 508087 43 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold1439 WUBlastX LTR_Gypsy 88613 88843 50 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Kolobok 289749 289997 110 + . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold72 WUBlastX DNA_Kolobok 338234 338479 94 + . . . . . -1 -1 -1 . . . scaffold1669 WUBlastX DNA_Kolobok 9502 9792 111 + . . scaffold1669 GLEAN mRNA 1110 11588 0.999673 - . ID=CGI_10001412; scaffold1205 WUBlastX LINE_Penelope 40679 40822 65 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Penelope 179682 179945 54 - . . . . . -1 -1 -1 . . . scaffold43494 WUBlastX LINE_Penelope 23970 24395 91 - . . . . . -1 -1 -1 . . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6132 6365 75 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 461428 461646 129 + . . . . . -1 -1 -1 . . . C28620 WUBlastX LTR_Gypsy 5298 5510 128 + . . . . . -1 -1 -1 . . . scaffold993 WUBlastX LTR_Ngaro 88930 89154 106 - . . . . . -1 -1 -1 . . . C30864 WUBlastX LINE_L1-Tx1 3962 4228 39 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 8876 9100 50 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-X 39364 39495 34 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 459288 459482 67 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold1883 WUBlastX LINE_RTE-X 109014 109082 26 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-X 164936 165277 36 + . . scaffold980 GLEAN mRNA 163810 172327 0.499535 - . ID=CGI_10019213; scaffold370 WUBlastX LINE_RTE-X 731404 731703 92 + . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-X 240914 240976 35 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 1317809 1318285 115 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 367500 367682 30 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-X 266082 266357 66 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold1180 WUBlastX DNA_TcMar-Tc1 137325 137687 111 - . . . . . -1 -1 -1 . . . scaffold43494 WUBlastX DNA_TcMar-Tc1 76703 76804 24 - . . . . . -1 -1 -1 . . . C28456 WUBlastX DNA_TcMar-Tc1 2394 2573 45 - . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX LINE_L1-Tx1 76544 76879 93 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_PiggyBac 517369 517617 52 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_PiggyBac 37066 37302 76 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1-Tx1 837379 837612 62 + . . . . . -1 -1 -1 . . . scaffold952 WUBlastX LINE_L1-Tx1 23165 23206 22 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX LINE_L1-Tx1 23497 23778 61 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold43726 WUBlastX LINE_CR1 278425 278880 63 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Gypsy-Cigr 132367 132738 94 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Pao 163946 164467 23 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Pao 94438 94899 118 + . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_L2-Hydra 56631 57764 38 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_CR1 190587 190703 26 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_CR1 125371 125478 49 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 66308 66883 110 + . . . . . -1 -1 -1 . . . scaffold42836 WUBlastX LTR_Gypsy 161416 161508 21 + . . scaffold42836 GLEAN mRNA 143632 181424 1 + . ID=CGI_10007862; scaffold35406 WUBlastX LTR_Gypsy 9965 10636 112 - . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold39624 WUBlastX LTR_Ngaro 16642 16728 34 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_L2 360051 360518 103 - . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold1323 WUBlastX LTR_Ngaro 75513 75830 37 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX LTR_Ngaro 75844 76134 58 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold446 WUBlastX DNA_Kolobok 186844 187164 88 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX DNA_Kolobok 235871 236047 77 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold523 WUBlastX LTR_Gypsy 810 1082 133 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy 239899 240027 22 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold207 WUBlastX LTR_Gypsy 26318 26440 24 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Gypsy 443279 444310 65 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 113487 113642 71 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 234501 234800 126 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LTR_Gypsy 1980 2993 41 - . . . . . -1 -1 -1 . . . scaffold35694 WUBlastX LINE_R2-Hero 17861 18085 41 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX RC_Helitron 184250 184732 78 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_R2-Hero 572489 572731 87 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_Kolobok-IS4 300059 300256 54 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_Kolobok-IS4 301183 301629 65 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1 1078524 1078856 85 + . . scaffold337 GLEAN mRNA 1058886 1083021 0.758954 + . ID=CGI_10028091; scaffold37532 WUBlastX LINE_L1 2560 3414 80 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_L1 380772 381461 93 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; scaffold801 WUBlastX LTR_Ngaro 618370 618768 129 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_Jockey 1888 1941 27 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 613445 613846 42 - . . . . . -1 -1 -1 . . . scaffold31816 WUBlastX DNA_TcMar-Tc1 9903 10091 55 + . . . . . -1 -1 -1 . . . scaffold34016 WUBlastX LINE_Penelope 3285 3821 100 + . . scaffold34016 GLEAN mRNA 449 13407 0.445355 - . ID=CGI_10001181; scaffold444 WUBlastX LINE_Penelope 398216 398368 33 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LINE_Penelope 170609 170725 28 + . . scaffold240 GLEAN mRNA 169762 171676 1 + . ID=CGI_10007851; scaffold337 WUBlastX LINE_RTE-X 1090067 1090603 111 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_RTE-X 312345 312539 119 - . . . . . -1 -1 -1 . . . scaffold38714 WUBlastX LINE_RTE-X 51851 52129 98 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 1568355 1568561 62 - . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LINE_RTE-X 142300 142494 20 - . . scaffold43258 GLEAN mRNA 134740 154295 0.483992 + . ID=CGI_10009634; scaffold580 WUBlastX LINE_RTE-X 6443 6886 59 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_RTE-X 49096 49572 53 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_Maverick 825037 825795 84 - . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX LINE_RTE-X 57704 58276 51 - . . . . . -1 -1 -1 . . . scaffold43206 WUBlastX DNA_Sola 223044 223259 33 + . . . . . -1 -1 -1 . . . scaffold43206 WUBlastX DNA_Sola 223505 223714 77 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX DNA_Sola 39317 39589 38 - . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_DIRS 18660 18755 46 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_DIRS 18962 19120 82 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LTR_DIRS 50930 51184 54 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LTR_DIRS 51739 51930 52 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 554630 555004 84 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 555049 555168 31 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LINE_L1-Tx1 44740 45102 90 - . . . . . -1 -1 -1 . . . scaffold37730 WUBlastX LINE_L1-Tx1 43336 43380 22 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 470900 471244 28 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold33840 WUBlastX LINE_L1-Tx1 6912 7154 33 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_TcMar-Tc1 605542 605730 85 + . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX DNA_TcMar-Tc1 79381 79671 101 - . . . . . -1 -1 -1 . . . C24582 WUBlastX LINE_L1-Tx1 1131 1268 37 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 577525 577908 58 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_CR1-L2 6677 7039 94 + . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_CR1 48661 48993 124 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_CR1-L2 39891 40400 70 + . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_CR1-L2 228112 228279 44 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold683 WUBlastX LINE_CR1-L2 160271 160399 70 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold664 WUBlastX LINE_CR1-L2 474940 475350 134 + . . . . . -1 -1 -1 . . . scaffold35014 WUBlastX DNA_PiggyBac 15972 16160 83 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold41628 WUBlastX LTR_Copia 139 267 23 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX DNA_hAT-Ac 94951 95172 20 + . . scaffold424 GLEAN mRNA 91671 98594 0.990391 - . ID=CGI_10014353; scaffold157 WUBlastX LTR_Copia 648099 648911 127 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy-Cigr 47396 47968 122 - . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LTR_Gypsy-Cigr 165811 165945 96 + . . . . . -1 -1 -1 . . . scaffold1056 WUBlastX LTR_DIRS 143322 143576 25 + . . . . . -1 -1 -1 . . . scaffold37816 WUBlastX LTR_DIRS? 12983 13186 113 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LTR_Ngaro 83238 83636 130 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Ngaro 73060 73275 67 + . . scaffold412 GLEAN mRNA 49163 134272 0.261275 - . ID=CGI_10018559; scaffold39326 WUBlastX LTR_DIRS 8373 8555 70 - . . . . . -1 -1 -1 . . . scaffold659 WUBlastX LTR_DIRS? 385186 385395 151 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 117537 118145 88 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LTR_Gypsy 142190 142945 122 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy 126998 127708 106 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_hAT-Tip100 327124 327675 109 + . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LTR_Gypsy 91647 91733 71 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX LTR_Gypsy 104259 104414 45 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX LTR_Gypsy 104416 104568 123 - . . . . . -1 -1 -1 . . . scaffold148 WUBlastX LTR_Gypsy 99300 99545 56 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 39572 39919 123 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX DNA_Harbinger 2949 3149 90 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX DNA_Harbinger 3798 3905 30 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Harbinger 830367 830684 98 - . . scaffold271 GLEAN mRNA 809860 849502 0.997113 - . ID=CGI_10024500; scaffold1500 WUBlastX DNA_Harbinger 143601 143693 35 + . . . . . -1 -1 -1 . . . scaffold579 WUBlastX DNA_TcMar-Tc1 206964 207149 36 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold911 WUBlastX LINE_Penelope 182955 183446 53 + . . . . . -1 -1 -1 . . . scaffold1622 WUBlastX LINE_Penelope 2756 3154 90 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_Penelope 55017 55751 34 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-BovB 576812 577003 91 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold37422 WUBlastX DNA_TcMar-Tc1 41029 41403 91 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_TcMar-Tc1 786582 786884 30 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_TcMar-Marin 693474 693659 57 - . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LINE_L2 160407 160583 60 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold38458 WUBlastX LTR_Ngaro 5783 6088 122 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LTR_Ngaro 92576 93196 84 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold1897 WUBlastX DNA_Kolobok 395960 396109 56 - . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_L1-Tx1 209233 209445 146 + . . . . . -1 -1 -1 . . . scaffold1592 WUBlastX LINE_L1 117444 117593 22 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_RTE-X 298254 298763 90 + . . . . . -1 -1 -1 . . . scaffold36118 WUBlastX LINE_RTE-X 24239 24442 134 - . . . . . -1 -1 -1 . . . scaffold787 WUBlastX DNA_PiggyBac 83433 83609 64 + . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_PiggyBac 23353 23862 96 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX DNA_Maverick 12191 12364 69 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX DNA_Maverick 12492 12653 83 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Maverick 375157 375492 144 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_R2 703098 703208 21 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 32937 33272 28 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-X 714036 714395 35 + . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold43708 WUBlastX DNA_Sola 75801 76199 103 + . . scaffold43708 GLEAN mRNA 71613 92556 0.999995 + . ID=CGI_10011967; scaffold150 WUBlastX LINE_L1-Tx1 186903 187115 52 + . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_TcMar-Tc1 23619 23921 38 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79086 79217 47 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L1-Tx1 284761 285057 113 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_CR1 592262 592894 102 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 81573 81713 38 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_hAT 60804 61103 102 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1 194189 194821 113 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_CR1-L2 215096 215515 88 + . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold43522 WUBlastX LINE_CR1-L2 109799 110203 99 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_CR1-L2 70024 70131 54 - . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX LINE_L2 19411 19737 86 - . . . . . -1 -1 -1 . . . C34310 WUBlastX LINE_L2 12779 13096 96 - . . . . . -1 -1 -1 . . . scaffold42144 WUBlastX LTR_Gypsy 128028 128801 131 - . . scaffold42144 GLEAN mRNA 126947 143095 0.937847 + . ID=CGI_10006249; scaffold675 WUBlastX LTR_Gypsy 182465 182512 27 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Gypsy 15148 15408 148 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LTR_Gypsy 8122 8544 146 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 133184 133525 73 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy 478058 478186 54 - . . . . . -1 -1 -1 . . . scaffold1615 WUBlastX LTR_Gypsy 4831 5028 144 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_DIRS 992662 992889 139 - . . . . . -1 -1 -1 . . . scaffold38010 WUBlastX LINE_Jockey 35501 36580 75 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Ngaro 124862 125221 65 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 54527 54598 23 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 255448 255660 36 - . . . . . -1 -1 -1 . . . scaffold838 WUBlastX LTR_Gypsy 25100 25663 113 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX DNA_hAT-hATw 60000 60284 29 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX RC_Helitron 45790 45939 68 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; C32472 WUBlastX LINE_L1-Tx1 6 551 112 - . . . . . -1 -1 -1 . . . scaffold36526 WUBlastX LINE_L1 21483 21950 76 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold1424 WUBlastX DNA_Kolobok 67456 67623 28 + . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_Kolobok 114684 114851 87 - . . scaffold41798 GLEAN mRNA 114675 115137 1 - . ID=CGI_10005657; scaffold1785 WUBlastX DNA_TcMar-Marin 600959 601735 104 + . . . . . -1 -1 -1 . . . scaffold718 WUBlastX DNA_TcMar-Fot1 204725 205198 147 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Fot1 649658 650116 68 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold1191 WUBlastX DNA_NOF 73854 74585 85 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 74823 75002 48 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold39268 WUBlastX DNA_MuDR 64111 64428 69 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold43396 WUBlastX LINE_RTE-BovB 199348 199839 96 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 761580 761747 28 + . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LINE_RTE-X 212216 212386 39 + . . scaffold116 GLEAN mRNA 199454 222023 0.8905 - . ID=CGI_10009421; scaffold210 WUBlastX LINE_RTE-X 148390 148917 81 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold619 WUBlastX LINE_RTE-X 778918 779232 154 - . . scaffold619 GLEAN mRNA 775777 792970 0.999676 - . ID=CGI_10025785; scaffold1508 WUBlastX LINE_RTE-X 175236 175319 26 + . . . . . -1 -1 -1 . . . scaffold686 WUBlastX DNA_PiggyBac 31889 32035 32 + . . scaffold686 GLEAN mRNA 23498 37370 0.50665 - . ID=CGI_10004462; scaffold686 WUBlastX DNA_PiggyBac 32956 33309 54 + . . scaffold686 GLEAN mRNA 23498 37370 0.50665 - . ID=CGI_10004462; scaffold802 WUBlastX DNA_PiggyBac 31261 31443 84 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_PiggyBac 206525 206671 40 - . . . . . -1 -1 -1 . . . scaffold1835 WUBlastX LINE_RTE-BovB 316240 316566 119 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-BovB 257044 257445 45 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 93517 93927 94 + . . scaffold1221 GLEAN mRNA 84840 95252 0.99967 - . ID=CGI_10019730; scaffold1097 WUBlastX LINE_RTE-X 796685 796759 46 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold747 WUBlastX DNA_TcMar-Marin 185581 185847 153 + . . . . . -1 -1 -1 . . . scaffold42264 WUBlastX LTR_Ngaro 130606 131220 68 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_Jockey 127301 128281 89 - . . . . . -1 -1 -1 . . . scaffold35238 WUBlastX LINE_L1-Tx1 1895 2071 28 - . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L1-Tx1 28740 28838 21 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1-Tx1 1077910 1078035 21 + . . scaffold419 GLEAN mRNA 1076054 1088367 0.937506 + . ID=CGI_10028386; scaffold818 WUBlastX DNA_TcMar-Tc1 286403 286774 141 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_TcMar-Tc1 22440 22814 83 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 318602 318790 38 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_L2 270586 271233 88 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_L2 222264 222566 148 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LINE_L2 45248 45541 160 - . . scaffold488 GLEAN mRNA 23091 53480 0.998314 - . ID=CGI_10005407; scaffold1462 WUBlastX LINE_L2 159480 159701 117 - . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold42840 WUBlastX LINE_CR1 190822 191133 55 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; C34406 WUBlastX LTR_Pao 10653 11195 66 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_L2 44903 45430 95 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L2 361590 362552 60 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2 48614 49102 128 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 423640 423849 81 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 471724 472077 103 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 472414 472674 59 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold36778 WUBlastX LTR_Gypsy 33323 33892 141 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LTR_Gypsy 113925 114680 151 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_R2-Hero 159629 159859 119 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_hAT-Blackja 306950 307582 130 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 995033 995992 92 - . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LTR_Gypsy 91951 92106 128 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX DNA_Harbinger 71593 71709 22 + . . . . . -1 -1 -1 . . . scaffold775 WUBlastX DNA_Harbinger 138226 138342 22 - . . . . . -1 -1 -1 . . . scaffold41082 WUBlastX LINE_Jockey 58030 58311 38 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX DNA_Kolobok 97863 98090 130 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_Penelope 387929 388351 140 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_Penelope 649973 650929 31 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX DNA_NOF? 142941 143477 50 - . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LINE_Penelope 56281 57024 108 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX DNA_TcMar-Tc1 695278 695883 39 - . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX DNA_TcMar-Tc1 26067 26219 69 - . . scaffold1789 GLEAN mRNA 24055 30627 0.651132 - . ID=CGI_10003176; scaffold852 WUBlastX DNA_IS4EU 51471 51782 59 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 51859 51927 34 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 52009 52047 22 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 52515 52598 54 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold1149 WUBlastX LINE_L1 561457 561669 37 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1 417061 417765 139 - . . scaffold1097 GLEAN mRNA 400759 423931 0.739463 - . ID=CGI_10024529; scaffold1377 WUBlastX LINE_L1 106366 107070 139 + . . scaffold1377 GLEAN mRNA 106879 107493 0.962665 + . ID=CGI_10008620; scaffold143 WUBlastX LINE_L1 192071 192775 139 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold39966 WUBlastX LINE_RTE-BovB 76354 76782 130 - . . . . . -1 -1 -1 . . . scaffold41754 WUBlastX LINE_RTE-X 88595 88744 37 + . . scaffold41754 GLEAN mRNA 79569 95321 0.84848 - . ID=CGI_10005558; scaffold41754 WUBlastX LINE_RTE-X 88815 89123 67 + . . scaffold41754 GLEAN mRNA 79569 95321 0.84848 - . ID=CGI_10005558; scaffold1609 WUBlastX LINE_RTE-RTE 183802 184404 110 + . . . . . -1 -1 -1 . . . scaffold474 WUBlastX DNA_PiggyBac 94799 95131 46 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_RTE-X 109844 110014 97 + . . scaffold1372 GLEAN mRNA 106818 117508 0.255831 - . ID=CGI_10015663; scaffold40586 WUBlastX LINE_RTE-X 57100 57207 27 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LINE_RTE-X 233557 234408 88 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 34560 35111 114 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 919310 919432 25 + . . . . . -1 -1 -1 . . . scaffold40960 WUBlastX LINE_RTE-X 6950 7408 120 - . . scaffold40960 GLEAN mRNA 4964 19748 0.995292 - . ID=CGI_10004560; scaffold1166 WUBlastX LTR_Ngaro 110863 110973 75 - . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_RTE-X 3886 3957 27 + . . . . . -1 -1 -1 . . . scaffold42076 WUBlastX DNA_TcMar-Tc1 29210 29497 31 + . . scaffold42076 GLEAN mRNA 21711 47909 0.941371 + . ID=CGI_10006082; scaffold973 WUBlastX LINE_L1-Tx1 670213 670665 56 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_L1-Tx1 294944 295312 70 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_CR1-L2 274287 275066 515 - . . . . . -1 -1 -1 . . . C31300 WUBlastX LTR_Gypsy 5039 5452 26 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_L1 774455 774940 367 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 231546 232418 130 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_RTE-X 42713 43660 184 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LTR_Gypsy 153195 153515 71 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold1833 WUBlastX LTR_Gypsy 91551 93554 382 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1-Tx1 333445 334098 274 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1-Tx1 334050 335135 628 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_RTE-X 398296 399117 367 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LTR_Gypsy 136811 137326 440 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_RTE-X 20148 21209 416 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_RTE-X 21777 22241 74 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LTR_Gypsy-Cigr 221662 223950 873 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold363 WUBlastX LINE_L2 331269 332852 935 + . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_L2 475137 475901 398 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold1228 WUBlastX LINE_L2 475840 476595 522 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold1889 WUBlastX LTR_Gypsy 32046 32279 159 + . . . . . -1 -1 -1 . . . C35532 WUBlastX LTR_Ngaro 13260 14828 960 - . . C35532 GLEAN mRNA 11931 21500 0.999947 - . ID=CGI_10001547; scaffold1822 WUBlastX LTR_Gypsy 10316 10546 75 + . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LINE_RTE-X 118746 120080 755 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LTR_Gypsy-Cigr 59887 60189 110 + . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX LTR_Gypsy 84394 84693 160 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 84650 85675 575 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 86367 87068 287 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold337 WUBlastX LINE_L1-Tx1 1080399 1080827 84 + . . scaffold337 GLEAN mRNA 1058886 1083021 0.758954 + . ID=CGI_10028091; scaffold890 WUBlastX LINE_CR1 265850 267106 48 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_CR1 544242 544388 64 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold337 WUBlastX LINE_CR1-L2 1599958 1600368 137 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_CR1-L2 474940 475281 173 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Pao 342564 342878 168 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Pao 12937 13017 48 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_CR1-L2 65973 66626 102 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_ERV-Foamy 89033 89068 20 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 289100 289174 21 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_L2 1369066 1369740 91 + . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LTR_Ngaro 119236 119283 20 + . . scaffold825 GLEAN mRNA 107602 120026 0.634689 - . ID=CGI_10012705; scaffold714 WUBlastX LTR_DIRS 120751 120852 23 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 303925 304056 77 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1368468 1368680 27 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 280667 281032 174 - . . . . . -1 -1 -1 . . . scaffold37080 WUBlastX DNA_Harbinger 33127 33579 142 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_hAT-Ac 46142 46516 38 + . . scaffold986 GLEAN mRNA 30562 55582 0.15443 + . ID=CGI_10009957; scaffold169 WUBlastX DNA_Harbinger 391595 391735 55 + . . . . . -1 -1 -1 . . . scaffold193 WUBlastX LINE_R2-Hero 171394 171465 33 - . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_IS4EU 9137 9523 112 + . . . . . -1 -1 -1 . . . C36014 WUBlastX DNA_TcMar-Tc2 28491 28601 33 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_Kolobok 33111 33308 57 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold335 WUBlastX LINE_L1-Tx1 467286 467579 146 - . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX DNA_Kolobok 236730 236921 70 - . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold950 WUBlastX LINE_L1-Tx1 183928 184140 37 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-BovB 26511 26696 30 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_PiggyBac 328424 328942 165 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 66464 66574 53 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 66808 66969 36 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold1737 WUBlastX LINE_RTE-X 462151 462471 76 - . . scaffold1737 GLEAN mRNA 447854 462520 0.999999 + . ID=CGI_10018255; scaffold743 WUBlastX LINE_RTE-X 111235 111816 100 - . . . . . -1 -1 -1 . . . C30072 WUBlastX LINE_L1-Tx1 2965 3240 52 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LTR_DIRS 74533 75093 132 - . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX DNA_TcMar-Tc1 61950 62126 89 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LTR_Gypsy-Troyk 324244 324318 27 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LTR_Gypsy-Troyk 324616 324993 41 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LTR_Gypsy-Troyk 325056 325184 70 + . . . . . -1 -1 -1 . . . scaffold38674 WUBlastX LINE_L1-Tx1 49550 49900 87 - . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L1-Tx1 93712 93786 36 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_Pao 67752 69071 292 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_CR1-L2 308273 308851 400 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_L1 129283 129948 250 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Gypsy 203620 204579 368 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L1-Tx1 401693 402310 117 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L1-Tx1 402849 403319 224 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L1-Tx1 403329 403853 143 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L1-Tx1 403847 404278 269 - . . . . . -1 -1 -1 . . . scaffold37500 WUBlastX LINE_CR1-L2 29889 30452 54 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold601 WUBlastX LTR_Gypsy 1140180 1140539 259 - . . . . . -1 -1 -1 . . . scaffold1559 WUBlastX LINE_L2 56986 57504 113 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX LTR_Pao 70314 70817 168 - . . . . . -1 -1 -1 . . . scaffold1696 WUBlastX LTR_Pao 3286 4203 818 + . . scaffold1696 GLEAN mRNA 261 23562 0.414457 - . ID=CGI_10003674; scaffold1253 WUBlastX RC_Helitron 67294 68226 35 - . . . . . -1 -1 -1 . . . C24464 WUBlastX LINE_RTE-X 42 2741 905 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Gypsy 220171 222321 502 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_L1-Tx1 245570 246970 759 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_L1-Tx1 246960 247307 186 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_CR1 97165 97458 104 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LTR_Gypsy 39127 40386 1101 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_L1-Tx1 25056 25655 257 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_L1-Tx1 26325 26552 57 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_L1-Tx1 26576 26686 36 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Gypsy 44337 44660 233 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_CR1 158885 159433 123 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_CR1 53849 53989 115 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold485 WUBlastX LINE_CR1-L2 866498 866614 94 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 18421 18741 21 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_CR1 195209 196270 51 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 347876 348475 164 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy-Cigr 122498 122791 193 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LTR_Gypsy 169085 169720 131 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 129 284 84 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 101830 102144 37 - . . . . . -1 -1 -1 . . . scaffold1184 WUBlastX LTR_Ngaro 9839 9895 21 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Ngaro 43505 43879 166 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_L2 7833 7925 20 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_DIRS 14953 15192 113 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Gypsy 259461 260354 159 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 52354 52485 119 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_R2-Hero 343073 343858 130 + . . scaffold712 GLEAN mRNA 336086 347992 0.995237 + . ID=CGI_10016485; scaffold1143 WUBlastX DNA_Kolobok-IS4 24768 25292 184 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_R2-Hero 276070 276345 66 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_R2-Hero 276348 276650 96 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_IS4EU 54813 54965 22 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_IS4EU 91052 91261 59 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_IS4EU 91717 92187 62 - . . . . . -1 -1 -1 . . . C34256 WUBlastX DNA_Kolobok 10359 10673 89 + . . C34256 GLEAN mRNA 10416 11159 1 + . ID=CGI_10001258; scaffold867 WUBlastX DNA_IS4EU 553412 553672 99 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_IS4EU 553734 553913 26 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L1 530598 531263 32 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_TcMar-Fot1 86043 86489 104 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_TcMar-Fot1 86483 86617 39 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_TcMar-Fot1 1052031 1052699 168 - . . . . . -1 -1 -1 . . . scaffold713 WUBlastX DNA_TcMar-Marin 352225 352596 136 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LINE_Penelope 221956 222249 21 + . . . . . -1 -1 -1 . . . scaffold196 WUBlastX LINE_Penelope 293 757 39 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-X 1100608 1101048 110 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 1052839 1053249 44 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold150 WUBlastX LINE_RTE-X 1690597 1690755 66 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-X 456031 456510 71 + . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold1663 WUBlastX LINE_RTE-X 17689 18027 32 + . . scaffold1663 GLEAN mRNA 14275 33810 0.998969 - . ID=CGI_10009863; scaffold1794 WUBlastX LINE_RTE-X 504730 504906 72 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1055479 1055625 27 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1056091 1056201 30 - . . . . . -1 -1 -1 . . . scaffold41082 WUBlastX LINE_Proto2 57254 58084 51 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX DNA_Maverick 42172 42324 83 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_Maverick 9464 10126 44 + . . . . . -1 -1 -1 . . . scaffold1374 WUBlastX LINE_RTE-X 15274 15723 107 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-X 216207 216689 82 - . . scaffold1710 GLEAN mRNA 213328 218333 1 - . ID=CGI_10022347; scaffold1213 WUBlastX LINE_RTE-X 631750 632085 153 - . . . . . -1 -1 -1 . . . scaffold891 WUBlastX LINE_RTE-BovB 57899 58444 35 - . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_RTE-X 129236 129784 96 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_Penelope 705241 706422 59 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Ngaro 1040048 1040233 76 - . . . . . -1 -1 -1 . . . C27526 WUBlastX LINE_L1-Tx1 3500 3778 101 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LTR_Ngaro 591778 593346 1056 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy 67015 67824 549 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold1611 WUBlastX DNA_En-Spm 51588 52004 187 + . . . . . -1 -1 -1 . . . C33332 WUBlastX RC_Helitron 12 1895 1112 + . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LINE_RTE-X 6238 6501 69 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LTR_Gypsy-Cigr 32314 32853 338 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LTR_Gypsy-Cigr 34150 34326 187 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy-Cigr 86117 87376 828 + . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 16641 17792 518 + . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LTR_Gypsy 47394 47735 306 - . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 18990 19652 577 + . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 19624 20529 515 + . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 20570 20677 35 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 159000 159830 242 + . . . . . -1 -1 -1 . . . C30998 WUBlastX LINE_L1-Tx1 1 1887 1039 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_L2 302670 303224 94 - . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LINE_L2 192959 193294 139 + . . . . . -1 -1 -1 . . . C29438 WUBlastX LINE_L2 3436 3993 55 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold535 WUBlastX LINE_CR1-L2 565655 565786 40 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold334 WUBlastX DNA_hAT 104303 104737 113 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold286 WUBlastX LTR_Gypsy 291263 291325 36 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LTR_Gypsy 452567 452884 48 + . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold838 WUBlastX LTR_Gypsy 25705 26160 77 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_ERV1 262927 263970 154 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_Gypsy-Cigr 119920 120432 174 - . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX LTR_Ngaro 4940 6133 93 + . . scaffold36794 GLEAN mRNA 3731 8474 0.499919 + . ID=CGI_10002119; scaffold1588 WUBlastX LTR_Ngaro 32270 32374 46 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LTR_Ngaro 243533 243856 169 + . . . . . -1 -1 -1 . . . scaffold37668 WUBlastX LTR_Ngaro 30060 30482 163 + . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX LTR_Ngaro 122886 123569 117 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_R2-Hero 935836 936192 200 + . . . . . -1 -1 -1 . . . scaffold1706 WUBlastX LINE_L1 45846 46556 71 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX LINE_L1 46645 46788 35 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold599 WUBlastX LINE_L1 569595 569774 95 - . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LINE_Penelope 41017 41304 88 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LINE_Penelope 221941 222177 78 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_RTE-X 1045200 1045442 124 + . . scaffold1267 GLEAN mRNA 1030598 1050254 0.995555 + . ID=CGI_10025181; scaffold143 WUBlastX LINE_RTE-BovB 186017 186073 20 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold122 WUBlastX LINE_RTE-BovB 48335 48562 58 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LINE_RTE-BovB 209804 210934 107 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 68711 68860 52 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_PiggyBac 516745 516897 35 - . . . . . -1 -1 -1 . . . scaffold1511 WUBlastX LINE_RTE-X 75692 76069 86 + . . . . . -1 -1 -1 . . . scaffold1511 WUBlastX LINE_RTE-X 76239 76508 86 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy 109763 110557 120 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy 111177 111518 40 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_Sola 352538 353128 154 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 1082672 1082926 88 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; C34200 WUBlastX LINE_L1-Tx1 906 1082 104 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L1-Tx1 894552 894854 143 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 276820 276987 56 - . . . . . -1 -1 -1 . . . C29936 WUBlastX DNA_En-Spm 446 1561 443 - . . . . . -1 -1 -1 . . . C29936 WUBlastX DNA_En-Spm 1567 2067 377 - . . . . . -1 -1 -1 . . . C29936 WUBlastX DNA_En-Spm 2070 2738 374 - . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 276802 276915 120 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Gypsy-Cigr 111413 112738 631 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX DNA_Helitron 17364 17456 80 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy-Cigr 353334 354164 646 - . . scaffold85 GLEAN mRNA 332841 357883 0.849566 - . ID=CGI_10020703; scaffold440 WUBlastX LTR_Gypsy 325567 326025 248 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 327340 328299 384 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_RTE-X 35066 37384 1064 + . . scaffold1785 GLEAN mRNA 32641 38261 0.430327 - . ID=CGI_10024350; scaffold77 WUBlastX LINE_RTE-X 1030591 1033860 926 - . . scaffold77 GLEAN mRNA 1025613 1033746 0.999911 - . ID=CGI_10028017; scaffold6 WUBlastX LINE_RTE-X 519966 523235 1008 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy-Cigr 601980 602231 228 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 98490 99773 570 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 99784 100440 177 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 200797 201246 96 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 201352 202125 442 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_Gypsy 97377 98321 183 - . . . . . -1 -1 -1 . . . C34546 WUBlastX LTR_Pao 17342 17446 24 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_DIRS 152304 152435 35 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_CR1 357388 357966 167 + . . scaffold99 GLEAN mRNA 346755 358299 0.999992 + . ID=CGI_10021201; scaffold42840 WUBlastX DNA_Crypton 156870 157301 91 - . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX DNA_Crypton 157740 158213 90 - . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX LTR_Ngaro 44912 45943 113 - . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LTR_Ngaro 97092 97958 114 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; scaffold11 WUBlastX LTR_Ngaro 34086 35117 113 + . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX LTR_Ngaro 72493 72930 75 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LTR_DIRS 147918 148403 75 - . . scaffold1882 GLEAN mRNA 139430 150969 0.999129 + . ID=CGI_10010506; scaffold1882 WUBlastX LTR_DIRS 148929 149744 73 - . . scaffold1882 GLEAN mRNA 139430 150969 0.999129 + . ID=CGI_10010506; C33708 WUBlastX LTR_Ngaro 2130 2816 139 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Gypsy 225916 226719 146 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Gypsy 919320 919373 28 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 43514 44128 184 + . . . . . -1 -1 -1 . . . scaffold253 WUBlastX LTR_Gypsy 1552 1794 101 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 205961 206314 185 - . . . . . -1 -1 -1 . . . C32838 WUBlastX RC_Helitron 5714 5947 200 - . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX DNA_Kolobok-IS4 35526 35669 29 + . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold1068 WUBlastX DNA_IS4EU 1814 1966 40 + . . . . . -1 -1 -1 . . . scaffold1068 WUBlastX DNA_IS4EU 1941 2129 29 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX LINE_L1-Tx1 38939 39724 127 - . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_L1-Tx1 93056 93871 79 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1 117199 117738 111 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 578596 578835 42 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-BovB 22567 23418 127 + . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LINE_L2 192541 192963 144 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 106072 106176 63 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LINE_RTE-BovB 178119 178283 113 + . . scaffold1705 GLEAN mRNA 168554 181759 0.810172 - . ID=CGI_10007474; scaffold43302 WUBlastX DNA_PiggyBac 57821 58351 177 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold37290 WUBlastX LTR_Ngaro 6624 7133 200 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 552785 553225 115 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_Jockey 408649 409101 47 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 465500 466189 105 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_TcMar-Tc1 306986 307633 172 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1-Tx1 154513 155805 657 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 264645 265532 273 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_RTE-BovB 97201 97626 524 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_RTE-BovB 98900 98992 71 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_CR1 428703 429398 160 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_L2 82238 82300 24 + . . . . . -1 -1 -1 . . . C34458 WUBlastX LTR_DIRS 12096 12317 54 - . . . . . -1 -1 -1 . . . C34458 WUBlastX LTR_DIRS 13658 13711 28 - . . . . . -1 -1 -1 . . . scaffold38448 WUBlastX LTR_Ngaro 32634 33083 108 - . . scaffold38448 GLEAN mRNA 31492 37691 0.999937 + . ID=CGI_10002779; scaffold43662 WUBlastX DNA_IS4EU 31326 31547 95 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_IS4EU 31592 31732 113 + . . . . . -1 -1 -1 . . . scaffold366 WUBlastX DNA_Harbinger 119128 119361 82 - . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold366 WUBlastX DNA_Harbinger 119340 119579 92 - . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold368 WUBlastX DNA_Harbinger 511970 512143 25 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Fot1 72146 72331 32 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Fot1 73038 73334 52 - . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LINE_Penelope 8495 8764 91 - . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_Kolobok 77559 78005 104 + . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_L1 465804 466439 163 + . . . . . -1 -1 -1 . . . scaffold41998 WUBlastX LINE_L1 22749 22994 23 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX LINE_L1 212523 213149 157 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LINE_RTE-X 338912 339397 117 + . . scaffold772 GLEAN mRNA 336765 344045 0.544674 + . ID=CGI_10016594; scaffold616 WUBlastX DNA_PiggyBac 405307 405705 180 - . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX LINE_RTE-X 69800 69946 49 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold40050 WUBlastX LINE_RTE-X 51776 51976 33 - . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_RTE-X 109161 109610 125 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold243 WUBlastX LINE_RTE-X 139111 139224 37 - . . . . . -1 -1 -1 . . . scaffold28372 WUBlastX LINE_RTE-X 3866 4345 125 + . . . . . -1 -1 -1 . . . scaffold823 WUBlastX LINE_RTE-X 88886 89419 138 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-X 955591 956124 138 + . . scaffold1301 GLEAN mRNA 940827 961246 0.536299 + . ID=CGI_10027751; scaffold1094 WUBlastX LINE_RTE-X 230900 231433 138 + . . scaffold1094 GLEAN mRNA 207588 241472 0.989752 + . ID=CGI_10021816; scaffold513 WUBlastX DNA_Sola 532654 533811 86 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 176403 176699 160 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_L1-Tx1 523216 523650 166 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold6 WUBlastX LINE_Jockey 243743 243850 24 - . . scaffold6 GLEAN mRNA 243521 244840 0.993546 - . ID=CGI_10022303; scaffold168 WUBlastX DNA_TcMar-Tc1 1062983 1063270 171 + . . scaffold168 GLEAN mRNA 1061165 1068516 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062983 1063270 171 + . . scaffold168 GLEAN mRNA 1061468 1075146 0.901342 - . ID=CGI_10025627; scaffold1087 WUBlastX LTR_Gypsy 12928 14586 679 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold40140 WUBlastX LTR_Gypsy 37381 39186 1416 - . . . . . -1 -1 -1 . . . C29428 WUBlastX LTR_Gypsy 3 803 689 + . . . . . -1 -1 -1 . . . scaffold39214 WUBlastX DNA_Academ 30738 31451 293 - . . . . . -1 -1 -1 . . . scaffold39214 WUBlastX DNA_Academ 33602 33700 26 - . . . . . -1 -1 -1 . . . scaffold39214 WUBlastX DNA_Academ 33720 33908 46 - . . . . . -1 -1 -1 . . . scaffold788 WUBlastX LINE_L1-Tx1 33028 34536 301 - . . . . . -1 -1 -1 . . . scaffold788 WUBlastX LINE_L1-Tx1 34320 35183 518 - . . . . . -1 -1 -1 . . . scaffold788 WUBlastX LINE_L1-Tx1 36434 36595 48 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 689740 689928 33 + . . . . . -1 -1 -1 . . . scaffold870 WUBlastX DNA_hAT 52423 52791 195 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold85 WUBlastX LINE_CR1 365752 366345 159 - . . . . . -1 -1 -1 . . . scaffold43562 WUBlastX LINE_CR1 167038 167133 34 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167038 167133 34 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold30716 WUBlastX LINE_L2 446 1363 41 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy-Cigr 481407 482153 182 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy-Cigr 115429 116202 157 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L2 614818 614919 21 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX DNA_En-Spm 422284 422754 190 - . . . . . -1 -1 -1 . . . scaffold1646 WUBlastX LTR_Gypsy 155772 156359 23 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 95611 95775 72 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold353 WUBlastX LTR_Gypsy 26 463 109 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_Gypsy 449121 449189 20 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold1480 WUBlastX DNA_Harbinger 83484 83723 100 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Harbinger 83931 84047 112 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Harbinger 734011 734430 200 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 102285 102449 25 + . . . . . -1 -1 -1 . . . scaffold1471 WUBlastX DNA_IS4EU 11942 12199 21 + . . . . . -1 -1 -1 . . . scaffold287 WUBlastX LINE_L1 61424 62014 129 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_L1 199445 199699 58 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold1525 WUBlastX DNA_Kolobok 236234 236515 89 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_Kolobok 236901 237125 84 + . . . . . -1 -1 -1 . . . scaffold40270 WUBlastX LINE_L1-Tx1 5303 5797 71 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_P 560396 560494 26 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 132373 132795 66 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 39 650 195 - . . . . . -1 -1 -1 . . . scaffold43664 WUBlastX LINE_RTE-X 213794 213946 66 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; C31738 WUBlastX DNA_Sola 9361 10125 142 - . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX DNA_Sola 13645 13983 182 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_Sola 59942 60484 197 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX DNA_TcMar-Tc1 12746 12925 49 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_TcMar-Tc1 404127 404864 94 + . . scaffold1402 GLEAN mRNA 402740 419521 0.863535 + . ID=CGI_10017593; scaffold1352 WUBlastX LINE_L1-Tx1 6650 6973 57 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1-Tx1 145172 145306 66 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L2 286024 286734 323 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LINE_L2 286682 287965 721 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold37358 WUBlastX LINE_CR1 37866 38966 600 - . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_Gypsy 41244 41366 55 + . . . . . -1 -1 -1 . . . scaffold36816 WUBlastX LINE_L2 6907 7113 45 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_CR1-L2 182326 182415 21 + . . scaffold191 GLEAN mRNA 173889 184742 0.717223 - . ID=CGI_10022414; scaffold1359 WUBlastX LINE_L2 180839 181018 24 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_L2 181020 181307 150 - . . . . . -1 -1 -1 . . . scaffold161 WUBlastX DNA_hAT-Tip100 449 703 171 - . . . . . -1 -1 -1 . . . C32028 WUBlastX LINE_L1 10121 10660 215 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Pao 198520 198783 47 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold488 WUBlastX LTR_Pao 85801 86316 138 - . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LTR_DIRS 148507 148818 186 + . . scaffold1084 GLEAN mRNA 143113 160475 0.702333 + . ID=CGI_10010078; scaffold172 WUBlastX LTR_Ngaro 278846 279136 34 - . . scaffold172 GLEAN mRNA 274118 285723 0.998306 - . ID=CGI_10013528; scaffold1388 WUBlastX LTR_Ngaro 151920 152744 153 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LTR_Ngaro 241154 241552 199 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Ngaro 1183073 1183996 67 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L2 164163 164972 109 - . . . . . -1 -1 -1 . . . scaffold118 WUBlastX DNA_IS4EU 24814 25386 191 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX DNA_Kolobok-IS4 100483 100641 38 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 129368 129568 96 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129368 129568 96 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 129709 129813 83 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129709 129813 83 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 130062 130259 72 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 130062 130259 72 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold42558 WUBlastX LTR_Gypsy 71651 72400 41 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy 168524 169135 80 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold347 WUBlastX LINE_L1 143616 143705 40 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LINE_L2 166219 166917 168 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 866035 866481 85 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 499141 499899 46 + . . . . . -1 -1 -1 . . . scaffold1892 WUBlastX LINE_L1-Tx1 287577 287915 217 + . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 308814 309017 66 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-BovB 253947 254405 39 - . . scaffold1174 GLEAN mRNA 241580 253987 0.484872 - . ID=CGI_10026031; scaffold614 WUBlastX LINE_RTE-X 454300 454371 25 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_RTE-X 141702 141830 67 + . . . . . -1 -1 -1 . . . C29974 WUBlastX LINE_RTE-X 1861 1914 46 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_RTE-BovB 260991 261194 73 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_RTE-X 1856 2449 159 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 169209 169739 178 + . . scaffold336 GLEAN mRNA 153891 174105 1 - . ID=CGI_10012567; scaffold336 WUBlastX LINE_RTE-X 169721 169804 36 + . . scaffold336 GLEAN mRNA 153891 174105 1 - . ID=CGI_10012567; scaffold88 WUBlastX LINE_L1-Tx1 23524 24081 36 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1-Tx1 23524 24081 36 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold149 WUBlastX LINE_L1-Tx1 192117 192629 114 + . . scaffold149 GLEAN mRNA 179199 193397 0.990232 - . ID=CGI_10025295; scaffold1845 WUBlastX LINE_L1-Tx1 146081 146773 34 + . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX DNA_hAT-Tip100 145361 145603 27 + . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX DNA_hAT-Tip100 146461 146787 44 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_L1-Tx1 208368 208685 56 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Maverick 63305 64417 275 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_L1-Tx1 54339 57929 1131 + . . . . . -1 -1 -1 . . . scaffold1742 WUBlastX LTR_Copia 249057 249140 33 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 497791 498048 145 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 498030 499796 864 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 173339 175291 1282 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold35180 WUBlastX LINE_L1-Tx1 19558 20895 519 - . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold42994 WUBlastX LTR_Gypsy 186859 187707 122 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy 1300622 1301812 114 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 727416 727721 202 - . . . . . -1 -1 -1 . . . scaffold309 WUBlastX LTR_Gypsy 132501 133235 86 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_DIRS 150766 151662 158 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX DNA_TcMar-Fot1 121032 121412 182 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX DNA_hAT 315437 316135 185 - . . scaffold576 GLEAN mRNA 315203 324696 0.999395 - . ID=CGI_10018773; scaffold853 WUBlastX LINE_CR1 444591 444959 39 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 112409 112897 146 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX DNA_En-Spm 3861 4088 68 + . . scaffold57 GLEAN mRNA 3208 18413 0.810616 + . ID=CGI_10020530; scaffold57 WUBlastX DNA_En-Spm 4291 4383 32 + . . scaffold57 GLEAN mRNA 3208 18413 0.810616 + . ID=CGI_10020530; scaffold1134 WUBlastX LTR_Ngaro 92167 92607 132 - . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 131340 131555 96 - . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LTR_Gypsy 2702 2998 249 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold227 WUBlastX DNA_TcMar-Marin 316167 316508 128 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LINE_L1-Tx1 52818 53630 69 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX DNA_TcMar-Fot1 29380 29676 37 + . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX DNA_TcMar-Fot1 120728 121021 64 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LINE_Penelope 98997 99371 100 + . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LINE_RTE-BovB 147127 147498 34 + . . . . . -1 -1 -1 . . . C27832 WUBlastX LINE_RTE-BovB 1612 2067 221 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 175216 175566 64 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_RTE-X 165605 166144 102 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_RTE-X 21862 21930 41 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 75399 76172 164 + . . . . . -1 -1 -1 . . . scaffold1553 WUBlastX LINE_RTE-X 61405 62349 52 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_RTE-X 512361 512756 218 + . . . . . -1 -1 -1 . . . scaffold38524 WUBlastX DNA_TcMar-Tigge 14395 15162 225 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_DIRS 252893 253183 34 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold102 WUBlastX LTR_Pao 730996 731823 207 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 68162 68662 365 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_RTE-X 172435 172962 74 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 394034 394531 489 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold38284 WUBlastX LTR_Gypsy 27758 28165 388 - . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LTR_Pao 257113 257853 700 + . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX DNA_hAT 106059 106310 106 - . . scaffold1717 GLEAN mRNA 96290 107438 1 - . ID=CGI_10013393; scaffold1717 WUBlastX DNA_hAT 107160 107651 122 - . . scaffold1717 GLEAN mRNA 96290 107438 1 - . ID=CGI_10013393; scaffold614 WUBlastX LINE_Jockey 438319 438711 71 - . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LTR_DIRS 51329 51451 51 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 172844 173575 193 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 237799 238653 186 - . . . . . -1 -1 -1 . . . scaffold36716 WUBlastX LTR_Gypsy 16 870 186 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 23049 23594 141 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Ngaro 602730 603485 120 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold1097 WUBlastX LTR_Gypsy 480546 480689 20 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 97951 98169 33 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold597 WUBlastX LINE_I 35928 36797 89 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_I 37616 38485 89 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold1512 WUBlastX DNA_IS4EU 209147 209371 20 + . . . . . -1 -1 -1 . . . C34110 WUBlastX DNA_Kolobok-IS4 12603 12776 44 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold1750 WUBlastX LINE_L1 646259 646651 93 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_L1 646680 646895 123 + . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LINE_RTE-X 18040 18675 195 - . . scaffold1833 GLEAN mRNA 17986 18591 0.776794 - . ID=CGI_10007297; scaffold1833 WUBlastX LINE_RTE-X 18040 18675 195 - . . scaffold1833 GLEAN mRNA 18617 28551 1 - . ID=CGI_10007298; scaffold33640 WUBlastX LINE_RTE-X 9565 10176 209 - . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_RTE-X 121132 121551 46 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-X 470081 470473 171 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-BovB 1132 1374 135 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1383 1502 75 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1806 1886 42 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold626 WUBlastX DNA_Maverick 394129 394266 39 - . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1-Tx1 13039 13155 30 - . . . . . -1 -1 -1 . . . scaffold39088 WUBlastX DNA_TcMar-Tc1 40571 40834 51 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold198 WUBlastX DNA_TcMar-Tc1 15573 16463 188 - . . scaffold198 GLEAN mRNA 4098 23255 0.65089 + . ID=CGI_10027787; scaffold150 WUBlastX LTR_Gypsy 797151 797189 21 + . . . . . -1 -1 -1 . . . scaffold42128 WUBlastX DNA_TcMar-Tc1 12002 12727 193 + . . scaffold42128 GLEAN mRNA 1970 15266 0.99078 + . ID=CGI_10006194; scaffold43076 WUBlastX LTR_Gypsy 165240 165875 474 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 165869 166450 334 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 89468 90037 532 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 90013 90888 342 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1 244129 245274 450 + . . scaffold175 GLEAN mRNA 242942 249112 0.999907 + . ID=CGI_10021317; scaffold175 WUBlastX LINE_L1 245267 246748 836 + . . scaffold175 GLEAN mRNA 242942 249112 0.999907 + . ID=CGI_10021317; scaffold37430 WUBlastX LTR_Pao 40482 40640 123 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; C20604 WUBlastX DNA_IS 2 1102 1814 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LTR_Pao 5186 5452 252 - . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX LINE_CR1 243895 244287 138 + . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX LINE_CR1 244317 244547 39 + . . . . . -1 -1 -1 . . . C13980 WUBlastX LTR_Gypsy 3 233 256 - . . . . . -1 -1 -1 . . . C36172 WUBlastX DNA_IS4EU 1382 1591 69 - . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX RC_Helitron 55871 56437 240 - . . scaffold1454 GLEAN mRNA 52591 59447 0.570116 - . ID=CGI_10004313; scaffold373 WUBlastX LTR_Gypsy 1648 2127 108 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX DNA_Harbinger 970 1422 75 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX DNA_Harbinger 1439 1783 126 + . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX DNA_Harbinger 11324 11821 134 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LINE_L1-Tx1 211533 212114 150 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1-Tx1 1055424 1055801 245 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_TcMar-Fot1 217904 218263 121 - . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_TcMar-Fot1 44709 44906 24 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Ngaro 125674 126075 148 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Ngaro 126075 126245 60 + . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX LINE_RTE-BovB 177344 177442 65 - . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX LINE_RTE-BovB 177451 177651 219 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-BovB 112474 113004 153 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 608739 608840 58 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 209232 209420 82 - . . . . . -1 -1 -1 . . . scaffold1086 WUBlastX LINE_RTE-X 51386 52024 158 - . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_RTE-X 111328 111813 155 - . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_RTE-X 11924 12400 73 - . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LINE_RTE-X 227220 227873 161 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_RTE-X 141839 142093 44 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 30147 30284 28 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L1-Tx1 89974 90840 67 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1-Tx1 42882 43628 104 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 174754 176007 1048 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 415621 418941 1762 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_CR1 436818 437261 251 + . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold770 WUBlastX LINE_CR1 136986 137702 199 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L2 70219 70323 64 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_CR1-L2 30721 31224 229 - . . . . . -1 -1 -1 . . . scaffold43064 WUBlastX LINE_CR1 162126 162878 175 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy-Cigr 640542 641165 93 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy-Cigr 641544 641744 156 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_Ngaro 78713 79201 235 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 484218 484787 81 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold33594 WUBlastX LTR_Ngaro 13528 14265 174 + . . . . . -1 -1 -1 . . . C23316 WUBlastX LTR_Ngaro 929 1675 117 - . . C23316 GLEAN mRNA 644 1111 0.999999 - . ID=CGI_10000116; scaffold36598 WUBlastX LTR_Ngaro 27987 28955 157 - . . scaffold36598 GLEAN mRNA 27586 31293 0.99428 - . ID=CGI_10002013; scaffold298 WUBlastX LINE_L2 465822 466214 233 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_DIRS 87628 88356 188 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX DNA_hAT-hATw 258930 260093 113 + . . scaffold1863 GLEAN mRNA 253566 292141 0.240564 - . ID=CGI_10016692; scaffold35640 WUBlastX LINE_Tad1? 21760 22683 169 + . . . . . -1 -1 -1 . . . C34256 WUBlastX DNA_Kolobok 11547 11738 43 + . . . . . -1 -1 -1 . . . scaffold34442 WUBlastX LTR_Ngaro 14455 15051 174 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 613759 614310 223 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Penelope 1030986 1031195 73 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_L1 23073 23507 32 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 23073 23507 32 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold41700 WUBlastX LINE_L1 55927 56367 249 - . . . . . -1 -1 -1 . . . scaffold665 WUBlastX LINE_RTE-X 110057 110446 231 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_RTE-X 113043 113291 74 + . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 69424 69678 23 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-X 947300 947689 175 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-X 168686 169219 66 + . . scaffold689 GLEAN mRNA 162763 181677 0.999 - . ID=CGI_10014826; scaffold1097 WUBlastX LTR_DIRS 455206 455355 20 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_DIRS 455378 455794 160 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 178767 178979 20 + . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold237 WUBlastX LINE_RTE-X 590658 591050 192 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX DNA_Sola 19106 19333 68 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1-Tx1 137358 137657 80 - . . scaffold288 GLEAN mRNA 119793 142586 0.674065 - . ID=CGI_10020658; scaffold575 WUBlastX LTR_Gypsy-Troyk 93883 96648 119 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_TcMar-Tc1 221870 221941 21 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 283592 285142 113 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold925 WUBlastX LTR_Gypsy 263464 264381 736 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_Gypsy 265089 265547 529 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 331153 331431 39 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX DNA_hAT 661416 661610 171 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661416 661610 171 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1750 WUBlastX LTR_Pao 621779 622342 310 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold43680 WUBlastX DNA_IS 7234 8304 1703 + . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_IS 8282 8494 314 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L2 703531 704316 302 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L2 704319 704648 186 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L2 704666 706471 1026 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L2 706830 707141 156 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Gypsy 170812 171063 162 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Gypsy 171485 171547 21 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 327214 327924 275 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 218113 219063 278 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 459765 460151 104 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 714221 714436 129 + . . . . . -1 -1 -1 . . . scaffold366 WUBlastX DNA_Harbinger 108543 109022 212 - . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold1352 WUBlastX LTR_Gypsy 154576 154851 143 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 317902 318036 26 + . . . . . -1 -1 -1 . . . scaffold129 WUBlastX LINE_L1-Tx1 47329 47517 47 - . . . . . -1 -1 -1 . . . scaffold296 WUBlastX LINE_RTE-X 4915 5607 204 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 620518 620712 139 + . . . . . -1 -1 -1 . . . C28030 WUBlastX LINE_L1-Tx1 1259 1378 49 + . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX LTR_Gypsy 165586 165651 38 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX LTR_Gypsy 165633 169208 1983 - . . . . . -1 -1 -1 . . . scaffold43194 WUBlastX LTR_Gypsy-Cigr 216868 217914 883 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Pao 1064831 1069330 1105 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Pao 389129 389605 395 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Pao 172099 172266 141 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold20 WUBlastX LTR_Gypsy 679224 680771 1173 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 680728 681522 523 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Pao 84611 84973 290 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold1403 WUBlastX LTR_Gypsy 32343 32912 220 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 798222 799097 59 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold971 WUBlastX LTR_Pao 63329 63715 99 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_L2 293366 293575 69 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_L2 293620 293862 166 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_L2 74451 74690 32 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_CR1-L2 467503 468120 232 + . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX LTR_Ngaro 43158 43505 143 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold317 WUBlastX LTR_DIRS 487869 488018 63 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 140227 140697 134 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX DNA_Harbinger 112001 112126 124 - . . scaffold489 GLEAN mRNA 93550 113740 0.603671 - . ID=CGI_10020228; scaffold489 WUBlastX DNA_Harbinger 112688 113044 129 - . . scaffold489 GLEAN mRNA 93550 113740 0.603671 - . ID=CGI_10020228; scaffold58 WUBlastX LINE_L2 716222 717289 166 - . . . . . -1 -1 -1 . . . C27526 WUBlastX LINE_L1-Tx1 3452 3799 73 + . . . . . -1 -1 -1 . . . C27526 WUBlastX LINE_L1-Tx1 3786 4772 89 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_L1 11436 11999 127 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LINE_Penelope 112720 113481 132 - . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LINE_L2 131732 131833 45 + . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_RTE-X 144791 144940 75 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 334607 334771 79 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_RTE-X 270893 271567 139 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_DIRS 326487 326816 248 - . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX DNA_TcMar-Tc1 44219 44545 113 - . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX DNA_TcMar-Tc1 44554 44757 63 - . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX DNA_TcMar-Tc1 44751 45017 46 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 57977 60340 2107 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 106917 107429 315 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_RTE-BovB 476242 479163 2053 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 518837 519142 105 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Pao 1020385 1021263 524 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LTR_Gypsy 125303 125380 29 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_CR1 90492 91250 26 + . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_Jockey 205304 206389 127 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Ngaro 20541 20717 39 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_DIRS 226572 227228 246 - . . . . . -1 -1 -1 . . . C26936 WUBlastX LTR_Gypsy 2202 3359 178 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold788 WUBlastX DNA_IS4EU 124942 125250 161 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX DNA_IS4EU 22018 22443 60 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Ngaro 311794 312060 187 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Ngaro 312159 312512 72 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_TcMar-Fot1 3972 4976 160 - . . scaffold20 GLEAN mRNA 478 8308 1 - . ID=CGI_10023555; scaffold1877 WUBlastX LINE_RTE-X 299290 299493 83 + . . scaffold1877 GLEAN mRNA 295978 306967 1 + . ID=CGI_10011963; scaffold951 WUBlastX LINE_RTE-X 198342 198869 290 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_RTE-X 3911 4474 149 + . . . . . -1 -1 -1 . . . scaffold65 WUBlastX LINE_RTE-X 140297 140674 109 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_PiggyBac 172928 173050 70 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 723277 723693 161 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 99063 99155 29 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 193153 194538 943 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 195236 197122 1031 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_L1-Tx1 437587 441390 1955 - . . scaffold583 GLEAN mRNA 412825 450410 0.995957 - . ID=CGI_10023625; scaffold39482 WUBlastX LTR_Pao 47021 47617 290 + . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LTR_Pao 187706 188065 154 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 147324 148268 165 - . . scaffold1009 GLEAN mRNA 143472 160185 0.373363 + . ID=CGI_10028719; scaffold767 WUBlastX DNA_Crypton 75427 75666 93 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX DNA_Crypton 75887 76057 56 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX DNA_Crypton 76418 76729 79 - . . . . . -1 -1 -1 . . . C29942 WUBlastX LTR_Ngaro 2 454 270 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 513666 514385 276 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 666611 666685 27 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX DNA_TcMar-Fot1 172390 172923 149 - . . scaffold828 GLEAN mRNA 167866 174886 0.999415 - . ID=CGI_10007370; scaffold1896 WUBlastX LTR_Ngaro 485971 486243 59 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold827 WUBlastX LINE_Proto2 47519 48538 67 - . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_RTE-BovB 264973 265134 52 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 341026 341580 236 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LINE_RTE-X 147405 147932 71 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 1504651 1505001 48 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_L1-Tx1 707407 707559 51 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold502 WUBlastX LINE_L1-Tx1 250427 250807 90 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 306489 307460 442 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 309622 310278 204 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 310425 310856 136 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LINE_CR1-L2 43687 44316 260 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_CR1-L2 270505 271119 262 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L2 459172 460716 174 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_En-Spm 224931 226091 209 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_DIRS 55926 56429 241 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 356707 356919 138 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_IS4EU 160067 160483 301 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Harbinger 170238 170981 181 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LTR_Gypsy 379486 380397 238 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_L1 55052 55135 25 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 257899 258084 27 + . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LINE_RTE-BovB 129876 129941 26 + . . scaffold975 GLEAN mRNA 123992 132770 1 - . ID=CGI_10013325; scaffold975 WUBlastX LINE_RTE-BovB 130719 130889 32 + . . scaffold975 GLEAN mRNA 123992 132770 1 - . ID=CGI_10013325; scaffold43868 WUBlastX LINE_RTE-BovB 248674 249060 258 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 209591 210064 280 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold43818 WUBlastX LINE_RTE-X 329204 329668 187 + . . scaffold43818 GLEAN mRNA 325023 332374 0.596002 + . ID=CGI_10012778; C28510 WUBlastX DNA_Sola 658 855 47 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_DIRS 254266 254964 251 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold1866 WUBlastX LINE_CR1-L2 247420 247743 118 - . . scaffold1866 GLEAN mRNA 240570 251729 0.651094 - . ID=CGI_10017912; scaffold1104 WUBlastX LINE_RTE-BovB 164224 164289 24 + . . scaffold1104 GLEAN mRNA 162897 187197 0.499418 + . ID=CGI_10020361; scaffold373 WUBlastX LTR_Gypsy-Cigr 612 698 44 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_CR1 176377 176661 184 + . . . . . -1 -1 -1 . . . C31982 WUBlastX LTR_Ngaro 8221 8838 181 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 133968 134033 21 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold393 WUBlastX DNA_Harbinger 1056750 1057616 187 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold37532 WUBlastX LTR_Gypsy 41150 41680 336 + . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold368 WUBlastX DNA_IS4EU 88281 88631 59 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold43146 WUBlastX DNA_IS4EU 104139 104378 84 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 106834 107064 86 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold41008 WUBlastX LINE_Penelope 33464 34360 238 - . . . . . -1 -1 -1 . . . scaffold39050 WUBlastX LINE_RTE-BovB 55342 55605 225 + . . . . . -1 -1 -1 . . . scaffold35860 WUBlastX LINE_RTE-X 20258 20623 130 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Maverick 203292 204182 250 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy 198647 199069 303 + . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LTR_Gypsy 138090 139973 1635 + . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LTR_Gypsy 140479 140946 223 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy 110279 110557 139 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy 111105 111374 48 - . . . . . -1 -1 -1 . . . scaffold33382 WUBlastX LTR_Gypsy 9202 10305 276 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 85972 86403 126 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold290 WUBlastX LTR_Gypsy 552412 552690 238 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold290 WUBlastX LTR_Gypsy 552735 552935 92 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold241 WUBlastX DNA_IS4EU 529380 529511 51 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX DNA_IS4EU 830084 830266 55 - . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold43406 WUBlastX LTR_ERV1 115210 116277 137 + . . . . . -1 -1 -1 . . . C26314 WUBlastX DNA_Harbinger 945 1268 315 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_Kolobok 56168 56299 25 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold1261 WUBlastX LINE_L1 21430 21564 46 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 1188783 1189409 70 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-BovB 527792 528205 361 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 480599 480976 284 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Pao 359712 359930 65 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX DNA_TcMar-Tc1 18104 18271 72 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX DNA_TcMar-Tc1 18749 19153 57 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_CR1-L2 75443 75997 252 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L2 197240 197890 280 - . . scaffold1020 GLEAN mRNA 186471 206717 0.999666 - . ID=CGI_10012855; scaffold42210 WUBlastX LTR_Ngaro 1328 1771 203 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_En-Spm 720648 721520 279 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_En-Spm 727437 728309 279 - . . . . . -1 -1 -1 . . . scaffold36202 WUBlastX LTR_Gypsy 28993 29472 242 - . . . . . -1 -1 -1 . . . scaffold577 WUBlastX RC_Helitron 115482 115568 27 + . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_L1 157000 157869 233 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L1 71605 71994 163 - . . . . . -1 -1 -1 . . . scaffold42364 WUBlastX LINE_L1 106296 106685 163 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 189096 189137 23 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_TcMar-Fot1 218415 220301 271 - . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LINE_Penelope 3748 4248 161 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LINE_Penelope 4320 4586 122 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 211257 211760 268 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_Maverick 1261618 1262157 254 + . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold41318 WUBlastX LINE_RTE-X 88979 89743 295 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc2 726238 726360 52 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_L1-Tx1 579091 579663 47 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LTR_Gypsy-Troyk 185574 185906 115 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Gypsy 257719 259071 953 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Gypsy 259031 261715 1705 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L2 786071 787123 212 - . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LINE_L2 131053 131697 275 + . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 55768 56103 50 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_IS4EU 279053 279589 297 - . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 279053 279589 297 - . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1743 WUBlastX DNA_TcMar-Fot1 169162 170076 349 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1 212235 212951 218 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; C34256 WUBlastX DNA_Kolobok 10407 10697 151 + . . C34256 GLEAN mRNA 10416 11159 1 + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 11215 11451 57 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_RTE-BovB 368537 368989 352 + . . scaffold780 GLEAN mRNA 368378 381759 0.651026 - . ID=CGI_10024731; scaffold1838 WUBlastX LINE_L2 335834 336778 141 - . . scaffold1838 GLEAN mRNA 332958 349598 0.563165 + . ID=CGI_10014264; scaffold739 WUBlastX LTR_Pao 39012 39230 96 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_DIRS? 89380 89598 117 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_DIRS? 89597 90067 184 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 874855 875076 36 - . . . . . -1 -1 -1 . . . scaffold42214 WUBlastX LTR_Gypsy 14762 15184 224 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1-Tx1 155467 155883 132 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L2 489194 489385 45 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold594 WUBlastX LTR_Gypsy 2471 3358 361 + . . . . . -1 -1 -1 . . . scaffold43170 WUBlastX LINE_RTE-BovB 29566 29808 113 + . . scaffold43170 GLEAN mRNA 562 49035 0.0513125 - . ID=CGI_10009100; scaffold70 WUBlastX LTR_DIRS 852978 853127 89 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 318879 319091 80 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L2 823263 824123 198 + . . . . . -1 -1 -1 . . . scaffold1375 WUBlastX LINE_L2 18651 19103 348 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_CR1 329983 330075 34 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 229380 229700 179 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LTR_Gypsy 556174 556293 70 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold488 WUBlastX LTR_Gypsy 64382 64621 153 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 1923 2255 240 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 2258 2410 108 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Maverick 46901 48004 175 - . . . . . -1 -1 -1 . . . C28510 WUBlastX DNA_Sola 2575 2772 45 - . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Gypsy 76231 76737 190 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX DNA_TcMar-Tc1 329712 330251 142 + . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX LTR_Gypsy 210082 211263 296 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 169555 170643 365 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold100 WUBlastX DNA_IS4EU 602008 602262 28 - . . . . . -1 -1 -1 . . . scaffold38152 WUBlastX DNA_hAT-hATw 6752 9220 104 - . . scaffold38152 GLEAN mRNA 1846 12564 0.999993 - . ID=CGI_10002678; scaffold313 WUBlastX LTR_Ngaro 640989 641660 302 + . . . . . -1 -1 -1 . . . scaffold270 WUBlastX LINE_RTE-BovB 95527 95643 52 + . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX DNA_TcMar-Tc1 330019 330864 310 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_L1-Tx1 50186 50611 77 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 399545 399964 110 + . . scaffold86 GLEAN mRNA 398522 403007 0.217037 + . ID=CGI_10028152; scaffold36806 WUBlastX LTR_Ngaro 25022 25216 51 + . . scaffold36806 GLEAN mRNA 22975 34393 0.994851 + . ID=CGI_10002150; scaffold667 WUBlastX LTR_Gypsy 91981 92502 37 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 330541 331065 43 - . . . . . -1 -1 -1 . . . scaffold292 WUBlastX DNA_TcMar-Marin 37091 37468 140 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold1484 WUBlastX LINE_RTE-X 251466 251738 145 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Tip100 762934 763167 69 - . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_L1-Tx1 58869 59060 22 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_TcMar-Tc1 20087 20482 186 - . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX LINE_CR1 91414 91839 214 + . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_CR1 163039 163227 55 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold1708 WUBlastX LINE_CR1-L2 6969 8450 258 - . . scaffold1708 GLEAN mRNA 6391 9576 0.777526 + . ID=CGI_10005574; scaffold142 WUBlastX LTR_Gypsy 514557 514964 254 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_Gypsy 410576 410716 27 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 229650 229847 133 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_Penelope 221350 221793 145 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_Penelope 62469 62627 51 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Kolobok 143448 143831 74 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; C28574 WUBlastX LINE_L1-Tx1 3245 3637 131 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 153169 153495 30 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_RTE-X 111590 112576 302 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 200287 200979 140 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 202107 202256 59 - . . scaffold1772 GLEAN mRNA 201858 204314 0.999554 - . ID=CGI_10014812; scaffold1623 WUBlastX LTR_Gypsy 54847 55887 216 + . . . . . -1 -1 -1 . . . scaffold37732 WUBlastX LINE_L1 2093 2230 32 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX DNA_PiggyBac 195560 195775 123 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX DNA_PiggyBac 197529 197747 36 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX DNA_PiggyBac 198400 198936 144 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_RTE-X 237177 237662 189 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_CR1 163235 163330 48 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold1210 WUBlastX DNA_Academ 242421 242981 329 - . . scaffold1210 GLEAN mRNA 242968 243372 0.866433 - . ID=CGI_10014607; C23428 WUBlastX LTR_Ngaro 899 1960 318 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Ngaro 13029 13778 210 + . . . . . -1 -1 -1 . . . scaffold1636 WUBlastX LTR_Gypsy 5461 6228 386 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 49279 50049 387 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_hAT-hATw 844867 845955 185 + . . scaffold370 GLEAN mRNA 838405 846799 0.855201 + . ID=CGI_10025566; scaffold41852 WUBlastX LINE_L1-Tx1 762 1019 95 + . . . . . -1 -1 -1 . . . scaffold41852 WUBlastX LINE_L1-Tx1 1007 1087 68 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX DNA_TcMar-Tc1 388643 389590 239 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Gypsy 748162 748842 265 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Gypsy 748992 749324 102 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 10910 11854 391 + . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX DNA_hAT-hATw 48693 49814 272 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_R2-Hero 178573 178800 65 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_R2-Hero 178818 179504 164 + . . . . . -1 -1 -1 . . . scaffold1429 WUBlastX DNA_IS4EU 15775 16470 329 + . . scaffold1429 GLEAN mRNA 13458 17611 0.727726 + . ID=CGI_10001355; scaffold1424 WUBlastX DNA_Harbinger 38935 39195 88 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX DNA_Harbinger 39996 40109 116 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX DNA_Harbinger 40775 41059 107 - . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 86159 86647 189 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LTR_Gypsy 565359 566150 428 + . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LINE_L1-Tx1 101123 101347 114 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold43388 WUBlastX LINE_L1 155530 155880 277 - . . . . . -1 -1 -1 . . . scaffold941 WUBlastX DNA_TcMar-Tc1 33400 34053 230 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_CR1 123351 125150 248 + . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_RTE-X 12364 12594 39 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_DIRS 456432 457013 133 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_DIRS 457019 457381 150 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy-Cigr 216860 217411 329 - . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX DNA_TcMar-Marin 41806 42411 196 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_CR1 1152289 1152885 306 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy 202236 202604 165 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy 202794 203351 221 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy 203842 203952 22 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 66837 67193 151 - . . . . . -1 -1 -1 . . . C33378 WUBlastX LTR_Ngaro 9990 10124 20 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 116754 116981 45 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1-Tx1 868941 868991 27 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1-Tx1 869039 869425 207 - . . . . . -1 -1 -1 . . . scaffold215 WUBlastX LINE_RTE-BovB 156390 156479 87 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold321 WUBlastX LINE_RTE-X 511912 512292 161 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_L1-Tx1 44215 44361 44 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1-Tx1 260384 260689 53 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LTR_Ngaro 106684 107058 161 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold471 WUBlastX LTR_Gypsy 349742 349840 24 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Gypsy 303250 304137 56 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LTR_Gypsy 63764 64501 231 - . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_Harbinger 165478 165591 93 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_Harbinger 165669 166034 228 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_Harbinger 166064 166237 67 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX RC_Helitron 282942 283661 274 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX RC_Helitron 284862 285242 141 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1-Tx1 116889 117038 65 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1-Tx1 117199 117594 155 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1-Tx1 117806 118075 22 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1-Tx1 118062 118196 58 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1-Tx1 120862 121695 123 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold1858 WUBlastX LINE_L1-Tx1 121700 121972 86 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold1858 WUBlastX LINE_L1-Tx1 121944 122102 111 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold156 WUBlastX DNA_TcMar-Tc1 775110 775289 20 + . . . . . -1 -1 -1 . . . scaffold1814 WUBlastX LTR_Ngaro 78990 79463 272 - . . . . . -1 -1 -1 . . . scaffold1814 WUBlastX LTR_Ngaro 79609 79677 38 - . . . . . -1 -1 -1 . . . scaffold1814 WUBlastX LTR_Ngaro 79796 79954 22 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_L1-Tx1 181275 182384 291 - . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LINE_L1-Tx1 95704 96765 241 + . . . . . -1 -1 -1 . . . scaffold122 WUBlastX DNA_TcMar-Tc1 53559 54542 355 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L1 269567 270172 187 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_L2 430815 431597 23 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; scaffold469 WUBlastX LTR_Gypsy 186293 187090 450 + . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LTR_Gypsy 29688 29801 22 + . . . . . -1 -1 -1 . . . scaffold161 WUBlastX DNA_hAT-Tip100 700 1023 131 - . . . . . -1 -1 -1 . . . scaffold161 WUBlastX DNA_hAT-Tip100 1023 1394 160 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 557243 558085 403 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold267 WUBlastX LINE_CR1 39937 40134 31 - . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_Sola 23696 23917 136 + . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1-Tx1 165715 165864 29 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 15012 15059 21 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Ngaro 261818 262213 153 + . . . . . -1 -1 -1 . . . scaffold27654 WUBlastX DNA_IS4EU 3401 3574 44 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_IS4EU 38066 39070 379 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_RTE-X 448141 448302 57 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LTR_DIRS 61438 62229 305 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_DIRS 12369 12809 246 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_DIRS 12802 13359 156 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_L2 464587 465387 367 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 68039 68662 111 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 87599 87763 38 + . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-X 26722 27624 400 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_RTE-X 441660 441932 139 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-X 554405 554479 20 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 555050 555262 123 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 553967 554314 56 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 554529 554972 232 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold441 WUBlastX LTR_DIRS 46110 46304 107 - . . . . . -1 -1 -1 . . . scaffold441 WUBlastX LTR_DIRS 46319 47479 256 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-X 868595 868981 54 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 101029 101319 170 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 102027 102317 119 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX DNA_TcMar-Tc1 121844 122305 260 + . . . . . -1 -1 -1 . . . scaffold1566 WUBlastX LTR_Pao 6480 6770 179 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 44509 45054 360 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 45197 45421 52 + . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LTR_Ngaro 177346 178839 372 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 637864 638829 395 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 84800 85438 161 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_L1-Tx1 86851 87903 387 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1-Tx1 196254 196424 53 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1-Tx1 196938 197288 223 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L2 1229484 1229582 22 + . . scaffold601 GLEAN mRNA 1228306 1237789 1 - . ID=CGI_10026862; scaffold502 WUBlastX LINE_RTE-X 145467 146270 191 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_DIRS 128435 128872 244 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_DIRS 128824 129363 139 - . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Ngaro 11733 12734 332 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_TcMar-Tc1 651705 652496 289 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Pao 220879 220986 28 + . . scaffold1448 GLEAN mRNA 205659 222787 0.97529 + . ID=CGI_10011856; scaffold3 WUBlastX LTR_DIRS 461426 462406 274 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Gypsy 26548 26805 108 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_Harbinger 202247 202429 78 - . . . . . -1 -1 -1 . . . scaffold858 WUBlastX LINE_RTE-X 6751 7284 79 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 115610 115681 27 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX DNA_Sola 226134 227087 390 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LINE_L2 355673 357013 431 - . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX LTR_DIRS 30132 30233 52 - . . . . . -1 -1 -1 . . . scaffold33832 WUBlastX LTR_Ngaro 3182 4390 336 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_DIRS 121964 122038 40 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX DNA_Harbinger 20696 20866 85 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1-Tx1 9188 9646 140 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1-Tx1 9624 10097 252 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_RTE-X 99720 100376 291 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_RTE-X 445157 446854 425 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_RTE-X 63958 64650 322 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Zator 169652 170188 54 + . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LTR_Gypsy 352532 352774 127 - . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LTR_Gypsy 157266 157439 65 + . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_IS4EU 147078 147242 61 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 589878 590153 36 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_TcMar-Fot1 141536 141781 134 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_Penelope 645741 647189 421 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-BovB 46751 46960 116 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-BovB 46952 47218 43 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 380563 380868 83 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_TcMar-Tc1 175921 176052 80 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_TcMar-Tc1 176097 176726 222 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; C26626 WUBlastX LTR_Pao 3007 4071 449 - . . . . . -1 -1 -1 . . . C31370 WUBlastX LINE_L2 6104 6592 358 + . . . . . -1 -1 -1 . . . C29022 WUBlastX DNA_Harbinger 4294 4512 143 - . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1-Tx1 63510 63722 39 - . . . . . -1 -1 -1 . . . scaffold34888 WUBlastX LINE_L1-Tx1 7973 8818 58 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-BovB 369573 369776 148 + . . . . . -1 -1 -1 . . . scaffold42566 WUBlastX LINE_RTE-BovB 40060 40680 222 - . . . . . -1 -1 -1 . . . scaffold1052 WUBlastX LINE_RTE-X 75979 77055 367 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold1204 WUBlastX LTR_Pao 37639 37728 23 + . . scaffold1204 GLEAN mRNA 17672 38672 0.500149 - . ID=CGI_10009804; scaffold37668 WUBlastX LTR_DIRS 37687 38193 177 + . . . . . -1 -1 -1 . . . scaffold37668 WUBlastX LTR_DIRS 38132 38626 279 + . . . . . -1 -1 -1 . . . scaffold42364 WUBlastX LINE_CR1-L2 76019 76240 106 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold209 WUBlastX LTR_Pao 251350 251964 516 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; C34122 WUBlastX LTR_Gypsy-Gmr1 12016 12513 310 - . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LINE_L1 62946 63968 434 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_Penelope 357413 357541 50 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_TcMar-Pogo 212921 213685 275 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX DNA_Maverick 229104 230204 435 + . . . . . -1 -1 -1 . . . scaffold41664 WUBlastX LTR_Pao 108848 109207 21 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LTR_Ngaro 180784 180903 41 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy 44184 44291 21 - . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX LTR_Gypsy 150089 150118 24 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; C32888 WUBlastX DNA_PiggyBac 7034 8248 405 - . . . . . -1 -1 -1 . . . C23786 WUBlastX LINE_RTE-X 1404 1805 242 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 39842 40195 149 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 648173 648724 231 - . . . . . -1 -1 -1 . . . scaffold34910 WUBlastX LTR_Gypsy 3687 3968 48 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 413871 414173 42 + . . . . . -1 -1 -1 . . . scaffold1458 WUBlastX LTR_Ngaro 2112 3371 440 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Ngaro 11721 12005 21 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 87466 87642 23 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX DNA_Kolobok 230894 231106 77 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold1772 WUBlastX LINE_RTE-X 359290 359934 86 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_DIRS 185655 186605 460 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LINE_L1-Tx1 40701 41153 128 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold70 WUBlastX LTR_Gypsy 584125 584904 196 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 157906 159177 523 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX DNA_Maverick 350381 350761 253 - . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_RTE-X 35411 35743 66 - . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_RTE-X 36380 36568 81 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_hAT 636481 638091 509 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX LTR_Gypsy 59503 59739 51 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 232748 234160 255 + . . . . . -1 -1 -1 . . . C31156 WUBlastX DNA_hAT-Ac 2313 2459 57 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_Penelope 717627 718523 229 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_L1 175096 175128 20 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_RTE-X 143596 144864 410 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_TcMar-Pogo 958126 959520 528 + . . scaffold1301 GLEAN mRNA 940827 961246 0.536299 + . ID=CGI_10027751; scaffold471 WUBlastX LTR_Gypsy 381151 383055 258 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_L2 49503 50549 467 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy-Cigr 330671 331459 97 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 38937 39635 416 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 499117 499305 103 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_DIRS 65879 66241 256 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L2 123191 123322 46 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX RC_Helitron 174865 176157 398 - . . . . . -1 -1 -1 . . . scaffold38290 WUBlastX DNA_IS4EU 8799 8963 40 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 648151 648921 119 + . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L1-Tx1 16286 16510 23 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold42490 WUBlastX LINE_L1-Tx1 62952 63140 25 - . . . . . -1 -1 -1 . . . scaffold33360 WUBlastX LINE_L2 946 1761 376 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy 81579 81761 44 + . . . . . -1 -1 -1 . . . scaffold33082 WUBlastX LINE_RTE-X 6330 6572 130 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold1656 WUBlastX LINE_RTE-X 27171 28457 418 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX LINE_RTE-X 112976 113470 289 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX LINE_RTE-X 113860 113976 57 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX LINE_RTE-X 114002 114394 197 + . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX LTR_Gypsy-Cigr 60969 61595 227 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 55819 57846 386 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 126535 127086 532 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Ngaro 83782 84510 526 - . . scaffold1634 GLEAN mRNA 82464 85496 0.992943 + . ID=CGI_10005152; scaffold804 WUBlastX LTR_Pao 303204 304151 594 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 352742 353101 102 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 381059 381589 81 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX DNA_TcMar-Pogo 234753 235286 241 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX DNA_TcMar-Pogo 235357 235566 159 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_RTE-X 91358 92065 489 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 11314 12147 481 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_TcMar-Tc1 103713 103808 44 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_TcMar-Tc1 104703 105176 93 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_L2 753146 754159 465 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_L2 754195 754407 22 + . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LTR_Gypsy 69013 69225 74 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Gypsy 7895 9433 512 + . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LTR_Gypsy 351075 351485 53 - . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LTR_Gypsy 5149 5856 458 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold126 WUBlastX LTR_Gypsy 572405 574615 543 - . . . . . -1 -1 -1 . . . scaffold34894 WUBlastX LINE_Penelope 16202 16405 57 - . . . . . -1 -1 -1 . . . scaffold224 WUBlastX DNA_TcMar-Tc1 53274 53648 211 - . . scaffold224 GLEAN mRNA 41298 72438 0.99912 - . ID=CGI_10003616; scaffold772 WUBlastX LTR_Gypsy 437820 437882 44 + . . . . . -1 -1 -1 . . . scaffold29372 WUBlastX LTR_Ngaro 1506 2138 412 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_Kolobok-IS4 445715 445966 35 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_Kolobok-IS4 446308 446397 22 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 384558 384614 30 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 384730 384948 108 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 386125 386361 46 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 386364 386702 201 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 134962 135528 253 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 136697 137377 233 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1132 WUBlastX DNA_hAT-Tip100 762227 762814 315 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy 169414 170139 90 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold517 WUBlastX LINE_L1-Tx1 199771 200259 174 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX LINE_L1-Tx1 200306 200857 349 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold1754 WUBlastX LINE_L1-Tx1 128611 129000 220 + . . scaffold1754 GLEAN mRNA 124608 131066 0.788238 + . ID=CGI_10009580; scaffold1754 WUBlastX LINE_L1-Tx1 128991 129488 99 + . . scaffold1754 GLEAN mRNA 124608 131066 0.788238 + . ID=CGI_10009580; scaffold1754 WUBlastX LINE_L1-Tx1 129491 130315 49 + . . scaffold1754 GLEAN mRNA 124608 131066 0.788238 + . ID=CGI_10009580; scaffold1024 WUBlastX DNA_En-Spm 150670 150819 78 - . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LTR_Gypsy 155820 155909 37 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX DNA_IS4EU 23410 24513 520 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_Sola 97461 98078 315 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_DIRS 462445 462861 198 - . . . . . -1 -1 -1 . . . scaffold42364 WUBlastX LINE_L2 74842 76011 277 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_L2 76007 76186 110 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold1262 WUBlastX DNA_Kolobok-IS4 515085 515174 39 - . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold1262 WUBlastX DNA_Kolobok-IS4 515844 515981 40 - . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold393 WUBlastX LTR_Gypsy 993063 993839 55 + . . . . . -1 -1 -1 . . . scaffold39744 WUBlastX LINE_L1-Tx1 24771 26195 469 + . . . . . -1 -1 -1 . . . scaffold34356 WUBlastX LTR_Ngaro 915 1526 346 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_Maverick 325152 325892 458 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold524 WUBlastX DNA_Maverick 401542 402051 238 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 53540 54175 491 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_RTE-BovB 97201 98742 442 - . . . . . -1 -1 -1 . . . scaffold31388 WUBlastX DNA_Zator 5151 5375 29 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold1132 WUBlastX LTR_Pao 753455 754069 154 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Gypsy 178671 179414 606 - . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-X 317476 317757 110 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 526937 527332 234 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold42166 WUBlastX LINE_RTE-X 8710 9231 66 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LTR_Pao 272948 273148 55 + . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L1 3190 3498 78 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 846073 847173 511 + . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LINE_RTE-X 118400 118726 74 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 129661 129768 74 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 131046 131423 79 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LINE_L2 707053 708177 488 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_CR1-L2 971522 971854 50 + . . scaffold211 GLEAN mRNA 954777 972416 0.999996 - . ID=CGI_10026971; scaffold408 WUBlastX LINE_Penelope 718356 718607 41 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 588165 588800 68 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L1-Tx1 483426 483692 181 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold500 WUBlastX LINE_CR1 38103 38759 272 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LTR_Gypsy 757705 758193 75 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Gypsy 114298 114342 20 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold1863 WUBlastX DNA_Harbinger 180882 181238 240 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX DNA_Harbinger 181315 181677 362 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX DNA_Harbinger 182078 182191 47 - . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LINE_L1 18167 18421 101 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold925 WUBlastX DNA_Sola 282772 282957 76 + . . scaffold925 GLEAN mRNA 265784 299058 0.996279 - . ID=CGI_10017423; scaffold1383 WUBlastX LINE_L1-Tx1 11589 11804 37 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Pao 1274085 1274642 136 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX DNA_hAT 297789 298679 436 + . . scaffold57 GLEAN mRNA 297762 301894 1 + . ID=CGI_10020550; scaffold57 WUBlastX DNA_hAT 299319 299462 90 + . . scaffold57 GLEAN mRNA 297762 301894 1 + . ID=CGI_10020550; scaffold57 WUBlastX DNA_hAT 299872 300048 103 + . . scaffold57 GLEAN mRNA 297762 301894 1 + . ID=CGI_10020550; scaffold43956 WUBlastX LTR_Pao 131638 131805 45 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 132336 132791 115 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 301982 302326 150 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_L2 235833 236582 322 - . . . . . -1 -1 -1 . . . C33024 WUBlastX LINE_L1-Tx1 2596 2679 38 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_L1-Tx1 509282 511066 408 + . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold1 WUBlastX LINE_L1-Tx1 112992 114629 322 - . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX LTR_Ngaro 73642 73731 42 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LTR_Gypsy-Cigr 324038 324148 106 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 10608 11027 66 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold43 WUBlastX DNA_IS4EU 1672 2625 579 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Ac 789195 790691 559 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LINE_Penelope 93884 95410 542 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 589611 590345 418 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_RTE-X 54512 55393 397 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold556 WUBlastX LINE_L1 35718 35921 26 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_L1-Tx1 170676 172796 439 - . . . . . -1 -1 -1 . . . scaffold42566 WUBlastX LINE_RTE-BovB 39528 39626 36 - . . . . . -1 -1 -1 . . . scaffold42566 WUBlastX LINE_RTE-BovB 40731 41795 358 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 192950 193138 31 - . . . . . -1 -1 -1 . . . scaffold661 WUBlastX LINE_L1-Tx1 29794 30768 186 + . . . . . -1 -1 -1 . . . C19752 WUBlastX LTR_Gypsy 6 770 763 - . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Ngaro 7959 8159 106 - . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_Gypsy 93942 94094 34 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1 1832157 1833128 485 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_L1-Tx1 530080 531081 560 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 368622 368834 26 - . . scaffold1322 GLEAN mRNA 366517 374727 0.833191 + . ID=CGI_10019476; scaffold1883 WUBlastX LINE_RTE-X 36529 37599 427 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Ngaro 299773 300087 143 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Ngaro 300089 300463 191 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Ngaro 300508 300810 199 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Ngaro 300807 301094 191 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L1-Tx1 236100 236366 42 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_Gypsy 451931 452119 33 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 452415 453395 478 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold43932 WUBlastX LINE_R2-Hero 328736 328873 90 - . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LINE_R2-Hero 330365 330598 111 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-X 28520 29413 538 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1 85570 86025 93 + . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LTR_DIRS 66283 67038 630 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 9068 9271 151 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 9621 10682 239 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_PiggyBac 90919 91095 84 + . . scaffold1703 GLEAN mRNA 88691 94932 1 + . ID=CGI_10023040; scaffold1703 WUBlastX DNA_PiggyBac 92389 93513 516 + . . scaffold1703 GLEAN mRNA 88691 94932 1 + . ID=CGI_10023040; scaffold145 WUBlastX LTR_Gypsy 108895 109083 149 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_TcMar-Tc1 367315 368316 598 + . . scaffold267 GLEAN mRNA 365338 373963 1 + . ID=CGI_10018307; scaffold61 WUBlastX DNA_Academ 164918 165574 152 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold1281 WUBlastX LTR_DIRS 8724 9113 195 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1328 WUBlastX LTR_Gypsy 64074 64340 210 - . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_L1-Tx1 129332 129646 161 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 130093 131172 310 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 132108 132377 119 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 132440 132853 30 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold43150 WUBlastX DNA_Sola 54905 55054 44 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX DNA_Sola 57057 57635 253 - . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Pao 47642 47797 77 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LTR_Gypsy 13310 15094 626 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 242283 242753 78 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 162100 162411 111 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy 565979 566086 30 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 201222 201755 117 - . . . . . -1 -1 -1 . . . scaffold1261 WUBlastX LINE_L1 19613 19930 54 - . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LTR_Gypsy 110761 112032 552 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 135876 136718 266 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold1714 WUBlastX LTR_Gypsy 27971 29161 515 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_L1-Tx1 16482 16886 49 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_RTE-X 250894 252309 659 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_TcMar-Pogo 580885 582315 782 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 58826 59074 147 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 59061 60338 479 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_RTE-X 130243 130335 34 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold198 WUBlastX LTR_DIRS 562112 562402 67 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_DIRS 562401 564488 563 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 231287 231964 45 + . . . . . -1 -1 -1 . . . scaffold40526 WUBlastX DNA_IS4EU 78613 79986 709 - . . . . . -1 -1 -1 . . . scaffold43786 WUBlastX LINE_RTE-X 322340 323839 637 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_DIRS 251259 251483 48 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold626 WUBlastX LTR_Gypsy 382685 382951 110 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 424897 426141 601 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold664 WUBlastX LTR_DIRS 316797 317504 153 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_DIRS 317698 318954 521 + . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LTR_Gypsy 275746 275856 66 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L2 3334 5007 597 - . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LTR_Gypsy 27000 27161 51 - . . . . . -1 -1 -1 . . . scaffold1652 WUBlastX RC_Helitron 230380 231489 87 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold496 WUBlastX LTR_Gypsy 757861 758193 76 + . . . . . -1 -1 -1 . . . scaffold43194 WUBlastX LINE_RTE-X 205999 207528 606 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy 195868 196104 25 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LTR_Gypsy 122380 123129 106 - . . . . . -1 -1 -1 . . . scaffold43396 WUBlastX LTR_Ngaro 236876 237421 334 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold247 WUBlastX LINE_RTE-X 349302 350774 669 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LTR_Pao 317671 319956 831 - . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy 48518 48697 100 + . . . . . -1 -1 -1 . . . scaffold38116 WUBlastX LTR_Gypsy 15399 15539 90 - . . . . . -1 -1 -1 . . . scaffold38116 WUBlastX LTR_Gypsy 15639 15872 210 - . . . . . -1 -1 -1 . . . scaffold36356 WUBlastX LINE_RTE-BovB 27315 28187 281 + . . . . . -1 -1 -1 . . . scaffold36356 WUBlastX LINE_RTE-BovB 29042 29860 131 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Zator 217578 217982 97 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Zator 218236 219123 399 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Zator 219129 219674 234 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Zator 219650 219847 57 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Zator 219925 220353 53 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 264433 264513 66 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 265444 265788 160 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 266532 266780 191 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 757255 758118 463 + . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy 48443 48703 66 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 479566 480216 176 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold169 WUBlastX LTR_Gypsy 710160 710609 148 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX RC_Helitron 51780 52943 725 + . . scaffold323 GLEAN mRNA 43017 58412 0.999949 + . ID=CGI_10009773; scaffold323 WUBlastX RC_Helitron 52946 53500 167 + . . scaffold323 GLEAN mRNA 43017 58412 0.999949 + . ID=CGI_10009773; scaffold48 WUBlastX LINE_L1-Tx1 142480 142644 59 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 142653 143621 361 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 143967 144860 194 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Gypsy 158999 162100 775 + . . . . . -1 -1 -1 . . . scaffold42776 WUBlastX LINE_RTE-X 187118 188791 716 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy 48923 49204 189 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy 49312 49452 65 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy 50341 51135 352 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LINE_RTE-BovB 40556 41014 252 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LINE_RTE-BovB 42276 42395 50 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LINE_RTE-BovB 42840 43100 153 + . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Ngaro 149739 150095 225 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Ngaro 150079 150393 91 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_CR1-L2 124308 126098 552 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_RTE-X 4337 4966 349 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-X 55736 56131 194 + . . . . . -1 -1 -1 . . . C28298 WUBlastX LINE_RTE-X 2 1309 753 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 78616 79113 45 - . . . . . -1 -1 -1 . . . scaffold315 WUBlastX DNA_Harbinger 428180 428236 24 + . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold1209 WUBlastX LTR_Pao 80239 80658 113 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LTR_Pao 80828 81295 314 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LTR_Pao 81256 81858 295 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy 71444 72352 114 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold443 WUBlastX LTR_Copia 706625 706690 23 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Copia 488693 488917 63 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Copia 307278 307436 20 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LTR_Copia 756042 756230 33 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LTR_Pao 772709 772876 64 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Pao 369982 370149 64 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_TcMar-Marin 306060 306275 72 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_CR1 604393 604449 26 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LINE_CR1-L2 305100 305528 64 + . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX LINE_CR1 146684 146941 36 + . . scaffold43954 GLEAN mRNA 139153 149832 0.999998 - . ID=CGI_10014576; scaffold1583 WUBlastX LINE_CR1-L2 729793 729849 38 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 857262 857639 88 + . . . . . -1 -1 -1 . . . scaffold38458 WUBlastX LINE_CR1-L2 56099 56332 51 + . . scaffold38458 GLEAN mRNA 56051 56269 0.999372 + . ID=CGI_10002785; scaffold922 WUBlastX LINE_CR1 2138 2260 32 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_CR1 58088 58180 28 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_CR1 58657 58803 48 - . . . . . -1 -1 -1 . . . scaffold34740 WUBlastX LINE_L2 8009 8218 32 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 231493 231777 41 - . . . . . -1 -1 -1 . . . C28958 WUBlastX LTR_Gypsy 3637 4158 79 + . . . . . -1 -1 -1 . . . scaffold1126 WUBlastX LTR_Gypsy 2438 2638 67 - . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Gypsy 33215 34165 83 - . . scaffold40440 GLEAN mRNA 16484 36402 0.811713 + . ID=CGI_10004142; scaffold145 WUBlastX LTR_Gypsy 802282 802428 25 + . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Gypsy 13010 14029 52 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 83740 84354 61 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; C31762 WUBlastX LINE_L2 2562 2846 92 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_DIRS 564387 564455 20 - . . scaffold408 GLEAN mRNA 551872 569972 0.499918 - . ID=CGI_10023249; scaffold31538 WUBlastX LTR_Gypsy 572 1375 35 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 1073929 1074060 25 - . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LTR_DIRS 127606 127719 24 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 535884 536078 49 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 536051 536221 29 - . . . . . -1 -1 -1 . . . scaffold34574 WUBlastX LTR_Ngaro 12649 12780 75 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Ngaro 337236 337409 77 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 218898 218942 22 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 57035 57259 30 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Gypsy 753409 753513 24 + . . . . . -1 -1 -1 . . . scaffold310 WUBlastX LTR_Gypsy 14605 14970 75 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Gypsy 87234 87443 63 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX DNA_Harbinger 764576 764770 63 - . . . . . -1 -1 -1 . . . scaffold707 WUBlastX DNA_Harbinger 43628 43801 52 + . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold368 WUBlastX DNA_Harbinger 385864 386286 77 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy 175000 175185 86 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX RC_Helitron 335925 336248 96 - . . . . . -1 -1 -1 . . . scaffold1876 WUBlastX DNA_Helitron 96779 97228 40 - . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LINE_R2-Hero 73748 73924 67 - . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX RC_Helitron 48794 49081 39 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_Helitron 572790 572885 34 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_hAT-Tip100 358434 358847 52 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold1143 WUBlastX DNA_IS4EU 123287 123934 71 - . . scaffold1143 GLEAN mRNA 121955 124624 0.796524 - . ID=CGI_10009141; scaffold1199 WUBlastX DNA_IS4EU 106604 107008 62 + . . scaffold1199 GLEAN mRNA 106273 107830 0.490912 + . ID=CGI_10005927; scaffold780 WUBlastX LINE_R2-Hero 681061 681237 67 + . . . . . -1 -1 -1 . . . C26566 WUBlastX DNA_Kolobok-IS4 2969 3202 62 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_Kolobok-IS4 340864 341097 62 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_TcMar-Tc1 116865 117125 50 + . . scaffold535 GLEAN mRNA 111373 154699 0.592399 + . ID=CGI_10020283; scaffold1512 WUBlastX LINE_L1 76674 76856 56 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_Penelope 191620 191886 44 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_Penelope 48190 48525 47 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LINE_Penelope 53544 53774 52 - . . scaffold772 GLEAN mRNA 32739 66911 0.999897 - . ID=CGI_10016575; scaffold1037 WUBlastX LINE_CR1 317470 317721 68 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX DNA_TcMar-Pogo 112871 112945 36 + . . . . . -1 -1 -1 . . . scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 50046 66 - . . scaffold40068 GLEAN mRNA 33497 57280 0.493966 - . ID=CGI_10003835; scaffold1863 WUBlastX DNA_TcMar-Marin 71033 71149 46 + . . scaffold1863 GLEAN mRNA 64523 72904 0.332642 - . ID=CGI_10016679; scaffold719 WUBlastX DNA_TcMar-Marin 65576 65782 80 + . . . . . -1 -1 -1 . . . scaffold91 WUBlastX DNA_TcMar-Marin 67858 68187 50 + . . . . . -1 -1 -1 . . . scaffold36698 WUBlastX DNA_TcMar-Marin 2417 2635 36 - . . scaffold36698 GLEAN mRNA 1616 6984 0.999949 - . ID=CGI_10002014; scaffold1865 WUBlastX DNA_TcMar-Marin 140543 140647 73 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_TcMar-Marin 384849 385052 87 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold1760 WUBlastX LINE_L1-Tx1 35617 35811 81 + . . scaffold1760 GLEAN mRNA 10471 43998 0.994763 + . ID=CGI_10002757; C29052 WUBlastX DNA_Kolobok 798 947 56 - . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX DNA_Kolobok-Hyd 474564 474962 21 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1 27131 27226 54 - . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX LINE_L1 49013 49201 58 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L1 388169 388531 36 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_L1 643678 643725 25 - . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LINE_L1 129833 130153 55 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1 1702681 1702746 21 + . . . . . -1 -1 -1 . . . scaffold34780 WUBlastX LINE_L1 20303 20707 49 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_Penelope 9181 9351 66 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_Penelope 291866 292015 40 + . . . . . -1 -1 -1 . . . scaffold194 WUBlastX LINE_Penelope 92658 93170 45 + . . scaffold194 GLEAN mRNA 88923 103343 0.864939 + . ID=CGI_10011059; scaffold42584 WUBlastX LINE_RTE-BovB 134076 134117 24 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_RTE-BovB 171396 171530 54 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_RTE-BovB 171514 171576 29 + . . . . . -1 -1 -1 . . . scaffold37554 WUBlastX LINE_RTE-X 397 474 32 + . . . . . -1 -1 -1 . . . scaffold40050 WUBlastX LINE_RTE-X 7277 7567 36 - . . . . . -1 -1 -1 . . . scaffold1231 WUBlastX LINE_RTE-BovB 105744 105995 65 + . . scaffold1231 GLEAN mRNA 79934 107425 0.93438 + . ID=CGI_10004703; scaffold53 WUBlastX LINE_CR1 1070318 1070461 52 - . . . . . -1 -1 -1 . . . scaffold1886 WUBlastX DNA_PiggyBac 175229 175384 43 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Maverick 47960 48070 64 - . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX DNA_Maverick 46717 47217 81 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Maverick 337626 337835 42 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Maverick 337849 338037 45 - . . . . . -1 -1 -1 . . . scaffold1207 WUBlastX LINE_RTE-BovB 3719 3931 50 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_RTE-X 20667 20744 24 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold531 WUBlastX LINE_RTE-X 19883 20185 24 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_RTE-X 12125 12382 33 - . . . . . -1 -1 -1 . . . scaffold1509 WUBlastX LINE_RTE-X 154565 154846 52 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_RTE-X 112587 113015 68 - . . scaffold1574 GLEAN mRNA 112677 113012 0.965913 - . ID=CGI_10016322; scaffold1711 WUBlastX LINE_RTE-X 23210 23452 55 + . . scaffold1711 GLEAN mRNA 19250 25931 0.598612 + . ID=CGI_10015595; scaffold1877 WUBlastX LINE_RTE-X 123569 123844 73 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_RTE-X 297143 297364 65 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_RTE-X 637877 638035 56 + . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_RTE-X 222179 222394 70 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_RTE-X 179906 180088 87 - . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LINE_RTE-X 129240 129413 45 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 616445 616567 24 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_RTE-X 506029 506211 58 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold854 WUBlastX LINE_RTE-X 613343 613714 33 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 139794 140120 37 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 367226 367339 25 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_Sola 50828 51052 52 - . . scaffold43008 GLEAN mRNA 50609 51714 0.543138 - . ID=CGI_10008460; scaffold43008 WUBlastX DNA_Sola 51598 51723 39 - . . scaffold43008 GLEAN mRNA 50609 51714 0.543138 - . ID=CGI_10008460; scaffold1623 WUBlastX DNA_Sola 12520 12774 52 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX DNA_Sola 13035 13094 20 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold852 WUBlastX DNA_Sola 132341 132523 56 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX DNA_Sola 85120 85500 64 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX DNA_Zator 37489 37869 52 - . . scaffold1189 GLEAN mRNA 28380 51228 1 + . ID=CGI_10023793; scaffold1054 WUBlastX LINE_L1-Tx1 179182 179442 29 - . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_L1-Tx1 143333 143605 54 - . . . . . -1 -1 -1 . . . scaffold34888 WUBlastX LINE_DRE 10148 10201 25 + . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LINE_L1-Tx1 29409 29621 70 - . . . . . -1 -1 -1 . . . scaffold43664 WUBlastX LINE_L1-Tx1 213728 213916 36 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold1875 WUBlastX LINE_CR1 149680 150108 68 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 746152 746337 82 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LINE_L2 148833 149387 77 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_CR1 4848 4898 22 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_L2 38776 39213 44 - . . . . . -1 -1 -1 . . . scaffold43240 WUBlastX LINE_CR1-L2 96055 96408 52 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_CR1 57030 57086 26 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_CR1-L2 1020577 1020642 34 - . . . . . -1 -1 -1 . . . scaffold38400 WUBlastX LINE_CR1-L2 6182 6484 92 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_CR1-L2 680040 680354 56 + . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold664 WUBlastX LINE_CR1-L2 191562 191654 61 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_Jockey 434695 434877 66 - . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX LINE_LOA 39700 39825 25 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold288 WUBlastX LTR_Gypsy 230314 230490 24 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LTR_Copia 39789 39905 21 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Pao 571614 571871 29 - . . scaffold1403 GLEAN mRNA 570715 576701 0.734339 - . ID=CGI_10020184; scaffold412 WUBlastX LTR_Ngaro 533481 533573 32 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Ngaro 37256 37744 25 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LTR_Ngaro 159817 160038 70 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_DIRS 253142 253309 81 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold1719 WUBlastX LTR_Pao 321323 321382 20 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_L2 506618 506713 57 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_RTE-BovB 45948 46133 73 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LTR_Gypsy 223736 224317 27 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Gypsy 321397 321726 59 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 149196 150218 59 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LTR_Gypsy 120277 120810 37 + . . . . . -1 -1 -1 . . . scaffold41766 WUBlastX LTR_Gypsy 32206 32490 69 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold241 WUBlastX DNA_Kolobok-IS4 264874 265089 25 + . . . . . -1 -1 -1 . . . C10805 WUBlastX LINE_I 1 168 100 - . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_I 33444 33857 53 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_I 33444 33857 53 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; C24440 WUBlastX DNA_IS4EU 229 1035 44 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_IS4EU 329777 330070 61 - . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX DNA_hAT-Ac 256790 256885 31 + . . scaffold1000 GLEAN mRNA 254688 266328 0.650465 + . ID=CGI_10013084; scaffold43314 WUBlastX DNA_hAT-hATw 155945 156235 57 - . . . . . -1 -1 -1 . . . scaffold38370 WUBlastX LTR_Gypsy 43463 44242 39 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_Harbinger 1218970 1219668 33 - . . scaffold142 GLEAN mRNA 1216819 1221683 0.999676 + . ID=CGI_10026797; scaffold286 WUBlastX DNA_Harbinger 444857 445021 66 - . . scaffold286 GLEAN mRNA 433158 447481 0.525246 + . ID=CGI_10015974; scaffold90 WUBlastX DNA_Harbinger 258151 258264 26 - . . scaffold90 GLEAN mRNA 256704 258219 0.982419 + . ID=CGI_10015169; scaffold1237 WUBlastX LTR_Gypsy 110384 110476 24 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy 273954 274214 30 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 30579 31487 62 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1 809652 809927 100 - . . . . . -1 -1 -1 . . . scaffold35960 WUBlastX LINE_L1-Tx1 24449 24613 84 - . . . . . -1 -1 -1 . . . C33658 WUBlastX LINE_L1-Tx1 2654 3028 58 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_Kolobok-Hyd 213247 213768 25 + . . scaffold448 GLEAN mRNA 213388 215689 0.999613 + . ID=CGI_10024936; C29052 WUBlastX DNA_Kolobok 1424 1534 29 - . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX LINE_L1 71558 71698 81 + . . . . . -1 -1 -1 . . . scaffold39960 WUBlastX LINE_L1 81803 82405 42 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_L1 441936 442538 45 - . . scaffold583 GLEAN mRNA 412825 450410 0.995957 - . ID=CGI_10023625; scaffold36034 WUBlastX LINE_L1 14079 14681 42 - . . . . . -1 -1 -1 . . . scaffold38078 WUBlastX LINE_L1 50853 51455 42 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_TcMar-Marin 655994 656299 43 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold43258 WUBlastX DNA_TcMar-Marin 93144 93227 28 - . . scaffold43258 GLEAN mRNA 90747 124672 0.523441 + . ID=CGI_10009633; scaffold563 WUBlastX DNA_TcMar-Marin 505524 505829 65 - . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold1447 WUBlastX LINE_Penelope 48875 49267 64 - . . scaffold1447 GLEAN mRNA 11511 50547 0.469757 + . ID=CGI_10013812; scaffold36 WUBlastX DNA_NOF 7095 7286 47 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold678 WUBlastX LINE_RTE-X 789761 789868 47 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 185117 185272 63 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold57 WUBlastX LINE_RTE-X 36842 36892 23 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-BovB 296310 296522 95 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_Maverick 409222 409422 85 - . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX LTR_ERV1 260650 260856 66 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold41598 WUBlastX DNA_PiggyBac 74305 74463 52 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold288 WUBlastX DNA_Maverick 234101 234421 74 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 82758 83015 102 - . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LINE_RTE-X 4960 5112 31 - . . scaffold41210 GLEAN mRNA 409 13857 0.999993 + . ID=CGI_10004798; scaffold631 WUBlastX LINE_RTE-X 325450 325578 71 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-X 110392 110673 59 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 704777 705217 27 + . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_hAT-Tip100 26956 27165 81 - . . scaffold40246 GLEAN mRNA 25998 27045 0.997233 - . ID=CGI_10003986; scaffold1873 WUBlastX LINE_L1-Tx1 72815 73003 58 - . . scaffold1873 GLEAN mRNA 66556 75534 0.967714 + . ID=CGI_10009292; scaffold790 WUBlastX LINE_L1-Tx1 114242 114664 35 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_L1-Tx1 214878 215207 88 - . . . . . -1 -1 -1 . . . C2035 WUBlastX LTR_Gypsy-Troyk 1 108 89 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L1-Tx1 93001 93096 24 + . . . . . -1 -1 -1 . . . scaffold38054 WUBlastX DNA_TcMar-Tc1 40915 41148 49 - . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX DNA_hAT-Tip100 880 1137 71 + . . . . . -1 -1 -1 . . . scaffold1455 WUBlastX LTR_Gypsy 57372 58085 83 - . . scaffold1455 GLEAN mRNA 56849 64611 0.522943 - . ID=CGI_10003301; scaffold719 WUBlastX LTR_Pao 352022 352177 115 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold1423 WUBlastX DNA_hAT 195744 195989 96 - . . scaffold1423 GLEAN mRNA 194970 198353 1 - . ID=CGI_10025421; scaffold1098 WUBlastX LINE_L2 136762 137061 86 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_CR1-L2 1211117 1211278 45 + . . scaffold501 GLEAN mRNA 1202814 1224035 0.789617 + . ID=CGI_10027546; scaffold34882 WUBlastX LINE_CR1-L2 1476 1766 58 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_CR1-L2 211609 212217 37 - . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LINE_CR1 99598 99894 49 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 96497 96757 77 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy-Cigr 102678 103034 79 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 9567 10157 79 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy-Gmr1 665462 665560 50 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold960 WUBlastX LINE_L2 49692 49991 88 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Ngaro 273080 273220 23 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LTR_DIRS 44709 44771 27 + . . scaffold1241 GLEAN mRNA 33172 55862 0.858231 - . ID=CGI_10016418; scaffold1583 WUBlastX LTR_DIRS 677340 677402 27 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_DIRS 1017265 1017687 44 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold603 WUBlastX LTR_Ngaro 13090 13251 94 + . . . . . -1 -1 -1 . . . scaffold34224 WUBlastX LTR_Ngaro 13677 14129 35 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LTR_Gypsy 93367 94230 31 + . . . . . -1 -1 -1 . . . C29982 WUBlastX LTR_Gypsy 5668 6159 30 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 310089 310295 44 + . . . . . -1 -1 -1 . . . scaffold316 WUBlastX LTR_Gypsy 16635 16787 67 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold817 WUBlastX DNA_hAT-Tag1 208570 208893 33 - . . . . . -1 -1 -1 . . . scaffold1608 WUBlastX DNA_IS4EU 73544 73987 43 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_IS4EU 71238 71411 82 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold37028 WUBlastX DNA_Kolobok-IS4 6012 6617 69 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX DNA_IS4EU 186778 186984 39 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_IS4EU 15305 15619 99 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Kolobok 582748 582909 20 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Kolobok 582978 583193 54 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_MuDR 31413 31640 73 + . . scaffold20 GLEAN mRNA 25974 32204 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX DNA_MuDR 31413 31640 73 + . . scaffold20 GLEAN mRNA 28495 32289 0.880534 + . ID=CGI_10023557; scaffold1630 WUBlastX LINE_Penelope 141066 141353 50 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_ERVK 197656 197709 23 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_Penelope 977573 977905 39 + . . scaffold149 GLEAN mRNA 977738 985587 0.998126 + . ID=CGI_10025334; scaffold184 WUBlastX LINE_Jockey 346994 347044 52 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 454567 454725 97 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 454888 454932 22 - . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX DNA_TcMar-Marin 55423 55662 68 - . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX LTR_Ngaro 25040 25270 65 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold99 WUBlastX LINE_L1 68562 68648 28 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Kolobok-Hyd 83476 83703 27 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_Kolobok 22607 23281 38 + . . . . . -1 -1 -1 . . . scaffold38780 WUBlastX DNA_Kolobok 21925 22074 79 + . . scaffold38780 GLEAN mRNA 21652 22077 0.999988 + . ID=CGI_10002960; scaffold594 WUBlastX LINE_L1-Tx1 167799 168152 93 + . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX LINE_L1-Tx1 24441 24914 48 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L1-Tx1 547883 547993 49 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold595 WUBlastX LINE_RTE-BovB 12396 12788 35 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LINE_RTE-BovB 185430 185675 99 + . . scaffold42880 GLEAN mRNA 184633 197786 1 - . ID=CGI_10007998; scaffold129 WUBlastX LINE_RTE-BovB 47314 47412 41 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-BovB 310436 310738 24 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_RTE-BovB 45948 46166 67 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_RTE-BovB 244945 245235 76 + . . scaffold363 GLEAN mRNA 238043 248043 0.648316 - . ID=CGI_10019299; scaffold31538 WUBlastX DNA_Maverick 4042 4695 31 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold38054 WUBlastX DNA_TcMar-Tc1 40510 40650 59 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-X 186591 187103 57 - . . scaffold365 GLEAN mRNA 162342 187868 0.996603 - . ID=CGI_10022722; scaffold601 WUBlastX LINE_RTE-X 194733 195116 47 - . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_RTE-X 553809 554033 83 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 763017 763544 74 + . . . . . -1 -1 -1 . . . scaffold41228 WUBlastX LINE_RTE-X 7501 7758 72 + . . . . . -1 -1 -1 . . . scaffold1028 WUBlastX LINE_RTE-X 42524 42757 54 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold1898 WUBlastX LINE_RTE-X 8316 8558 35 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 134297 134482 93 + . . scaffold313 GLEAN mRNA 134319 135998 0.83601 - . ID=CGI_10026584; scaffold37680 WUBlastX LINE_RTE-X 9408 9680 75 - . . . . . -1 -1 -1 . . . scaffold1226 WUBlastX LINE_L1 30935 31576 70 - . . . . . -1 -1 -1 . . . scaffold37788 WUBlastX LINE_RTE-X 42463 42732 68 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LINE_RTE-X 241203 241400 57 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc1 1080104 1080166 41 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold1337 WUBlastX DNA_TcMar-Tc1 228655 228831 37 + . . . . . -1 -1 -1 . . . scaffold371 WUBlastX DNA_TcMar-Tc1 10949 11194 56 + . . . . . -1 -1 -1 . . . scaffold43536 WUBlastX LINE_L1-Tx1 274222 274392 50 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_L1-Tx1 446040 446273 49 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_L1-Tx1 116606 116983 36 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Zator 157 261 20 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Zator 398 562 29 + . . . . . -1 -1 -1 . . . scaffold36494 WUBlastX LINE_CR1-L2 393 428 20 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_L2 411577 411807 75 + . . scaffold751 GLEAN mRNA 408046 415763 1 - . ID=CGI_10017403; scaffold593 WUBlastX LINE_L2 222081 222551 51 + . . . . . -1 -1 -1 . . . scaffold1690 WUBlastX LINE_CR1-L2 2442 2549 33 - . . . . . -1 -1 -1 . . . scaffold44064 WUBlastX LINE_CR1 214863 215270 73 + . . scaffold44064 GLEAN mRNA 201756 215782 0.297034 - . ID=CGI_10016763; scaffold70 WUBlastX DNA_hAT 923131 923715 84 + . . scaffold70 GLEAN mRNA 923086 924045 0.955608 + . ID=CGI_10024803; scaffold756 WUBlastX LTR_Gypsy 245144 245431 30 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LTR_Pao 273216 273296 34 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Penelope 996783 996881 33 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LINE_L1 18316 18675 32 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Copia 31875 32156 22 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Ngaro 1565757 1566230 34 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Ngaro 485843 486064 68 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold354 WUBlastX LTR_Ngaro 7434 7706 41 + . . . . . -1 -1 -1 . . . scaffold34224 WUBlastX LTR_Ngaro 13887 14135 93 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_L2 469086 469589 28 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L2 444954 445304 95 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LTR_Gypsy 470184 470756 66 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Gypsy-Cigr 841488 842135 33 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_Gypsy 189838 190485 92 + . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold128 WUBlastX LTR_Gypsy 281580 281801 38 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Gypsy 659796 659972 42 - . . scaffold226 GLEAN mRNA 638426 687523 0.559216 + . ID=CGI_10025370; scaffold126 WUBlastX LTR_Gypsy 271185 271526 100 + . . scaffold126 GLEAN mRNA 265266 272636 0.813518 - . ID=CGI_10019191; scaffold1575 WUBlastX LTR_Gypsy 72400 72450 22 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_hAT-Hobo 238367 238684 49 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-Ac 462083 462337 51 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_hAT-Blackja 634173 634424 66 - . . scaffold1307 GLEAN mRNA 625481 640911 0.991393 - . ID=CGI_10023775; scaffold393 WUBlastX DNA_hAT-Blackja 1191618 1191890 71 + . . scaffold393 GLEAN mRNA 1189298 1195298 0.588681 - . ID=CGI_10026931; scaffold42030 WUBlastX LTR_Gypsy 14680 14823 26 + . . scaffold42030 GLEAN mRNA 13387 15078 0.965896 + . ID=CGI_10006041; scaffold867 WUBlastX LTR_Gypsy 623066 623437 66 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 704456 704572 66 + . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_Harbinger 165466 165609 62 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Harbinger 203095 203268 64 + . . . . . -1 -1 -1 . . . C29022 WUBlastX LTR_Gypsy 2293 2511 61 + . . . . . -1 -1 -1 . . . scaffold527 WUBlastX LINE_L1 309930 310097 32 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1 539689 539952 26 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L1 1235766 1236032 41 + . . . . . -1 -1 -1 . . . scaffold37790 WUBlastX LINE_L1 44503 44631 26 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_CR1 32634 32735 23 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_L2 712814 712954 22 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX DNA_TcMar-Marin 1037253 1037450 48 - . . scaffold149 GLEAN mRNA 1029286 1055668 0.813477 - . ID=CGI_10025339; scaffold149 WUBlastX DNA_TcMar-Marin 1037802 1038020 42 - . . scaffold149 GLEAN mRNA 1029286 1055668 0.813477 - . ID=CGI_10025339; scaffold767 WUBlastX DNA_TcMar-Marin 215335 216096 34 + . . . . . -1 -1 -1 . . . scaffold685 WUBlastX DNA_P 88835 89125 95 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-BovB 734568 735497 38 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_Penelope 117115 117462 84 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX DNA_MuDR 15516 15707 44 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold410 WUBlastX LINE_RTE-X 56193 56579 47 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_RTE-X 337939 338250 53 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1737 WUBlastX LINE_RTE-X 26362 26673 53 - . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX LINE_RTE-X 73259 73363 29 + . . scaffold43676 GLEAN mRNA 61551 77121 0.553897 - . ID=CGI_10011729; scaffold43676 WUBlastX LINE_RTE-X 73375 73485 46 + . . scaffold43676 GLEAN mRNA 61551 77121 0.553897 - . ID=CGI_10011729; scaffold41648 WUBlastX DNA_Maverick 93654 93821 91 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-BovB 395343 395891 27 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_RTE-BovB 134905 135138 78 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-BovB 101409 101735 79 - . . scaffold963 GLEAN mRNA 91677 101893 1 + . ID=CGI_10015619; scaffold191 WUBlastX LINE_RTE-BovB 339388 339447 22 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_RTE-X 70821 70979 25 + . . scaffold1186 GLEAN mRNA 62909 95132 0.584728 + . ID=CGI_10010593; scaffold1186 WUBlastX LINE_RTE-X 71752 71904 40 + . . scaffold1186 GLEAN mRNA 62909 95132 0.584728 + . ID=CGI_10010593; scaffold1009 WUBlastX DNA_TcMar-Marin 246246 246428 84 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX DNA_Sola 885169 885399 43 + . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_Harbinger 163979 164125 44 + . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LINE_RTE-BovB 59680 60216 89 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold443 WUBlastX LINE_L1-Tx1 463380 463625 47 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_L1-Tx1 360405 360518 42 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX LINE_L1-Tx1 22064 22399 20 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX DNA_TcMar-Tc1 51700 51921 97 - . . scaffold1449 GLEAN mRNA 47527 52497 0.806919 - . ID=CGI_10010690; scaffold1267 WUBlastX DNA_TcMar-Tc1 258265 258363 26 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_TcMar-Tc1 411946 412383 74 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1 162117 162377 24 - . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Pao 34711 35028 35 + . . . . . -1 -1 -1 . . . C9823 WUBlastX LTR_Pao 1 153 119 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LTR_Pao 230410 231195 98 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Pao 357945 358376 110 - . . . . . -1 -1 -1 . . . scaffold148 WUBlastX DNA_Harbinger 38877 39338 26 - . . . . . -1 -1 -1 . . . C14550 WUBlastX LTR_Gypsy 164 253 57 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_Jockey 428510 428605 30 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_L2 69056 69592 68 + . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LINE_L2 171850 171954 32 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; C29348 WUBlastX LINE_L2 1608 2063 28 + . . . . . -1 -1 -1 . . . C29348 WUBlastX LINE_L2 2180 2287 42 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_CR1 1352393 1352590 59 - . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_CR1-L2 10049 10348 91 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Gypsy 841791 842144 78 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 791786 792190 127 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LTR_Gypsy 6656 7234 86 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold38292 WUBlastX LTR_Gypsy 46431 47681 118 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold1188 WUBlastX LTR_Gypsy 207571 208014 83 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold1094 WUBlastX LTR_Gypsy 588616 589203 108 + . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LTR_Gypsy 3263 3538 80 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 99598 100113 95 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L2 15217 15828 63 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Crypton 75683 75988 74 + . . scaffold524 GLEAN mRNA 75461 100375 0.53498 - . ID=CGI_10016598; scaffold574 WUBlastX LTR_DIRS 49640 50599 39 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_DIRS 251172 251504 56 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_DIRS 251829 251903 22 + . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LTR_Ngaro 78802 78972 75 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Ngaro 338402 338905 46 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Ngaro 19411 19578 25 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Gypsy 52988 53125 131 - . . scaffold1673 GLEAN mRNA 51832 54257 0.720264 - . ID=CGI_10013570; scaffold38194 WUBlastX LTR_Gypsy 49583 49897 95 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX RC_Helitron 176999 177574 71 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX RC_Helitron 501669 502472 51 - . . scaffold1362 GLEAN mRNA 501660 502067 1 - . ID=CGI_10023944; scaffold1138 WUBlastX RC_Helitron 194035 194112 26 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_I 358449 358721 54 - . . . . . -1 -1 -1 . . . scaffold40584 WUBlastX DNA_IS4EU 35449 35904 106 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_MuDR 1229012 1229992 43 - . . scaffold471 GLEAN mRNA 1226022 1238861 0.423333 - . ID=CGI_10027038; scaffold1125 WUBlastX LINE_Penelope 296665 297336 21 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; C26230 WUBlastX LINE_RTE-BovB 12 503 64 - . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_Penelope 177226 177387 42 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_Penelope 90154 90681 61 + . . scaffold1272 GLEAN mRNA 69936 97048 0.861711 + . ID=CGI_10008307; scaffold41466 WUBlastX DNA_TcMar-Fot1 37519 37677 88 - . . . . . -1 -1 -1 . . . scaffold388 WUBlastX DNA_TcMar-Marin 429660 429902 45 - . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LINE_LOA 1798 1836 20 + . . . . . -1 -1 -1 . . . scaffold1274 WUBlastX LINE_L1-Tx1 3969 4613 60 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_L1 508539 508922 80 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_L1 309294 309713 56 - . . scaffold1164 GLEAN mRNA 307222 312085 0.957199 - . ID=CGI_10013011; scaffold1740 WUBlastX LINE_L1 3115 3675 89 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L1-Tx1 669060 669629 48 - . . scaffold625 GLEAN mRNA 660953 675922 0.820405 - . ID=CGI_10023430; scaffold980 WUBlastX LINE_L1-Tx1 281652 281795 111 + . . . . . -1 -1 -1 . . . C29736 WUBlastX LINE_L1 1933 2619 79 - . . . . . -1 -1 -1 . . . scaffold1163 WUBlastX LINE_RTE-BovB 200485 200787 21 + . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold1307 WUBlastX DNA_Maverick 320083 320250 53 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy 204771 205184 124 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_PiggyBac 967774 968160 47 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_RTE-X 172741 172959 85 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 66958 67017 20 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 527647 528003 89 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold163 WUBlastX LINE_RTE-X 91315 91563 61 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_RTE-X 42447 42674 58 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_RTE-X 312201 312539 82 - . . . . . -1 -1 -1 . . . scaffold893 WUBlastX LINE_RTE-X 64642 64887 89 + . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-X 218714 218812 53 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-X 218818 218997 22 - . . . . . -1 -1 -1 . . . scaffold1485 WUBlastX LINE_RTE-X 66276 66659 88 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LINE_RTE-X 290390 290827 33 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_RTE-X 260250 260366 29 + . . scaffold1241 GLEAN mRNA 230364 272061 0.65035 - . ID=CGI_10016431; scaffold1241 WUBlastX LINE_RTE-X 260390 260518 50 + . . scaffold1241 GLEAN mRNA 230364 272061 0.65035 - . ID=CGI_10016431; scaffold1698 WUBlastX DNA_Sola 509319 509702 47 + . . scaffold1698 GLEAN mRNA 503808 514720 0.638313 + . ID=CGI_10019389; scaffold1698 WUBlastX DNA_Sola 510429 510563 30 + . . scaffold1698 GLEAN mRNA 503808 514720 0.638313 + . ID=CGI_10019389; scaffold39120 WUBlastX LTR_Ngaro 46310 46471 41 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold332 WUBlastX DNA_TcMar-Tc1 446173 446343 30 + . . . . . -1 -1 -1 . . . C28702 WUBlastX DNA_TcMar-Tc1 1671 1919 34 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc1 268756 269115 100 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_TcMar-Tc1 273244 273375 35 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L1-Tx1 771209 771460 85 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L1-Tx1 194 454 86 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_L2 620056 620310 128 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_CR1-L2 48585 48710 106 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L2 496229 496804 100 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold622 WUBlastX LINE_CR1-L2 180457 181035 29 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 24379 24540 110 + . . . . . -1 -1 -1 . . . scaffold432 WUBlastX DNA_Crypton 732447 732950 85 - . . scaffold432 GLEAN mRNA 728697 733393 0.995435 - . ID=CGI_10023120; scaffold410 WUBlastX DNA_Crypton 52076 52435 67 + . . . . . -1 -1 -1 . . . scaffold42836 WUBlastX LTR_Gypsy 114514 114642 31 + . . scaffold42836 GLEAN mRNA 101715 122664 0.986039 + . ID=CGI_10007860; scaffold1154 WUBlastX LTR_Gypsy-Cigr 391632 391703 20 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_IS4EU 850232 850360 47 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_IS4EU 850820 850987 35 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_Kolobok-IS4 68281 68505 55 - . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_Kolobok-IS4 68702 68929 38 - . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold88 WUBlastX DNA_hAT-Tip100 5680 5856 58 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold1154 WUBlastX LTR_Gypsy 498049 498621 82 - . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX DNA_Harbinger 39297 39332 21 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1 372632 373351 79 + . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_L1 13990 14370 118 - . . . . . -1 -1 -1 . . . scaffold38272 WUBlastX LINE_L1 51317 51619 53 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold40638 WUBlastX LINE_L1-Tx1 89884 90303 72 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1 24193 24480 119 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold36928 WUBlastX LINE_L1 34502 35275 90 - . . . . . -1 -1 -1 . . . scaffold39088 WUBlastX DNA_TcMar-Tc1 41250 41582 57 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold925 WUBlastX LINE_Penelope 488389 488865 58 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_RTE-BovB 10989 11198 33 - . . . . . -1 -1 -1 . . . scaffold38750 WUBlastX LINE_RTE-X 16879 17373 21 + . . scaffold38750 GLEAN mRNA 15091 19690 0.999995 + . ID=CGI_10002957; scaffold619 WUBlastX LINE_RTE-X 659782 659997 116 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_RTE-X 27880 28140 80 - . . scaffold1794 GLEAN mRNA 20538 42560 0.51959 + . ID=CGI_10019565; scaffold43136 WUBlastX LINE_RTE-X 217872 218114 92 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 626503 626799 95 + . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LINE_RTE-X 92516 92878 81 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1080212 1080499 97 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold433 WUBlastX DNA_PiggyBac 191726 192013 36 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 37698 38006 91 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX DNA_Maverick 90879 91160 103 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Maverick 374818 375492 106 + . . . . . -1 -1 -1 . . . scaffold37772 WUBlastX DNA_Maverick 22880 23278 121 - . . scaffold37772 GLEAN mRNA 22803 28480 0.678428 - . ID=CGI_10002493; scaffold332 WUBlastX LINE_RTE-BovB 463293 463589 103 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-BovB 797222 797422 54 - . . . . . -1 -1 -1 . . . scaffold250 WUBlastX LTR_Ngaro 28451 28912 110 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Ngaro 677515 677730 59 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_Sola 295198 295305 47 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_TcMar-Tc1 272978 273160 28 + . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX LINE_L1-Tx1 112779 113108 91 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold37252 WUBlastX LINE_L1-Tx1 18463 18648 54 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_L1-Tx1 168181 168540 98 - . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_CR1-L2 138932 139012 37 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L2 1574763 1575305 47 - . . . . . -1 -1 -1 . . . scaffold43530 WUBlastX LINE_CR1-L2 208690 209205 122 + . . . . . -1 -1 -1 . . . C33482 WUBlastX LINE_CR1-L2 4105 4488 72 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1-L2 587594 587782 102 + . . . . . -1 -1 -1 . . . scaffold1803 WUBlastX LINE_L2 140824 141378 107 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L2 526753 527583 38 + . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_Jockey 375737 376207 26 - . . . . . -1 -1 -1 . . . C29982 WUBlastX LTR_Gypsy 5749 6240 99 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy-Cigr 101772 101927 101 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LTR_Gypsy 7786 8415 109 - . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LTR_Ngaro 41990 42109 39 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LTR_DIRS 389041 389190 60 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_DIRS 373345 373503 23 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 756821 757285 56 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 356151 356267 48 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 356312 356899 23 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_Ngaro 318759 319016 20 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 577982 578242 42 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 578318 578374 22 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold630 WUBlastX DNA_Harbinger 141539 141736 135 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 429463 429669 98 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy 239923 240117 66 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold839 WUBlastX LTR_Gypsy 91216 91302 26 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX RC_Helitron 222762 223166 150 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_IS4EU 671875 672060 98 + . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX DNA_TcMar-Marin 37939 38277 42 + . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX DNA_TcMar-Marin 38277 38402 27 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_IS4EU 89137 89409 103 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_IS4EU 67645 67869 109 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold145 WUBlastX DNA_IS4EU 113431 113670 34 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_IS4EU 138384 138485 40 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_NOF 1330577 1330741 119 - . . scaffold198 GLEAN mRNA 1312239 1337375 0.960179 - . ID=CGI_10027863; scaffold168 WUBlastX DNA_MuDR 178411 178497 30 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX DNA_MuDR 178618 178851 34 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold43340 WUBlastX LINE_L1-Tx1 238762 238926 65 + . . . . . -1 -1 -1 . . . scaffold39064 WUBlastX LINE_L1 61678 61719 22 - . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1 71688 71735 20 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold454 WUBlastX LINE_L1-Tx1 20728 21054 89 - . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX LINE_L1-Tx1 4055 4156 25 + . . . . . -1 -1 -1 . . . scaffold436 WUBlastX LINE_RTE-BovB 6198 6665 121 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_RTE-BovB 97754 97840 28 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-BovB 11941 12072 38 - . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_RTE-X 300609 300749 56 + . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_RTE-X 301295 301453 49 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 337021 337182 38 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX DNA_Maverick 10305 10754 48 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_RTE-X 106995 107117 41 + . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold290 WUBlastX LINE_RTE-X 188272 188622 25 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold1200 WUBlastX LINE_RTE-X 35953 36012 25 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_RTE-X 330266 330589 74 - . . scaffold109 GLEAN mRNA 303639 363474 0.446526 - . ID=CGI_10022113; scaffold305 WUBlastX LINE_RTE-BovB 91696 92331 78 + . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LINE_RTE-X 110284 110415 57 + . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold647 WUBlastX DNA_Sola 142639 143013 72 - . . . . . -1 -1 -1 . . . scaffold1089 WUBlastX LTR_DIRS 114751 115002 116 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L1-Tx1 34409 34657 31 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_L1-Tx1 144038 144142 42 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_PiggyBac 609146 609265 65 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold1647 WUBlastX DNA_TcMar-Tc1 53664 54134 90 + . . . . . -1 -1 -1 . . . C35134 WUBlastX DNA_TcMar-Tc2 18584 18823 45 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX DNA_TcMar-Tc1 250453 250821 26 + . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LTR_Pao 44902 45222 34 - . . scaffold1815 GLEAN mRNA 41524 49047 0.999999 + . ID=CGI_10010261; scaffold41242 WUBlastX LTR_Pao 31140 31451 55 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_RTE-BovB 165105 165161 21 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_L2 69149 69637 105 + . . . . . -1 -1 -1 . . . scaffold205 WUBlastX LINE_L2 29410 29634 47 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LINE_CR1-L2 252516 252608 21 - . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX LINE_L2 57098 57313 47 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_CR1-L2 580695 581072 86 + . . scaffold115 GLEAN mRNA 575453 585479 0.845977 + . ID=CGI_10021407; scaffold40156 WUBlastX LINE_CR1 17983 18105 77 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_DIRS 346058 346156 28 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_DIRS 346436 346669 67 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_DIRS 250678 251067 93 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold1159 WUBlastX LINE_L2 160410 160634 35 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold499 WUBlastX LINE_L2 13046 13327 95 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_Gypsy-Cigr 200755 201321 135 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_IS4EU 16949 17332 84 + . . . . . -1 -1 -1 . . . scaffold118 WUBlastX DNA_IS4EU 24674 24790 26 - . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LINE_I 99882 99947 22 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX DNA_IS4EU 639356 639799 103 - . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold829 WUBlastX DNA_hAT-Tip100 99572 99745 143 - . . scaffold829 GLEAN mRNA 96076 100192 0.932887 + . ID=CGI_10021140; scaffold1077 WUBlastX DNA_hAT-Tip100 286675 286797 36 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_hAT-Tip100 286927 287112 72 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX DNA_hAT-hATw 3359 3571 60 - . . scaffold12 GLEAN mRNA 533 12832 0.970295 + . ID=CGI_10018011; scaffold591 WUBlastX DNA_Harbinger 537256 537345 76 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_Harbinger 134557 134868 106 - . . scaffold43 GLEAN mRNA 134440 134838 1 - . ID=CGI_10021342; scaffold1589 WUBlastX DNA_Harbinger 850859 851158 105 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_Harbinger 40173 40400 67 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_Harbinger 40928 41065 66 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_Kolobok 218048 218254 79 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold532 WUBlastX LINE_L1 73345 74103 100 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LINE_L1 17477 17704 63 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_MuDR 499917 500069 63 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_Penelope 93538 93711 53 + . . . . . -1 -1 -1 . . . scaffold1089 WUBlastX LINE_Penelope 64464 64697 94 + . . . . . -1 -1 -1 . . . scaffold40196 WUBlastX DNA_TcMar-Marin 3561 3938 131 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-X 947599 948000 58 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 102 263 55 - . . . . . -1 -1 -1 . . . scaffold42556 WUBlastX LINE_RTE-X 31192 31305 53 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-BovB 60034 60429 109 - . . scaffold290 GLEAN mRNA 51430 74485 0.815504 + . ID=CGI_10018531; scaffold321 WUBlastX LINE_RTE-X 144482 144970 105 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-BovB 107205 107564 49 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_RTE-RTE 158812 158994 64 + . . . . . -1 -1 -1 . . . C25378 WUBlastX LINE_RTE-X 243 488 95 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Sola 306897 307292 68 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold203 WUBlastX DNA_Sola 11076 11309 34 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_Sola 12023 12880 20 - . . scaffold203 GLEAN mRNA 11885 13015 0.999039 - . ID=CGI_10021061; scaffold38510 WUBlastX DNA_TcMar-Tc1 20028 20267 99 - . . scaffold38510 GLEAN mRNA 7470 20879 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20028 20267 99 - . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold867 WUBlastX LINE_RTE-X 684145 684789 24 - . . . . . -1 -1 -1 . . . scaffold42990 WUBlastX LINE_RTE-X 86268 86651 111 + . . scaffold42990 GLEAN mRNA 72080 92253 0.276547 + . ID=CGI_10008376; scaffold305 WUBlastX LINE_RTE-X 36708 37079 120 + . . scaffold305 GLEAN mRNA 36185 38516 0.896803 - . ID=CGI_10019112; scaffold32 WUBlastX DNA_TcMar-Tc1 300 902 67 - . . . . . -1 -1 -1 . . . scaffold40270 WUBlastX LINE_L1-Tx1 4899 5075 94 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L1-Tx1 6638 6961 77 + . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX LINE_L1-Tx1 112680 113042 98 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_L1-Tx1 870448 870834 82 - . . scaffold1219 GLEAN mRNA 868848 874682 0.999351 + . ID=CGI_10024304; scaffold42448 WUBlastX LINE_L1-Tx1 76559 77035 83 - . . . . . -1 -1 -1 . . . scaffold36928 WUBlastX LINE_CR1-L2 34562 35215 115 - . . . . . -1 -1 -1 . . . scaffold675 WUBlastX LINE_Jockey 68041 68187 64 - . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LTR_Gypsy-Cigr 321431 321904 152 + . . scaffold43818 GLEAN mRNA 318880 322672 0.37766 + . ID=CGI_10012777; scaffold274 WUBlastX LTR_Gypsy 362792 363301 148 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 289254 290027 118 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_L2 442398 442559 21 - . . . . . -1 -1 -1 . . . C31446 WUBlastX DNA_Crypton 3605 4225 71 + . . . . . -1 -1 -1 . . . C31446 WUBlastX DNA_Crypton 4536 4940 73 + . . . . . -1 -1 -1 . . . scaffold38568 WUBlastX LINE_L2 53889 54674 56 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 366212 366556 126 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 366212 366556 126 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold392 WUBlastX LTR_Ngaro 211361 211585 138 - . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_Ngaro 54971 55102 49 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold818 WUBlastX LTR_DIRS 95952 96476 122 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1673977 1674408 95 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Ngaro 46165 46518 99 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 407221 407817 118 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold1525 WUBlastX LTR_Ngaro 355098 355502 95 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold1551 WUBlastX LTR_Ngaro 72975 73748 93 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold253 WUBlastX LTR_Gypsy 3342 3881 91 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold223 WUBlastX LTR_Gypsy 7292 7651 115 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold885 WUBlastX LINE_R2-Hero 887644 887946 94 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_IS4EU 276735 277397 25 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_IS4EU 277456 277728 91 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_IS4EU 217187 217873 90 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 1105595 1105708 30 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 1105876 1106043 49 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 1106441 1106575 33 + . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX LINE_Penelope 148943 149656 55 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LINE_Penelope 85396 85509 52 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_Penelope 189596 189877 58 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1 482767 482898 24 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1 746636 747466 114 + . . . . . -1 -1 -1 . . . scaffold518 WUBlastX LINE_L1 5597 6247 123 - . . . . . -1 -1 -1 . . . scaffold1538 WUBlastX LINE_L1-Tx1 21261 21371 48 + . . . . . -1 -1 -1 . . . scaffold1538 WUBlastX LINE_L1-Tx1 21370 21837 39 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Kolobok 114607 114849 53 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Kolobok 114978 115106 51 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX DNA_Kolobok 271366 272700 88 + . . scaffold520 GLEAN mRNA 268997 273270 0.917942 + . ID=CGI_10010959; scaffold37064 WUBlastX DNA_Kolobok-Hyd 27094 27891 52 - . . scaffold37064 GLEAN mRNA 26599 28359 0.814068 - . ID=CGI_10002260; scaffold601 WUBlastX DNA_IS4EU 850889 850960 41 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 52120 52332 84 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_RTE-X 260141 260968 91 + . . scaffold1160 GLEAN mRNA 253181 264437 0.999999 - . ID=CGI_10015353; scaffold493 WUBlastX LINE_RTE-X 74273 74779 43 - . . scaffold493 GLEAN mRNA 57003 100421 0.916759 + . ID=CGI_10007247; scaffold983 WUBlastX LINE_RTE-X 1733 2449 54 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Harbinger 736462 736557 42 + . . . . . -1 -1 -1 . . . scaffold401 WUBlastX DNA_Sola 78050 78745 99 + . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_TcMar-Tc1 348984 349211 38 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_TcMar-Tc2 163182 163340 24 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold1255 WUBlastX DNA_TcMar-Tc1 431548 431937 90 - . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX LINE_L1-Tx1 107490 107942 61 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold358 WUBlastX DNA_Zator 69667 70047 111 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 284669 285253 139 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold336 WUBlastX LINE_CR1-L2 30028 30627 105 + . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_CR1-L2 32707 33024 81 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_CR1 1244424 1245113 135 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 98120 98680 111 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Ngaro 1348392 1348952 91 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 124641 125267 70 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy-Gmr1 318029 318253 39 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 246234 246731 24 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Gypsy 511725 512039 28 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold756 WUBlastX LINE_I 456448 456489 23 - . . scaffold756 GLEAN mRNA 435099 464068 0.998247 - . ID=CGI_10016467; scaffold43630 WUBlastX LINE_I 284168 285337 43 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_R2-Hero 287655 288200 133 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_hAT-Ac 62493 63137 64 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 432010 432237 69 - . . . . . -1 -1 -1 . . . C30084 WUBlastX LINE_L1-Tx1 2917 3012 20 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX DNA_Kolobok 133076 133246 35 - . . . . . -1 -1 -1 . . . scaffold1692 WUBlastX LINE_L1-Tx1 52934 53344 104 - . . scaffold1692 GLEAN mRNA 40202 58829 0.152045 + . ID=CGI_10004025; scaffold99 WUBlastX LINE_L1-Tx1 268582 269019 124 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_L1 379869 380168 89 - . . . . . -1 -1 -1 . . . scaffold32230 WUBlastX DNA_MuDR 2553 2771 76 - . . . . . -1 -1 -1 . . . C34804 WUBlastX DNA_TcMar-Marin 3694 4185 80 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 740975 741271 105 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_RTE-X 191693 192397 59 - . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LINE_RTE-X 8221 8598 138 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 1426632 1427033 128 + . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Maverick 81275 81409 86 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_RTE-X 287471 287890 55 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 544179 544565 75 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 684262 684684 115 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_RTE-X 503482 503919 82 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 557529 558092 104 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_Sola 450050 450712 133 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_TcMar-Tc1 1021650 1021985 47 + . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX LINE_RTE-X 29999 30349 94 - . . . . . -1 -1 -1 . . . scaffold38934 WUBlastX LTR_Ngaro 20660 21313 93 - . . scaffold38934 GLEAN mRNA 14643 26625 0.999796 + . ID=CGI_10003096; scaffold3 WUBlastX LTR_Ngaro 554221 554604 164 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1-Tx1 144678 145082 83 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX DNA_TcMar-Tc1 252772 253380 61 - . . scaffold109 GLEAN mRNA 221861 297851 0.997753 - . ID=CGI_10022112; C22998 WUBlastX LINE_L1-Tx1 135 275 113 - . . . . . -1 -1 -1 . . . scaffold1184 WUBlastX LINE_RTE-X 15983 17029 317 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-BovB 303497 304150 159 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold406 WUBlastX LTR_Gypsy 179780 180433 370 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 180392 181018 540 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LINE_RTE-X 260278 262065 762 + . . scaffold1792 GLEAN mRNA 252899 271519 0.999949 - . ID=CGI_10012749; scaffold86 WUBlastX LTR_Gypsy 311811 311915 39 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX RC_Helitron 35971 37008 326 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L2 761527 762231 138 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_L2 408007 409032 240 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_L2 410152 410736 268 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 647458 647925 129 + . . scaffold678 GLEAN mRNA 636648 664664 0.986036 - . ID=CGI_10026369; scaffold1583 WUBlastX LINE_CR1-L2 611378 612958 403 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 667204 667707 225 + . . . . . -1 -1 -1 . . . scaffold1184 WUBlastX LINE_RTE-X 17031 18143 571 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 7149 7766 410 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Tip100 412894 413154 69 - . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_L1-Tx1 6374 7300 491 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 231753 232382 135 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Ngaro 46489 47802 998 - . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_RTE-X 33297 34223 208 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LINE_CR1 148597 148854 79 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_CR1-L2 98738 99076 36 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_En-Spm 89048 90094 95 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Pao 33711 34226 96 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_L2 684304 684630 22 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_CR1 204700 204792 20 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold852 WUBlastX LTR_Ngaro 105440 106174 111 + . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LTR_Ngaro 449474 450208 111 - . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX LTR_DIRS 36320 36649 159 + . . . . . -1 -1 -1 . . . scaffold1366 WUBlastX DNA_Crypton 26354 26734 62 + . . . . . -1 -1 -1 . . . scaffold1366 WUBlastX DNA_Crypton 27285 27638 94 + . . . . . -1 -1 -1 . . . scaffold436 WUBlastX LINE_L2 12863 13165 153 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_L2 147092 147403 42 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 122060 122293 58 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LTR_Gypsy 6157 7029 73 + . . . . . -1 -1 -1 . . . scaffold1596 WUBlastX DNA_hAT-Ac 2856 3404 21 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_hAT-Blackja 438164 438265 28 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_hAT-Blackja 438261 438410 68 + . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT-Ac 269 988 83 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT-Ac 2820 2912 28 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LINE_L2 88208 88342 24 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1 96948 97001 23 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 578835 578984 45 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1 328956 329411 115 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1 169463 170149 95 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold750 WUBlastX LTR_Ngaro 537331 537606 130 + . . . . . -1 -1 -1 . . . C37392 WUBlastX DNA_TcMar-Marin 17103 17639 123 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX DNA_MuDR 57551 58372 55 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_Penelope 91701 92102 126 + . . scaffold880 GLEAN mRNA 88452 95761 0.999285 + . ID=CGI_10022181; C24520 WUBlastX LINE_Penelope 1747 1878 56 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_RTE-BovB 75371 75844 189 - . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_RTE-X 137417 137932 105 + . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LINE_RTE-X 139725 139880 90 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 337225 337461 111 + . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LINE_RTE-X 30534 30905 100 - . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX LINE_RTE-X 58930 59403 111 - . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_RTE-BovB 125717 125818 29 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold578 WUBlastX LINE_RTE-X 349831 350235 134 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold1 WUBlastX LINE_L1-Tx1 136533 136844 97 - . . . . . -1 -1 -1 . . . C28702 WUBlastX DNA_TcMar-Tc1 2114 2248 53 - . . . . . -1 -1 -1 . . . C28702 WUBlastX DNA_TcMar-Tc1 2251 2355 60 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Pao 262574 262729 25 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_En-Spm 121590 122954 866 + . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX RC_Helitron 30099 32156 725 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 329256 329351 26 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 329278 330099 237 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 330103 330384 132 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold801 WUBlastX LTR_Ngaro 570554 571522 630 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 499825 500061 97 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy-Cigr 26898 27962 398 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_RTE-X 394959 395792 170 - . . scaffold301 GLEAN mRNA 385076 401217 0.811406 + . ID=CGI_10026720; scaffold1182 WUBlastX RC_Helitron 44424 45044 141 - . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_Penelope 13184 13636 256 + . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_Penelope 13639 14352 194 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_DIRS 468883 469509 252 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold1850 WUBlastX LTR_Gypsy 242070 242282 51 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LINE_L1-Tx1 59453 60592 623 - . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_R2-Hero 125544 125648 99 + . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LTR_Gypsy-Cigr 27462 28925 1120 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Gypsy 233825 235327 247 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Gypsy 223192 223914 233 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LTR_Gypsy 141665 143146 1037 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L1-Tx1 540339 541682 392 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LTR_DIRS 39582 40160 482 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LTR_DIRS 40133 40969 609 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1-Tx1 102523 102759 74 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1-Tx1 102695 104026 638 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX RC_Helitron 276772 277494 266 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 297143 298759 1020 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX DNA_Zator 38891 39970 352 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX DNA_Zator 39988 40407 345 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX DNA_Zator 40406 41041 352 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX DNA_Zator 41461 41628 57 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Pao 122511 122915 20 + . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 40261 40404 64 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Pao 243 467 60 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Pao 207728 208507 135 + . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_L2-Hydra 160248 160532 61 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L2 485229 485351 91 + . . . . . -1 -1 -1 . . . scaffold47 WUBlastX LINE_L2 38087 38488 105 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LINE_L2 208107 208580 91 + . . scaffold43804 GLEAN mRNA 206873 222843 0.544849 - . ID=CGI_10012559; scaffold610 WUBlastX LTR_Gypsy 129884 130237 135 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold85 WUBlastX LTR_Gypsy 634497 635528 127 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold1203 WUBlastX LINE_R2-Hero 96821 97435 67 + . . scaffold1203 GLEAN mRNA 96599 98385 0.992512 + . ID=CGI_10010424; scaffold1244 WUBlastX LTR_Gypsy 123312 123701 83 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold880 WUBlastX LTR_Ngaro 652001 652402 151 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 221668 222666 135 - . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 75704 75919 49 - . . scaffold138 GLEAN mRNA 71718 76716 0.998636 - . ID=CGI_10008427; scaffold138 WUBlastX LINE_L1-Tx1 75918 76130 70 - . . scaffold138 GLEAN mRNA 71718 76716 0.998636 - . ID=CGI_10008427; scaffold1157 WUBlastX LINE_RTE-BovB 40160 40456 35 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 411510 411860 57 + . . . . . -1 -1 -1 . . . scaffold42598 WUBlastX LINE_RTE-BovB 161745 162068 93 + . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_Maverick 2054 2173 24 - . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_RTE-X 348167 348538 100 + . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LINE_RTE-X 100522 100893 100 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_RTE-X 248243 248614 100 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 305 358 54 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_RTE-X 235906 236277 100 - . . scaffold504 GLEAN mRNA 229448 243335 1 - . ID=CGI_10016027; scaffold230 WUBlastX LTR_Ngaro 196310 196600 47 + . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold1107 WUBlastX LINE_L1-Tx1 42662 43069 65 - . . scaffold1107 GLEAN mRNA 25384 68274 0.797312 + . ID=CGI_10004768; scaffold1107 WUBlastX LINE_L1-Tx1 43030 43113 35 - . . scaffold1107 GLEAN mRNA 25384 68274 0.797312 + . ID=CGI_10004768; scaffold392 WUBlastX LINE_L1-Tx1 478237 478359 28 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy-Cigr 108515 108829 110 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_DRE 159333 159581 43 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 311098 311718 126 - . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 276802 276951 101 - . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy-Cigr 69574 70653 447 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold847 WUBlastX LTR_DIRS 511809 512111 79 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold94 WUBlastX DNA_hAT-Blackja 118806 119738 558 + . . scaffold94 GLEAN mRNA 111860 132138 0.804225 + . ID=CGI_10013913; scaffold94 WUBlastX DNA_hAT-Blackja 120038 120616 178 + . . scaffold94 GLEAN mRNA 111860 132138 0.804225 + . ID=CGI_10013913; scaffold94 WUBlastX DNA_hAT-Blackja 120703 121077 171 + . . scaffold94 GLEAN mRNA 111860 132138 0.804225 + . ID=CGI_10013913; scaffold751 WUBlastX LINE_L1-Tx1 136796 138877 850 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_RTE-X 166238 168031 872 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LINE_L1-Tx1 167004 169364 814 - . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_L1-Tx1 122790 123164 154 + . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_L1-Tx1 123167 123889 121 + . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_L1-Tx1 123849 124700 326 + . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_L1-Tx1 125206 125469 46 + . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_L1-Tx1 125471 125995 102 + . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_L1-Tx1 126181 126639 29 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy-Cigr 266930 267889 358 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_L1-Tx1 14986 15561 136 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L1-Tx1 598274 599938 499 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L1-Tx1 601099 601665 22 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Zator 167423 169885 877 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Zator 170342 170521 63 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Zator 170992 171165 60 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 34574 34780 186 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold94 WUBlastX LTR_Gypsy-Cigr 67471 68613 376 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold654 WUBlastX DNA_Maverick 44736 45020 196 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 45100 46005 473 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 46489 46929 316 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX DNA_TcMar-Tc1 11253 11363 38 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L2 104100 104249 36 - . . . . . -1 -1 -1 . . . C26674 WUBlastX LINE_L2-Hydra 1 693 119 + . . . . . -1 -1 -1 . . . scaffold19568 WUBlastX LINE_CR1-L2 3 257 105 + . . . . . -1 -1 -1 . . . scaffold36494 WUBlastX LINE_L2 1026 1577 125 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_hAT-Tip100 83855 84238 117 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_hAT-Tip100 84505 85041 31 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_hAT-hATw 7857 8297 75 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 242873 243274 38 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 148344 148436 31 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Ngaro 42099 42575 169 - . . scaffold507 GLEAN mRNA 41380 65568 0.398486 - . ID=CGI_10019084; scaffold419 WUBlastX DNA_Maverick 1363009 1363467 90 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Maverick 133270 133728 90 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_Proto2 83259 83594 93 + . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_RTE-X 120731 121171 47 - . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_RTE-X 134192 134929 25 + . . . . . -1 -1 -1 . . . scaffold1001 WUBlastX LINE_RTE-X 129058 129174 29 - . . scaffold1001 GLEAN mRNA 107697 137690 0.433806 + . ID=CGI_10007119; scaffold854 WUBlastX LINE_RTE-X 450423 450836 119 - . . scaffold854 GLEAN mRNA 397662 453116 0.849104 + . ID=CGI_10022252; scaffold896 WUBlastX LINE_RTE-X 70528 70701 28 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_DIRS 538914 539948 119 + . . . . . -1 -1 -1 . . . scaffold37722 WUBlastX DNA_Sola 34987 35208 27 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 571203 571409 90 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 570337 570615 40 + . . . . . -1 -1 -1 . . . scaffold39976 WUBlastX LTR_Pao 45940 47553 708 + . . . . . -1 -1 -1 . . . scaffold39976 WUBlastX LTR_Pao 47544 47696 69 + . . . . . -1 -1 -1 . . . C27444 WUBlastX LTR_Gypsy 3 1562 1213 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 131372 131638 89 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 527026 527577 516 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 527565 528281 463 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 528651 528749 28 + . . . . . -1 -1 -1 . . . scaffold35138 WUBlastX LTR_Gypsy 7850 9715 349 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 638775 640640 349 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 216928 217656 382 + . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LTR_Gypsy 81201 83369 585 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LTR_Pao 471266 473698 946 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 554610 556721 1035 - . . . . . -1 -1 -1 . . . scaffold43786 WUBlastX LINE_L1-Tx1 248047 249228 438 - . . scaffold43786 GLEAN mRNA 234476 275282 0.999342 - . ID=CGI_10012356; scaffold43786 WUBlastX LINE_L1-Tx1 249388 250305 554 - . . scaffold43786 GLEAN mRNA 234476 275282 0.999342 - . ID=CGI_10012356; scaffold597 WUBlastX LINE_RTE-X 90851 92734 777 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_DIRS 65544 66029 306 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy 167932 169701 756 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold57 WUBlastX DNA_hAT 300416 301078 127 + . . scaffold57 GLEAN mRNA 297762 301894 1 + . ID=CGI_10020550; scaffold1037 WUBlastX LINE_CR1 119708 120058 126 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_CR1 442017 442094 20 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_L2 212512 213183 167 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy-Cigr 266335 267045 170 + . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LTR_Ngaro 85964 86092 31 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Crypton 224236 225177 125 + . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_Ngaro 197178 197282 28 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; C29290 WUBlastX LTR_DIRS 3527 3910 119 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LTR_Ngaro 3721 4533 85 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LTR_Ngaro 4532 4684 47 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Harbinger 248748 248891 54 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Harbinger 249084 249350 83 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 525751 525996 75 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_IS4EU 160519 161013 134 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_IS4EU 449109 449423 100 - . . . . . -1 -1 -1 . . . C29202 WUBlastX DNA_IS4EU 1127 1291 49 - . . . . . -1 -1 -1 . . . C29202 WUBlastX DNA_IS4EU 2073 2162 52 - . . . . . -1 -1 -1 . . . C29202 WUBlastX DNA_IS4EU 2459 2668 64 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_R2-Hero 309638 309871 77 + . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX DNA_Kolobok 65942 66136 76 - . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1631 WUBlastX LINE_L1 17320 18060 125 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L1 478503 478835 39 - . . . . . -1 -1 -1 . . . scaffold1565 WUBlastX LINE_L1-Tx1 7817 7951 23 - . . scaffold1565 GLEAN mRNA 460 9199 1 + . ID=CGI_10000778; scaffold1154 WUBlastX LINE_CR1 28532 29233 46 + . . . . . -1 -1 -1 . . . scaffold118 WUBlastX LINE_RTE-X 21691 22011 119 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_MuDR 678020 678220 68 + . . scaffold101 GLEAN mRNA 676539 710927 0.888019 - . ID=CGI_10021653; scaffold1535 WUBlastX DNA_Maverick 103391 103753 76 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX DNA_Maverick 102790 103062 132 - . . . . . -1 -1 -1 . . . scaffold1460 WUBlastX LINE_RTE-X 4215 4457 27 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 540855 541190 95 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L1-Tx1 1234419 1234721 76 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold219 WUBlastX DNA_hAT-Tip100 433206 433433 94 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Tc1 68738 68941 27 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX DNA_TcMar-Tc1 2983 3255 63 + . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_TcMar-Tc1 11022 11294 63 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_TcMar-Tc1 673304 673576 63 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Pao 263267 263689 263 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Pao 263815 263991 166 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Pao 264518 265015 396 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_L1-Tx1 106988 108307 178 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Gypsy 227496 227792 239 + . . . . . -1 -1 -1 . . . scaffold43616 WUBlastX LINE_RTE-X 197050 197760 224 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 197744 198022 168 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 198422 199459 627 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 199465 199872 209 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold37760 WUBlastX LTR_Gypsy 11326 13692 767 + . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold597 WUBlastX LTR_Gypsy 100188 100604 194 + . . . . . -1 -1 -1 . . . scaffold42030 WUBlastX LINE_RTE-X 78965 80656 719 + . . scaffold42030 GLEAN mRNA 73599 103190 0.98897 + . ID=CGI_10006046; scaffold70 WUBlastX LTR_Gypsy 584104 584781 474 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_Gypsy 585233 586018 662 + . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 8979 9344 187 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX LTR_Gypsy 9346 10857 484 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX LTR_Gypsy 10875 11567 499 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold818 WUBlastX LTR_Pao 66730 66915 63 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 79464 79610 25 - . . . . . -1 -1 -1 . . . scaffold36664 WUBlastX LTR_Gypsy-Cigr 23354 23920 173 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L2 63962 64306 91 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_L2 591433 591597 46 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_CR1 58922 59146 90 - . . . . . -1 -1 -1 . . . scaffold39122 WUBlastX LTR_Gypsy-Cigr 52977 53513 199 - . . . . . -1 -1 -1 . . . scaffold1641 WUBlastX LTR_Gypsy-Cigr 233318 233956 172 - . . . . . -1 -1 -1 . . . scaffold387 WUBlastX LTR_Gypsy 35180 35461 50 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold322 WUBlastX LTR_DIRS 124789 125448 159 + . . . . . -1 -1 -1 . . . C33378 WUBlastX LTR_Ngaro 7394 8017 149 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LTR_Gypsy 555939 556103 90 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold275 WUBlastX LTR_Gypsy 149802 149888 23 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_hAT-hATw 349674 350750 79 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_Kolobok-IS4 217876 218229 133 - . . . . . -1 -1 -1 . . . scaffold41008 WUBlastX LTR_Ngaro 50269 50880 182 + . . . . . -1 -1 -1 . . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6084 6308 58 + . . . . . -1 -1 -1 . . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6862 6987 40 + . . . . . -1 -1 -1 . . . scaffold487 WUBlastX LINE_I-Nimb 8864 9415 68 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_L1 670945 671298 54 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_L1 671343 671660 144 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1-Tx1 213759 214061 181 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-X 221072 221437 38 - . . scaffold954 GLEAN mRNA 220872 230195 0.904789 - . ID=CGI_10010745; scaffold444 WUBlastX DNA_Maverick 1730 2149 138 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 272280 272684 148 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1369001 1369675 21 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-BovB 71810 72109 31 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-BovB 341550 341642 64 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX DNA_Sola 445646 445732 42 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LINE_RTE-X 70946 71599 133 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_L1-Tx1 293691 294122 23 - . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_L1-Tx1 7916 8458 93 - . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_L1-Tx1 9729 9782 20 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX DNA_TcMar-Tc1 11395 11850 131 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L1-Tx1 269690 270184 455 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L1-Tx1 270183 272039 724 + . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LTR_Gypsy-Cigr 30507 30761 226 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 19135 20109 298 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy-Troyk 522275 523006 320 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy-Troyk 522967 523779 717 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy-Troyk 523778 524101 368 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_RTE-X 45887 46480 310 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_RTE-X 47130 48353 793 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_RTE-X 49233 49406 67 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_RTE-X 49364 49768 144 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 702192 702308 63 + . . . . . -1 -1 -1 . . . C31370 WUBlastX LTR_Gypsy 2621 3868 499 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LTR_Gypsy 91272 92759 401 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LTR_Gypsy 93503 94156 541 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Maverick 624234 624533 243 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 313060 314343 121 - . . scaffold896 GLEAN mRNA 298848 329619 0.997833 - . ID=CGI_10022840; scaffold896 WUBlastX LINE_L1-Tx1 314319 316364 909 - . . scaffold896 GLEAN mRNA 298848 329619 0.997833 - . ID=CGI_10022840; scaffold37358 WUBlastX LINE_CR1 37591 37902 250 - . . . . . -1 -1 -1 . . . scaffold37002 WUBlastX LINE_L2 9134 9355 23 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_CR1 444636 445019 26 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_RTE-BovB 486212 486268 25 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold332 WUBlastX LTR_Gypsy 627224 628090 189 + . . . . . -1 -1 -1 . . . scaffold139 WUBlastX LTR_Ngaro 56901 57590 120 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_Gypsy 16648 16839 46 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold301 WUBlastX LINE_Jockey 395957 397165 71 - . . scaffold301 GLEAN mRNA 385076 401217 0.811406 + . ID=CGI_10026720; scaffold43 WUBlastX DNA_IS4EU 2836 4008 112 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Harbinger 387950 388111 50 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_R2-Hero 82379 82537 62 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX DNA_Kolobok 208183 208353 32 + . . scaffold1816 GLEAN mRNA 205470 210228 0.819371 + . ID=CGI_10014402; scaffold1816 WUBlastX DNA_Kolobok 209255 209371 43 + . . scaffold1816 GLEAN mRNA 205470 210228 0.819371 + . ID=CGI_10014402; scaffold1816 WUBlastX DNA_Kolobok 209712 209921 66 + . . scaffold1816 GLEAN mRNA 205470 210228 0.819371 + . ID=CGI_10014402; scaffold39858 WUBlastX DNA_Kolobok 11319 11480 102 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold39880 WUBlastX LINE_L1 41851 42195 183 + . . . . . -1 -1 -1 . . . scaffold41628 WUBlastX LINE_L1-Tx1 97448 97645 78 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1 171138 171311 29 - . . . . . -1 -1 -1 . . . scaffold38498 WUBlastX LINE_Penelope 33806 34411 154 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX DNA_TcMar-Tc1 303936 304391 112 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Ngaro 1053497 1053601 25 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy 81456 81506 22 + . . . . . -1 -1 -1 . . . scaffold40856 WUBlastX DNA_Maverick 70875 71168 173 + . . . . . -1 -1 -1 . . . scaffold35014 WUBlastX DNA_PiggyBac 16241 16519 113 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold544 WUBlastX LINE_RTE-BovB 130739 131539 72 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 634011 634301 80 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-X 481237 481758 125 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_RTE-X 300544 301041 167 + . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_RTE-X 139279 139791 161 + . . scaffold42840 GLEAN mRNA 134311 145100 0.999472 - . ID=CGI_10007836; scaffold120 WUBlastX LINE_RTE-X 461025 461582 171 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 577030 577305 148 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold1442 WUBlastX LINE_L1-Tx1 19599 19874 50 - . . scaffold1442 GLEAN mRNA 5012 20569 0.987275 - . ID=CGI_10003583; scaffold1442 WUBlastX LINE_L1-Tx1 19897 20304 101 - . . scaffold1442 GLEAN mRNA 5012 20569 0.987275 - . ID=CGI_10003583; scaffold406 WUBlastX LTR_Gypsy-Cigr 134178 134408 104 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy-Cigr 136517 137059 187 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold1317 WUBlastX LTR_Pao 73044 73613 261 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LINE_L1-Tx1 2294 4306 1324 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 355881 356387 456 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 356660 357136 176 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 358537 358743 28 - . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_Helitron 190968 191624 43 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold39880 WUBlastX LINE_L2 45358 47433 1134 + . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_L2 47538 47825 156 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L2 312999 313223 100 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold1771 WUBlastX LTR_Gypsy 90200 91474 505 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold457 WUBlastX LTR_Pao 89410 89583 80 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_En-Spm 283726 285102 122 + . . scaffold934 GLEAN mRNA 282815 291724 0.901828 + . ID=CGI_10015447; scaffold1241 WUBlastX LINE_L1 207454 207690 120 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_CR1 173496 173822 125 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_CR1 174276 174509 60 + . . . . . -1 -1 -1 . . . scaffold43562 WUBlastX LINE_CR1 167151 167594 193 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167151 167594 193 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold533 WUBlastX LINE_CR1-L2 96089 96688 201 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold39358 WUBlastX LTR_Ngaro 20596 20820 76 + . . . . . -1 -1 -1 . . . C26534 WUBlastX LTR_DIRS 9 641 183 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_IS4EU 207896 208207 204 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LINE_L2 320907 321002 24 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; C34562 WUBlastX DNA_IS4EU 7371 7736 155 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_L1 380785 380874 22 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_MuDR 160182 160787 169 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_TcMar-Tc1 615477 615719 95 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 32433 32714 106 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-BovB 33332 33889 132 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_RTE-BovB 32346 32480 20 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_RTE-X 95576 95797 113 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_TcMar-Marin 308578 308781 173 + . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 88730 88996 61 - . . . . . -1 -1 -1 . . . C36014 WUBlastX DNA_TcMar-Tc2 28004 28273 103 - . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LTR_Gypsy 41868 43061 149 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold1316 WUBlastX LINE_L1-Tx1 369801 370202 135 - . . scaffold1316 GLEAN mRNA 367063 406080 0.346646 - . ID=CGI_10016312; scaffold1656 WUBlastX LTR_Gypsy-Troyk 74783 76264 75 + . . scaffold1656 GLEAN mRNA 73832 80261 0.912224 + . ID=CGI_10006143; scaffold97 WUBlastX LINE_L1-Tx1 100430 102322 569 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Maverick 63305 63967 375 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 92570 92641 34 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LTR_Gypsy 125576 126427 129 - . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 72578 72703 27 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 72670 73161 146 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 73604 73732 111 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LINE_L1-Tx1 241963 245478 1252 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX RC_Helitron 1298596 1299219 96 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 45876 46427 72 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_R2-Hero 214466 214720 87 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_I 139888 140742 137 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_Kolobok-IS4 430129 430539 23 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_Kolobok-IS4 430907 431440 80 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX DNA_IS4EU 49820 50554 199 + . . . . . -1 -1 -1 . . . scaffold37850 WUBlastX LTR_Gypsy 20816 20887 22 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_L1 197158 198072 163 - . . . . . -1 -1 -1 . . . scaffold1706 WUBlastX LINE_L1-Tx1 45618 46463 66 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold35894 WUBlastX LINE_L1-Tx1 25802 26149 75 - . . . . . -1 -1 -1 . . . scaffold35894 WUBlastX LINE_L1-Tx1 26199 26645 105 - . . . . . -1 -1 -1 . . . scaffold35486 WUBlastX LINE_RTE-X 15426 16019 110 - . . scaffold35486 GLEAN mRNA 8513 17205 0.999998 - . ID=CGI_10001528; scaffold449 WUBlastX LINE_RTE-X 139100 139975 103 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_Sola 22807 22980 26 + . . scaffold1032 GLEAN mRNA 21338 23952 0.840259 + . ID=CGI_10021656; scaffold1032 WUBlastX DNA_Sola 23311 23418 21 + . . scaffold1032 GLEAN mRNA 21338 23952 0.840259 + . ID=CGI_10021656; scaffold1032 WUBlastX DNA_Sola 23494 23949 103 + . . scaffold1032 GLEAN mRNA 21338 23952 0.840259 + . ID=CGI_10021656; scaffold34910 WUBlastX LTR_Gypsy-Cigr 6048 7373 444 - . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX LTR_Pao 117718 118104 277 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Pao 685173 686000 119 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Pao 688095 688805 611 + . . . . . -1 -1 -1 . . . scaffold98 WUBlastX LTR_Gypsy 311431 312741 1079 - . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX DNA_hAT-Tip100 27306 29063 1305 - . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX DNA_hAT-Tip100 29066 29596 355 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_RTE-X 223396 224811 500 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 587891 587956 22 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_DIRS 741012 741170 33 + . . . . . -1 -1 -1 . . . scaffold470 WUBlastX LTR_Gypsy 1355 1483 21 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Ngaro 25831 26064 144 + . . scaffold499 GLEAN mRNA 22718 44589 1 + . ID=CGI_10015760; scaffold351 WUBlastX LTR_Ngaro 225601 225834 144 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_Helitron 19189 19620 191 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX DNA_TcMar-Marin 77313 77807 57 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_Gypsy 120495 121184 130 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120495 121184 130 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold686 WUBlastX DNA_Harbinger 53055 53225 118 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_Harbinger 717673 717726 36 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX DNA_Kolobok 367098 367319 41 + . . scaffold42 GLEAN mRNA 366625 368271 0.99869 + . ID=CGI_10018915; scaffold42 WUBlastX DNA_Kolobok 368276 368560 76 + . . . . . -1 -1 -1 . . . C34110 WUBlastX DNA_IS4EU 13670 14296 208 - . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold1210 WUBlastX DNA_Kolobok 401993 402343 127 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_CR1 58435 58590 45 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_RTE-X 513706 514368 193 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_RTE-X 313518 314207 171 - . . . . . -1 -1 -1 . . . scaffold1855 WUBlastX LINE_RTE-X 205682 206389 158 - . . scaffold1855 GLEAN mRNA 188156 207855 0.999324 - . ID=CGI_10008876; scaffold37680 WUBlastX LINE_RTE-X 426 1259 87 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-X 51243 52274 128 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 100708 101022 55 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Helitron 272470 274044 1284 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Gypsy 479811 480281 351 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 482018 482692 402 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold1532 WUBlastX LTR_Gypsy 394527 395360 569 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 395371 396450 738 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold39900 WUBlastX DNA_Maverick 67619 69724 1279 - . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold626 WUBlastX DNA_hAT 190176 190427 37 + . . scaffold626 GLEAN mRNA 185398 190939 0.996819 + . ID=CGI_10019986; scaffold37664 WUBlastX LINE_CR1-L2 30090 30722 236 + . . scaffold37664 GLEAN mRNA 26553 34965 0.581431 + . ID=CGI_10002440; scaffold86 WUBlastX LINE_CR1 575283 575495 40 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Gypsy 44346 44717 82 - . . . . . -1 -1 -1 . . . C25792 WUBlastX LTR_Ngaro 2401 2802 244 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_En-Spm 214578 215126 199 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 613118 613222 65 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_IS4EU 307459 307845 225 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_IS4EU 202184 202345 94 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_Harbinger 70750 70842 69 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_Harbinger 71092 71448 175 + . . . . . -1 -1 -1 . . . scaffold1181 WUBlastX DNA_IS4EU 17457 18083 219 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_Penelope 838549 839670 129 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Ngaro 489238 489450 31 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Ngaro 489480 489935 198 + . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LTR_Ngaro 97305 97916 185 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; scaffold772 WUBlastX DNA_PiggyBac 283905 284060 50 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold1383 WUBlastX LINE_RTE-X 56790 57356 97 + . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_RTE-X 57380 57583 73 + . . . . . -1 -1 -1 . . . scaffold739 WUBlastX DNA_TcMar-Tc1 82223 82453 114 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LTR_Gypsy 192786 193175 123 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Gypsy 26354 27727 611 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Gypsy 81403 81888 463 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX RC_Helitron 15263 17698 1124 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX RC_Helitron 98543 99379 38 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy-Cigr 562332 562583 132 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy-Cigr 563845 565194 1163 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_Caulimoviru 127297 127530 29 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LINE_LOA 469122 469265 23 + . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LTR_Pao 187730 188167 119 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_L2 379863 380348 93 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_L2 380578 380874 54 + . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L2 43445 43801 115 + . . scaffold40638 GLEAN mRNA 41609 59545 0.679878 - . ID=CGI_10004286; scaffold40638 WUBlastX LINE_L2 43811 44065 50 + . . scaffold40638 GLEAN mRNA 41609 59545 0.679878 - . ID=CGI_10004286; scaffold260 WUBlastX LINE_CR1 33161 33259 22 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_CR1 150724 151287 143 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LINE_L2 56734 57123 211 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Gypsy 748006 748842 237 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX DNA_hAT-Tip100 67409 67648 50 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX DNA_Kolobok-IS4 411806 412168 51 + . . . . . -1 -1 -1 . . . scaffold37850 WUBlastX LTR_Gypsy 20637 20696 22 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_L1-Tx1 630562 631674 87 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold626 WUBlastX LINE_L1-Tx1 544337 545050 177 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 116640 117404 202 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX LINE_RTE-X 41117 41398 26 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX LINE_RTE-X 42261 42770 159 - . . . . . -1 -1 -1 . . . scaffold200 WUBlastX LINE_Proto2 93419 93985 47 - . . . . . -1 -1 -1 . . . scaffold1680 WUBlastX LINE_RTE-X 1932 2267 108 + . . . . . -1 -1 -1 . . . scaffold1680 WUBlastX LINE_RTE-X 2276 2746 73 + . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LINE_RTE-X 87764 88210 176 - . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX LTR_Ngaro 24223 24567 119 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold40680 WUBlastX LTR_Gypsy 77896 78555 117 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LTR_Pao 586970 587278 24 - . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold448 WUBlastX LTR_Gypsy-Cigr 176037 177395 768 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LTR_Pao 98638 100026 926 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 682576 685920 1518 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX LTR_Gypsy 387295 387822 421 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX LTR_Gypsy 387839 388288 362 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_CR1-L2 686500 687006 216 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_CR1-L2 320876 321385 214 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold780 WUBlastX LINE_L2 150167 150931 111 - . . scaffold780 GLEAN mRNA 138989 166483 0.986281 + . ID=CGI_10024719; scaffold334 WUBlastX DNA_En-Spm 1026087 1026383 100 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_En-Spm 1026416 1026634 61 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 105710 105760 24 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 72986 73420 48 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 74277 74471 29 - . . . . . -1 -1 -1 . . . scaffold38290 WUBlastX DNA_IS4EU 12606 13346 218 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX RC_Helitron 117656 117934 71 + . . . . . -1 -1 -1 . . . scaffold35694 WUBlastX LINE_R2-Hero 18211 18702 72 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_L1-Tx1 209187 209570 53 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_Kolobok 375766 375822 30 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold38210 WUBlastX LINE_L1 22348 22920 209 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold632 WUBlastX LINE_L1 270862 271392 234 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_L1 130720 131259 224 - . . scaffold115 GLEAN mRNA 126783 131612 1 - . ID=CGI_10021378; scaffold986 WUBlastX LINE_L1 99828 100487 220 + . . . . . -1 -1 -1 . . . scaffold36482 WUBlastX LINE_Penelope 33648 34439 189 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_Penelope 208603 209370 186 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Gypsy 210988 211161 127 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-Marin 95733 95834 24 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-Marin 96359 96589 116 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 435517 435996 81 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LINE_RTE-X 90286 90609 63 + . . . . . -1 -1 -1 . . . scaffold40476 WUBlastX LTR_Gypsy 26775 27125 21 + . . . . . -1 -1 -1 . . . scaffold1635 WUBlastX DNA_TcMar-Tc1 29202 29654 168 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1-Tx1 738022 738162 28 + . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Pao 9573 10559 399 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 13064 13495 316 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold847 WUBlastX LTR_Gypsy 497649 498533 701 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 518638 518838 153 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 518933 519208 107 - . . . . . -1 -1 -1 . . . C31012 WUBlastX LTR_Gypsy 3055 6810 2059 - . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX DNA_PiggyBac 198125 198316 125 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX DNA_PiggyBac 198481 198936 150 + . . . . . -1 -1 -1 . . . scaffold42634 WUBlastX DNA_PiggyBac 174260 174727 232 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_CR1 161921 163021 188 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold406 WUBlastX LINE_L2 440653 441078 261 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Gypsy 1176059 1176172 22 + . . . . . -1 -1 -1 . . . scaffold715 WUBlastX LTR_Gypsy 65036 65383 155 - . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX LTR_Ngaro 92167 92493 136 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_IS4EU 254008 254259 51 - . . . . . -1 -1 -1 . . . scaffold870 WUBlastX LTR_Gypsy 140599 141330 267 - . . scaffold870 GLEAN mRNA 139854 163294 0.423462 + . ID=CGI_10007496; scaffold1138 WUBlastX DNA_P 189705 190187 124 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 189705 190187 124 + . . scaffold1138 GLEAN mRNA 186841 191383 0.716431 + . ID=CGI_10015374; scaffold1737 WUBlastX LINE_Penelope 274649 274807 75 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_Penelope 275676 276065 168 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1 154860 155156 32 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L1-Tx1 270053 270754 106 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LINE_L1 42019 42144 23 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold351 WUBlastX LINE_L1-Tx1 312738 313628 169 - . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold1866 WUBlastX LINE_RTE-BovB 472841 473047 85 - . . . . . -1 -1 -1 . . . scaffold36526 WUBlastX LINE_L1-Tx1 20526 20948 45 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold1680 WUBlastX LTR_Gypsy-Cigr 73494 74306 577 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold1541 WUBlastX LTR_Pao 485674 487869 1544 + . . . . . -1 -1 -1 . . . scaffold36936 WUBlastX LTR_Pao 18042 18434 55 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold77 WUBlastX LTR_Gypsy-Cigr 1455472 1455531 32 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Pao 11607 12026 234 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_CR1 288748 289380 62 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_CR1-L2 438678 439298 243 - . . . . . -1 -1 -1 . . . scaffold43064 WUBlastX LINE_CR1 161626 162111 72 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LTR_Gypsy 27700 28140 234 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 949003 949599 265 + . . scaffold3 GLEAN mRNA 946459 958838 0.555132 + . ID=CGI_10027316; scaffold847 WUBlastX LTR_DIRS 509286 510176 147 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold1850 WUBlastX LTR_Gypsy 113735 114550 80 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_Harbinger 670685 670888 59 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_Harbinger 671404 671517 46 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 476581 476736 29 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX DNA_Harbinger 404842 405312 253 + . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX DNA_TcMar-Tc1 1219 2028 234 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1 571374 571772 132 - . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_L1 11861 12148 117 + . . . . . -1 -1 -1 . . . scaffold41852 WUBlastX LINE_L1 1081 1467 161 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 360600 360938 33 - . . . . . -1 -1 -1 . . . C34110 WUBlastX LINE_RTE-X 1890 2039 82 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_RTE-X 367533 367634 34 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 224978 225652 140 + . . scaffold631 GLEAN mRNA 219246 234334 0.970776 - . ID=CGI_10014178; scaffold332 WUBlastX LINE_RTE-X 633770 634156 98 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 710903 711604 137 - . . . . . -1 -1 -1 . . . scaffold35070 WUBlastX DNA_PiggyBac 11497 11652 52 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Maverick 209348 209599 162 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Maverick 209608 209820 92 - . . . . . -1 -1 -1 . . . scaffold38966 WUBlastX DNA_TcMar-Tc1 52595 53455 205 + . . scaffold38966 GLEAN mRNA 40711 56502 0.505852 + . ID=CGI_10003113; scaffold37944 WUBlastX DNA_Sola 48579 49502 142 - . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX DNA_TcMar-Tc1 592219 593214 147 - . . scaffold1031 GLEAN mRNA 571823 599273 0.583554 - . ID=CGI_10019718; scaffold389 WUBlastX DNA_TcMar-Tc1 79054 79503 130 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Pao 386560 389130 1637 + . . . . . -1 -1 -1 . . . scaffold40948 WUBlastX LTR_Pao 102688 104028 1187 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LTR_Gypsy-Cigr 66717 69767 2144 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold32488 WUBlastX LINE_CR1 1931 3535 20 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 200033 200524 283 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 61746 61943 92 + . . . . . -1 -1 -1 . . . C30072 WUBlastX LINE_RTE-X 4707 5999 51 + . . . . . -1 -1 -1 . . . scaffold37432 WUBlastX LINE_L1-Tx1 3227 3460 145 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_L1-Tx1 267194 267469 168 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 419141 422953 1940 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 1176479 1180231 2298 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 327178 330675 2069 - . . scaffold1532 GLEAN mRNA 321703 334271 0.99935 + . ID=CGI_10028244; scaffold1532 WUBlastX LINE_RTE-X 327178 330675 2069 - . . scaffold1532 GLEAN mRNA 325933 331440 0.918094 - . ID=CGI_10028245; scaffold1749 WUBlastX LTR_Gypsy 40939 42783 895 + . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LTR_Gypsy 71521 72249 149 + . . . . . -1 -1 -1 . . . scaffold715 WUBlastX LTR_Gypsy 64779 65024 167 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Ngaro 711024 711329 113 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Ngaro 571764 572453 161 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 500890 501114 126 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_Kolobok-IS4 657641 658153 51 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold41560 WUBlastX LINE_L1-Tx1 104709 105107 53 + . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_L1-Tx1 105286 105894 164 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LINE_L1-Tx1 162648 163427 173 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold335 WUBlastX LINE_L1-Tx1 468456 469055 165 - . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX DNA_TcMar-Tc1 80060 80257 63 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_TcMar-Pogo 410256 410687 168 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_TcMar-Fot1 1004300 1005121 134 + . . scaffold53 GLEAN mRNA 983465 1007230 0.466135 - . ID=CGI_10026695; scaffold1014 WUBlastX DNA_TcMar-Fot1 551523 552275 104 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-X 591484 591669 53 + . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX LINE_RTE-BovB 49634 49906 143 - . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX LINE_RTE-BovB 49897 50463 98 - . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX LINE_RTE-BovB 50584 50664 35 - . . . . . -1 -1 -1 . . . C32246 WUBlastX DNA_TcMar-Tc1 9067 9567 177 - . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX LTR_Gypsy 124441 124785 65 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 34120 34269 28 - . . . . . -1 -1 -1 . . . scaffold32230 WUBlastX LTR_Gypsy 5969 6271 145 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 476686 476739 37 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 36771 36836 25 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Harbinger 734410 734745 127 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 155339 156208 217 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_TcMar-Tigge 454562 454681 21 - . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LINE_L1-Tx1 193626 194468 134 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_L1-Tx1 70411 70539 40 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy 487684 489363 1076 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold1536 WUBlastX LTR_Pao 52528 55530 2502 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LTR_Gypsy 70657 71868 990 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LTR_Gypsy 71882 73672 1304 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_CR1 140985 141176 40 - . . . . . -1 -1 -1 . . . scaffold734 WUBlastX LINE_L2 20145 20786 252 - . . scaffold734 GLEAN mRNA 15567 24465 0.477862 - . ID=CGI_10003361; scaffold144 WUBlastX LINE_L2 468256 469683 205 - . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_DIRS 218641 219048 328 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold257 WUBlastX LTR_Ngaro 1067396 1067749 163 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 598037 598540 240 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 598576 598662 63 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_hAT-Ac 237693 238316 192 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 401256 401471 122 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_TcMar-Tc1 245728 245826 36 + . . . . . -1 -1 -1 . . . scaffold43278 WUBlastX LINE_Penelope 79638 80303 240 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 104263 104508 109 + . . . . . -1 -1 -1 . . . C34110 WUBlastX LINE_RTE-X 1890 2246 65 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_TcMar-Tc1 47841 48137 75 + . . scaffold1318 GLEAN mRNA 47679 59079 0.328272 + . ID=CGI_10008644; scaffold1200 WUBlastX LINE_CR1-L2 102650 103666 212 + . . . . . -1 -1 -1 . . . scaffold2 WUBlastX LTR_Pao 93 626 303 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 621467 621871 134 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold41594 WUBlastX LINE_L2 28473 29759 190 + . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Gypsy 7906 8211 61 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold759 WUBlastX LINE_L2 75039 75284 82 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1-Tx1 291428 292177 259 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_RTE-X 217261 217428 96 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 706912 707100 51 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Maverick 507373 507624 157 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX DNA_TcMar-Tc1 289239 289559 102 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX DNA_TcMar-Tc1 289640 289972 109 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX DNA_TcMar-Tc1 294667 294864 96 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_L1-Tx1 359557 359811 37 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_L1-Tx1 359823 360557 61 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_L1-Tx1 360566 360883 58 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy 565070 567994 2433 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 16648 17172 46 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 1314969 1315355 171 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; C27700 WUBlastX LTR_Gypsy 1847 2137 20 - . . . . . -1 -1 -1 . . . scaffold268 WUBlastX LINE_L1-Tx1 119541 119753 43 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LTR_Ngaro 83439 83783 141 - . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LTR_Ngaro 83777 84211 142 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 360466 360771 72 + . . . . . -1 -1 -1 . . . scaffold227 WUBlastX DNA_TcMar-Marin 316230 316511 166 + . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX DNA_hAT 197646 198398 294 - . . scaffold1125 GLEAN mRNA 189933 228052 0.366465 - . ID=CGI_10012338; C15326 WUBlastX LTR_Copia 1 294 352 + . . . . . -1 -1 -1 . . . C35794 WUBlastX LINE_L2 13174 13443 118 - . . . . . -1 -1 -1 . . . C26460 WUBlastX LTR_Ngaro 2316 2459 47 + . . . . . -1 -1 -1 . . . C30292 WUBlastX LTR_Ngaro 1554 1973 232 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_hAT-Ac 363312 363725 123 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX RC_Helitron 169170 169328 25 - . . . . . -1 -1 -1 . . . scaffold38448 WUBlastX RC_Helitron 46116 47510 124 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_Kolobok-IS4 601457 601798 106 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 459007 459192 98 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 459604 459864 93 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 460594 460731 102 - . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_RTE-X 8896 9258 145 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold500 WUBlastX LINE_RTE-BovB 68193 68429 159 + . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LINE_RTE-BovB 68386 69117 153 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_RTE-X 151467 151982 228 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_L1-Tx1 754485 755039 73 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_L1-Tx1 755475 755654 24 + . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_CR1-L2 259651 260139 22 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold1249 WUBlastX LINE_CR1-L2 260138 260662 249 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold43708 WUBlastX LINE_L2 237762 238427 293 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold1603 WUBlastX LTR_Pao 331952 332011 40 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1475 WUBlastX LINE_L1 86914 87078 77 - . . . . . -1 -1 -1 . . . C35794 WUBlastX LINE_L2 14339 15178 131 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX DNA_En-Spm 159261 159440 132 + . . scaffold1647 GLEAN mRNA 157870 163808 0.957006 - . ID=CGI_10008141; scaffold1647 WUBlastX DNA_En-Spm 159439 159855 204 + . . scaffold1647 GLEAN mRNA 157870 163808 0.957006 - . ID=CGI_10008141; scaffold1808 WUBlastX DNA_IS4EU 139732 140874 198 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L1-Tx1 1157 1291 25 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LTR_Ngaro 55188 55742 341 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_RTE-BovB 225007 225069 29 + . . . . . -1 -1 -1 . . . scaffold1380 WUBlastX LINE_RTE-X 49186 49866 312 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_RTE-X 152152 152463 70 + . . . . . -1 -1 -1 . . . scaffold858 WUBlastX LINE_RTE-X 7210 7932 101 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 115770 116231 138 + . . . . . -1 -1 -1 . . . scaffold41452 WUBlastX LINE_L2 63140 63463 140 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold591 WUBlastX LTR_Ngaro 552182 553006 218 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Gypsy-Cigr 10956 11219 116 + . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Gypsy 66473 66637 118 - . . . . . -1 -1 -1 . . . scaffold387 WUBlastX DNA_IS4EU 95115 95357 120 + . . . . . -1 -1 -1 . . . scaffold387 WUBlastX DNA_IS4EU 95765 96199 243 + . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX DNA_hAT-hATw 47463 48491 36 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-hATw 950997 952025 43 + . . scaffold619 GLEAN mRNA 949722 959476 0.544338 - . ID=CGI_10025794; scaffold1858 WUBlastX DNA_TcMar-Tc1 169442 169582 22 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1 134525 134662 54 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 383567 383743 129 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX DNA_Maverick 120904 121062 103 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_RTE-X 239511 240089 144 - . . . . . -1 -1 -1 . . . scaffold617 WUBlastX LINE_RTE-X 115143 116162 239 - . . scaffold617 GLEAN mRNA 115032 115994 0.999999 - . ID=CGI_10012723; scaffold1277 WUBlastX LINE_RTE-X 82723 82893 78 + . . scaffold1277 GLEAN mRNA 76656 92744 0.765999 - . ID=CGI_10008022; scaffold534 WUBlastX DNA_Sola 15087 16112 370 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_TcMar-Tc1 411882 412154 56 + . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LINE_L2 441856 441999 23 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 465205 465402 35 - . . . . . -1 -1 -1 . . . scaffold42214 WUBlastX LTR_Gypsy 15723 15797 33 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 431063 431755 222 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 431758 431814 27 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_RTE-X 87513 87587 27 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold243 WUBlastX RC_Helitron 13481 13903 384 - . . scaffold243 GLEAN mRNA 6831 23380 0.981358 - . ID=CGI_10006809; scaffold492 WUBlastX LINE_L2 268288 269298 264 - . . scaffold492 GLEAN mRNA 268203 287677 0.999027 + . ID=CGI_10024818; scaffold1424 WUBlastX LTR_Gypsy 30873 31055 126 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 38480 38716 115 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_L2 232984 233220 120 - . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX DNA_hAT-hATw 74670 75152 126 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1005626 1006756 179 - . . . . . -1 -1 -1 . . . scaffold674 WUBlastX LTR_Ngaro 14475 15158 206 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold42890 WUBlastX DNA_Sola 184025 185131 339 - . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold38898 WUBlastX LTR_Ngaro 2388 2597 134 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_L1-Tx1 53820 54761 82 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy-Cigr 797618 797779 56 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 343886 344263 122 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 345473 345808 72 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 345473 345808 72 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold41008 WUBlastX LTR_Ngaro 58701 59168 181 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_En-Spm 194466 194627 61 - . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LTR_Gypsy 15869 16192 173 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold619 WUBlastX DNA_IS4EU 464751 465968 316 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_DIRS 427922 428590 277 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_DIRS 428595 428720 47 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Ngaro 141531 141722 28 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_RTE-X 3650 3841 59 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 4122 4418 84 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; C32272 WUBlastX LINE_L1-Tx1 6966 7637 226 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_L1-Tx1 266708 268096 232 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold6 WUBlastX LINE_CR1 522630 523385 35 - . . . . . -1 -1 -1 . . . scaffold43366 WUBlastX LTR_DIRS 83570 83857 87 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Ngaro 157828 158202 127 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Ngaro 158271 158708 154 - . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 148175 148537 27 + . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX LINE_L1-Tx1 44465 44611 111 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; scaffold301 WUBlastX LINE_L1-Tx1 910931 912310 239 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 234709 235347 239 - . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_RTE-X 9276 9440 111 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold34282 WUBlastX LINE_RTE-X 15024 15875 323 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 848423 848455 20 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX DNA_TcMar-Tc1 152712 153215 174 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold736 WUBlastX LTR_Gypsy 46220 46693 90 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 235018 235227 50 - . . . . . -1 -1 -1 . . . scaffold43526 WUBlastX LTR_Pao 168354 169112 336 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LTR_DIRS 394143 394730 371 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_IS4EU 425912 426751 348 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX DNA_IS4EU 85109 85942 348 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 569223 569300 43 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold40856 WUBlastX LINE_Penelope 76800 77354 231 - . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_RTE-X 48592 48816 149 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Maverick 1457452 1458210 374 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_RTE-BovB 428223 428309 24 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX DNA_Maverick 202500 203090 352 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 202831 203238 129 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold933 WUBlastX LINE_RTE-X 322242 323891 210 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold34872 WUBlastX DNA_Sola 3287 3493 27 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_DIRS 327896 328648 372 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LTR_DIRS 82737 84845 354 - . . scaffold698 GLEAN mRNA 81586 93981 0.592995 - . ID=CGI_10020727; scaffold509 WUBlastX DNA_TcMar-Tc1 17073 17654 355 + . . scaffold509 GLEAN mRNA 496 19427 0.999716 - . ID=CGI_10018635; scaffold492 WUBlastX DNA_TcMar-Tc1 201627 202487 261 - . . scaffold492 GLEAN mRNA 196390 218275 0.791674 + . ID=CGI_10024813; scaffold1186 WUBlastX LINE_L1-Tx1 238333 238812 21 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold829 WUBlastX LINE_L1-Tx1 329061 329405 180 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_L2 147083 147295 150 + . . . . . -1 -1 -1 . . . scaffold41480 WUBlastX LINE_L2 114851 115369 88 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 277879 278697 433 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold471 WUBlastX LTR_Gypsy 256200 256337 57 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 256408 256572 87 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 256580 256708 67 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 256662 257204 232 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LTR_Gypsy 168368 168535 20 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_Gypsy 241500 241631 58 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold257 WUBlastX DNA_TcMar-Tc1 362239 362496 24 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Ngaro 600080 600889 307 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold1250 WUBlastX DNA_Sola 28213 28644 208 + . . . . . -1 -1 -1 . . . scaffold608 WUBlastX LINE_L1-Tx1 55627 55758 42 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 136422 136538 36 + . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_TcMar-Tc1 114799 115695 348 - . . . . . -1 -1 -1 . . . C36680 WUBlastX LINE_CR1 9207 9587 182 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 9659 9832 106 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 10596 10697 68 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 10720 11013 56 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold34888 WUBlastX LINE_L1 7858 7965 43 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 646364 646753 40 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 514025 514525 82 - . . . . . -1 -1 -1 . . . scaffold33832 WUBlastX LTR_Ngaro 4980 5102 50 + . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_Gypsy 12047 12712 39 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Harbinger 196776 197720 345 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 171787 172839 400 + . . . . . -1 -1 -1 . . . scaffold41480 WUBlastX LINE_L2 115160 115369 130 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_L1-Tx1 330585 331448 191 - . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold517 WUBlastX LINE_L1 199290 199436 46 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold535 WUBlastX LINE_RTE-X 582120 582485 83 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_RTE-X 216742 217044 28 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LINE_RTE-X 67513 67671 59 - . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LINE_RTE-X 343685 344854 257 - . . . . . -1 -1 -1 . . . scaffold37672 WUBlastX LINE_L1-Tx1 13926 14684 150 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Zator 12671 13783 391 + . . scaffold188 GLEAN mRNA 7770 17806 0.999204 + . ID=CGI_10009311; scaffold40916 WUBlastX LINE_L1 39879 39992 27 + . . scaffold40916 GLEAN mRNA 5250 52256 0.246631 + . ID=CGI_10004570; scaffold1189 WUBlastX LINE_L2 213591 214076 114 + . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LTR_DIRS 212581 213102 170 - . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LTR_DIRS 213145 213339 40 - . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LTR_DIRS 213341 213604 136 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX DNA_Harbinger 81280 81723 211 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_L1 147078 148313 186 + . . scaffold546 GLEAN mRNA 136572 153074 0.999871 - . ID=CGI_10020995; scaffold145 WUBlastX DNA_TcMar-Tc1 335434 335625 100 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 729128 729244 53 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 729303 729554 207 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 730004 730294 75 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 728854 729057 85 + . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX LTR_DIRS 7600 8250 151 - . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX LTR_DIRS 8576 8905 118 - . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX LTR_DIRS 9421 9813 47 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_TcMar-Tc1 196044 196397 72 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Pao 359966 360718 276 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Pao 360918 361409 32 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LTR_Ngaro 119624 120079 211 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L2 482905 483102 50 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold1601 WUBlastX LTR_Gypsy 254418 254693 100 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 393167 393478 125 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 82765 83112 179 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_RTE-X 420788 421354 284 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LINE_L1-Tx1 61940 62035 20 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold756 WUBlastX LTR_Pao 180315 180770 170 - . . scaffold756 GLEAN mRNA 174962 194451 0.721563 + . ID=CGI_10016458; scaffold290 WUBlastX LTR_Ngaro 511862 512101 100 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 115627 115674 32 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 116613 117092 146 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 117104 117343 207 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 117350 117514 94 + . . . . . -1 -1 -1 . . . scaffold815 WUBlastX DNA_hAT-hATw 19971 21215 420 - . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold1449 WUBlastX DNA_Helitron 176166 176585 67 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_RTE-X 251771 252346 86 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 56746 57120 208 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Maverick 57825 57941 37 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold40154 WUBlastX LTR_Ngaro 27520 28065 230 - . . scaffold40154 GLEAN mRNA 26301 32486 0.434456 - . ID=CGI_10003875; scaffold40154 WUBlastX LTR_Ngaro 28046 28267 146 - . . scaffold40154 GLEAN mRNA 26301 32486 0.434456 - . ID=CGI_10003875; C31724 WUBlastX LTR_Gypsy 4286 4474 81 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX RC_Helitron 436670 436882 58 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 437364 437846 168 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold448 WUBlastX LTR_Gypsy 379442 379771 73 - . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX LINE_RTE-X 38292 38960 79 + . . . . . -1 -1 -1 . . . C26626 WUBlastX LTR_Pao 2709 2957 177 - . . . . . -1 -1 -1 . . . C32516 WUBlastX LTR_Ngaro 6504 7595 432 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_DIRS 145462 146388 396 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 366227 367153 396 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 311120 312010 435 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 115151 115183 22 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_hAT-Tip100 750347 751045 446 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Maverick 236400 236594 80 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Maverick 236588 236707 84 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Tc1 197036 198028 402 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Gypsy 499867 500040 54 - . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX LTR_Gypsy 47211 47786 394 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_TcMar-Marin 19885 20007 37 + . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LINE_RTE-X 468889 470892 353 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX DNA_TcMar-Tc1 294643 294897 68 + . . . . . -1 -1 -1 . . . scaffold129 WUBlastX LINE_L1-Tx1 46077 46937 154 - . . . . . -1 -1 -1 . . . scaffold129 WUBlastX LINE_L1-Tx1 47275 47568 33 - . . . . . -1 -1 -1 . . . scaffold34106 WUBlastX LTR_DIRS 13222 14289 418 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold721 WUBlastX LTR_Ngaro 707986 708951 356 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_TcMar-Fot1 121460 123295 420 + . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX DNA_TcMar-Tc1 129963 130982 390 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_TcMar-Tc1 185850 186641 377 + . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX DNA_Academ 41079 41738 72 - . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX DNA_Academ 41751 42086 164 - . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX DNA_Academ 42089 42469 229 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LTR_Ngaro 93259 93717 166 + . . scaffold509 GLEAN mRNA 91758 98346 0.858612 - . ID=CGI_10018642; scaffold924 WUBlastX LTR_Gypsy 134984 135679 352 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LTR_Gypsy 117568 117699 75 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold329 WUBlastX LTR_Gypsy 254162 255439 476 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L1-Tx1 610395 611636 332 + . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_L1-Tx1 35840 37288 291 + . . . . . -1 -1 -1 . . . C30504 WUBlastX LINE_RTE-X 4493 5710 356 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 380923 381219 194 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 381240 381458 148 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 684842 685468 202 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LINE_L1-Tx1 216063 216650 62 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Pao 38424 40016 491 + . . scaffold1204 GLEAN mRNA 17672 38672 0.500149 - . ID=CGI_10009804; scaffold506 WUBlastX LTR_DIRS 521926 522030 52 + . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LTR_DIRS 522011 522730 385 + . . scaffold506 GLEAN mRNA 522445 523350 0.999997 + . ID=CGI_10019280; scaffold62 WUBlastX LTR_Gypsy 367511 368242 533 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 456049 456459 180 - . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold1500 WUBlastX LTR_Gypsy 68945 69037 20 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1 602983 603312 125 + . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_RTE-BovB 590164 590271 60 - . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_RTE-X 9458 9967 89 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold1307 WUBlastX LINE_L1-Tx1 190460 190636 113 - . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_L1-Tx1 86240 86722 102 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_CR1-L2 88429 89028 196 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy-Cigr 797157 797267 43 + . . . . . -1 -1 -1 . . . scaffold38190 WUBlastX LINE_RTE-X 1144 1968 220 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1 197054 197917 83 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_RTE-X 9833 10195 48 + . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LINE_RTE-X 54867 55193 225 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-BovB 811033 812457 383 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-BovB 812736 812906 52 + . . . . . -1 -1 -1 . . . C29248 WUBlastX DNA_Zator 2103 2627 72 + . . . . . -1 -1 -1 . . . scaffold41162 WUBlastX LTR_Gypsy-Cigr 89296 89577 147 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy-Cigr 89894 90043 132 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold43552 WUBlastX DNA_En-Spm 200235 201383 429 - . . . . . -1 -1 -1 . . . C29188 WUBlastX LTR_Gypsy 4345 6315 464 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX DNA_hAT-Tip100 102451 102801 147 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX DNA_hAT-Tip100 102734 103567 181 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX DNA_hAT-Tip100 103776 104192 159 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold450 WUBlastX LINE_L1-Tx1 125755 125934 91 - . . . . . -1 -1 -1 . . . scaffold450 WUBlastX LINE_L1-Tx1 126164 126736 115 - . . . . . -1 -1 -1 . . . scaffold450 WUBlastX LINE_L1-Tx1 126709 127071 183 - . . . . . -1 -1 -1 . . . scaffold1479 WUBlastX LTR_Gypsy 7657 7779 26 + . . . . . -1 -1 -1 . . . scaffold515 WUBlastX LINE_RTE-X 2732 3778 459 + . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-X 78223 79518 330 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LTR_DIRS 200491 201213 238 + . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy 90804 91028 95 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 254918 255358 382 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 28891 29961 377 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L1-Tx1 564591 566018 411 + . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LTR_DIRS? 3296 4108 540 + . . . . . -1 -1 -1 . . . scaffold38448 WUBlastX LINE_RTE-X 16549 18231 452 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1 547921 548379 304 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 394938 395507 116 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_RTE-X 1041 1730 57 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_L1-Tx1 410178 410417 60 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 53528 53764 31 - . . . . . -1 -1 -1 . . . scaffold1873 WUBlastX RC_Helitron 56072 56575 196 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1352 WUBlastX LINE_L1 335185 335373 84 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_RTE-X 55581 55922 64 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold321 WUBlastX DNA_Maverick 233255 233956 139 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 30759 31160 121 + . . . . . -1 -1 -1 . . . scaffold33610 WUBlastX LTR_Gypsy 6002 6181 147 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 1176011 1176055 20 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Gypsy 497649 498293 292 - . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1 325630 325878 125 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_R2-Hero 323724 324185 234 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX DNA_IS4EU 828906 829094 94 - . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 829055 829798 347 - . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 830177 830446 58 - . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold368 WUBlastX LINE_Penelope 441126 441734 143 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_Penelope 441536 443020 268 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LINE_L2 469919 470548 125 + . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LTR_Pao 186102 186671 150 - . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LTR_Pao 186668 186940 102 - . . . . . -1 -1 -1 . . . scaffold33618 WUBlastX LTR_DIRS 5672 6577 551 + . . . . . -1 -1 -1 . . . C25652 WUBlastX LTR_Gypsy 219 1034 568 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 265410 266252 193 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 266248 266646 134 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Maverick 56119 57111 522 + . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L1-Tx1 13832 15685 351 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold975 WUBlastX DNA_TcMar-Tc1 41290 42291 417 - . . scaffold975 GLEAN mRNA 37716 47437 0.999743 - . ID=CGI_10013314; scaffold177 WUBlastX LINE_Penelope 115813 116214 155 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_Penelope 116860 117276 182 - . . . . . -1 -1 -1 . . . scaffold35346 WUBlastX DNA_Maverick 18377 18835 76 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX DNA_TcMar-Tc1 136251 136853 210 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX DNA_TcMar-Tc1 136814 137155 155 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX DNA_TcMar-Tc1 137145 137246 68 + . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1 324993 325712 447 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 200927 201658 212 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 202190 202372 79 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 202626 202865 100 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 202829 203152 155 - . . . . . -1 -1 -1 . . . scaffold40442 WUBlastX LINE_L1 73809 75533 516 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-BovB 70159 70824 139 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-BovB 71921 72328 172 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_RTE-X 1084801 1086705 402 - . . . . . -1 -1 -1 . . . scaffold1723 WUBlastX DNA_TcMar-Tc1 156934 157929 424 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LINE_CR1-L2 470030 471748 425 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_En-Spm 52024 53325 199 - . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold274 WUBlastX DNA_En-Spm 53113 54228 302 - . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold1819 WUBlastX LTR_Gypsy 47241 47681 96 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 282764 283117 175 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_RTE-X 66834 67121 81 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L2 760964 761893 314 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 189715 189918 88 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 190426 190986 197 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 191009 191995 103 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 410802 412193 431 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold546 WUBlastX LINE_RTE-BovB 368578 369273 457 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-BovB 369788 369874 22 + . . . . . -1 -1 -1 . . . scaffold39974 WUBlastX LTR_Ngaro 65498 66418 598 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 5916 6410 67 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LINE_L1-Tx1 214935 215399 286 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LINE_L1-Tx1 215380 216075 225 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LINE_RTE-BovB 168174 168668 256 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 269235 269756 273 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_CR1-L2 8431 9195 444 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_CR1 263015 263476 383 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy-Cigr 176079 176678 514 - . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LTR_Gypsy 25289 25465 103 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold1108 WUBlastX LTR_Gypsy 565693 565920 32 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_RTE-X 66597 66839 97 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_RTE-X 66906 67184 72 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 499656 499925 20 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 18282 18410 39 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 182540 182980 230 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_DIRS 119157 120167 633 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 665703 665768 20 + . . . . . -1 -1 -1 . . . scaffold32546 WUBlastX LINE_L1 5946 8468 412 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-BovB 114994 115317 175 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 196528 196824 183 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 1040170 1040412 85 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold751 WUBlastX LINE_L1-Tx1 148807 149100 28 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1 63018 63728 29 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 101997 102464 92 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 102579 103082 213 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 103213 103368 154 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 103615 104055 234 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_L1-Tx1 330438 331217 262 - . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold689 WUBlastX LTR_Gypsy 30177 30668 161 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Ngaro 170347 170688 174 + . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX LINE_RTE-X 85953 86408 185 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold43552 WUBlastX LTR_Pao 69824 70312 459 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 12318 12521 33 - . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LTR_Gypsy 110388 110777 239 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Ngaro 9960 10562 359 - . . . . . -1 -1 -1 . . . C33308 WUBlastX DNA_Harbinger 12301 12402 87 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_IS4EU 36725 36925 58 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_IS4EU 37210 37299 44 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_IS4EU 38309 38755 334 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-X 424393 424602 30 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 65377 65436 31 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; C26018 WUBlastX LINE_RTE-X 104 703 135 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX LINE_RTE-X 108801 109400 135 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold971 WUBlastX LTR_Pao 63741 65039 214 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 633565 633705 29 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold152 WUBlastX LTR_Gypsy 177994 178662 378 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Gypsy 178893 179303 274 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Gypsy 179305 179427 88 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 85741 85854 83 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold41664 WUBlastX LTR_Pao 103736 105817 462 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 64302 66263 535 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_R2-Hero 327707 328615 710 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 598500 598982 84 + . . . . . -1 -1 -1 . . . scaffold1873 WUBlastX DNA_Helitron 58839 58892 20 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1154 WUBlastX LTR_Gypsy 391078 391251 178 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX LTR_Pao 118034 118411 80 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX LINE_CR1 141568 142482 746 - . . scaffold1119 GLEAN mRNA 133915 143385 0.654676 + . ID=CGI_10009604; scaffold1119 WUBlastX LINE_CR1 141568 142482 746 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold593 WUBlastX LTR_Gypsy 497777 498784 461 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 1080488 1080622 48 + . . . . . -1 -1 -1 . . . scaffold1191 WUBlastX LINE_L2 29843 31153 600 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L2 1568802 1570049 609 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1097629 1097850 53 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold773 WUBlastX LTR_Gypsy 270126 270350 82 + . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LTR_Gypsy 133313 133963 481 - . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L1-Tx1 70147 70245 36 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold43804 WUBlastX LINE_CR1-L2 83376 84872 653 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_CR1 403045 403572 295 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_CR1 404135 404395 97 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy-Cigr 18192 18428 27 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_L1-Tx1 26680 26730 37 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy-Cigr 146771 147760 381 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy-Cigr 147874 148038 139 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L2 803727 804572 430 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_DIRS 279113 281119 458 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 141026 141172 63 - . . . . . -1 -1 -1 . . . scaffold982 WUBlastX LINE_RTE-X 4152 5096 93 - . . . . . -1 -1 -1 . . . scaffold37064 WUBlastX LINE_L2 1200 1316 45 - . . . . . -1 -1 -1 . . . scaffold37064 WUBlastX LINE_L2 1307 1858 252 - . . . . . -1 -1 -1 . . . scaffold37064 WUBlastX LINE_L2 2742 3209 162 - . . . . . -1 -1 -1 . . . scaffold37064 WUBlastX LINE_L2 3163 3768 225 - . . . . . -1 -1 -1 . . . scaffold38056 WUBlastX LTR_Ngaro 51131 51568 304 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 203293 203775 274 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 203772 203981 142 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 203983 204447 151 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 204800 205156 312 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_hAT-Tip100 121858 122172 205 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_hAT-Tip100 122967 123389 307 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Pao 10884 11360 182 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold501 WUBlastX LTR_Gypsy 70299 71312 98 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1-Tx1 114032 114355 119 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_L1 775975 776385 58 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-hATw 624156 624590 29 + . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LINE_L1-Tx1 35870 36520 33 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Pao 147573 147869 194 - . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LINE_CR1 23213 23299 26 + . . . . . -1 -1 -1 . . . scaffold43366 WUBlastX LTR_DIRS 81049 83058 698 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_L2 169460 169771 184 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_L2 169771 170334 325 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_RTE-X 162975 164543 618 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LTR_DIRS 1019 1282 74 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LTR_DIRS 1309 2007 167 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LTR_DIRS 1989 2840 425 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LTR_DIRS 3038 3481 46 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1-Tx1 8609 8923 66 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1-Tx1 9110 9538 56 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1-Tx1 9547 10188 316 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1-Tx1 10169 10495 110 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 1303569 1304582 562 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 5910 6251 146 - . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX LTR_Gypsy 86256 87182 201 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold1698 WUBlastX LTR_Gypsy 76972 78702 563 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Sola 250566 250691 91 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Sola 251272 252060 353 - . . . . . -1 -1 -1 . . . scaffold35438 WUBlastX LINE_L1-Tx1 9886 10398 62 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold1024 WUBlastX LTR_Pao 159913 159957 22 + . . . . . -1 -1 -1 . . . C24036 WUBlastX LTR_Gypsy 2 1000 873 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy 406721 407155 185 - . . . . . -1 -1 -1 . . . C31978 WUBlastX RC_Helitron 8233 8904 34 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_L1-Tx1 16868 17470 241 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_L1-Tx1 17490 18035 390 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1-Tx1 292739 293344 204 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1-Tx1 293972 294370 193 + . . . . . -1 -1 -1 . . . scaffold130 WUBlastX LINE_RTE-X 8 346 218 + . . . . . -1 -1 -1 . . . scaffold130 WUBlastX LINE_RTE-X 303 1241 583 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_Gypsy 21770 22387 294 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_Gypsy 22393 23628 314 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_Gypsy 23949 24230 152 + . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX LINE_L2 101612 103081 719 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-X 56328 56654 195 + . . . . . -1 -1 -1 . . . scaffold912 WUBlastX LINE_RTE-X 50496 51146 143 + . . . . . -1 -1 -1 . . . scaffold912 WUBlastX LINE_RTE-X 51743 52378 402 + . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX DNA_Zator 64322 66634 746 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy 281822 283108 787 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy 281346 281471 48 + . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX LTR_Gypsy 14130 14639 64 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Gypsy 15058 16221 453 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold22 WUBlastX LTR_Gypsy 934158 934478 31 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold634 WUBlastX LTR_Pao 3203 4120 129 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 7423 7803 214 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy-Cigr 724428 726179 868 + . . scaffold501 GLEAN mRNA 690007 761178 0.748134 - . ID=CGI_10027530; scaffold660 WUBlastX LINE_Penelope 247713 249629 758 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_DIRS 35657 36340 235 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_DIRS 36366 37310 614 - . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_CR1-L2 475870 476808 410 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold1228 WUBlastX LINE_CR1-L2 476933 476995 31 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold42770 WUBlastX DNA_Harbinger 36191 37465 858 + . . . . . -1 -1 -1 . . . scaffold1195 WUBlastX LINE_L1-Tx1 287275 287721 408 - . . . . . -1 -1 -1 . . . scaffold1195 WUBlastX LINE_L1-Tx1 287762 288613 214 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX DNA_MuDR 130455 132092 665 + . . scaffold672 GLEAN mRNA 126321 133472 0.990434 + . ID=CGI_10021024; scaffold1521 WUBlastX LINE_RTE-X 126878 128053 257 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Pao 1494400 1495617 705 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 18969 19823 436 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LINE_RTE-BovB 41694 41855 106 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LINE_RTE-BovB 42652 42840 107 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy 49752 50366 268 + . . . . . -1 -1 -1 . . . scaffold1838 WUBlastX LINE_RTE-X 335846 336583 324 - . . scaffold1838 GLEAN mRNA 332958 349598 0.563165 + . ID=CGI_10014264; scaffold41786 WUBlastX LINE_CR1 56699 57016 151 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 234738 235214 91 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 234586 235167 273 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 56778 57527 427 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 539458 539670 50 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Pao 721931 722116 35 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Pao 485384 485584 46 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_L1 272457 272657 66 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Tc1 465020 465193 34 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_TcMar-ISRm1 164306 164524 91 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_L2 197155 197229 34 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_CR1 697145 697315 20 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold260 WUBlastX LINE_L2 32840 32923 27 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LINE_CR1 138566 138745 34 + . . scaffold385 GLEAN mRNA 126563 138970 0.944104 - . ID=CGI_10011596; scaffold1160 WUBlastX LINE_Rex-Babar 1497 1850 27 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LINE_CR1-L2 212336 212599 47 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_CR1-L2 172932 173534 38 - . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LINE_L2 17176 17586 37 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold100 WUBlastX LINE_CR1-L2 230246 230425 45 + . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_CR1-L2 164622 164837 41 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold61 WUBlastX LTR_DIRS 387499 387864 53 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_L2 850158 850667 35 + . . scaffold784 GLEAN mRNA 848886 854519 0.990187 - . ID=CGI_10024446; scaffold1214 WUBlastX LINE_L2 243224 243550 28 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold934 WUBlastX LTR_DIRS 264057 264536 60 + . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold204 WUBlastX LTR_Ngaro 299963 300190 63 + . . scaffold204 GLEAN mRNA 270844 308042 0.270192 - . ID=CGI_10026102; scaffold809 WUBlastX LTR_Gypsy-Cigr 54738 54935 72 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy 295546 295581 28 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LTR_Gypsy 138830 138931 42 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 62329 62538 84 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold12 WUBlastX LTR_Gypsy 351628 351786 31 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold1345 WUBlastX LTR_Gypsy 241565 241699 23 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1160 WUBlastX LTR_Gypsy 134690 134932 68 - . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Gypsy 29411 29998 83 + . . scaffold41242 GLEAN mRNA 28835 29434 0.478775 + . ID=CGI_10004880; scaffold41242 WUBlastX LTR_Gypsy 29411 29998 83 + . . scaffold41242 GLEAN mRNA 29519 30064 0.480836 + . ID=CGI_10004881; scaffold78 WUBlastX LTR_Gypsy 38878 38982 28 + . . scaffold78 GLEAN mRNA 33688 45299 0.504298 + . ID=CGI_10006914; scaffold35860 WUBlastX LTR_Gypsy 1042 1584 45 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 154097 154189 42 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 96982 97110 101 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold38058 WUBlastX LTR_Gypsy 4986 5513 59 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold308 WUBlastX DNA_Harbinger 207197 207364 54 + . . . . . -1 -1 -1 . . . scaffold308 WUBlastX DNA_Harbinger 208158 208241 23 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX RC_Helitron 192506 192850 22 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_hAT-Tip100 195324 195488 25 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; scaffold967 WUBlastX DNA_IS4EU 171870 172139 39 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_IS4EU 252932 253153 55 - . . . . . -1 -1 -1 . . . C27100 WUBlastX DNA_IS4EU 2356 2553 61 + . . C27100 GLEAN mRNA 2374 3198 0.994137 + . ID=CGI_10000343; scaffold39482 WUBlastX DNA_Kolobok-IS4 41477 41614 46 + . . . . . -1 -1 -1 . . . scaffold39482 WUBlastX DNA_Kolobok-IS4 41948 42037 39 + . . . . . -1 -1 -1 . . . scaffold36904 WUBlastX DNA_IS4EU 38156 38632 38 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_IS4EU 16220 16363 21 - . . scaffold1772 GLEAN mRNA 15531 17685 0.648545 - . ID=CGI_10014804; scaffold1866 WUBlastX DNA_IS4EU 143578 143640 21 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX DNA_IS4EU 143944 144078 22 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX DNA_IS4EU 144503 144628 32 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_IS4EU 17065 17277 30 + . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LINE_R2-Hero 397752 397895 74 - . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LINE_R2-Hero 397898 398179 20 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_L1-Tx1 1040831 1041172 26 - . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_L1-Tx1 76361 76501 55 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold157 WUBlastX LINE_L1-Tx1 657813 658292 38 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 97992 98477 66 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1277 WUBlastX LINE_L1 146195 146434 61 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1 602917 603207 53 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1 187844 188047 35 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1 167540 168184 48 + . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LINE_L1 172617 173039 67 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L1-Tx1 457707 457901 25 - . . . . . -1 -1 -1 . . . scaffold223 WUBlastX DNA_Kolobok-Hyd 2385 2657 21 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold533 WUBlastX DNA_TcMar-Tc1 25479 25709 62 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 458962 459204 25 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LINE_Penelope 128047 128274 44 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Penelope 11009 11242 81 - . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LINE_Penelope 254855 255109 32 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_Penelope 471642 472079 30 + . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold72 WUBlastX LINE_RTE-X 87642 87812 82 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_L2 133880 134104 69 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX DNA_TcMar-Fot1 28569 28832 79 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Fot1 154963 155022 28 + . . scaffold43242 GLEAN mRNA 154565 157582 0.118333 + . ID=CGI_10009546; scaffold247 WUBlastX LINE_RTE-BovB 204630 204800 37 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold663 WUBlastX LINE_RTE-BovB 21485 21727 61 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_Proto2 531626 531925 87 - . . . . . -1 -1 -1 . . . scaffold41380 WUBlastX LINE_RTE-BovB 67190 67609 32 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; C30728 WUBlastX LTR_Gypsy 7060 7842 53 - . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LINE_R2 65658 66335 31 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_Maverick 205250 205438 78 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_Maverick 601814 601930 63 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 82767 83120 73 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_PiggyBac 232765 233034 81 + . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LINE_RTE-X 106430 106687 42 - . . . . . -1 -1 -1 . . . scaffold43208 WUBlastX LINE_RTE-X 156508 156684 56 + . . . . . -1 -1 -1 . . . scaffold43208 WUBlastX LINE_RTE-X 156687 156803 23 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_DIRS 7785 7916 38 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_DIRS 7903 8037 31 - . . . . . -1 -1 -1 . . . scaffold1386 WUBlastX LTR_Gypsy 126618 126830 30 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 506734 506853 23 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 507840 507947 45 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_Harbinger 681366 681491 43 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold698 WUBlastX LINE_RTE-X 51247 51423 67 - . . scaffold698 GLEAN mRNA 47494 76860 0.800424 + . ID=CGI_10020726; scaffold775 WUBlastX LINE_RTE-X 54527 54808 23 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 596612 596905 22 + . . . . . -1 -1 -1 . . . scaffold775 WUBlastX LINE_L1-Tx1 133190 133414 41 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_L1-Tx1 117114 117743 74 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_L1-Tx1 80270 80506 43 + . . . . . -1 -1 -1 . . . scaffold36426 WUBlastX LTR_Gypsy-Troyk 70 219 48 - . . . . . -1 -1 -1 . . . scaffold36426 WUBlastX LTR_Gypsy-Troyk 248 433 46 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_DRE 506495 506950 72 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-Tc1 866225 866392 63 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc1 1079920 1080114 30 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold38990 WUBlastX LINE_CR1 63122 63745 23 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L2 141970 142095 20 + . . . . . -1 -1 -1 . . . scaffold1646 WUBlastX LINE_CR1 48900 49370 56 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L2 35132 35443 75 + . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold1329 WUBlastX LINE_L2 34187 34525 21 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1-L2 399826 400074 47 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold43244 WUBlastX LINE_CR1 26050 26121 21 - . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L2 24556 24645 28 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_CR1 128738 129019 74 - . . . . . -1 -1 -1 . . . scaffold718 WUBlastX LINE_L2 16402 16797 43 + . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LINE_L2 49078 49407 28 - . . . . . -1 -1 -1 . . . scaffold34222 WUBlastX LINE_L2 12440 12709 86 + . . . . . -1 -1 -1 . . . scaffold43240 WUBlastX LINE_L2 96055 96525 52 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_CR1 215635 216009 43 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L2 1257970 1258149 31 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 666288 666647 34 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1 175620 175724 25 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_hAT-Tip100 894899 895255 56 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold733 WUBlastX LINE_L1 891211 891777 74 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold275 WUBlastX LINE_L1 153371 153535 74 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Copia 397143 397232 20 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold833 WUBlastX LTR_Gypsy 368537 368794 24 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold591 WUBlastX LTR_Gypsy 102080 102481 48 - . . scaffold591 GLEAN mRNA 101702 102166 0.996819 - . ID=CGI_10027554; scaffold591 WUBlastX LTR_Gypsy 102080 102481 48 - . . scaffold591 GLEAN mRNA 102447 114989 0.352187 + . ID=CGI_10027555; scaffold1132 WUBlastX LTR_Gypsy 720247 720516 81 - . . scaffold1132 GLEAN mRNA 715893 721077 0.813716 - . ID=CGI_10023330; scaffold42836 WUBlastX LTR_Gypsy 111934 111987 28 + . . scaffold42836 GLEAN mRNA 101715 122664 0.986039 + . ID=CGI_10007860; scaffold1738 WUBlastX LTR_Gypsy 5996 6190 60 + . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LTR_Gypsy 306343 306492 39 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 32779 33009 43 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LTR_Ngaro 1723 2118 21 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 481715 482002 56 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold77 WUBlastX LTR_DIRS 1609731 1609889 57 + . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX DNA_Crypton 128802 128945 52 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX DNA_Crypton 151372 151818 49 - . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold38382 WUBlastX DNA_Crypton 31109 31555 49 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX DNA_Crypton 97686 98132 49 + . . scaffold43648 GLEAN mRNA 97566 98484 0.502547 + . ID=CGI_10011584; scaffold594 WUBlastX DNA_Crypton 228948 229394 49 + . . scaffold594 GLEAN mRNA 228261 229439 0.291493 + . ID=CGI_10016380; scaffold619 WUBlastX DNA_Crypton 1042927 1043259 73 - . . . . . -1 -1 -1 . . . scaffold1861 WUBlastX DNA_Crypton 40283 40729 49 + . . scaffold1861 GLEAN mRNA 33431 44819 0.661012 + . ID=CGI_10004669; scaffold867 WUBlastX LINE_L2 477754 477936 64 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_L2 258882 258998 41 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_DIRS 13836 14108 48 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_DIRS 14444 14749 45 + . . . . . -1 -1 -1 . . . scaffold1404 WUBlastX LTR_Ngaro 154396 154479 49 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Ngaro 581636 581824 35 + . . scaffold601 GLEAN mRNA 573889 582293 1 - . ID=CGI_10026837; C20324 WUBlastX LTR_Ngaro 272 625 54 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 323966 324106 76 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_IS4EU 500643 500900 38 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX RC_Helitron 50287 50715 89 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 141022 141138 40 - . . scaffold626 GLEAN mRNA 111038 155634 0.745946 - . ID=CGI_10019981; scaffold370 WUBlastX DNA_Harbinger 28206 28403 92 + . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_Harbinger 137780 137866 21 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 748824 749012 23 - . . . . . -1 -1 -1 . . . scaffold75 WUBlastX LTR_Gypsy 136391 136639 84 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX DNA_TcMar-Fot1 250366 250782 50 - . . scaffold308 GLEAN mRNA 250418 250642 0.999372 + . ID=CGI_10011014; scaffold395 WUBlastX LINE_Penelope 16370 16930 55 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX DNA_P 206906 207286 42 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX DNA_P 201507 201704 22 + . . . . . -1 -1 -1 . . . scaffold487 WUBlastX DNA_P 439977 440111 21 - . . scaffold487 GLEAN mRNA 428341 441144 1 + . ID=CGI_10017053; scaffold487 WUBlastX DNA_P 439977 440111 21 - . . scaffold487 GLEAN mRNA 439996 447135 0.39713 - . ID=CGI_10017054; scaffold487 WUBlastX DNA_P 440360 440506 71 - . . scaffold487 GLEAN mRNA 428341 441144 1 + . ID=CGI_10017053; scaffold487 WUBlastX DNA_P 440360 440506 71 - . . scaffold487 GLEAN mRNA 439996 447135 0.39713 - . ID=CGI_10017054; scaffold40952 WUBlastX LINE_Penelope 1910 2008 52 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_Kolobok 205168 205314 65 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1 978230 978364 20 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_L1 276042 276452 21 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_RTE-X 275647 275748 36 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 195841 196032 44 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 143472 143678 40 - . . scaffold3 GLEAN mRNA 140543 146890 0.72249 + . ID=CGI_10027280; scaffold1350 WUBlastX LINE_RTE-X 128665 128847 62 - . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_RTE-X 164090 164272 69 - . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_RTE-X 173372 173611 57 - . . scaffold445 GLEAN mRNA 165031 179035 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX LINE_RTE-X 173372 173611 57 - . . scaffold445 GLEAN mRNA 157494 175078 0.500104 + . ID=CGI_10019431; scaffold67 WUBlastX LINE_RTE-X 425481 425624 78 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 626425 626790 62 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_PiggyBac 608872 608943 25 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold619 WUBlastX DNA_Maverick 504451 504693 29 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_PiggyBac 390933 391202 67 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Maverick 128991 129341 84 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Fot1 271651 271869 86 - . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold128 WUBlastX LINE_Penelope 93295 93429 44 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold1476 WUBlastX LINE_RTE-X 4989 5108 51 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LINE_RTE-X 5117 5278 21 - . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX DNA_TcMar-Tigge 279216 279284 49 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_Sola 135871 136386 31 + . . scaffold1397 GLEAN mRNA 135079 136782 0.995825 + . ID=CGI_10017117; scaffold1816 WUBlastX DNA_TcMar-Tc1 19251 19733 78 + . . scaffold1816 GLEAN mRNA 19422 19805 0.999372 + . ID=CGI_10014391; scaffold459 WUBlastX DNA_TcMar-Marin 137484 137654 33 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold3 WUBlastX DNA_Sola 993645 993890 41 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 120770 121057 92 - . . . . . -1 -1 -1 . . . scaffold1818 WUBlastX LTR_DIRS 2532 2765 60 + . . . . . -1 -1 -1 . . . scaffold1818 WUBlastX LTR_DIRS 2871 2972 41 + . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 15525 15659 21 + . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_L1-Tx1 43884 44042 43 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_L1-Tx1 517505 517657 45 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold38466 WUBlastX DNA_Zator 16442 16645 66 - . . scaffold38466 GLEAN mRNA 5015 30508 0.999027 + . ID=CGI_10002798; scaffold38466 WUBlastX DNA_Zator 16782 16874 25 - . . scaffold38466 GLEAN mRNA 5015 30508 0.999027 + . ID=CGI_10002798; scaffold329 WUBlastX LTR_Pao 231960 232145 45 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Pao 232172 232225 37 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_TcMar-Tc1 56881 57078 21 + . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_TcMar-Ant1 13487 13858 102 + . . scaffold37880 GLEAN mRNA 2966 17075 0.52423 - . ID=CGI_10002532; scaffold32550 WUBlastX LINE_L2-Hydra 2949 3419 58 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L2 449656 449775 27 - . . . . . -1 -1 -1 . . . scaffold33412 WUBlastX LINE_CR1-L2 7049 7309 30 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L2 440569 441000 62 + . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_CR1 2041 2301 112 + . . . . . -1 -1 -1 . . . C27812 WUBlastX LTR_Ngaro 987 1937 65 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX DNA_En-Spm 415930 416049 49 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold432 WUBlastX DNA_Crypton 728706 729104 43 - . . scaffold432 GLEAN mRNA 728697 733393 0.995435 - . ID=CGI_10023120; scaffold36190 WUBlastX DNA_Crypton 20135 20335 68 - . . scaffold36190 GLEAN mRNA 19967 20329 1 + . ID=CGI_10001811; scaffold40556 WUBlastX LTR_Ngaro 11214 11372 79 - . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold630 WUBlastX LTR_Gypsy 269081 269194 59 - . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LTR_Gypsy 171093 171458 34 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1209687 1209758 22 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Gypsy 26157 26576 66 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LTR_Gypsy 281467 281667 26 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold1020 WUBlastX LTR_Gypsy 260780 260833 20 - . . . . . -1 -1 -1 . . . scaffold775 WUBlastX DNA_Harbinger 137667 138257 49 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy 28698 29204 60 - . . . . . -1 -1 -1 . . . scaffold382 WUBlastX RC_Helitron 48171 48254 25 - . . scaffold382 GLEAN mRNA 40511 73048 0.0752347 + . ID=CGI_10004503; scaffold382 WUBlastX RC_Helitron 48304 48549 27 - . . scaffold382 GLEAN mRNA 40511 73048 0.0752347 + . ID=CGI_10004503; scaffold402 WUBlastX DNA_hAT-Ac 278737 279012 98 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_hAT-hATx 211198 211335 24 - . . . . . -1 -1 -1 . . . scaffold43366 WUBlastX DNA_IS4EU 88218 88463 52 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_IS4EU 1222923 1223102 76 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1832 WUBlastX DNA_IS4EU 404699 405361 39 - . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX LINE_I 39243 39758 68 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LINE_Jockey 13664 13795 28 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LINE_L1-Tx1 46645 46887 43 - . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX LINE_L1-Tx1 275612 275785 76 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1 375628 376092 64 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1-Tx1 316787 317248 37 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold43686 WUBlastX LINE_L1 15381 15428 21 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold485 WUBlastX LINE_L1 289292 290146 24 + . . scaffold485 GLEAN mRNA 284170 290152 0.883286 + . ID=CGI_10024155; scaffold433 WUBlastX LINE_L1 687147 687464 57 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX DNA_Kolobok-Hyd 267400 267603 46 + . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX DNA_Kolobok 115214 115474 75 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold3 WUBlastX LINE_L1-Tx1 805736 805894 23 + . . scaffold3 GLEAN mRNA 805376 811617 0.747251 + . ID=CGI_10027304; scaffold532 WUBlastX LINE_L1-Tx1 257424 257615 31 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_Penelope 761780 762058 68 + . . . . . -1 -1 -1 . . . scaffold1654 WUBlastX LINE_Penelope 26211 26483 62 + . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX DNA_TcMar-Tc1 190259 190888 47 - . . scaffold43954 GLEAN mRNA 188330 194166 0.997744 + . ID=CGI_10014580; scaffold1788 WUBlastX DNA_Maverick 39819 40052 63 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_Maverick 408771 408959 33 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Maverick 137427 137882 39 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold1579 WUBlastX LINE_RTE-BovB 118170 118484 65 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-BovB 372806 373099 69 + . . . . . -1 -1 -1 . . . scaffold564 WUBlastX LINE_RTE-X 254093 254239 80 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_RTE-X 229556 229837 41 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232324 232605 41 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold1258 WUBlastX LINE_RTE-X 571037 571276 56 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_RTE-X 394376 394555 101 + . . scaffold622 GLEAN mRNA 388877 398399 0.998365 + . ID=CGI_10018214; scaffold40182 WUBlastX LINE_RTE-X 19805 19942 67 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold818 WUBlastX LINE_RTE-X 41973 42248 61 - . . . . . -1 -1 -1 . . . scaffold1488 WUBlastX LINE_RTE-X 96273 96482 53 + . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold39220 WUBlastX LINE_RTE-X 50086 50211 33 - . . . . . -1 -1 -1 . . . scaffold39220 WUBlastX LINE_RTE-X 50539 50727 61 - . . . . . -1 -1 -1 . . . scaffold371 WUBlastX LINE_RTE-BovB 91214 91723 84 - . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_RTE-X 74302 74826 72 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_Sola 11909 12502 57 - . . scaffold203 GLEAN mRNA 11885 13015 0.999039 - . ID=CGI_10021061; scaffold1337 WUBlastX LINE_RTE-X 135831 136022 51 + . . scaffold1337 GLEAN mRNA 120062 142795 0.333189 + . ID=CGI_10012833; scaffold631 WUBlastX LINE_RTE-X 325423 325578 39 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 625352 625765 67 + . . . . . -1 -1 -1 . . . scaffold894 WUBlastX LINE_L1-Tx1 183566 184030 35 + . . scaffold894 GLEAN mRNA 171936 185580 0.999624 + . ID=CGI_10008548; scaffold101 WUBlastX LINE_L1-Tx1 457152 457418 36 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX DNA_TcMar-Tc1 602801 603151 40 + . . . . . -1 -1 -1 . . . C12068 WUBlastX DNA_TcMar-Tc1 3 179 92 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_TcMar-Tigge 212308 212517 92 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LTR_Gypsy-Troyk 199145 199390 119 - . . . . . -1 -1 -1 . . . scaffold493 WUBlastX LINE_L1-Tx1 158591 158965 46 + . . scaffold493 GLEAN mRNA 158443 165350 0.999991 + . ID=CGI_10007250; scaffold1717 WUBlastX LINE_CR1 351477 351590 21 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_CR1 269292 269636 78 - . . . . . -1 -1 -1 . . . scaffold42570 WUBlastX LINE_CR1 16578 17018 39 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold737 WUBlastX LINE_CR1 92352 92387 25 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LTR_Gypsy 9077 9424 70 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_hAT-Tip100 443833 444126 83 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold955 WUBlastX LINE_RTE-BovB 120026 120406 68 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold1879 WUBlastX LTR_Gypsy 18987 19676 81 + . . scaffold1879 GLEAN mRNA 17088 26742 0.327022 + . ID=CGI_10007952; scaffold1214 WUBlastX LTR_Gypsy 383941 384216 35 + . . . . . -1 -1 -1 . . . scaffold42866 WUBlastX LTR_Gypsy-Cigr 159015 159437 85 + . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LTR_Gypsy-Cigr 192481 193242 32 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 79717 79881 80 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 79904 80365 41 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 224547 225095 94 - . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LINE_L2 178040 178363 95 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX DNA_Harbinger 569975 570310 112 - . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LTR_Gypsy 2726 3385 32 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 248761 249411 73 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Gypsy 504289 504660 43 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_TcMar-Tc1 102044 102613 80 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_TcMar-Tc1 694012 694581 80 - . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LINE_L1 44468 44803 36 + . . . . . -1 -1 -1 . . . scaffold387 WUBlastX LINE_L2 78480 78998 65 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_L2 293085 293603 65 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold1616 WUBlastX LINE_L2 70024 70686 49 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold1191 WUBlastX LINE_L2 31100 31198 22 - . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L2 113169 113597 83 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold424 WUBlastX LTR_Gypsy 65828 66082 34 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX DNA_MuDR 489637 490002 97 - . . scaffold413 GLEAN mRNA 489088 490056 0.995102 - . ID=CGI_10022805; scaffold1119 WUBlastX DNA_IS4EU 9044 9670 100 + . . . . . -1 -1 -1 . . . C34310 WUBlastX DNA_IS4EU 775 1458 20 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Kolobok 48449 49108 67 - . . scaffold1199 GLEAN mRNA 46410 49371 0.592263 - . ID=CGI_10005923; scaffold42704 WUBlastX LINE_L1-Tx1 82344 82460 22 - . . . . . -1 -1 -1 . . . scaffold194 WUBlastX LINE_L1 78701 78748 20 + . . . . . -1 -1 -1 . . . scaffold32550 WUBlastX LINE_RTE-X 3102 3488 78 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_RTE-X 182511 182669 92 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_RTE-X 216633 217184 42 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_RTE-X 274915 275181 72 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_RTE-X 42030 42353 48 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_RTE-X 724148 724759 33 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 133231 133530 25 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX DNA_Maverick 304013 304273 88 - . . . . . -1 -1 -1 . . . scaffold1674 WUBlastX DNA_Maverick 8436 8966 102 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 571150 571710 99 - . . . . . -1 -1 -1 . . . scaffold1680 WUBlastX LTR_Copia 74304 74582 20 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold394 WUBlastX LINE_RTE-X 466723 466971 36 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 526518 526709 59 - . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LINE_L1-Tx1 43743 44027 28 + . . . . . -1 -1 -1 . . . scaffold39198 WUBlastX LINE_L1-Tx1 27344 27811 41 - . . . . . -1 -1 -1 . . . scaffold39198 WUBlastX LINE_L1-Tx1 34877 35344 41 + . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX DNA_TcMar-Tc1 32063 32245 55 - . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX DNA_TcMar-Tc1 32473 32622 44 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_TcMar-Tc1 778397 778633 94 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_TcMar-Tc1 23682 23912 40 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 398100 398162 24 + . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX DNA_hAT 130672 130923 115 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold461 WUBlastX LTR_Pao 515285 515593 135 + . . scaffold461 GLEAN mRNA 510838 522193 0.712865 + . ID=CGI_10020118; scaffold163 WUBlastX LINE_L2 79841 79894 21 + . . . . . -1 -1 -1 . . . scaffold998 WUBlastX LINE_L2 123552 123821 62 + . . scaffold998 GLEAN mRNA 116508 131912 0.996071 - . ID=CGI_10006465; scaffold829 WUBlastX LINE_L2 172751 173020 88 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 772887 773156 62 + . . scaffold58 GLEAN mRNA 754646 777437 0.99883 + . ID=CGI_10023163; scaffold1449 WUBlastX LINE_L2 19237 19404 79 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_L2 19422 19535 20 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_CR1-L2 304091 304177 21 - . . . . . -1 -1 -1 . . . C30752 WUBlastX LINE_CR1-L2 6345 6509 21 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_Ngaro 749278 749712 78 + . . . . . -1 -1 -1 . . . scaffold43194 WUBlastX LTR_Ngaro 212648 213025 60 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LTR_Ngaro 151600 151998 110 - . . scaffold1743 GLEAN mRNA 140905 152865 0.926405 - . ID=CGI_10011655; scaffold1149 WUBlastX LTR_Ngaro 102451 102603 52 + . . . . . -1 -1 -1 . . . scaffold770 WUBlastX LTR_Gypsy-Cigr 147678 147887 53 - . . . . . -1 -1 -1 . . . scaffold34356 WUBlastX LTR_Gypsy 18167 18397 135 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_Gypsy 15657 15980 51 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold610 WUBlastX LTR_Gypsy 583437 583982 52 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold678 WUBlastX LTR_Gypsy 815672 815842 114 + . . scaffold678 GLEAN mRNA 797592 830433 0.957761 + . ID=CGI_10026382; scaffold21 WUBlastX LINE_L1 484 1158 82 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Harbinger 70887 70997 63 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Harbinger 71058 71474 30 + . . . . . -1 -1 -1 . . . scaffold38822 WUBlastX DNA_Harbinger 56477 56605 57 + . . . . . -1 -1 -1 . . . scaffold579 WUBlastX DNA_Harbinger 224049 224270 92 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX DNA_hAT-hATw 196058 196423 68 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_R2-Hero 204286 204609 92 + . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LINE_I 31886 31954 29 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_IS4EU 1724061 1724393 116 + . . scaffold1024 GLEAN mRNA 1693215 1725420 0.440752 - . ID=CGI_10028584; scaffold1797 WUBlastX LINE_Penelope 56176 56796 38 - . . . . . -1 -1 -1 . . . scaffold36866 WUBlastX LINE_Penelope 23570 23857 72 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Ngaro 777520 778104 35 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_TcMar-Marin 10770 11123 115 - . . . . . -1 -1 -1 . . . scaffold32230 WUBlastX DNA_TcMar-Pogo 5 508 102 - . . . . . -1 -1 -1 . . . scaffold503 WUBlastX LINE_RTE-BovB 139126 139491 74 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_Proto2 198803 199036 36 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 81703 81930 33 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_RTE-RTE 211658 211720 26 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_RTE-X 21853 21936 37 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-X 306587 306865 37 + . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_RTE-X 328725 328949 48 + . . scaffold1053 GLEAN mRNA 299038 331134 0.830467 - . ID=CGI_10014298; scaffold43878 WUBlastX LINE_RTE-X 322864 323034 39 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_RTE-X 968904 969008 32 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_RTE-X 969211 969513 31 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-X 306587 306781 41 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-X 306879 306947 29 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc2 222108 222317 48 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 132810 133055 60 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Copia 157734 157919 27 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_CR1-L2 142108 142416 83 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L2 76737 76823 34 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_L1 305122 305772 42 - . . scaffold165 GLEAN mRNA 293161 307887 0.249814 - . ID=CGI_10015330; scaffold392 WUBlastX LTR_Copia 90144 90902 96 - . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LTR_Gypsy-Cigr 40951 41145 91 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold1352 WUBlastX LTR_Gypsy-Cigr 85277 85570 131 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 472192 472950 93 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_CR1-L2 486019 486294 75 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Gypsy 695235 695357 130 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 849542 849946 101 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Gypsy 840286 841185 113 - . . . . . -1 -1 -1 . . . C8781 WUBlastX LTR_Gypsy 2 142 151 + . . . . . -1 -1 -1 . . . scaffold39384 WUBlastX LTR_Gypsy 6811 7017 76 + . . . . . -1 -1 -1 . . . scaffold39384 WUBlastX LTR_Gypsy 7017 7241 21 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 1302896 1303453 127 + . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX LTR_Ngaro 19114 19395 107 + . . . . . -1 -1 -1 . . . scaffold37816 WUBlastX LTR_Ngaro 32797 33006 100 + . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LTR_DIRS 349065 349229 45 - . . . . . -1 -1 -1 . . . C21306 WUBlastX DNA_Crypton 979 1281 119 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_Crypton 860134 860316 105 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Kolobok-IS4 223907 224467 26 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_Kolobok-IS4 105261 105521 56 - . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold610 WUBlastX DNA_Kolobok-IS4 106122 106217 26 - . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold610 WUBlastX DNA_Kolobok-IS4 106610 106813 24 - . . scaffold610 GLEAN mRNA 106328 109060 0.984177 - . ID=CGI_10021089; scaffold43538 WUBlastX DNA_hAT-Blackja 51566 51688 20 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Harbinger 308229 308372 72 - . . scaffold461 GLEAN mRNA 305250 311818 1 - . ID=CGI_10020109; scaffold461 WUBlastX DNA_Harbinger 309046 309222 27 - . . scaffold461 GLEAN mRNA 305250 311818 1 - . ID=CGI_10020109; scaffold33980 WUBlastX DNA_hAT-Tip100 2800 3525 20 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; C29022 WUBlastX LTR_Gypsy 2374 2574 38 + . . . . . -1 -1 -1 . . . scaffold40224 WUBlastX LTR_Gypsy 85406 85771 36 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 663920 664060 33 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold544 WUBlastX LINE_RTE-BovB 288765 288929 130 - . . scaffold544 GLEAN mRNA 248926 297755 0.519606 - . ID=CGI_10022553; scaffold453 WUBlastX LINE_RTE-BovB 10306 10470 130 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_TcMar-Marin 694547 694684 46 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 367575 367937 114 + . . . . . -1 -1 -1 . . . scaffold43194 WUBlastX LTR_Ngaro 212801 213025 78 + . . . . . -1 -1 -1 . . . scaffold43194 WUBlastX LTR_Ngaro 212991 213182 41 + . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX LINE_L1 4767 5231 91 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_Penelope 515318 515707 99 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Penelope 150975 151298 103 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_I-Nimb 185131 185829 80 - . . scaffold82 GLEAN mRNA 181182 187437 1 + . ID=CGI_10025244; scaffold43210 WUBlastX LINE_L1-Tx1 202524 202769 123 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1-Tx1 210776 211132 102 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold1259 WUBlastX LINE_L1 19306 19518 133 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold43 WUBlastX LINE_L1 417161 417811 98 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 337156 337461 75 + . . . . . -1 -1 -1 . . . scaffold130 WUBlastX LINE_RTE-X 2555 2818 56 - . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-X 452460 452756 72 + . . scaffold713 GLEAN mRNA 450558 455939 1 - . ID=CGI_10017762; scaffold660 WUBlastX LINE_RTE-X 337797 337982 107 + . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_RTE-X 2095 2787 77 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_RTE-X 98176 98319 86 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_RTE-X 234880 235023 86 - . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX LINE_RTE-X 74773 74910 23 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_RTE-X 393745 394077 83 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 82644 82967 107 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_L2 159567 159752 104 - . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold501 WUBlastX LINE_RTE-X 763569 764042 71 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-X 229585 229869 100 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_Sola 85411 85647 111 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_L1-Tx1 193823 194617 29 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L1-Tx1 3595 3978 84 + . . scaffold867 GLEAN mRNA 3265 13655 0.999351 + . ID=CGI_10026210; scaffold43302 WUBlastX LINE_L1-Tx1 218036 218257 95 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1-Tx1 155849 156214 87 + . . . . . -1 -1 -1 . . . scaffold1399 WUBlastX LINE_L1-Tx1 33517 33738 25 - . . scaffold1399 GLEAN mRNA 16276 39140 0.996608 + . ID=CGI_10007047; scaffold1571 WUBlastX LTR_Pao 273244 273456 72 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 27463 27756 49 + . . . . . -1 -1 -1 . . . C28722 WUBlastX LINE_Jockey 3608 3673 21 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1154121 1154333 94 - . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX DNA_hAT 16847 17023 150 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 16847 17023 150 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 14158 14343 121 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 14158 14343 121 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold41242 WUBlastX LTR_Pao 34487 34714 68 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_L2 87328 87537 33 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold4 WUBlastX LINE_CR1-L2 611361 611549 53 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_CR1 216957 217439 44 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold258 WUBlastX LINE_L2 589709 589993 145 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_CR1-L2 191768 192256 107 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_L2 222865 223134 52 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold115 WUBlastX LTR_DIRS 376404 376541 57 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Ngaro 1299549 1300124 81 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 354162 354584 77 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LTR_Gypsy 151983 152744 58 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 468344 468625 89 + . . . . . -1 -1 -1 . . . scaffold38672 WUBlastX LTR_Gypsy 41551 42759 145 - . . . . . -1 -1 -1 . . . scaffold40828 WUBlastX LTR_Gypsy 56938 57057 66 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold767 WUBlastX DNA_IS4EU 100757 101059 55 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX DNA_IS4EU 102014 102121 56 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1 401013 401231 79 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 162950 163498 71 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX DNA_Kolobok 209159 209353 86 + . . scaffold1816 GLEAN mRNA 205470 210228 0.819371 + . ID=CGI_10014402; scaffold1213 WUBlastX DNA_Kolobok 455799 456263 106 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Kolobok 32915 33220 139 + . . . . . -1 -1 -1 . . . scaffold31090 WUBlastX DNA_TcMar-Fot1 5005 5142 29 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LINE_Penelope 413019 413111 23 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LINE_CR1 485710 485811 21 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_Proto2 233195 234226 99 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; C25616 WUBlastX DNA_Maverick 315 674 55 + . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX LINE_RTE-BovB 56896 57267 45 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_RTE-X 197334 197831 33 - . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_RTE-X 328934 329065 68 + . . scaffold1053 GLEAN mRNA 299038 331134 0.830467 - . ID=CGI_10014298; scaffold982 WUBlastX LINE_RTE-X 6853 7206 79 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 32185 32280 24 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 33063 33272 59 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_RTE-X 657806 657937 33 + . . . . . -1 -1 -1 . . . C34846 WUBlastX LINE_RTE-X 3 398 124 - . . . . . -1 -1 -1 . . . scaffold251 WUBlastX LINE_RTE-X 15206 15601 76 + . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_RTE-X 78915 79286 27 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1-Tx1 837264 837371 39 + . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX RC_Helitron 40730 40801 25 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_L2 180975 181334 111 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_CR1-L2 57931 58008 36 - . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_CR1-L2 26528 26911 117 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LINE_CR1-L2 151639 152160 67 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1 537649 538080 87 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LINE_L2 96249 97073 76 - . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX LTR_Gypsy 84956 85282 96 + . . scaffold1427 GLEAN mRNA 83286 88793 0.375742 + . ID=CGI_10005230; scaffold38108 WUBlastX LTR_Ngaro 43218 43592 108 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 509420 509770 95 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX DNA_Crypton 27089 27277 46 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX RC_Helitron 684078 684629 86 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Harbinger 237661 237972 147 + . . . . . -1 -1 -1 . . . scaffold38974 WUBlastX DNA_Kolobok 20566 20655 61 - . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold82 WUBlastX DNA_Kolobok 755700 756089 97 - . . . . . -1 -1 -1 . . . scaffold35198 WUBlastX DNA_TcMar-Marin 20032 20475 120 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_Penelope 183136 183426 114 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 545756 546202 116 - . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LINE_L1-Tx1 198202 198477 139 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1-Tx1 216571 217209 92 - . . scaffold698 GLEAN mRNA 215942 226142 0.793097 + . ID=CGI_10020736; scaffold101 WUBlastX LINE_L1-Tx1 671309 671947 92 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_RTE-X 100226 100708 60 + . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_RTE-X 128936 129358 79 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX DNA_Maverick 216965 217234 85 + . . . . . -1 -1 -1 . . . scaffold41988 WUBlastX DNA_PiggyBac 97589 97825 74 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_RTE-X 458772 459347 73 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1 262566 262601 22 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_L1-Tx1 41470 42036 48 + . . . . . -1 -1 -1 . . . scaffold37092 WUBlastX LINE_L1-Tx1 26305 26751 73 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LTR_Pao 18201 18527 26 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold719 WUBlastX LTR_Pao 352488 352724 152 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold432 WUBlastX DNA_TcMar-Tc1 327230 327406 20 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_CR1 286381 286539 111 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L2 194480 195148 117 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold626 WUBlastX LINE_L2 286378 286569 83 + . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LTR_Ngaro 50756 51115 76 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX LINE_RTE-BovB 58359 58523 89 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 253297 253749 136 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 391078 391308 162 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 587237 587752 153 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX DNA_Harbinger 30551 30883 41 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Harbinger 84222 84398 36 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Gypsy 135613 135759 38 - . . . . . -1 -1 -1 . . . scaffold41346 WUBlastX DNA_IS4EU 44537 44815 128 + . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX LINE_L1 330108 330302 49 - . . . . . -1 -1 -1 . . . C28858 WUBlastX DNA_Kolobok 4036 4806 117 + . . . . . -1 -1 -1 . . . scaffold1548 WUBlastX LINE_Penelope 5525 5587 30 - . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX DNA_NOF? 54567 55118 106 - . . . . . -1 -1 -1 . . . scaffold941 WUBlastX DNA_TcMar-Marin 33384 33482 32 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_TcMar-Fot1 754173 754373 87 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_CR1 602070 602543 116 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 66159 66365 123 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold1788 WUBlastX DNA_Maverick 35206 35658 137 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX DNA_NOF 37466 37834 90 - . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX DNA_NOF 38055 38303 21 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 368479 368748 26 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 185313 185663 28 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold40606 WUBlastX LINE_RTE-X 9324 9680 55 - . . scaffold40606 GLEAN mRNA 7541 35661 0.834284 + . ID=CGI_10004278; C29974 WUBlastX LINE_RTE-X 2027 2245 141 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_RTE-BovB 1596953 1597213 162 + . . scaffold77 GLEAN mRNA 1579803 1600588 1 - . ID=CGI_10028048; scaffold39268 WUBlastX LTR_DIRS 33642 34208 92 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 375634 376809 23 + . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_CR1 48218 48409 75 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L1-Tx1 89000 89257 28 - . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_L1-Tx1 155094 155696 34 + . . . . . -1 -1 -1 . . . scaffold883 WUBlastX LINE_L2 5375 5701 93 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_hAT-Tip100 560638 560985 43 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Pao 357930 358913 109 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Pao 203336 203746 174 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Gypsy 677793 677915 20 - . . scaffold1024 GLEAN mRNA 661256 689203 0.701647 - . ID=CGI_10028542; scaffold406 WUBlastX LTR_Gypsy 69609 69980 155 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold612 WUBlastX LTR_Gypsy 76520 76582 36 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 132420 132596 23 - . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LTR_Gypsy 176308 176436 23 - . . . . . -1 -1 -1 . . . C34122 WUBlastX LTR_Gypsy 7592 8218 171 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Ngaro 118891 119142 140 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LTR_Ngaro 85369 85761 130 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_IS4EU 610553 610903 119 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_IS4EU 1080198 1080596 142 - . . scaffold1154 GLEAN mRNA 1080378 1140871 0.124336 - . ID=CGI_10026207; scaffold1138 WUBlastX RC_Helitron 194097 194135 25 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX DNA_hAT-hATw 34187 34585 79 + . . . . . -1 -1 -1 . . . scaffold38216 WUBlastX LINE_L1-Tx1 50933 51202 24 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L1 1215780 1216151 20 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_RTE-X 287390 287746 64 + . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LINE_RTE-BovB 267248 267583 26 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold1267 WUBlastX LINE_RTE-X 764059 764619 59 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_PiggyBac 460003 460416 55 + . . . . . -1 -1 -1 . . . scaffold61 WUBlastX DNA_Sola 191151 191297 70 + . . scaffold61 GLEAN mRNA 189931 192038 1 + . ID=CGI_10016347; scaffold61 WUBlastX DNA_Sola 191547 191753 43 + . . scaffold61 GLEAN mRNA 189931 192038 1 + . ID=CGI_10016347; C31324 WUBlastX DNA_TcMar-Tc1 3733 4116 46 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 337288 337545 87 + . . . . . -1 -1 -1 . . . scaffold1801 WUBlastX LTR_Ngaro 70580 71296 137 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 10157 10420 101 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L1-Tx1 1079898 1080824 65 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_L1-Tx1 114561 114758 66 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_L1-Tx1 10144 10356 41 + . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LINE_L1-Tx1 113348 113896 429 + . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LINE_L1-Tx1 113940 115535 269 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 320308 320445 40 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 320916 320948 20 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 320968 321468 274 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 92330 92995 83 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 104856 105716 79 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 107241 107579 186 + . . . . . -1 -1 -1 . . . C34010 WUBlastX LTR_Ngaro 11996 13189 624 + . . . . . -1 -1 -1 . . . scaffold33618 WUBlastX LTR_DIRS 3735 4232 117 + . . . . . -1 -1 -1 . . . C33436 WUBlastX RC_Helitron 2368 3216 365 + . . . . . -1 -1 -1 . . . C33436 WUBlastX RC_Helitron 3188 4222 537 + . . . . . -1 -1 -1 . . . C33436 WUBlastX RC_Helitron 4330 4758 55 + . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LTR_Gypsy 10962 13055 741 - . . . . . -1 -1 -1 . . . scaffold1266 WUBlastX LTR_Ngaro 59905 60351 306 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Gypsy 198881 202513 425 + . . scaffold1362 GLEAN mRNA 196782 238172 0.653945 - . ID=CGI_10023934; scaffold1525 WUBlastX LTR_Ngaro 355480 357045 932 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold36342 WUBlastX LINE_RTE-BovB 10400 11698 957 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LTR_Ngaro 152825 152989 95 + . . . . . -1 -1 -1 . . . scaffold34106 WUBlastX LTR_DIRS 11015 11173 38 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold44 WUBlastX LINE_L1-Tx1 157365 157601 26 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 158413 158604 33 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 159052 159567 408 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 159527 159940 118 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 159911 160828 125 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Pao 803577 804656 1045 - . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX LTR_DIRS 96787 97131 259 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_Gypsy 120699 121142 284 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120699 121142 284 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Gypsy 121484 122536 546 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 121484 122536 546 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold1314 WUBlastX LINE_L2 137628 137936 93 - . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LINE_CR1 63289 63528 51 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L2 322103 322171 23 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_L2 441747 442409 123 - . . scaffold583 GLEAN mRNA 412825 450410 0.995957 - . ID=CGI_10023625; scaffold38378 WUBlastX LINE_L2 9634 10251 136 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_L2 51175 51627 113 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_En-Spm 255306 255758 60 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Gypsy 171156 171701 139 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy-Cigr 104250 104708 140 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy-Cigr 458433 458879 141 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Ngaro 13067 13378 161 - . . . . . -1 -1 -1 . . . scaffold1056 WUBlastX LTR_DIRS 144321 144878 112 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_DIRS 295923 296051 56 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Ngaro 89361 89492 89 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 126045 126758 148 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LTR_Gypsy 45161 46081 126 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Harbinger 388059 388457 156 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Harbinger 598621 598761 58 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold35636 WUBlastX LTR_Gypsy 21574 21675 28 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 467331 467774 53 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Kolobok 222946 223215 134 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_L1 131870 131938 26 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold1843 WUBlastX LINE_L1 207346 207696 130 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L1 404506 404661 46 - . . . . . -1 -1 -1 . . . scaffold1260 WUBlastX DNA_TcMar-Tc2 120279 121370 140 + . . . . . -1 -1 -1 . . . scaffold1584 WUBlastX DNA_TcMar-Tc1 398287 398646 111 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_Merlin 572154 572672 128 + . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold616 WUBlastX DNA_PiggyBac 407455 407955 117 - . . scaffold616 GLEAN mRNA 405918 425935 0.924853 - . ID=CGI_10015408; scaffold38130 WUBlastX DNA_Maverick 28155 28556 110 - . . scaffold38130 GLEAN mRNA 25137 30326 0.998369 - . ID=CGI_10002636; scaffold37880 WUBlastX DNA_Maverick 29511 29948 150 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Maverick 201013 201372 105 - . . . . . -1 -1 -1 . . . C29974 WUBlastX LINE_RTE-X 3965 4327 145 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_RTE-X 218194 218505 166 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-X 87836 88318 105 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 633599 633835 154 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 7531 7848 162 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_RTE-X 555503 556090 67 + . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold1866 WUBlastX LINE_RTE-X 57996 58433 118 - . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LTR_DIRS 99273 99587 116 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LTR_DIRS 201080 201187 21 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold106 WUBlastX DNA_Sola 10970 11101 37 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 1189414 1190073 36 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold191 WUBlastX LINE_L1-Tx1 720076 720342 142 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_L1-Tx1 670189 670740 45 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1-Tx1 155744 156190 97 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Tc1 250226 250603 127 - . . scaffold1213 GLEAN mRNA 226891 261241 0.989794 + . ID=CGI_10027441; scaffold1249 WUBlastX LINE_L1-Tx1 248991 249086 63 - . . . . . -1 -1 -1 . . . C34546 WUBlastX DNA_Zator 7209 7655 147 - . . C34546 GLEAN mRNA 2511 14767 0.791633 - . ID=CGI_10001308; scaffold473 WUBlastX LTR_Gypsy 25216 25362 115 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_RTE-BovB 118611 120530 911 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy-Cigr 829689 829811 21 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 337539 338462 220 + . . . . . -1 -1 -1 . . . scaffold532 WUBlastX LINE_CR1 72700 73974 1019 - . . . . . -1 -1 -1 . . . scaffold41896 WUBlastX LINE_L2 28356 29618 332 + . . . . . -1 -1 -1 . . . scaffold41896 WUBlastX LINE_L2 29659 30378 418 + . . . . . -1 -1 -1 . . . C19818 WUBlastX LINE_RTE-BovB 3 899 1075 + . . . . . -1 -1 -1 . . . scaffold39394 WUBlastX DNA_Harbinger 31068 31238 36 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_DIRS 90522 91631 402 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_DIRS 91675 92187 334 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_DIRS 92199 92438 61 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_DIRS 92557 93168 161 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_CR1 452885 453589 515 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 649991 651130 1107 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1808 WUBlastX LTR_Ngaro 150318 151904 1011 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 350892 351869 750 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_CR1-L2 308862 309470 144 + . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LINE_RTE-BovB 112718 112978 181 + . . scaffold1780 GLEAN mRNA 107008 115035 0.543 - . ID=CGI_10014549; scaffold422 WUBlastX LTR_Gypsy 527565 528173 521 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 528137 528649 271 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 25019 25210 190 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 25216 25389 87 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 26567 27499 523 + . . . . . -1 -1 -1 . . . scaffold43278 WUBlastX LTR_Pao 233714 234550 257 - . . . . . -1 -1 -1 . . . scaffold38608 WUBlastX RC_Helitron 46490 47032 93 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 1027844 1029505 1099 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_RTE-X 111984 114047 851 + . . scaffold53 GLEAN mRNA 69197 125241 0.981118 + . ID=CGI_10026649; scaffold43920 WUBlastX LTR_Pao 5183 5497 179 - . . . . . -1 -1 -1 . . . C34458 WUBlastX LINE_CR1-L2 702 806 28 - . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_CR1 16836 17684 45 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_CR1-L2 39052 39126 28 - . . scaffold288 GLEAN mRNA 38387 49127 0.651135 + . ID=CGI_10020657; scaffold407 WUBlastX LINE_CR1-L2 15435 15632 29 + . . scaffold407 GLEAN mRNA 13072 17204 0.999998 + . ID=CGI_10002626; scaffold27 WUBlastX LTR_Gypsy-Cigr 57381 57971 166 + . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LTR_Gypsy-Cigr 70976 71455 187 + . . . . . -1 -1 -1 . . . scaffold161 WUBlastX LTR_Gypsy 110303 111367 139 + . . scaffold161 GLEAN mRNA 106688 117037 0.832376 + . ID=CGI_10008589; scaffold1244 WUBlastX LTR_Gypsy 127697 127909 125 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold266 WUBlastX LTR_Gypsy 276374 277573 39 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LTR_Ngaro 201093 202052 52 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_DIRS 25797 26234 101 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold895 WUBlastX LTR_Ngaro 114494 114604 25 - . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX DNA_hAT-Tip100 38986 39477 103 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 318099 318725 121 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 498578 498694 69 - . . . . . -1 -1 -1 . . . scaffold194 WUBlastX DNA_Harbinger 253985 254257 118 - . . scaffold194 GLEAN mRNA 249396 274108 0.709931 + . ID=CGI_10011068; scaffold194 WUBlastX DNA_Harbinger 254269 254337 65 - . . scaffold194 GLEAN mRNA 249396 274108 0.709931 + . ID=CGI_10011068; scaffold99 WUBlastX DNA_Kolobok-IS4 463126 463719 90 - . . scaffold99 GLEAN mRNA 460652 481021 0.928915 - . ID=CGI_10021208; scaffold1532 WUBlastX LTR_Ngaro 640868 641413 145 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold43782 WUBlastX DNA_TcMar-Fot1 9709 10047 167 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_TcMar-Tc1 87149 87376 87 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX DNA_TcMar-Tc1 87399 87713 61 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold58 WUBlastX DNA_TcMar-Fot1 433224 434105 155 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Fot1 72642 72848 93 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX DNA_Merlin 119856 120638 74 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1 116841 117050 33 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 391102 391500 141 - . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX LINE_L1 17343 17657 123 - . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX LINE_L1 17668 17748 32 - . . . . . -1 -1 -1 . . . scaffold752 WUBlastX LINE_RTE-X 15788 16276 137 - . . scaffold752 GLEAN mRNA 9483 39806 0.831804 + . ID=CGI_10010038; scaffold829 WUBlastX DNA_TcMar-Pogo 592586 592807 118 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold1480 WUBlastX LINE_R2 137670 138692 160 - . . scaffold1480 GLEAN mRNA 131830 138953 0.535981 - . ID=CGI_10008637; scaffold1476 WUBlastX LINE_RTE-X 172540 173721 54 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1736 WUBlastX LINE_RTE-X 627538 627669 46 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold37426 WUBlastX LTR_DIRS 4528 5301 25 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX DNA_Sola 681463 681798 176 + . . scaffold695 GLEAN mRNA 679649 687382 0.99962 - . ID=CGI_10023301; scaffold150 WUBlastX DNA_Sola 1270596 1271000 110 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 252570 252872 47 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_TcMar-Tc1 272418 272891 109 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 131426 131731 55 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy 75398 76990 413 - . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_Gypsy 24063 24983 460 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Maverick 135368 137122 546 + . . . . . -1 -1 -1 . . . scaffold1058 WUBlastX LTR_Gypsy 42994 43260 21 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_DIRS 422122 422493 233 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_DIRS 422865 423848 516 + . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy 57801 58250 308 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy 58580 59275 614 - . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_CR1 125328 125714 29 - . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LTR_Gypsy 47710 48177 385 - . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 22865 24775 358 + . . . . . -1 -1 -1 . . . scaffold1121 WUBlastX LINE_RTE-X 13999 17286 800 + . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX DNA_Academ 22981 24447 121 + . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_RTE-BovB 157126 158067 99 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_Pao 281163 281288 170 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Pao 1484005 1484427 92 + . . scaffold337 GLEAN mRNA 1483591 1485192 0.740205 + . ID=CGI_10028120; scaffold337 WUBlastX LTR_Pao 1484005 1484427 92 + . . scaffold337 GLEAN mRNA 1471928 1488134 0.608962 - . ID=CGI_10028119; scaffold101 WUBlastX LINE_L2 615096 615731 99 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_L2 5306 5965 94 - . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Gypsy-Cigr 307599 308135 183 - . . . . . -1 -1 -1 . . . scaffold604 WUBlastX LTR_Ngaro 124011 124400 173 + . . . . . -1 -1 -1 . . . scaffold1184 WUBlastX LTR_Ngaro 9068 9355 75 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX RC_Helitron 88215 88466 72 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX DNA_hAT-hATw 296099 296467 43 - . . . . . -1 -1 -1 . . . scaffold43036 WUBlastX DNA_hAT-hAT5 149188 149373 38 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold194 WUBlastX LINE_L1 80791 80841 22 + . . . . . -1 -1 -1 . . . scaffold41452 WUBlastX LINE_L1 85032 85076 23 + . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LINE_L1-Tx1 68151 68669 160 - . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX LINE_L1-Tx1 109982 110962 106 - . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LINE_RTE-X 357035 357307 146 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold1058 WUBlastX LINE_RTE-X 13782 14171 92 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-BovB 424140 424328 128 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-BovB 426079 426180 23 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX DNA_Sola 171618 171761 34 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-X 796801 797208 20 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold41358 WUBlastX DNA_TcMar-Tc1 110896 111117 154 + . . scaffold41358 GLEAN mRNA 104455 115098 0.650923 - . ID=CGI_10004976; scaffold1651 WUBlastX LINE_L1-Tx1 141962 142345 76 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_L1-Tx1 359605 359793 39 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 68241 68576 81 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LTR_Gypsy 32954 33493 354 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LTR_Gypsy 33501 34034 298 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX LTR_Gypsy 150493 151938 1007 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 158818 158994 146 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 47208 47768 37 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_RTE-X 271793 274405 843 + . . scaffold632 GLEAN mRNA 271859 278767 0.999129 + . ID=CGI_10018450; scaffold1601 WUBlastX LINE_RTE-X 3444 6233 862 - . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LINE_RTE-X 6319 6501 71 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Pao 200177 200539 46 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Pao 200612 202279 968 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1773 WUBlastX LTR_Gypsy 178040 178936 875 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LTR_Gypsy 179582 180001 252 - . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Gypsy 107254 107580 247 + . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LINE_RTE-BovB 125415 125822 451 + . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LINE_RTE-BovB 125815 126114 324 + . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LINE_RTE-BovB 126110 126760 486 + . . . . . -1 -1 -1 . . . scaffold38162 WUBlastX LTR_Gypsy 34588 35307 338 + . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX RC_Helitron 4220 4444 52 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 5928 6956 342 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 8282 9427 505 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold596 WUBlastX LINE_L1-Tx1 108033 108647 275 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1-Tx1 108623 109024 185 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1-Tx1 110305 110508 159 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1-Tx1 110640 111245 382 + . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX RC_Helitron 67291 67920 123 - . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX DNA_hAT 10319 10537 121 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold32282 WUBlastX LINE_CR1 642 917 83 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_En-Spm 282633 282938 163 - . . scaffold1525 GLEAN mRNA 276942 293191 0.993853 - . ID=CGI_10013865; scaffold1219 WUBlastX LTR_DIRS 619007 619798 158 - . . . . . -1 -1 -1 . . . scaffold770 WUBlastX DNA_Helitron 113212 113565 24 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_hAT-Tip100? 111791 111994 40 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 207150 207197 21 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold39268 WUBlastX DNA_Harbinger 40633 40989 204 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold1189 WUBlastX LINE_L1 636263 636313 21 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold935 WUBlastX LINE_RTE-BovB 77216 77908 120 + . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_RTE-X 129236 129919 81 + . . . . . -1 -1 -1 . . . scaffold1584 WUBlastX LINE_RTE-X 92034 92390 133 + . . scaffold1584 GLEAN mRNA 73868 96669 0.999351 - . ID=CGI_10015073; scaffold35070 WUBlastX DNA_PiggyBac 9846 10046 82 + . . . . . -1 -1 -1 . . . scaffold1718 WUBlastX LTR_DIRS 17914 18609 129 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LTR_Ngaro 216005 216547 131 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 282867 283391 105 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_Gypsy 47142 48815 726 - . . . . . -1 -1 -1 . . . scaffold1058 WUBlastX LTR_Gypsy 42247 42597 57 - . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX LINE_RTE-BovB 182552 184165 1285 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy-Cigr 134423 135502 508 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; C33952 WUBlastX RC_Helitron 5 2170 1102 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX RC_Helitron 228254 228670 73 + . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_L1-Tx1 184494 184733 111 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_CR1-L2 215492 216739 315 - . . . . . -1 -1 -1 . . . C33482 WUBlastX LINE_CR1-L2 4538 4942 28 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_CR1-L2 9098 9613 31 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold630 WUBlastX LTR_DIRS 491073 491228 32 + . . . . . -1 -1 -1 . . . C26612 WUBlastX DNA_Merlin 1818 1865 22 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX LTR_Pao 118989 119057 21 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Pao 160966 161244 104 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 597908 598534 206 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy 70281 71009 168 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 268423 268569 22 + . . . . . -1 -1 -1 . . . C26206 WUBlastX LTR_Gypsy 480 1322 138 - . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX DNA_hAT-hATw 88441 89232 73 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1 615068 615280 34 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LINE_Penelope 222506 223045 108 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_RTE-BovB 283504 283713 58 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_RTE-BovB 283719 283901 75 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 285983 286477 150 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LINE_RTE-X 477 1001 95 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LINE_RTE-X 1027 1140 28 - . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_RTE-X 79976 80305 97 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_RTE-X 164851 165063 93 + . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_RTE-X 57359 57601 32 + . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LTR_Ngaro 89229 89735 194 - . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX DNA_TcMar-Pogo 4201 4392 39 + . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX DNA_TcMar-Pogo 4379 4591 112 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 78756 79025 140 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 79151 79399 124 - . . . . . -1 -1 -1 . . . scaffold36664 WUBlastX LTR_Gypsy 24274 24672 61 + . . . . . -1 -1 -1 . . . scaffold36190 WUBlastX LINE_CR1-L2 16352 18565 769 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 219271 221250 908 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 200339 200611 190 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Gypsy 24134 24355 67 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_CR1-L2 1124993 1125322 55 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_CR1 340895 340993 55 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_CR1 472953 473015 20 - . . . . . -1 -1 -1 . . . scaffold1723 WUBlastX LINE_L2 65170 65556 212 - . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LINE_L2 75151 75603 135 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy-Gmr1 167949 168011 26 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy-Gmr1 168273 168383 26 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold867 WUBlastX LTR_Gypsy 621655 621993 146 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_DIRS? 52133 52432 185 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 177511 177648 21 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold41900 WUBlastX LINE_L2 89437 89679 77 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 157724 157906 100 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_hAT-hATw 544145 544198 22 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_hAT-Ac 72590 72697 71 + . . . . . -1 -1 -1 . . . scaffold37892 WUBlastX DNA_Harbinger 27934 28332 167 - . . . . . -1 -1 -1 . . . scaffold42096 WUBlastX DNA_Harbinger 106707 107078 196 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX DNA_Harbinger 106707 107078 196 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold43008 WUBlastX DNA_Harbinger 11610 12017 183 - . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold43608 WUBlastX LTR_Gypsy 204771 205304 99 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_L1 755195 755476 57 + . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX LINE_L1 51683 52114 24 - . . . . . -1 -1 -1 . . . scaffold1565 WUBlastX LINE_L1-Tx1 6825 7412 29 - . . scaffold1565 GLEAN mRNA 460 9199 1 + . ID=CGI_10000778; scaffold1565 WUBlastX LINE_L1-Tx1 7429 7791 92 - . . scaffold1565 GLEAN mRNA 460 9199 1 + . ID=CGI_10000778; C33658 WUBlastX LINE_L1-Tx1 2651 2971 200 + . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LINE_RTE-BovB 317748 318371 78 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_RTE-X 316390 316953 165 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_RTE-X 240252 240803 135 + . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LINE_RTE-BovB 175833 176375 81 + . . scaffold474 GLEAN mRNA 173461 184050 0.256829 - . ID=CGI_10007598; scaffold474 WUBlastX LINE_RTE-BovB 176800 176931 56 + . . scaffold474 GLEAN mRNA 173461 184050 0.256829 - . ID=CGI_10007598; scaffold146 WUBlastX DNA_PiggyBac 968035 968163 90 + . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX DNA_Maverick 48557 49144 175 - . . scaffold1440 GLEAN mRNA 46324 69343 0.667435 - . ID=CGI_10008354; scaffold180 WUBlastX DNA_Maverick 76450 76908 139 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Maverick 526510 526953 149 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc2 1627208 1627699 161 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy 562660 563577 454 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 19321 20100 336 + . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L1-Tx1 70626 71621 350 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 72101 72505 296 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 72508 72807 158 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 73073 73813 279 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold177 WUBlastX RC_Helitron 193506 194204 255 + . . . . . -1 -1 -1 . . . scaffold41998 WUBlastX LINE_RTE-BovB 41658 42056 297 - . . scaffold41998 GLEAN mRNA 32389 44944 0.999949 - . ID=CGI_10005911; scaffold1244 WUBlastX LTR_Ngaro 440085 440414 222 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 410478 410873 117 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 410876 411022 81 + . . . . . -1 -1 -1 . . . scaffold32550 WUBlastX LTR_Ngaro 63 479 147 - . . . . . -1 -1 -1 . . . scaffold32550 WUBlastX LTR_Ngaro 491 598 29 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_Kolobok-IS4 424436 425509 145 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 608285 608647 23 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_Harbinger 364909 365388 170 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 265736 266452 133 - . . . . . -1 -1 -1 . . . scaffold775 WUBlastX DNA_Merlin 128605 129036 140 + . . scaffold775 GLEAN mRNA 127511 130349 0.997009 + . ID=CGI_10006094; scaffold351 WUBlastX LTR_Ngaro 225852 226052 109 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Ngaro 226269 226469 109 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Ngaro 25613 25813 109 + . . scaffold499 GLEAN mRNA 22718 44589 1 + . ID=CGI_10015760; scaffold479 WUBlastX LINE_RTE-X 234829 235023 79 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_RTE-X 98176 98370 79 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_Maverick 408449 409075 105 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 208168 208389 30 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1435304 1435993 125 + . . . . . -1 -1 -1 . . . C34200 WUBlastX LINE_L1-Tx1 1124 1264 80 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy-Cigr 1095030 1095104 25 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold70 WUBlastX LINE_RTE-BovB 159660 160211 442 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-BovB 160208 161350 417 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-BovB 161334 161492 124 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-BovB 161476 162015 295 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-BovB 162009 162356 216 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 18583 20100 215 + . . . . . -1 -1 -1 . . . scaffold39050 WUBlastX LINE_L1-Tx1 53224 53439 57 - . . . . . -1 -1 -1 . . . scaffold39050 WUBlastX LINE_L1-Tx1 53417 54322 525 - . . . . . -1 -1 -1 . . . scaffold39050 WUBlastX LINE_L1-Tx1 55684 56307 322 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_L2 429198 431732 1382 - . . scaffold672 GLEAN mRNA 429192 430364 0.999999 - . ID=CGI_10021041; scaffold1255 WUBlastX LTR_Gypsy-Cigr 396222 396449 144 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy-Cigr 396469 396747 86 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold613 WUBlastX LTR_Gypsy 93391 93888 81 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_CR1 596769 597530 154 + . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LINE_L2 161555 161818 91 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold88 WUBlastX LINE_L2 44706 44813 20 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LTR_Gypsy 84152 84631 202 + . . . . . -1 -1 -1 . . . C28542 WUBlastX LTR_Ngaro 3007 3390 202 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 43134 44084 203 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_DIRS 359116 359310 127 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Ngaro 24052 24351 239 + . . scaffold1397 GLEAN mRNA 23367 24092 0.999994 + . ID=CGI_10017114; scaffold1397 WUBlastX LTR_Ngaro 24052 24351 239 + . . scaffold1397 GLEAN mRNA 22041 34038 0.684002 - . ID=CGI_10017113; C31096 WUBlastX LTR_Ngaro 6632 7126 210 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold1232 WUBlastX LINE_L2 402308 402406 30 + . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_Harbinger 163873 164010 60 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_Harbinger 670308 670439 44 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_Kolobok-IS4 54055 54108 23 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX RC_Helitron 18866 19228 97 + . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_L1 145352 145912 66 - . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1 170747 171073 177 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_L1-Tx1 58468 59514 71 - . . . . . -1 -1 -1 . . . scaffold200 WUBlastX LINE_Proto2 92454 92792 125 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Maverick 376283 376582 119 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_PiggyBac 282061 282405 108 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold227 WUBlastX LINE_RTE-X 231369 231752 51 + . . . . . -1 -1 -1 . . . scaffold227 WUBlastX LINE_RTE-X 231945 232940 100 + . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LINE_L1-Tx1 17543 17704 97 - . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX DNA_Maverick 131303 131503 187 - . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX DNA_Maverick 135382 135729 227 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 680767 682356 728 - . . scaffold419 GLEAN mRNA 671072 685906 0.998967 - . ID=CGI_10028358; scaffold681 WUBlastX LTR_Gypsy 373871 374290 232 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 68668 70221 930 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 246939 247727 79 + . . scaffold175 GLEAN mRNA 242942 249112 0.999907 + . ID=CGI_10021317; scaffold655 WUBlastX LINE_CR1 318302 318880 90 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold1836 WUBlastX LINE_CR1 126619 127179 198 + . . scaffold1836 GLEAN mRNA 121916 127717 0.992656 + . ID=CGI_10026268; scaffold459 WUBlastX LINE_L1 533762 534028 51 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_CR1 901907 902527 218 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_DIRS 471006 471266 114 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_DIRS 471299 471559 128 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 616086 616448 209 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_Ngaro 648723 649376 62 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold38026 WUBlastX LTR_Gypsy 25461 26642 151 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold446 WUBlastX LTR_Gypsy 193603 193704 29 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_hAT-Ac 86399 87430 195 + . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX DNA_IS4EU 739 1380 232 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 386394 386768 45 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Maverick 330956 331159 120 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 779265 779498 42 - . . scaffold619 GLEAN mRNA 775777 792970 0.999676 - . ID=CGI_10025785; scaffold658 WUBlastX LINE_RTE-X 301603 302496 87 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LINE_RTE-BovB 56962 57150 69 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_RTE-X 486989 487183 107 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_RTE-X 85561 86178 77 + . . scaffold630 GLEAN mRNA 80549 90707 0.970045 - . ID=CGI_10018325; scaffold203 WUBlastX LINE_RTE-X 628185 628388 89 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold351 WUBlastX DNA_Sola 315541 315825 48 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX RC_Helitron 117937 118194 151 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 924809 925246 76 + . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_L1-Tx1 44269 44361 62 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_Gypsy 94847 94966 40 - . . . . . -1 -1 -1 . . . scaffold39214 WUBlastX DNA_Academ 28747 30750 925 - . . scaffold39214 GLEAN mRNA 28615 29733 0.503937 - . ID=CGI_10003232; scaffold39214 WUBlastX DNA_Academ 31044 31478 294 - . . . . . -1 -1 -1 . . . scaffold39214 WUBlastX DNA_Academ 31526 32620 352 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX RC_Helitron 1025339 1027396 781 + . . . . . -1 -1 -1 . . . scaffold40476 WUBlastX LTR_Gypsy 20464 22647 1371 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_L1-Tx1 69879 70274 219 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_L1-Tx1 70429 71607 656 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_L1-Tx1 71922 73622 340 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_L1-Tx1 90380 90844 54 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_L1-Tx1 93012 94151 471 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_DIRS 862141 862623 146 + . . . . . -1 -1 -1 . . . scaffold42904 WUBlastX LTR_DIRS? 43592 43687 35 + . . scaffold42904 GLEAN mRNA 39898 45913 0.830856 + . ID=CGI_10008098; scaffold456 WUBlastX LTR_Gypsy 141968 142741 220 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold347 WUBlastX LTR_Gypsy 603175 603519 158 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 28415 28537 23 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_Penelope 311521 312660 114 - . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold1138 WUBlastX DNA_TcMar-Fot1 204309 205484 219 - . . . . . -1 -1 -1 . . . scaffold33704 WUBlastX DNA_Maverick 4539 5189 128 + . . . . . -1 -1 -1 . . . scaffold37032 WUBlastX LINE_RTE-X 745 933 22 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 218381 218659 53 + . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold35986 WUBlastX LTR_DIRS 13122 13367 141 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 13328 13573 68 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold1787 WUBlastX LTR_Gypsy 8474 10396 1257 - . . . . . -1 -1 -1 . . . scaffold1787 WUBlastX LTR_Gypsy 10243 10755 560 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Gypsy 287022 289283 1869 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LTR_Pao 98421 98618 158 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy-Cigr 436906 437202 198 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy-Cigr 437724 438209 63 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Ngaro 62536 63141 140 + . . . . . -1 -1 -1 . . . C34562 WUBlastX LTR_Ngaro 2817 2924 40 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 82928 83086 84 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 83116 83388 200 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Gypsy-Cigr 918330 918599 41 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy 42916 43611 227 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 492883 493149 124 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 493409 493543 60 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 494306 494425 97 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_Penelope 404881 405039 55 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold36526 WUBlastX LINE_L1 21217 21417 73 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold1832 WUBlastX DNA_IS4EU 404780 405268 236 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 512608 512775 60 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 512840 513133 178 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX DNA_Maverick 63132 63533 87 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 576298 576459 64 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold975 WUBlastX DNA_TcMar-Tc1 312292 312384 24 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_CR1 31322 31420 44 + . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX LINE_L2 292228 292494 85 + . . scaffold43964 GLEAN mRNA 291141 295582 1 - . ID=CGI_10014655; scaffold43964 WUBlastX LINE_L2 292484 292924 120 + . . scaffold43964 GLEAN mRNA 291141 295582 1 - . ID=CGI_10014655; scaffold474 WUBlastX LTR_Gypsy 185266 185901 282 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Gypsy 496651 496809 104 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 331267 331413 52 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Ngaro 87190 87420 62 - . . . . . -1 -1 -1 . . . C29576 WUBlastX LTR_DIRS 830 1258 47 - . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX DNA_Crypton 127614 128264 133 + . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX DNA_Crypton 128576 128926 95 + . . . . . -1 -1 -1 . . . scaffold1371 WUBlastX DNA_IS4EU 126608 127411 243 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok-IS4 175130 175915 181 - . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX DNA_Harbinger 14027 14311 240 - . . . . . -1 -1 -1 . . . C27100 WUBlastX DNA_IS4EU 3681 4328 229 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX DNA_IS4EU 24806 25345 242 + . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold1890 WUBlastX LINE_RTE-X 58887 60500 118 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc1 38104 38388 50 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 286046 286498 248 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_Maverick 465276 465614 54 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_Maverick 465667 466380 134 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LINE_RTE-X 115718 115843 79 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LINE_RTE-X 115816 116157 125 + . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L1-Tx1 95179 95406 91 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX DNA_TcMar-Tc1 573400 573678 98 - . . . . . -1 -1 -1 . . . scaffold37292 WUBlastX DNA_TcMar-Tc1 34717 35331 151 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LTR_Gypsy-Cigr 149860 151227 781 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold142 WUBlastX LINE_CR1 237398 238918 1294 + . . scaffold142 GLEAN mRNA 226750 254431 0.969071 + . ID=CGI_10026760; scaffold39790 WUBlastX LINE_CR1-L2 4401 5270 222 + . . . . . -1 -1 -1 . . . scaffold858 WUBlastX LINE_L2 15353 16606 167 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold867 WUBlastX LTR_Pao 603682 604200 178 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 210782 211402 213 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy 262675 263751 229 - . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LTR_DIRS 203046 203546 273 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_DIRS 511523 512446 193 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 471918 472619 232 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1-Tx1 15304 15768 193 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold102 WUBlastX LINE_L1 1229382 1229516 21 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_RTE-X 84145 84216 28 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_RTE-X 84335 84487 26 - . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_RTE-X 96922 97518 44 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LINE_RTE-X 244235 244675 54 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1653 WUBlastX LINE_RTE-X 6240 6575 64 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX DNA_Sola 38172 38339 57 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX DNA_Sola 38386 39396 128 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 484793 485029 156 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold22 WUBlastX LINE_L1-Tx1 810974 811264 107 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_L1-Tx1 99929 103570 1836 - . . . . . -1 -1 -1 . . . scaffold36790 WUBlastX LTR_Ngaro 26527 26805 129 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold712 WUBlastX LTR_Ngaro 164402 165310 52 + . . . . . -1 -1 -1 . . . scaffold387 WUBlastX LTR_Gypsy 33688 34419 295 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold40006 WUBlastX DNA_Harbinger 9285 9521 149 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_Kolobok-IS4 455388 455525 42 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_Kolobok-IS4 455698 455787 39 + . . . . . -1 -1 -1 . . . scaffold640 WUBlastX LINE_L1-Tx1 174901 175398 249 + . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_L1-Tx1 480045 480308 123 + . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_L1-Tx1 481241 481660 70 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_DIRS 24459 25178 118 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_DIRS 25207 25308 36 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_DIRS 25303 25590 85 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Sola 249870 250034 20 - . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX LINE_L1-Tx1 36822 38264 91 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Gypsy 1342356 1345124 1983 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_Helitron 222275 223096 79 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy-Cigr 429139 429456 160 + . . . . . -1 -1 -1 . . . scaffold41480 WUBlastX LINE_L2 115976 116149 63 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_CR1 223913 224593 243 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_CR1 185358 186026 244 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L2 71317 71583 76 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L2 71964 72206 162 - . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX DNA_Crypton 75669 76832 200 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold933 WUBlastX DNA_En-Spm 442066 442785 122 - . . scaffold933 GLEAN mRNA 438762 447503 0.391135 + . ID=CGI_10016727; scaffold933 WUBlastX DNA_En-Spm 442785 442904 119 - . . scaffold933 GLEAN mRNA 438762 447503 0.391135 + . ID=CGI_10016727; scaffold1307 WUBlastX DNA_hAT-hATw 348757 349440 78 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Gypsy 26331 26576 122 - . . . . . -1 -1 -1 . . . scaffold908 WUBlastX DNA_IS4EU 34277 34861 263 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L1 561322 561882 238 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L1 578661 579473 213 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 811896 812219 162 + . . scaffold433 GLEAN mRNA 810817 827461 0.351164 + . ID=CGI_10027093; scaffold337 WUBlastX DNA_Maverick 204574 205614 182 + . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_TcMar-Tc1 16398 17114 261 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 750795 754559 1932 + . . scaffold406 GLEAN mRNA 750169 761201 0.587095 + . ID=CGI_10023870; scaffold1403 WUBlastX LTR_Gypsy 32499 32912 233 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX RC_Helitron 223788 226907 1488 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 94025 94375 237 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_hAT-hATw 337352 337987 207 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_hAT-hATw 338091 338573 28 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_Kolobok-IS4 182168 182935 158 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 267006 267542 91 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_RTE-X 239114 239476 37 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_RTE-X 115146 115868 206 - . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX DNA_Sola 107976 109079 240 - . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LTR_Gypsy 137086 137481 273 + . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LTR_Gypsy 137481 139973 1588 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 55962 56114 139 - . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_CR1 30568 31266 257 + . . . . . -1 -1 -1 . . . scaffold38498 WUBlastX LTR_Ngaro 38379 39464 212 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX DNA_Harbinger 11327 11701 167 + . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX DNA_Harbinger 12165 12524 115 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 21530 21790 51 + . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX LINE_L1-Tx1 10340 10660 69 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_Penelope 140634 141110 225 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 116824 116973 28 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 224251 225297 205 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 130033 130848 198 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_RTE-X 77093 77395 168 + . . . . . -1 -1 -1 . . . scaffold38736 WUBlastX LINE_RTE-X 59173 60030 239 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX DNA_Sola 18815 19378 24 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX DNA_Sola 19401 20195 209 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L1-Tx1 47228 47767 266 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; C23248 WUBlastX LINE_L1-Tx1 860 1003 28 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LINE_L1-Tx1 142902 143135 41 + . . . . . -1 -1 -1 . . . C30238 WUBlastX LTR_Pao 1 573 596 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_DIRS 1117849 1118070 78 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Ngaro 583811 584512 169 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_TcMar-Tc1 873281 873499 47 - . . scaffold79 GLEAN mRNA 869143 880340 0.999287 - . ID=CGI_10024652; scaffold241 WUBlastX LINE_L1 856547 856675 58 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L1 204312 204809 23 - . . . . . -1 -1 -1 . . . scaffold40960 WUBlastX LINE_RTE-X 22231 22524 168 - . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LINE_L1-Tx1 135378 135710 32 - . . scaffold647 GLEAN mRNA 124845 138037 0.631256 + . ID=CGI_10006931; scaffold579 WUBlastX LTR_Gypsy 129841 132294 1698 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LTR_Pao 373519 373617 28 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Pao 161008 161934 298 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 930712 930951 63 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy 113948 114265 241 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_L1-Tx1 93345 93815 187 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_L1-Tx1 93811 94068 68 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX DNA_TcMar-Fot1 102140 102904 309 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_Penelope 324296 325357 195 + . . scaffold461 GLEAN mRNA 318338 325705 0.651135 - . ID=CGI_10020110; scaffold43964 WUBlastX LINE_Penelope 339249 339584 75 + . . scaffold43964 GLEAN mRNA 338636 342902 1 + . ID=CGI_10014661; scaffold1397 WUBlastX DNA_Sola 306534 306719 25 - . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LINE_CR1-L2 440188 440349 20 - . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX LINE_CR1 91842 91958 28 + . . . . . -1 -1 -1 . . . scaffold1163 WUBlastX LINE_L1 188657 189190 105 + . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold22 WUBlastX LTR_Gypsy 934583 934807 53 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold1362 WUBlastX LTR_Ngaro 545820 546410 114 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX DNA_Harbinger 96555 96992 178 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LTR_Gypsy 57519 57893 50 + . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_TcMar-Marin 374817 375110 113 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_TcMar-Fot1 219017 219169 42 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1 124806 125078 46 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold40492 WUBlastX LINE_RTE-BovB 44399 44875 59 + . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LINE_RTE-X 39180 39788 112 + . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-X 11467 11721 92 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_L1-Tx1 150920 151417 106 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold170 WUBlastX LTR_Pao 130320 130499 135 - . . . . . -1 -1 -1 . . . scaffold41400 WUBlastX LINE_L2 10074 10553 228 + . . . . . -1 -1 -1 . . . scaffold41400 WUBlastX LINE_L2 10571 10804 83 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_TcMar-Fot1 668920 670182 333 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 114909 115115 32 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 457803 457880 24 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_L2 89019 89435 181 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_L2 89743 89847 43 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 299626 299922 96 + . . . . . -1 -1 -1 . . . C34562 WUBlastX LTR_Ngaro 2849 3040 82 + . . . . . -1 -1 -1 . . . scaffold43108 WUBlastX LTR_Gypsy 124103 125479 322 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LTR_Gypsy 33090 33296 42 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 172453 172962 164 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_IS4EU 294670 295227 244 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_IS4EU 295167 295358 74 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX DNA_Harbinger 22971 23354 85 + . . scaffold186 GLEAN mRNA 23019 24333 0.349537 + . ID=CGI_10012601; scaffold186 WUBlastX DNA_Harbinger 23578 23826 219 + . . scaffold186 GLEAN mRNA 23019 24333 0.349537 + . ID=CGI_10012601; scaffold41436 WUBlastX LINE_L1-Tx1 52882 53631 286 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 549300 549494 56 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 629967 630230 79 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 630400 630840 125 - . . . . . -1 -1 -1 . . . scaffold34144 WUBlastX DNA_Maverick 5 541 320 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 474887 475285 310 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_Sola 73086 73322 69 + . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LTR_Gypsy-Cigr 148067 148840 292 - . . scaffold42392 GLEAN mRNA 146946 151067 0.782062 + . ID=CGI_10006786; scaffold933 WUBlastX LTR_Gypsy-Cigr 209296 209757 265 - . . . . . -1 -1 -1 . . . scaffold1070 WUBlastX LINE_L2 95927 96769 233 - . . scaffold1070 GLEAN mRNA 87834 98509 0.499838 - . ID=CGI_10004521; scaffold1217 WUBlastX LTR_Ngaro 51965 52324 196 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_DIRS 853399 853917 179 + . . . . . -1 -1 -1 . . . C18380 WUBlastX LTR_Gypsy 2 280 212 + . . . . . -1 -1 -1 . . . C18380 WUBlastX LTR_Gypsy 280 606 190 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_Penelope 282640 283005 85 + . . scaffold1004 GLEAN mRNA 274842 298566 0.682505 - . ID=CGI_10020767; scaffold38448 WUBlastX LTR_Ngaro 33487 34740 144 - . . scaffold38448 GLEAN mRNA 31492 37691 0.999937 + . ID=CGI_10002779; scaffold38448 WUBlastX LTR_Ngaro 34755 34985 62 - . . scaffold38448 GLEAN mRNA 31492 37691 0.999937 + . ID=CGI_10002779; scaffold364 WUBlastX LINE_RTE-X 708612 708941 37 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 239051 239389 38 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Pao 440943 442571 290 + . . scaffold150 GLEAN mRNA 440940 442586 0.995484 + . ID=CGI_10028609; scaffold1237 WUBlastX LTR_DIRS 261173 261391 101 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1077 WUBlastX LTR_Ngaro 168159 168257 48 + . . . . . -1 -1 -1 . . . scaffold40476 WUBlastX LTR_Gypsy 27101 27616 214 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX DNA_IS4EU 40543 41553 269 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 132188 132448 110 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_L1 84633 84791 67 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold145 WUBlastX LINE_RTE-BovB 1137805 1138182 206 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold576 WUBlastX LINE_RTE-X 108295 108543 85 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-X 407475 408044 96 + . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_RTE-X 456162 457511 228 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold106 WUBlastX LINE_Proto2 529683 531149 222 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_Pao 70635 70973 109 + . . scaffold1098 GLEAN mRNA 56507 72093 1 - . ID=CGI_10010795; C31300 WUBlastX LTR_Gypsy 7729 8472 24 - . . . . . -1 -1 -1 . . . C29106 WUBlastX LTR_Ngaro 2911 3225 207 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 228101 228829 203 - . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX DNA_Harbinger 15209 15376 105 - . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold39014 WUBlastX LINE_L1-Tx1 48568 49287 300 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Ngaro 358091 358678 331 - . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_RTE-X 40945 41202 145 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 3443 3820 198 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LINE_RTE-X 321701 322237 111 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold35466 WUBlastX DNA_TcMar-Tc1 18540 18758 96 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LTR_Pao 194894 195403 285 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_L2 169334 169771 114 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Gypsy 393918 394307 58 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold485 WUBlastX LINE_RTE-BovB 738980 739498 227 + . . scaffold485 GLEAN mRNA 737910 749557 0.981296 + . ID=CGI_10024192; scaffold485 WUBlastX LINE_RTE-BovB 738980 739498 227 + . . scaffold485 GLEAN mRNA 734638 750215 1 - . ID=CGI_10024191; scaffold1532 WUBlastX LTR_Gypsy 653658 653774 54 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L2 554184 555134 28 + . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX DNA_Harbinger 40167 40610 176 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_Harbinger 40729 40989 232 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold1104 WUBlastX LINE_R2-Hero 202570 203118 115 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 203132 203260 42 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 203376 204122 207 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_TcMar-Marin 551571 551957 230 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX DNA_TcMar-Marin 552447 552824 136 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold97 WUBlastX DNA_P 115395 115568 113 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LINE_RTE-X 273856 274179 53 - . . scaffold801 GLEAN mRNA 264907 277016 0.581073 - . ID=CGI_10024082; scaffold377 WUBlastX DNA_Maverick 9068 9316 77 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Maverick 178631 178993 100 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Maverick 179134 179481 92 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Maverick 179454 179651 60 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Maverick 179885 180427 121 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_Pao 71145 71708 270 + . . scaffold1098 GLEAN mRNA 56507 72093 1 - . ID=CGI_10010795; scaffold77 WUBlastX LINE_L1 400777 401067 105 - . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_TcMar-Pogo 51546 51641 34 + . . scaffold1888 GLEAN mRNA 49981 53887 0.998764 + . ID=CGI_10013292; scaffold962 WUBlastX LTR_Gypsy 12482 12856 41 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 375496 375876 81 - . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_RTE-X 97671 97904 81 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; C31270 WUBlastX LINE_L2 7967 8992 245 + . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1 324795 325127 79 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 425745 426668 355 - . . scaffold257 GLEAN mRNA 408517 430332 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_DIRS 425745 426668 355 - . . scaffold257 GLEAN mRNA 415447 429822 0.479397 + . ID=CGI_10027911; scaffold1721 WUBlastX DNA_IS4EU 2674 2886 91 - . . . . . -1 -1 -1 . . . scaffold1721 WUBlastX DNA_IS4EU 3044 3493 235 - . . . . . -1 -1 -1 . . . scaffold35866 WUBlastX DNA_IS4EU 6410 7243 364 + . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX DNA_Kolobok-IS4 2008 2796 385 + . . scaffold41898 GLEAN mRNA 1759 2697 1 + . ID=CGI_10005830; scaffold1016 WUBlastX LINE_L1-Tx1 306544 306672 96 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold1016 WUBlastX LINE_L1-Tx1 306665 307249 178 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold1016 WUBlastX LINE_L1-Tx1 308033 308197 39 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold914 WUBlastX LINE_RTE-X 55610 56446 256 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 282773 283249 125 + . . . . . -1 -1 -1 . . . scaffold34388 WUBlastX LINE_RTE-X 6997 8064 214 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Ngaro 1068017 1068898 336 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_TcMar-Fot1 218712 220184 386 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LINE_L1-Tx1 265571 266425 41 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1-Tx1 266617 266784 51 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold1174 WUBlastX DNA_IS4EU 928914 929780 180 - . . scaffold1174 GLEAN mRNA 917037 939462 0.964473 + . ID=CGI_10026072; scaffold1174 WUBlastX DNA_IS4EU 930297 930782 203 - . . scaffold1174 GLEAN mRNA 917037 939462 0.964473 + . ID=CGI_10026072; C29184 WUBlastX LINE_L1-Tx1 5907 6308 215 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L2 65785 66285 158 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-BovB 112645 113013 285 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-BovB 113022 113234 85 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LINE_L1-Tx1 532236 532544 26 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_L2 500728 501891 355 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 800375 800797 286 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_Penelope 61183 62289 331 - . . . . . -1 -1 -1 . . . scaffold41828 WUBlastX LINE_RTE-X 20080 21039 292 - . . scaffold41828 GLEAN mRNA 18916 30776 1 - . ID=CGI_10005672; scaffold4 WUBlastX LTR_Gypsy 673108 674175 382 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_RTE-X 420160 420789 85 - . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX DNA_hAT-hATw 48375 49889 213 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_TcMar-Marin 3192 3560 152 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_RTE-X 177133 178281 308 - . . scaffold1213 GLEAN mRNA 172328 179031 1 - . ID=CGI_10027439; scaffold61 WUBlastX LINE_RTE-X 224117 224476 156 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 381611 382150 97 + . . . . . -1 -1 -1 . . . scaffold42060 WUBlastX LINE_RTE-X 76284 76577 118 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1-Tx1 89286 89567 90 + . . . . . -1 -1 -1 . . . scaffold65 WUBlastX DNA_Zator 45349 45480 61 - . . . . . -1 -1 -1 . . . scaffold65 WUBlastX DNA_Zator 45946 46104 21 - . . . . . -1 -1 -1 . . . scaffold65 WUBlastX DNA_Zator 47003 47995 306 - . . . . . -1 -1 -1 . . . scaffold65 WUBlastX DNA_Zator 47961 48086 39 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 34025 34255 58 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 34337 34711 215 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 34735 34956 105 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 129026 129211 168 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 129235 129738 339 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX DNA_En-Spm 200226 201602 349 - . . . . . -1 -1 -1 . . . scaffold35346 WUBlastX LTR_Gypsy 7568 8125 345 + . . scaffold35346 GLEAN mRNA 1512 13526 0.901079 - . ID=CGI_10001477; scaffold35346 WUBlastX LTR_Gypsy 8115 8270 111 + . . scaffold35346 GLEAN mRNA 1512 13526 0.901079 - . ID=CGI_10001477; scaffold42740 WUBlastX DNA_Harbinger 76121 76294 22 - . . scaffold42740 GLEAN mRNA 65305 90130 0.999494 + . ID=CGI_10007608; scaffold42740 WUBlastX DNA_Harbinger 76121 76294 22 - . . scaffold42740 GLEAN mRNA 75816 93610 0.249736 - . ID=CGI_10007609; C26878 WUBlastX DNA_Harbinger 3142 3621 286 - . . . . . -1 -1 -1 . . . C34630 WUBlastX DNA_Harbinger 179 355 85 + . . . . . -1 -1 -1 . . . C34630 WUBlastX DNA_Harbinger 322 1041 262 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 114439 114615 26 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 116040 116186 63 + . . . . . -1 -1 -1 . . . scaffold878 WUBlastX LINE_L1-Tx1 10162 10872 391 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 422007 423194 134 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold933 WUBlastX DNA_Maverick 409261 410283 410 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 812248 813138 326 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 39834 40790 354 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LINE_RTE-X 2435 3964 318 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Ngaro 313892 314857 379 - . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX LINE_L1 85341 85538 33 + . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_RTE-X 158189 158287 66 - . . . . . -1 -1 -1 . . . C25178 WUBlastX LTR_Ngaro 573 1286 309 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LINE_L1-Tx1 59243 60109 213 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L1-Tx1 51772 52269 88 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold954 WUBlastX LTR_Ngaro 270785 271150 87 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 171165 172160 485 - . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX LINE_L1-Tx1 31299 32306 300 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_TcMar-Tc1 1953 2297 28 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_TcMar-Tc1 2266 2907 258 + . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX LINE_RTE-X 70886 71635 92 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_Harbinger 200906 201172 215 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_Harbinger 201335 201550 122 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_Harbinger 202247 202468 73 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 648739 648981 123 - . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LTR_DIRS 67713 68534 339 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 113753 114214 159 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 196032 196439 64 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_RTE-X 144681 144833 45 - . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX DNA_Maverick 99765 100601 305 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold935 WUBlastX LINE_L1-Tx1 112954 113436 131 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 88191 89120 213 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 222452 223138 50 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold222 WUBlastX LTR_Pao 87665 88114 146 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX DNA_En-Spm 365129 366055 280 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX DNA_En-Spm 366021 366413 175 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 474006 474449 54 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_TcMar-Marin 72989 73441 214 + . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-X 299290 299562 55 + . . scaffold1877 GLEAN mRNA 295978 306967 1 + . ID=CGI_10011963; scaffold1018 WUBlastX DNA_En-Spm 439001 439888 296 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX DNA_En-Spm 439001 439888 296 + . . scaffold1018 GLEAN mRNA 435432 442583 0.542495 - . ID=CGI_10019773; scaffold1018 WUBlastX DNA_En-Spm 439878 440300 126 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX DNA_En-Spm 439878 440300 126 + . . scaffold1018 GLEAN mRNA 435432 442583 0.542495 - . ID=CGI_10019773; scaffold38284 WUBlastX LTR_Gypsy 30913 31065 31 - . . . . . -1 -1 -1 . . . C28554 WUBlastX LINE_Penelope 4680 5672 491 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 559306 559650 64 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_L1-Tx1 94165 95193 436 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 200345 200518 48 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 201074 202072 412 + . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1350 WUBlastX LINE_RTE-X 397022 397750 188 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold39778 WUBlastX LINE_RTE-X 43460 43759 70 + . . scaffold39778 GLEAN mRNA 34210 51922 0.521329 + . ID=CGI_10003608; scaffold664 WUBlastX LINE_L1 205322 205714 100 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 288062 289141 445 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LTR_Gypsy 71166 71585 140 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LTR_Gypsy 71845 72093 105 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LTR_Gypsy 72093 72584 296 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_L1 148096 148245 44 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold1586 WUBlastX LINE_RTE-X 71021 71629 144 - . . . . . -1 -1 -1 . . . C23786 WUBlastX LINE_RTE-X 613 1401 185 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 678484 678573 49 - . . . . . -1 -1 -1 . . . scaffold41664 WUBlastX LTR_Pao 107234 109150 425 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 1075770 1075961 71 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L1-Tx1 11350 12948 319 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; C26486 WUBlastX LINE_Penelope 214 1056 280 - . . . . . -1 -1 -1 . . . scaffold770 WUBlastX DNA_PiggyBac 46959 47783 361 + . . . . . -1 -1 -1 . . . scaffold770 WUBlastX DNA_PiggyBac 47791 47871 32 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_RTE-X 2896 3642 148 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold1448 WUBlastX LINE_RTE-X 263714 264202 78 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_RTE-X 114350 115366 249 + . . scaffold968 GLEAN mRNA 110087 120737 0.425641 + . ID=CGI_10006297; scaffold1174 WUBlastX LINE_L1-Tx1 170160 170654 108 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold385 WUBlastX DNA_TcMar-Tc1 19362 20093 327 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_TcMar-Tc1 20102 20248 85 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L2 454463 454762 82 - . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LINE_CR1-L2 95737 96249 301 - . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LTR_Gypsy 21593 21805 134 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX RC_Helitron 330991 331068 45 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 468687 469403 134 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 470412 470969 111 - . . . . . -1 -1 -1 . . . C25748 WUBlastX LTR_DIRS 2282 2452 62 + . . . . . -1 -1 -1 . . . C25748 WUBlastX LTR_DIRS 2520 2843 127 + . . . . . -1 -1 -1 . . . C25748 WUBlastX LTR_DIRS 1178 1945 244 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Gypsy 443258 443959 550 - . . . . . -1 -1 -1 . . . scaffold43134 WUBlastX DNA_IS4EU 213753 213926 49 - . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 213753 213926 49 - . . scaffold43134 GLEAN mRNA 212178 214956 0.948909 - . ID=CGI_10008899; scaffold759 WUBlastX DNA_IS4EU 116451 117236 373 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_TcMar-m44 685266 685430 29 + . . scaffold481 GLEAN mRNA 661200 686862 0.995695 + . ID=CGI_10027232; scaffold733 WUBlastX DNA_TcMar-m44 217495 217659 29 - . . scaffold733 GLEAN mRNA 216063 223733 0.792042 - . ID=CGI_10025867; scaffold733 WUBlastX DNA_TcMar-m44 222494 222658 29 - . . scaffold733 GLEAN mRNA 216063 223733 0.792042 - . ID=CGI_10025867; scaffold1301 WUBlastX LINE_RTE-X 1049751 1051643 422 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_RTE-X 53859 54092 132 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold160 WUBlastX DNA_Maverick 486186 486365 30 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_CR1-L2 320503 320532 22 + . . scaffold767 GLEAN mRNA 315899 380131 0.808127 - . ID=CGI_10014850; C33084 WUBlastX DNA_hAT-hATw 5354 6823 486 + . . . . . -1 -1 -1 . . . scaffold1464 WUBlastX LTR_Gypsy 2558 2998 303 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold301 WUBlastX LINE_Penelope 627681 629021 467 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1-Tx1 45264 45581 29 - . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1-Tx1 45617 45937 71 - . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1-Tx1 46480 47286 329 - . . . . . -1 -1 -1 . . . C33496 WUBlastX LINE_RTE-X 4880 5350 120 + . . . . . -1 -1 -1 . . . C33496 WUBlastX LINE_RTE-X 5629 6408 214 + . . . . . -1 -1 -1 . . . C33496 WUBlastX LINE_RTE-X 6548 6823 21 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_RTE-X 616515 617753 412 - . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX LINE_RTE-X 87591 88391 150 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold38876 WUBlastX LTR_Gypsy-Troyk 59730 60317 108 - . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 60347 60511 160 - . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 60514 60849 263 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 384540 384602 29 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 385052 386116 211 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_DIRS 10593 11102 126 + . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_Gypsy 141585 141992 152 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold20 WUBlastX LTR_Gypsy 751002 751160 39 - . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX DNA_TcMar-Tc1 103657 103773 31 - . . scaffold1738 GLEAN mRNA 101617 114566 0.999676 + . ID=CGI_10008970; scaffold579 WUBlastX LINE_RTE-BovB 267251 267442 93 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 268333 268611 202 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 268604 269386 186 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold41648 WUBlastX DNA_Maverick 87778 88617 429 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 1258801 1259961 286 + . . . . . -1 -1 -1 . . . scaffold37732 WUBlastX LINE_L1-Tx1 2516 4048 357 + . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LINE_CR1 40562 40645 20 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_L1 153983 155566 315 - . . scaffold712 GLEAN mRNA 144650 156180 1 + . ID=CGI_10016478; scaffold383 WUBlastX LTR_Pao 73843 74016 61 - . . . . . -1 -1 -1 . . . C31156 WUBlastX LTR_Gypsy 8667 8864 148 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L1-Tx1 50855 51742 259 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1896 WUBlastX LINE_L1 161822 161929 40 - . . . . . -1 -1 -1 . . . scaffold38010 WUBlastX LINE_RTE-X 35072 36268 480 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 648619 648921 174 + . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LTR_DIRS 138732 139592 143 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold714 WUBlastX DNA_TcMar-Tc1 88003 88404 187 - . . scaffold714 GLEAN mRNA 72326 94511 0.727136 + . ID=CGI_10016640; scaffold714 WUBlastX DNA_TcMar-Tc1 88340 88702 103 - . . scaffold714 GLEAN mRNA 72326 94511 0.727136 + . ID=CGI_10016640; scaffold714 WUBlastX DNA_TcMar-Tc1 88707 88901 44 - . . scaffold714 GLEAN mRNA 72326 94511 0.727136 + . ID=CGI_10016640; C30988 WUBlastX LINE_CR1-L2 5719 6528 206 + . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_RTE-X 18163 19041 288 - . . . . . -1 -1 -1 . . . C32240 WUBlastX LTR_DIRS 9416 10744 468 + . . . . . -1 -1 -1 . . . C32240 WUBlastX LTR_DIRS 10759 11064 79 + . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_Ngaro 78091 78486 63 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold41248 WUBlastX LINE_L1-Tx1 21338 21712 85 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_Maverick 121356 122087 199 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_Maverick 122149 122469 125 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_Maverick 122923 123060 50 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_Maverick 123059 124165 183 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX DNA_TcMar-Pogo 235563 236402 249 + . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_RTE-X 136954 137427 80 - . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX DNA_TcMar-Tc1 102794 103651 394 - . . scaffold1738 GLEAN mRNA 101617 114566 0.999676 + . ID=CGI_10008970; scaffold1578 WUBlastX LTR_Gypsy 125974 126066 22 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_TcMar-Tc1 773648 773929 139 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_TcMar-Tc1 773923 774363 255 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LTR_Gypsy 201854 203449 629 - . . . . . -1 -1 -1 . . . scaffold33638 WUBlastX DNA_Kolobok-IS4 5903 6967 496 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX DNA_Kolobok-IS4 46150 47214 502 - . . . . . -1 -1 -1 . . . C30072 WUBlastX LINE_RTE-X 5835 6002 87 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 526934 527578 178 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; C28108 WUBlastX DNA_TcMar-Pogo 3842 4144 224 - . . . . . -1 -1 -1 . . . C33646 WUBlastX LTR_DIRS 2914 4416 524 + . . . . . -1 -1 -1 . . . C33646 WUBlastX LTR_DIRS 4472 4579 30 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_TcMar-Tc1 445428 446177 278 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_TcMar-Tc1 446206 446427 163 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX DNA_Crypton 107576 108610 594 - . . scaffold489 GLEAN mRNA 93550 113740 0.603671 - . ID=CGI_10020228; scaffold834 WUBlastX LINE_RTE-X 66526 67296 175 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Gypsy 210299 210391 61 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 123896 124192 47 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 526940 527434 199 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold1750 WUBlastX LINE_RTE-X 18560 19204 282 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold348 WUBlastX LINE_L1-Tx1 132257 132823 46 + . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX LTR_Gypsy 8 355 279 + . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX LTR_Gypsy 342 455 60 + . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX LTR_Gypsy 439 930 326 + . . . . . -1 -1 -1 . . . scaffold35138 WUBlastX LTR_Gypsy 11261 11401 21 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LTR_Gypsy 325124 325357 37 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LTR_Gypsy 31925 32464 139 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX DNA_IS4EU 513637 514635 541 - . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold705 WUBlastX DNA_IS4EU 406672 406959 27 - . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold1785 WUBlastX DNA_Harbinger 907857 908663 586 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Maverick 400389 400565 30 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-X 344529 344909 72 + . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LTR_Ngaro 69705 69827 51 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 268858 269196 76 - . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LINE_L1-Tx1 192241 193365 251 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 124655 124930 181 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 124902 125810 429 - . . . . . -1 -1 -1 . . . scaffold38898 WUBlastX LTR_Ngaro 4329 4889 252 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Maverick 58110 58796 343 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Maverick 58802 59308 273 + . . . . . -1 -1 -1 . . . C24456 WUBlastX DNA_Zator 2 1183 553 + . . . . . -1 -1 -1 . . . C24456 WUBlastX DNA_Zator 1358 1750 96 + . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LINE_R2-Hero 328876 329568 143 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 539292 540614 618 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 707711 708175 306 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX DNA_Kolobok-IS4 404780 405907 551 - . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX DNA_Kolobok-IS4 406639 406899 46 - . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold368 WUBlastX LINE_Penelope 441704 442936 430 - . . . . . -1 -1 -1 . . . scaffold27958 WUBlastX LINE_L1 2297 2554 22 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LTR_Gypsy-Cigr 633035 634246 696 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 492784 493194 85 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LTR_Gypsy 49876 50805 659 + . . . . . -1 -1 -1 . . . scaffold34438 WUBlastX RC_Helitron 13333 13848 179 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 240116 240778 219 - . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LINE_L2 7206 8423 618 + . . scaffold40786 GLEAN mRNA 7257 8429 0.999999 + . ID=CGI_10004439; scaffold1132 WUBlastX LTR_Pao 754755 755150 60 - . . . . . -1 -1 -1 . . . scaffold42166 WUBlastX LINE_RTE-X 72688 73353 103 + . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy 66730 66807 36 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold223 WUBlastX LTR_Gypsy 5146 5745 540 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 5756 6631 169 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold1391 WUBlastX LINE_L1-Tx1 438058 439518 602 - . . . . . -1 -1 -1 . . . scaffold35598 WUBlastX LTR_Gypsy 7614 7964 157 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1 290068 290127 20 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 612899 613057 36 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 184480 185022 481 + . . . . . -1 -1 -1 . . . scaffold41896 WUBlastX LINE_L2 28103 28336 71 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_RTE-X 322023 322622 147 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_hAT-Blackja 255574 257256 621 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy 110209 110592 209 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 418617 418676 22 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 383462 384103 503 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_L1-Tx1 24116 25333 331 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_L1-Tx1 26311 26709 307 + . . . . . -1 -1 -1 . . . scaffold1745 WUBlastX LTR_Gypsy-Cigr 13614 14882 773 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Gypsy 654061 654273 21 + . . . . . -1 -1 -1 . . . scaffold527 WUBlastX DNA_hAT-hATw 358365 358499 24 - . . scaffold527 GLEAN mRNA 356733 368285 0.999351 + . ID=CGI_10015987; scaffold317 WUBlastX DNA_IS4EU 261235 262569 705 - . . . . . -1 -1 -1 . . . scaffold40442 WUBlastX LINE_L1 72621 75032 561 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_RTE-X 185444 186118 52 + . . . . . -1 -1 -1 . . . C29248 WUBlastX DNA_Zator 264 695 97 + . . . . . -1 -1 -1 . . . C29248 WUBlastX DNA_Zator 707 1567 464 + . . . . . -1 -1 -1 . . . C29248 WUBlastX DNA_Zator 1569 2066 124 + . . . . . -1 -1 -1 . . . C29248 WUBlastX DNA_Zator 2241 2633 88 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 497972 498784 471 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_P 408795 409760 332 - . . scaffold433 GLEAN mRNA 407360 429733 0.877924 + . ID=CGI_10027068; scaffold788 WUBlastX LINE_L1-Tx1 36156 36422 37 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_RTE-X 105583 105765 73 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold39014 WUBlastX LINE_L1-Tx1 28204 28446 25 - . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX LINE_L2 462405 462815 70 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Pao 17708 18934 299 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Pao 18932 19294 184 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX DNA_IS4EU 480001 480165 118 + . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 482321 482617 207 + . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold43538 WUBlastX LTR_Gypsy-Cigr 12117 13187 243 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold230 WUBlastX LINE_Penelope 209757 210194 162 + . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold301 WUBlastX LINE_L1-Tx1 909516 911342 532 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 161882 162748 21 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LINE_L2 387611 388951 715 + . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LINE_L1-Tx1 17018 17824 231 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1-Tx1 17883 18185 212 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1-Tx1 18439 19599 151 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold1896 WUBlastX LTR_Gypsy 104847 105464 104 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 442265 443617 831 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_RTE-X 130353 130460 48 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold1805 WUBlastX LTR_Gypsy 67465 67533 26 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LINE_CR1 148847 150385 328 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LTR_Pao 13231 13305 21 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Ngaro 46483 48054 841 - . . . . . -1 -1 -1 . . . C32536 WUBlastX LINE_RTE-X 2647 3195 179 - . . . . . -1 -1 -1 . . . C32536 WUBlastX LINE_RTE-X 3746 4375 390 - . . C32536 GLEAN mRNA 3574 9269 0.999661 - . ID=CGI_10000910; C32536 WUBlastX LINE_RTE-X 4363 4767 231 - . . C32536 GLEAN mRNA 3574 9269 0.999661 - . ID=CGI_10000910; scaffold43116 WUBlastX LTR_Pao 39755 39985 180 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 42233 42346 43 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 42328 42462 61 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 42742 43206 65 - . . . . . -1 -1 -1 . . . scaffold37468 WUBlastX LTR_Gypsy-Cigr 31625 33151 511 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_RTE-X 35728 36363 116 - . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_RTE-X 37322 38584 88 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1 57189 57761 316 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1 57758 58009 202 + . . . . . -1 -1 -1 . . . C32444 WUBlastX DNA_Sola 10035 11657 810 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy-Cigr 59829 60974 952 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 328373 329434 64 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LTR_Gypsy 45653 45925 25 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 497295 497621 211 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy-Cigr 264665 265783 271 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy 68253 68477 221 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold1825 WUBlastX LINE_L2 232250 232549 55 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_L2 670480 670866 33 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LINE_L2 166294 166491 36 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LINE_CR1-L2 296903 297091 70 - . . scaffold562 GLEAN mRNA 281521 297997 0.448852 + . ID=CGI_10016091; scaffold502 WUBlastX LINE_CR1-L2 483378 483506 29 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_CR1-L2 788990 789265 67 + . . scaffold392 GLEAN mRNA 784797 793663 0.791625 - . ID=CGI_10024236; scaffold1249 WUBlastX LINE_CR1-L2 529362 529535 45 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Copia 82974 83135 30 + . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Copia 64255 64506 36 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1295 WUBlastX LTR_Copia 3185 3346 30 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LTR_Copia 50196 50345 20 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy-Cigr 170037 170303 68 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold38026 WUBlastX LINE_Penelope 40115 40213 21 - . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LINE_Penelope 40161 40766 22 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX DNA_Chapaev 366445 366657 34 - . . scaffold557 GLEAN mRNA 364423 369316 0.975044 - . ID=CGI_10017977; scaffold329 WUBlastX LTR_ERV1 252567 252917 25 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Pao 101759 102361 55 - . . scaffold591 GLEAN mRNA 101702 102166 0.996819 - . ID=CGI_10027554; scaffold163 WUBlastX LTR_Pao 300578 301012 28 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Pao 1091543 1091689 68 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold40442 WUBlastX DNA_PiggyBac 88381 88455 34 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 614405 614668 45 - . . . . . -1 -1 -1 . . . scaffold1624 WUBlastX LTR_Gypsy 77143 77706 70 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LTR_Gypsy 333198 333254 45 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LTR_Gypsy 333434 333649 20 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold37944 WUBlastX LTR_Gypsy 45106 45663 45 - . . . . . -1 -1 -1 . . . scaffold693 WUBlastX LINE_RTE-BovB 10974 11165 37 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold926 WUBlastX LTR_Ngaro 2518 2649 79 + . . . . . -1 -1 -1 . . . scaffold478 WUBlastX LTR_Ngaro 18430 18531 57 - . . . . . -1 -1 -1 . . . scaffold1226 WUBlastX LTR_Ngaro 31922 32206 60 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_DIRS 1260426 1260611 60 - . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold288 WUBlastX LINE_CR1 36310 36402 29 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LTR_Gypsy 344684 345169 27 - . . scaffold378 GLEAN mRNA 344618 345241 0.999372 - . ID=CGI_10017652; scaffold670 WUBlastX LTR_Gypsy 76286 76579 74 + . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LTR_Gypsy 140955 141047 26 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold102 WUBlastX LTR_Gypsy 736095 736409 27 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LTR_Gypsy 558171 558389 42 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 166179 166463 24 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold266 WUBlastX DNA_Harbinger 264391 264639 54 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX DNA_Harbinger 82656 82928 23 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_Harbinger 262434 262511 50 + . . scaffold794 GLEAN mRNA 251355 264307 1 + . ID=CGI_10017152; scaffold794 WUBlastX DNA_Harbinger 263194 263304 37 + . . scaffold794 GLEAN mRNA 251355 264307 1 + . ID=CGI_10017152; scaffold85 WUBlastX LINE_R2-Hero 445931 446059 24 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX DNA_TcMar-Marin 73191 73343 35 - . . scaffold1449 GLEAN mRNA 67747 83098 0.84051 + . ID=CGI_10010691; scaffold1562 WUBlastX DNA_TcMar-Marin 105859 105957 65 - . . scaffold1562 GLEAN mRNA 73157 112953 0.997511 - . ID=CGI_10005776; scaffold1560 WUBlastX LINE_I 240711 241130 39 + . . scaffold1560 GLEAN mRNA 240834 241163 0.481188 + . ID=CGI_10009802; scaffold1214 WUBlastX LINE_I 243642 243695 23 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold442 WUBlastX DNA_IS4EU 48062 48241 36 + . . . . . -1 -1 -1 . . . scaffold13 WUBlastX DNA_hAT-Blackja 171969 172121 26 + . . scaffold13 GLEAN mRNA 172056 194004 0.998501 + . ID=CGI_10013207; scaffold13 WUBlastX DNA_hAT-Blackja 172275 172496 46 + . . scaffold13 GLEAN mRNA 172056 194004 0.998501 + . ID=CGI_10013207; scaffold352 WUBlastX DNA_Kolobok 235084 235296 44 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX DNA_Kolobok 235405 235467 24 - . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_Kolobok-Hyd 210601 211017 50 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold1806 WUBlastX LINE_L1 131684 131728 23 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 790258 790437 21 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 218096 218257 29 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold33412 WUBlastX LINE_L1 6520 6645 27 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_L1 99723 100412 37 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 186885 187184 30 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LINE_Penelope 345612 345767 52 - . . scaffold705 GLEAN mRNA 340127 351838 0.495675 + . ID=CGI_10015517; scaffold659 WUBlastX DNA_P 11285 11635 65 + . . scaffold659 GLEAN mRNA 29 26278 0.692942 + . ID=CGI_10014692; scaffold247 WUBlastX DNA_Merlin 434551 434760 61 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_MuDR 181815 182024 48 + . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX DNA_TcMar-Marin 313705 313866 22 + . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX DNA_TcMar-Marin 313898 314083 44 + . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX LTR_ERV1 66359 66406 28 - . . scaffold1454 GLEAN mRNA 63589 73088 0.838276 - . ID=CGI_10004314; scaffold814 WUBlastX LINE_RTE-X 37756 37893 60 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_RTE-X 288332 288427 27 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_RTE-X 26308 26448 21 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_RTE-X 337885 338025 21 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold257 WUBlastX LINE_RTE-X 319829 319942 73 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold914 WUBlastX LINE_RTE-X 572975 573190 40 - . . scaffold914 GLEAN mRNA 571342 573982 0.999997 + . ID=CGI_10018903; scaffold885 WUBlastX LINE_RTE-X 854198 854512 72 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 26003 26284 81 - . . . . . -1 -1 -1 . . . scaffold36278 WUBlastX DNA_PiggyBac 26785 26895 20 - . . scaffold36278 GLEAN mRNA 22300 32002 0.651135 - . ID=CGI_10001848; scaffold200 WUBlastX LINE_RTE-BovB 15084 15263 77 + . . scaffold200 GLEAN mRNA 11471 15537 0.697892 - . ID=CGI_10006218; scaffold980 WUBlastX LINE_RTE-X 279864 280169 52 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_RTE-X 574765 574986 57 + . . scaffold502 GLEAN mRNA 565112 575642 1 - . ID=CGI_10024335; scaffold502 WUBlastX LINE_RTE-X 574765 574986 57 + . . scaffold502 GLEAN mRNA 574231 594075 0.544521 + . ID=CGI_10024336; C27882 WUBlastX LINE_RTE-X 4934 5050 72 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-X 328185 328433 38 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-X 453175 453552 23 - . . scaffold203 GLEAN mRNA 431495 460852 0.461924 + . ID=CGI_10021073; scaffold1061 WUBlastX LINE_RTE-X 206920 207057 62 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1-Tx1 322496 322600 23 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_L1-Tx1 358665 358865 83 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold1373 WUBlastX DNA_TcMar-Tc1 131587 131838 47 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_TcMar-Marin 208144 208326 70 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LTR_Pao 57104 57511 80 + . . . . . -1 -1 -1 . . . C32150 WUBlastX LTR_Gypsy 2310 3014 21 + . . . . . -1 -1 -1 . . . C36038 WUBlastX LTR_Copia 16353 16583 22 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_CR1 677051 677101 21 - . . . . . -1 -1 -1 . . . scaffold1577 WUBlastX LINE_CR1 35972 36112 60 + . . . . . -1 -1 -1 . . . scaffold1726 WUBlastX LINE_CR1-L2 361912 362208 34 + . . . . . -1 -1 -1 . . . scaffold31222 WUBlastX LINE_CR1 2905 3270 73 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_L2 259596 260378 48 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_CR1 1351854 1352318 26 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_L2 884622 884828 51 - . . scaffold492 GLEAN mRNA 881318 888477 0.999998 + . ID=CGI_10024872; scaffold377 WUBlastX LINE_CR1 179749 179820 37 - . . . . . -1 -1 -1 . . . scaffold42990 WUBlastX LINE_CR1-L2 166992 167219 61 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L2 450511 451125 38 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold70 WUBlastX LINE_CR1 28301 28900 36 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX LINE_CR1 278302 278628 44 + . . . . . -1 -1 -1 . . . scaffold38354 WUBlastX LTR_Gypsy 3833 4141 67 + . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_CR1 29856 29981 48 + . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L2 205004 205183 71 + . . . . . -1 -1 -1 . . . scaffold1006 WUBlastX LTR_Gypsy 40086 40571 73 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Ngaro 366664 367353 64 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_ERVK 142886 142945 20 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Gypsy 50032 50451 70 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 932881 932943 42 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_I 352522 352698 26 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold1541 WUBlastX DNA_hAT-Tip100 471286 471387 27 + . . scaffold1541 GLEAN mRNA 469948 471973 0.864419 + . ID=CGI_10017901; scaffold38130 WUBlastX RC_Helitron 15961 16335 57 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX RC_Helitron 250873 251538 86 - . . scaffold524 GLEAN mRNA 241978 255594 0.734579 - . ID=CGI_10016606; C24440 WUBlastX DNA_Kolobok-IS4 454 1035 69 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Kolobok-IS4 1079350 1079658 82 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_I 317339 317638 62 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_IS4EU 170099 170848 71 + . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LTR_Gypsy 166578 167237 57 + . . . . . -1 -1 -1 . . . scaffold1876 WUBlastX LTR_Gypsy 100200 100364 97 - . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LTR_Gypsy 15978 16058 26 + . . . . . -1 -1 -1 . . . C23786 WUBlastX LINE_CR1 1407 1988 31 - . . . . . -1 -1 -1 . . . scaffold41762 WUBlastX DNA_TcMar-Tc1 19658 19906 55 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_TcMar-Tc2 314001 314126 34 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_Penelope 51952 52143 32 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_Penelope 56078 56341 47 - . . scaffold504 GLEAN mRNA 50895 74674 0.999922 - . ID=CGI_10016016; scaffold1860 WUBlastX LINE_L1-Tx1 244546 244812 48 + . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L1-Tx1 93932 94009 20 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1 322627 322932 29 + . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_L1 399868 400470 56 - . . . . . -1 -1 -1 . . . scaffold33502 WUBlastX LINE_Penelope 11978 12433 23 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_Penelope 41765 42295 20 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-X 953484 953651 64 - . . . . . -1 -1 -1 . . . scaffold416 WUBlastX LINE_RTE-X 160529 160708 76 - . . scaffold416 GLEAN mRNA 138143 163837 0.657495 + . ID=CGI_10014740; scaffold329 WUBlastX LINE_RTE-X 131434 131586 85 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_RTE-X 188248 188574 40 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold43344 WUBlastX LINE_RTE-X 183409 183597 31 - . . . . . -1 -1 -1 . . . scaffold43344 WUBlastX LINE_RTE-X 183576 183722 34 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Maverick 1365540 1365674 54 - . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX LINE_RTE-X 75479 75772 57 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 81994 82086 42 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold784 WUBlastX LINE_RTE-X 453708 453923 58 + . . scaffold784 GLEAN mRNA 448281 458100 0.401004 + . ID=CGI_10024430; scaffold1704 WUBlastX LINE_RTE-X 127087 127422 60 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LINE_RTE-X 241245 241397 71 + . . . . . -1 -1 -1 . . . scaffold923 WUBlastX LINE_RTE-X 38172 38366 53 + . . . . . -1 -1 -1 . . . scaffold1585 WUBlastX LINE_RTE-X 7384 7599 71 + . . scaffold1585 GLEAN mRNA 1530 11079 0.999999 - . ID=CGI_10012582; scaffold186 WUBlastX LINE_RTE-X 274975 275151 49 - . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX DNA_Sola 7444 7536 20 + . . scaffold1810 GLEAN mRNA 7368 11444 0.979898 + . ID=CGI_10007553; scaffold471 WUBlastX DNA_TcMar-Tc1 743697 743804 21 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Sola 578568 578930 74 + . . scaffold86 GLEAN mRNA 577054 579340 0.999999 + . ID=CGI_10028160; C32106 WUBlastX DNA_Sola 1924 2031 68 - . . . . . -1 -1 -1 . . . C32106 WUBlastX DNA_Sola 2136 2204 32 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 9602 10393 45 - . . . . . -1 -1 -1 . . . scaffold36642 WUBlastX DNA_TcMar-Tc1 30346 30708 68 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Tc1 876836 876889 23 - . . . . . -1 -1 -1 . . . scaffold42556 WUBlastX LINE_L2 32110 32295 30 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L2 481219 481476 47 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_L2 181943 182104 85 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_L2 183004 183165 30 - . . . . . -1 -1 -1 . . . C35042 WUBlastX LINE_CR1-L2 13731 13823 63 - . . C35042 GLEAN mRNA 1730 15534 0.391528 + . ID=CGI_10001403; scaffold448 WUBlastX LINE_CR1 66921 67007 20 + . . scaffold448 GLEAN mRNA 53576 85492 0.998765 + . ID=CGI_10024929; scaffold1448 WUBlastX LINE_CR1-L2 274312 274470 30 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_CR1-L2 163187 163348 104 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_CR1-L2 1040381 1040659 59 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LINE_CR1-L2 131857 132123 88 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LTR_DIRS 50655 51182 82 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 32667 32780 29 - . . . . . -1 -1 -1 . . . scaffold37794 WUBlastX DNA_hAT-Tip100 34743 35135 83 - . . scaffold37794 GLEAN mRNA 31174 37793 0.544852 + . ID=CGI_10002501; scaffold750 WUBlastX DNA_hAT-Ac 596560 596721 86 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_hAT-Tag1 591155 591499 79 + . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LTR_Gypsy 158130 158303 82 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 153714 153866 24 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 38338 38520 50 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold82 WUBlastX LINE_RTE-BovB 688852 688929 20 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold32 WUBlastX LINE_RTE 132316 132456 35 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_L2 6970 7461 64 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 3344 3604 115 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 478117 478377 115 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 38830 39048 54 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 107102 107518 72 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Gypsy 213971 214153 21 - . . scaffold1255 GLEAN mRNA 214109 222745 0.998357 - . ID=CGI_10018069; scaffold930 WUBlastX DNA_Harbinger 251716 251895 22 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_Harbinger 37211 37321 26 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_Harbinger 37826 37951 55 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Harbinger 598645 598767 98 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold1077 WUBlastX DNA_Harbinger 508304 508402 34 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_I 269034 269225 102 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_Kolobok-IS4 539583 540164 73 + . . scaffold1101 GLEAN mRNA 537182 541543 0.997138 + . ID=CGI_10023032; scaffold919 WUBlastX DNA_Harbinger 44905 45039 53 - . . . . . -1 -1 -1 . . . scaffold919 WUBlastX DNA_Harbinger 45154 45225 28 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX DNA_hAT-Ac 149431 149682 103 - . . . . . -1 -1 -1 . . . scaffold41762 WUBlastX DNA_Kolobok 73136 73372 112 + . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LINE_Penelope 91073 91150 44 - . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LINE_Penelope 91712 91864 39 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1 469515 469586 28 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; C28632 WUBlastX LINE_L1 3405 4097 58 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_IS4EU 246431 246634 67 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 235000 235158 50 + . . . . . -1 -1 -1 . . . scaffold180 WUBlastX LINE_Penelope 56433 56477 24 - . . . . . -1 -1 -1 . . . scaffold1608 WUBlastX DNA_MuDR 72903 73385 23 + . . . . . -1 -1 -1 . . . scaffold849 WUBlastX LINE_Penelope 9198 9389 69 + . . . . . -1 -1 -1 . . . C31062 WUBlastX DNA_TcMar-Tc2 4186 4545 93 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_TcMar-Tc2 65810 66055 109 + . . . . . -1 -1 -1 . . . C33378 WUBlastX DNA_TcMar-Fot1 3465 3740 33 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_RTE-X 173162 173272 44 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_RTE-X 188 442 44 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 1091631 1091813 87 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_PiggyBac 419603 419665 24 - . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX DNA_Maverick 17339 17662 92 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX DNA_Maverick 102793 103242 107 - . . . . . -1 -1 -1 . . . C31304 WUBlastX LINE_RTE-BovB 8 244 87 + . . . . . -1 -1 -1 . . . scaffold1721 WUBlastX LINE_RTE-BovB 14816 15079 65 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 730009 730284 51 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-X 23281 23583 80 + . . scaffold1423 GLEAN mRNA 13450 32441 0.999998 - . ID=CGI_10025403; scaffold1714 WUBlastX DNA_Sola 207578 208006 95 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX DNA_TcMar-Tc2 87506 87871 86 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Sola 256457 256642 65 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Gypsy 52838 53119 94 - . . scaffold1673 GLEAN mRNA 51832 54257 0.720264 - . ID=CGI_10013570; scaffold100 WUBlastX LTR_Ngaro 933762 934007 84 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LTR_DIRS 190827 191291 75 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX DNA_TcMar-Tc1 350868 351098 92 - . . scaffold950 GLEAN mRNA 320484 362683 0.981503 - . ID=CGI_10022928; scaffold126 WUBlastX LTR_Gypsy-Cigr 474826 475014 64 + . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX LINE_L1-Tx1 124304 124624 57 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1 42372 42464 47 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 258676 259491 48 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold40556 WUBlastX LTR_Copia 84491 84622 28 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Pao 777204 777527 26 - . . scaffold760 GLEAN mRNA 769034 781440 0.699516 - . ID=CGI_10024010; scaffold31382 WUBlastX LTR_Pao 6181 6306 110 + . . scaffold31382 GLEAN mRNA 6169 6891 0.573096 - . ID=CGI_10000732; scaffold275 WUBlastX LINE_L2 114986 115036 27 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_CR1 53753 53992 93 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold712 WUBlastX LINE_CR1-L2 436833 437345 81 + . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold363 WUBlastX LINE_CR1-L2 360193 360468 65 + . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_CR1 300074 300472 48 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_CR1 357284 357367 22 + . . . . . -1 -1 -1 . . . scaffold1341 WUBlastX LINE_L2 22346 22552 100 - . . scaffold1341 GLEAN mRNA 4451 30218 0.992186 + . ID=CGI_10004662; scaffold619 WUBlastX LTR_Ngaro 483292 483714 69 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold599 WUBlastX LTR_ERV-Foamy 354713 355450 50 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX DNA_En-Spm 91477 92499 44 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LTR_Gypsy 411100 412068 55 + . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 132591 132791 72 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LTR_Gypsy-Cigr 21728 21850 24 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX LTR_Gypsy-Cigr 21927 22226 94 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold39096 WUBlastX LTR_Gypsy 21905 22762 64 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; C31978 WUBlastX LTR_Gypsy-Cigr 532 669 43 + . . . . . -1 -1 -1 . . . scaffold1418 WUBlastX DNA_Kolobok-IS4 14005 14370 39 + . . scaffold1418 GLEAN mRNA 13969 14844 0.999965 + . ID=CGI_10001498; scaffold1418 WUBlastX DNA_Kolobok-IS4 14704 14841 78 + . . scaffold1418 GLEAN mRNA 13969 14844 0.999965 + . ID=CGI_10001498; C29538 WUBlastX DNA_IS4EU 607 1179 62 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX DNA_IS4EU 484446 484655 26 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold1459 WUBlastX DNA_IS4EU 184378 184584 83 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Harbinger 223438 223584 44 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX DNA_Harbinger 175138 175284 44 + . . scaffold895 GLEAN mRNA 174153 176700 0.999921 + . ID=CGI_10011335; scaffold43242 WUBlastX DNA_Harbinger 18512 18607 43 - . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX DNA_Harbinger 148834 149031 70 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_Harbinger 482503 482679 87 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LINE_L1 3193 3918 52 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LTR_Gypsy 272617 273309 87 + . . scaffold386 GLEAN mRNA 254590 284645 0.652172 - . ID=CGI_10012692; scaffold1788 WUBlastX DNA_TcMar-Fot1 324519 324779 51 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_TcMar-Pogo 212350 212529 97 + . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX LINE_Penelope 38440 39042 42 + . . . . . -1 -1 -1 . . . scaffold38828 WUBlastX LTR_ERV1 33023 33556 62 + . . scaffold38828 GLEAN mRNA 31835 37853 0.998504 + . ID=CGI_10003000; scaffold643 WUBlastX DNA_NOF 25208 25597 49 - . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_L1 4743 4859 22 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold1813 WUBlastX LINE_L1 30369 30515 20 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1 143913 144134 39 + . . . . . -1 -1 -1 . . . scaffold1042 WUBlastX LINE_RTE-BovB 44 253 78 - . . . . . -1 -1 -1 . . . scaffold1042 WUBlastX LINE_RTE-BovB 265 384 49 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 67986 68279 50 - . . scaffold1132 GLEAN mRNA 47693 94911 0.303068 - . ID=CGI_10023311; scaffold1307 WUBlastX LINE_RTE-X 18320 18478 23 - . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold370 WUBlastX LINE_RTE-X 188182 188448 40 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold1328 WUBlastX DNA_Maverick 33962 34114 45 - . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Maverick 4042 4428 41 - . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX DNA_PiggyBac 77044 77340 89 - . . . . . -1 -1 -1 . . . scaffold41988 WUBlastX DNA_PiggyBac 96260 96553 66 + . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-X 46513 46689 25 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 650880 651218 49 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_RTE-X 725812 725994 106 - . . scaffold53 GLEAN mRNA 717033 733892 1 - . ID=CGI_10026682; scaffold1527 WUBlastX LINE_RTE-X 176173 176262 39 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 1194801 1195121 31 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_RTE-X 432760 433065 67 + . . scaffold492 GLEAN mRNA 430618 435399 1 - . ID=CGI_10024835; scaffold1307 WUBlastX LTR_Gypsy 341712 342266 54 + . . . . . -1 -1 -1 . . . scaffold35928 WUBlastX LTR_Ngaro 19747 20043 98 - . . . . . -1 -1 -1 . . . scaffold1721 WUBlastX LINE_RTE-X 32773 32832 41 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX DNA_Sola 415381 415590 63 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_L1-Tx1 710946 711272 78 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 821475 821819 44 - . . scaffold204 GLEAN mRNA 815967 826283 0.552692 + . ID=CGI_10026134; scaffold678 WUBlastX LINE_L1-Tx1 611547 611798 56 - . . . . . -1 -1 -1 . . . scaffold399 WUBlastX LINE_L1-Tx1 201177 201491 50 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_L1-Tx1 21254 21703 66 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_L2 6874 7107 95 + . . scaffold286 GLEAN mRNA 4248 12636 0.682866 - . ID=CGI_10015954; scaffold1358 WUBlastX LINE_CR1 255158 255223 24 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_CR1-L2 114695 114835 31 + . . . . . -1 -1 -1 . . . scaffold686 WUBlastX LINE_CR1-L2 2584 2964 93 - . . scaffold686 GLEAN mRNA 377 5602 0.998023 - . ID=CGI_10004460; scaffold1599 WUBlastX LINE_CR1-L2 742835 743032 22 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Pao 204581 204769 36 - . . . . . -1 -1 -1 . . . scaffold39412 WUBlastX LINE_Jockey 24068 24568 61 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Copia 487601 487693 24 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold1894 WUBlastX LTR_Gypsy-Cigr 205983 206138 58 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 206131 206499 75 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX DNA_Academ 489203 489376 62 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_PiggyBac 36711 37067 105 - . . . . . -1 -1 -1 . . . scaffold35358 WUBlastX LTR_Pao 3282 3608 105 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-BovB 288771 289052 91 - . . scaffold544 GLEAN mRNA 248926 297755 0.519606 - . ID=CGI_10022553; scaffold286 WUBlastX LTR_Gypsy 290965 290994 20 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LINE_L2 9631 10377 87 - . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LTR_Gypsy 68042 68266 132 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 234130 234279 24 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Harbinger 241433 241741 78 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_IS4EU 9544 9717 96 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_ERV1 232362 232442 23 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_IS4EU 434470 434619 84 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX DNA_Harbinger 495331 495459 34 + . . . . . -1 -1 -1 . . . scaffold487 WUBlastX DNA_Kolobok 441902 442141 95 + . . scaffold487 GLEAN mRNA 439996 447135 0.39713 - . ID=CGI_10017054; scaffold483 WUBlastX DNA_Kolobok 13164 13421 97 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LTR_Gypsy 42980 43348 105 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 136782 136919 39 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1 17612 17683 42 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1 60980 61789 44 - . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1 182359 182487 26 - . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX DNA_MuDR 15722 16036 39 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold541 WUBlastX LINE_Penelope 369427 369987 56 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_Penelope 446881 446955 25 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_Penelope 446940 447308 66 + . . . . . -1 -1 -1 . . . scaffold39536 WUBlastX LINE_Penelope 20908 21228 82 - . . . . . -1 -1 -1 . . . scaffold470 WUBlastX LTR_Gypsy 1167 1280 20 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_TcMar-Marin 655994 656161 52 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 656884 657039 64 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1272 WUBlastX LINE_L1 113694 114176 68 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LINE_L2 122139 122546 101 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 538640 538969 104 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_RTE-X 415841 415930 21 - . . scaffold594 GLEAN mRNA 414845 416168 0.999391 - . ID=CGI_10016391; scaffold531 WUBlastX LINE_RTE-X 146967 147194 85 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-X 36496 36798 27 - . . scaffold546 GLEAN mRNA 24963 48088 0.999351 + . ID=CGI_10020990; scaffold337 WUBlastX LINE_RTE-X 1504994 1505503 73 - . . . . . -1 -1 -1 . . . scaffold1371 WUBlastX LINE_RTE-X 57827 58219 101 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 283602 283823 107 - . . . . . -1 -1 -1 . . . scaffold912 WUBlastX LINE_R2 53008 53115 23 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_TcMar-Tc1 229897 230046 65 - . . scaffold816 GLEAN mRNA 223398 238743 0.358147 + . ID=CGI_10015655; scaffold122 WUBlastX LINE_RTE-BovB 47533 47703 46 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX DNA_Sola 208365 208850 33 - . . scaffold1740 GLEAN mRNA 208281 211238 0.866192 - . ID=CGI_10011449; scaffold1740 WUBlastX DNA_Sola 209023 209190 74 - . . scaffold1740 GLEAN mRNA 208281 211238 0.866192 - . ID=CGI_10011449; scaffold1651 WUBlastX DNA_TcMar-Tc1 65256 65534 79 - . . scaffold1651 GLEAN mRNA 64291 72997 0.999027 + . ID=CGI_10007888; scaffold38510 WUBlastX DNA_Sola 24590 24946 43 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold41700 WUBlastX LTR_Gypsy 63979 64068 22 + . . scaffold41700 GLEAN mRNA 62822 64018 0.99493 + . ID=CGI_10005503; scaffold1447 WUBlastX DNA_TcMar-Tc1 153109 153432 93 - . . scaffold1447 GLEAN mRNA 145066 154561 0.838589 - . ID=CGI_10013818; scaffold894 WUBlastX LINE_L1-Tx1 181413 181877 35 + . . scaffold894 GLEAN mRNA 171936 185580 0.999624 + . ID=CGI_10008548; scaffold1822 WUBlastX LINE_L1-Tx1 61542 61658 20 - . . . . . -1 -1 -1 . . . scaffold1822 WUBlastX LINE_L1-Tx1 62258 62626 25 - . . . . . -1 -1 -1 . . . scaffold1426 WUBlastX DNA_hAT-Charlie 6647 6973 86 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold413 WUBlastX LTR_Gypsy 554487 555197 84 + . . scaffold413 GLEAN mRNA 553173 557512 0.824889 + . ID=CGI_10022810; scaffold756 WUBlastX LTR_ERV1 245225 245596 74 - . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LINE_CR1-L2 88290 88793 80 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_CR1 125480 126046 61 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_CR1 139281 139952 91 + . . scaffold43500 GLEAN mRNA 139719 139958 0.7334 + . ID=CGI_10010618; scaffold794 WUBlastX LINE_L2 444967 445278 60 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX LINE_CR1-L2 145857 146375 48 + . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_L2 58880 58981 46 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L2 448573 448845 112 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Ngaro 89375 89536 28 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold786 WUBlastX LTR_Ngaro 200701 201018 126 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LTR_DIRS 376292 376330 26 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_DIRS 630640 631002 60 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_DIRS 118621 118866 70 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_DIRS 118824 119570 31 + . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LTR_Gypsy 202671 202766 44 + . . scaffold43696 GLEAN mRNA 200896 208237 0.287333 + . ID=CGI_10011805; scaffold1123 WUBlastX LTR_Gypsy 431472 432032 76 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 132019 132285 126 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 5665 6303 69 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 117197 117238 27 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_Kolobok 6841 6975 39 - . . . . . -1 -1 -1 . . . scaffold930 WUBlastX DNA_hAT-hATw 202726 203166 22 + . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX RC_Helitron 402196 402756 93 + . . . . . -1 -1 -1 . . . scaffold35 WUBlastX DNA_IS4EU 1527 1796 118 - . . . . . -1 -1 -1 . . . scaffold1233 WUBlastX DNA_IS4EU 13343 13570 120 - . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold41664 WUBlastX DNA_IS4EU 38370 38816 60 + . . scaffold41664 GLEAN mRNA 32940 39733 0.880346 + . ID=CGI_10005414; scaffold1609 WUBlastX DNA_IS4EU 19199 19672 77 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Harbinger 283562 283834 45 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold152 WUBlastX LTR_Gypsy 178935 179384 118 - . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 11775 11933 139 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Ngaro 453298 453549 127 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 472131 472355 86 - . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_Penelope 117975 118349 101 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_MuDR 428990 429241 50 + . . . . . -1 -1 -1 . . . scaffold38780 WUBlastX DNA_Merlin 2838 3248 101 + . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold983 WUBlastX LINE_L1 363472 364290 31 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_RTE-X 609172 609345 43 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_RTE-X 609688 609858 61 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_RTE-BovB 233341 233535 58 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_RTE-BovB 233538 233930 78 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 7292 7690 73 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_PiggyBac 632424 632534 36 - . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LTR_DIRS 70265 70492 77 + . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LTR_DIRS 71334 71498 34 + . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_TcMar-Pogo 28613 28945 104 - . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LINE_L1-Tx1 330824 331132 98 - . . . . . -1 -1 -1 . . . scaffold1251 WUBlastX LINE_L1-Tx1 58569 58943 60 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1-Tx1 316976 317296 77 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold1318 WUBlastX DNA_TcMar-Tc1 48151 48738 81 + . . scaffold1318 GLEAN mRNA 47679 59079 0.328272 + . ID=CGI_10008644; scaffold1171 WUBlastX LINE_L1-Tx1 36586 37026 80 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_CR1 243946 244101 75 + . . . . . -1 -1 -1 . . . scaffold675 WUBlastX LINE_CR1 67941 68027 36 - . . . . . -1 -1 -1 . . . scaffold37358 WUBlastX LINE_CR1 35696 36079 101 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_CR1 160437 160850 61 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold1891 WUBlastX LTR_Copia 165379 165429 21 - . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX DNA_Academ 324156 324431 124 + . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX DNA_Academ 324455 324532 34 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Pao 352443 352862 130 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold315 WUBlastX LTR_Pao 204209 204892 47 - . . scaffold315 GLEAN mRNA 198637 213809 0.999922 + . ID=CGI_10020410; scaffold12 WUBlastX LTR_Gypsy 351109 351246 29 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold707 WUBlastX LTR_Gypsy 148260 148394 39 + . . scaffold707 GLEAN mRNA 147246 152183 0.998094 + . ID=CGI_10007725; scaffold248 WUBlastX LTR_Gypsy 113375 113458 20 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Ngaro 304648 304815 36 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Ngaro 62274 62399 26 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 95333 95608 47 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; C26430 WUBlastX LTR_Gypsy 994 1239 112 + . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_Gypsy 49914 50147 119 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold1769 WUBlastX LTR_Gypsy 192185 192355 128 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 289103 289162 23 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 43403 43480 50 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_Harbinger 445226 445285 38 - . . scaffold933 GLEAN mRNA 438762 447503 0.391135 + . ID=CGI_10016727; scaffold933 WUBlastX DNA_Harbinger 445285 445491 97 - . . scaffold933 GLEAN mRNA 438762 447503 0.391135 + . ID=CGI_10016727; scaffold34308 WUBlastX DNA_IS4EU 15872 16045 39 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Kolobok 174913 175074 65 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_Kolobok 111869 112573 97 - . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1 26184 26267 27 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_L1 209517 209588 22 - . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX LINE_L1-Tx1 113418 113525 22 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold831 WUBlastX LINE_L1 254003 254113 25 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_Penelope 673400 673591 32 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 65913 66404 72 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold616 WUBlastX DNA_PiggyBac 403032 403283 93 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Maverick 358725 359000 49 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX DNA_Maverick 89243 89926 52 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Maverick 543313 543492 44 + . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-BovB 219895 220233 79 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 400532 400816 105 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_RTE-X 604884 605552 34 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_RTE-X 55303 55494 78 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc1 287108 287419 81 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_RTE-X 97162 97674 70 - . . scaffold43794 GLEAN mRNA 82340 100661 0.914367 - . ID=CGI_10012417; scaffold962 WUBlastX LINE_RTE-X 975188 975367 102 + . . scaffold962 GLEAN mRNA 965990 978537 0.921741 - . ID=CGI_10027674; scaffold22 WUBlastX LINE_RTE-X 242683 243009 112 - . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX DNA_TcMar-Tc1 61269 62120 78 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_TcMar-Tc1 435123 435191 38 - . . scaffold286 GLEAN mRNA 423114 437338 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 435123 435191 38 - . . scaffold286 GLEAN mRNA 433158 447481 0.525246 + . ID=CGI_10015974; scaffold1024 WUBlastX LINE_L1-Tx1 1010887 1011273 105 - . . . . . -1 -1 -1 . . . scaffold40832 WUBlastX LINE_L1-Tx1 82561 82635 23 - . . scaffold40832 GLEAN mRNA 51373 82869 0.350561 + . ID=CGI_10004457; C26626 WUBlastX LTR_Pao 2554 3435 104 - . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_DIRS 17343 17522 54 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LINE_Penelope 57722 58024 128 - . . . . . -1 -1 -1 . . . scaffold38438 WUBlastX LTR_Pao 8725 8979 20 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L2 549221 549673 119 - . . . . . -1 -1 -1 . . . scaffold34882 WUBlastX LINE_CR1-L2 1279 1506 100 + . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_L2 45063 45380 111 + . . scaffold754 GLEAN mRNA 34463 47005 0.401358 + . ID=CGI_10014062; scaffold560 WUBlastX LINE_L2 120226 120543 100 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_L2 179626 179937 29 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX DNA_En-Spm 65059 66105 74 - . . . . . -1 -1 -1 . . . scaffold43134 WUBlastX LTR_DIRS 193696 194352 30 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_Crypton 60779 61303 95 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LTR_Gypsy 312198 313244 102 - . . . . . -1 -1 -1 . . . scaffold40828 WUBlastX LTR_Gypsy 57493 57660 91 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold40104 WUBlastX LTR_Gypsy 70814 71536 128 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_IS4EU 67403 68029 63 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold634 WUBlastX DNA_TcMar-Marin 8581 8919 42 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX DNA_Harbinger 164537 164839 28 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_Penelope 89884 90171 43 - . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LINE_L1 115423 115497 27 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 543332 543436 71 - . . . . . -1 -1 -1 . . . C28286 WUBlastX DNA_TcMar-Marin 2331 2423 26 - . . . . . -1 -1 -1 . . . scaffold31090 WUBlastX DNA_TcMar-Fot1 7202 7327 32 + . . . . . -1 -1 -1 . . . scaffold38908 WUBlastX LINE_L1-Tx1 50464 50676 89 - . . . . . -1 -1 -1 . . . scaffold258 WUBlastX LINE_RTE-X 280160 280543 134 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 106863 106979 36 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-BovB 331255 331491 37 - . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold1857 WUBlastX DNA_Sola 3675 4025 122 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX DNA_Sola 15493 15843 122 + . . scaffold1869 GLEAN mRNA 8009 37015 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15493 15843 122 + . . scaffold1869 GLEAN mRNA 11164 16956 0.999984 + . ID=CGI_10009012; scaffold219 WUBlastX LTR_DIRS 122523 122720 62 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1-Tx1 736504 736632 37 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_R1 105318 105395 25 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Pao 157469 157984 118 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 39147 39236 26 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX LTR_Ngaro 21030 21809 59 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 227567 227854 41 - . . . . . -1 -1 -1 . . . scaffold1725 WUBlastX LTR_Gypsy 9548 9943 68 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX DNA_IS4EU 272658 272858 74 + . . scaffold510 GLEAN mRNA 271151 273234 0.650871 + . ID=CGI_10013771; scaffold386 WUBlastX DNA_Kolobok-IS4 211376 211888 76 + . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold552 WUBlastX DNA_hAT-hATw 145412 146023 88 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_L1-Tx1 433104 434708 52 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 189578 189784 55 - . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX LINE_L1 78636 79007 139 - . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX LINE_L1-Tx1 111710 112285 127 - . . scaffold43280 GLEAN mRNA 92021 113272 0.543593 + . ID=CGI_10009655; scaffold335 WUBlastX LINE_L1-Tx1 383982 384590 75 - . . scaffold335 GLEAN mRNA 381520 394130 0.458743 - . ID=CGI_10017105; scaffold968 WUBlastX LINE_L1 144971 145156 71 + . . . . . -1 -1 -1 . . . scaffold1639 WUBlastX DNA_Kolobok-Hyd 73342 73872 83 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L1-Tx1 42057 42506 124 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold175 WUBlastX LINE_L1-Tx1 299413 299781 128 - . . . . . -1 -1 -1 . . . scaffold39744 WUBlastX LINE_L1-Tx1 30219 30587 126 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_TcMar-Tc1 194183 194551 55 + . . scaffold184 GLEAN mRNA 186538 196154 0.912721 - . ID=CGI_10014797; scaffold43676 WUBlastX DNA_TcMar-Tc1 218732 219046 53 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_L1 26245 26655 129 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_L2 408279 408653 82 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_L2 409387 409791 23 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_P 562335 562526 37 - . . . . . -1 -1 -1 . . . C24596 WUBlastX LINE_Penelope 306 602 96 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_Penelope 164812 165516 116 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold873 WUBlastX DNA_Maverick 175646 176086 72 + . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-BovB 220214 220327 48 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-X 797746 797946 22 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold175 WUBlastX LINE_RTE-X 526554 526718 90 - . . . . . -1 -1 -1 . . . scaffold42128 WUBlastX DNA_TcMar-Tc1 12784 12948 53 + . . scaffold42128 GLEAN mRNA 1970 15266 0.99078 + . ID=CGI_10006194; scaffold578 WUBlastX DNA_TcMar-Tc1 340163 340585 111 + . . scaffold578 GLEAN mRNA 339528 348737 0.999218 - . ID=CGI_10015129; scaffold38674 WUBlastX LINE_L1-Tx1 49538 50011 70 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_L1-Tx1 348224 348709 63 - . . . . . -1 -1 -1 . . . scaffold387 WUBlastX LINE_L2 78459 78821 109 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_L2 483846 483944 22 - . . . . . -1 -1 -1 . . . scaffold39470 WUBlastX LTR_Ngaro 23043 24047 24 - . . scaffold39470 GLEAN mRNA 18519 32880 0.998788 - . ID=CGI_10003379; scaffold3 WUBlastX LINE_Jockey 944427 944774 77 + . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_hAT-Ac 104733 105026 52 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_hAT-Tip100 33921 34070 28 - . . . . . -1 -1 -1 . . . scaffold999 WUBlastX DNA_IS4EU 165827 166144 97 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX DNA_Harbinger 372276 372554 40 + . . scaffold1863 GLEAN mRNA 370491 381418 0.892726 + . ID=CGI_10016696; scaffold227 WUBlastX LINE_Penelope 305506 305655 26 + . . . . . -1 -1 -1 . . . scaffold935 WUBlastX LINE_RTE-BovB 79988 80374 138 + . . . . . -1 -1 -1 . . . C33658 WUBlastX LINE_L1 3383 3496 29 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LTR_Ngaro 23509 23715 37 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LINE_L1-Tx1 658104 658403 93 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LINE_L1-Tx1 658426 658566 33 + . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_RTE-X 300221 300652 138 + . . . . . -1 -1 -1 . . . scaffold38908 WUBlastX LINE_RTE-X 61713 62471 59 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-X 229300 229596 105 - . . scaffold853 GLEAN mRNA 228240 239310 0.61441 + . ID=CGI_10017498; scaffold39900 WUBlastX DNA_Maverick 63104 63421 108 + . . . . . -1 -1 -1 . . . scaffold40950 WUBlastX LINE_RTE-X 93313 93648 121 - . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX LTR_Ngaro 32260 32370 20 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold1149 WUBlastX LTR_Ngaro 126480 126605 58 + . . scaffold1149 GLEAN mRNA 123566 144809 0.531581 + . ID=CGI_10023452; scaffold1149 WUBlastX LTR_Ngaro 126626 126865 78 + . . scaffold1149 GLEAN mRNA 123566 144809 0.531581 + . ID=CGI_10023452; scaffold625 WUBlastX DNA_Sola 519234 519797 45 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Sola 803577 804788 67 + . . scaffold169 GLEAN mRNA 802679 805184 0.636202 + . ID=CGI_10022966; scaffold500 WUBlastX LINE_RTE-X 65727 66266 63 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_TcMar-Tc1 155 280 29 - . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy-Cigr 117094 117414 71 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 234320 235012 297 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_CR1-L2 420834 422573 808 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_DIRS 151982 153964 782 - . . scaffold621 GLEAN mRNA 127381 238205 0.796035 + . ID=CGI_10017672; scaffold43026 WUBlastX LINE_L1 131455 131832 105 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_RTE-BovB 198033 198929 566 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_RTE-BovB 198854 199216 425 - . . . . . -1 -1 -1 . . . scaffold1357 WUBlastX LTR_Gypsy 4991 5563 60 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Ngaro 601091 602518 831 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold266 WUBlastX LINE_RTE-X 189581 190447 433 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_RTE-X 190410 191237 295 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_RTE-X 37990 40161 786 - . . . . . -1 -1 -1 . . . scaffold814 WUBlastX LTR_Ngaro 86488 87855 949 - . . scaffold814 GLEAN mRNA 83997 88485 0.997298 + . ID=CGI_10008194; scaffold1889 WUBlastX LTR_Gypsy 34409 34510 21 + . . . . . -1 -1 -1 . . . scaffold265 WUBlastX LTR_Ngaro 68521 69009 321 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold408 WUBlastX LTR_Pao 254445 255410 254 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX RC_Helitron 39193 40446 267 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX DNA_TcMar-Tc2 82412 83734 1035 - . . scaffold67 GLEAN mRNA 72770 90591 0.702383 - . ID=CGI_10018264; scaffold41318 WUBlastX LTR_Ngaro 31525 32598 672 - . . . . . -1 -1 -1 . . . scaffold1039 WUBlastX LINE_CR1 10155 10538 284 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_Maverick 342987 343208 110 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LINE_CR1-L2 346795 347412 70 + . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX LINE_L2 39875 40285 24 - . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX LINE_L2 40273 40578 99 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L2 1352318 1352590 55 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 892355 892762 102 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_CR1 185246 185899 91 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Pao 161608 161994 167 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_hAT-Tip100 213254 214165 55 + . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 1432 1548 45 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Pao 300565 300750 35 + . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_L2 188246 188380 61 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold100 WUBlastX LTR_DIRS 768131 768670 126 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 1009147 1009617 103 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Ngaro 280583 281212 73 - . . scaffold610 GLEAN mRNA 278888 282376 0.9996 + . ID=CGI_10021107; scaffold39974 WUBlastX LTR_Ngaro 69202 69807 106 + . . scaffold39974 GLEAN mRNA 67732 80297 0.969362 + . ID=CGI_10003760; scaffold313 WUBlastX LTR_Ngaro 638690 638953 112 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_L2 115162 116094 27 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX RC_Helitron 43160 44362 20 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold1203 WUBlastX LINE_R2-Hero 97426 97500 53 + . . scaffold1203 GLEAN mRNA 96599 98385 0.992512 + . ID=CGI_10010424; scaffold1203 WUBlastX LINE_R2-Hero 98076 98174 43 + . . scaffold1203 GLEAN mRNA 96599 98385 0.992512 + . ID=CGI_10010424; scaffold85 WUBlastX DNA_Harbinger 130138 130617 55 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX DNA_Harbinger 130595 130714 88 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_hAT-Tip100 561302 562033 117 - . . . . . -1 -1 -1 . . . scaffold252 WUBlastX DNA_Kolobok-IS4 228072 228482 126 - . . scaffold252 GLEAN mRNA 228093 228335 1 - . ID=CGI_10010770; scaffold1318 WUBlastX DNA_Kolobok-IS4 16952 17443 80 + . . . . . -1 -1 -1 . . . scaffold686 WUBlastX DNA_Harbinger 53120 53713 139 - . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_Harbinger 163602 163772 37 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LTR_Gypsy 281424 281468 22 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold712 WUBlastX LTR_Gypsy 135335 135511 74 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 178709 179206 133 - . . . . . -1 -1 -1 . . . scaffold38934 WUBlastX DNA_Kolobok 45976 46143 86 + . . scaffold38934 GLEAN mRNA 26982 47955 0.375661 + . ID=CGI_10003097; scaffold524 WUBlastX DNA_TcMar-Tc1 276256 276447 74 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Ngaro 73280 73465 92 + . . scaffold412 GLEAN mRNA 49163 134272 0.261275 - . ID=CGI_10018559; scaffold43552 WUBlastX LINE_Penelope 256160 256456 101 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_MuDR 322332 322724 90 + . . scaffold101 GLEAN mRNA 308692 328638 0.999351 + . ID=CGI_10021645; scaffold101 WUBlastX DNA_MuDR 322332 322724 90 + . . scaffold101 GLEAN mRNA 312467 328385 0.843729 - . ID=CGI_10021646; scaffold1885 WUBlastX DNA_Merlin 212438 212806 100 - . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_Penelope 1759 1899 48 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LINE_Penelope 4251 4595 50 + . . . . . -1 -1 -1 . . . C28632 WUBlastX LINE_L1 3513 4220 122 + . . . . . -1 -1 -1 . . . scaffold1394 WUBlastX LINE_L1 49329 49406 26 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L1 638437 639414 90 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 176270 176413 41 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 404150 404701 121 + . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX LINE_RTE-X 18006 18299 74 + . . scaffold1663 GLEAN mRNA 14275 33810 0.998969 - . ID=CGI_10009863; scaffold712 WUBlastX LINE_R2-Hero 344996 345343 245 + . . scaffold712 GLEAN mRNA 336086 347992 0.995237 + . ID=CGI_10016485; scaffold712 WUBlastX LINE_R2-Hero 345475 346533 289 + . . scaffold712 GLEAN mRNA 336086 347992 0.995237 + . ID=CGI_10016485; scaffold42090 WUBlastX LINE_L2 3003 3899 363 - . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX LINE_L2 3848 4546 543 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L2 125526 126239 201 + . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-X 78118 79203 695 + . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-X 79207 79707 276 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Gypsy-Cigr 78987 79058 20 - . . . . . -1 -1 -1 . . . scaffold1411 WUBlastX LTR_Gypsy 123536 124405 167 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX LTR_Pao 73254 73550 136 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 97276 97722 164 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 97706 98755 625 + . . . . . -1 -1 -1 . . . scaffold839 WUBlastX LINE_L1-Tx1 83778 84014 53 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold490 WUBlastX LTR_Pao 177675 178565 837 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 233315 233464 94 - . . . . . -1 -1 -1 . . . scaffold855 WUBlastX LTR_Pao 13326 13670 93 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy-Cigr 232054 232605 128 + . . scaffold1532 GLEAN mRNA 231877 233427 0.438723 + . ID=CGI_10028239; scaffold40586 WUBlastX LTR_Gypsy-Cigr 37876 38421 158 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1 18222 18620 71 + . . . . . -1 -1 -1 . . . scaffold1880 WUBlastX LTR_Pao 191335 191913 196 + . . scaffold1880 GLEAN mRNA 190302 194144 1 - . ID=CGI_10008214; scaffold398 WUBlastX LINE_CR1 4231 4593 83 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold502 WUBlastX LINE_L2 148351 148992 117 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 603087 603290 78 + . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LINE_L2 324424 324957 138 + . . . . . -1 -1 -1 . . . scaffold34420 WUBlastX LINE_L2 1628 2161 137 + . . . . . -1 -1 -1 . . . scaffold34000 WUBlastX LINE_L2 7860 7934 56 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1 194099 194713 119 - . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 10172 10468 97 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 117406 117522 59 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 118191 118463 20 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 32172 32258 38 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 84417 84548 35 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 84584 85120 118 + . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LINE_L2 99867 99947 21 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_DIRS 163353 163529 66 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Ngaro 41997 42536 123 - . . scaffold507 GLEAN mRNA 41380 65568 0.398486 - . ID=CGI_10019084; scaffold37668 WUBlastX LTR_Ngaro 45203 45562 118 - . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX LTR_DIRS 33090 33461 140 - . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX LTR_DIRS 33472 33618 40 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_hAT-Ac 762610 762888 148 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 391131 391286 60 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_IS4EU 694 813 45 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_IS4EU 1440 1676 49 + . . . . . -1 -1 -1 . . . scaffold41162 WUBlastX LTR_Gypsy 88937 90127 87 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold39180 WUBlastX LTR_Gypsy 26966 27010 23 + . . . . . -1 -1 -1 . . . scaffold39180 WUBlastX LTR_Gypsy 27899 27973 39 + . . . . . -1 -1 -1 . . . scaffold1058 WUBlastX DNA_Harbinger 82221 82583 163 + . . scaffold1058 GLEAN mRNA 81813 92966 0.499919 - . ID=CGI_10004879; scaffold213 WUBlastX DNA_Kolobok 79012 79182 38 + . . . . . -1 -1 -1 . . . scaffold1577 WUBlastX LINE_Penelope 31959 32240 128 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_Penelope 45102 45545 141 + . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_TcMar-Tc2 5358 5627 134 - . . . . . -1 -1 -1 . . . C29558 WUBlastX LINE_RTE-X 256 603 142 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_Proto2 169077 169271 36 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-X 1086555 1087031 132 - . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold226 WUBlastX LINE_RTE-X 146018 146506 93 + . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX LINE_RTE-BovB 1253 1906 33 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_RTE-BovB 66669 67031 153 + . . scaffold1794 GLEAN mRNA 63579 68209 1 - . ID=CGI_10019568; scaffold343 WUBlastX LINE_RTE-X 368551 368649 43 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-X 84996 85184 122 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LINE_RTE-X 44256 44384 33 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_RTE-X 163694 163993 48 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1-Tx1 195542 195709 21 - . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX LINE_L1-Tx1 19566 19772 34 - . . scaffold1442 GLEAN mRNA 5012 20569 0.987275 - . ID=CGI_10003583; scaffold37532 WUBlastX LINE_CR1-L2 4512 4598 21 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LTR_Gypsy 201857 203140 986 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LINE_CR1-L2 1673 1936 61 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Ngaro 114594 116153 1103 - . . . . . -1 -1 -1 . . . scaffold809 WUBlastX LTR_Ngaro 106439 107998 1103 + . . scaffold809 GLEAN mRNA 102798 115167 0.991748 + . ID=CGI_10006490; scaffold425 WUBlastX LINE_RTE-X 1097735 1099693 900 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_RTE-X 458416 460350 971 - . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_RTE-X 18291 19007 32 - . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold1511 WUBlastX LINE_L2 64840 66498 1011 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_DIRS 469511 469639 87 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold1634 WUBlastX LTR_Gypsy 87980 88087 55 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 88652 88777 108 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 88836 89195 65 + . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_L1-Tx1 14161 14895 283 - . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_L1-Tx1 12562 13311 161 - . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_L1-Tx1 13287 14039 250 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Sola 562555 564417 864 + . . scaffold169 GLEAN mRNA 562612 565291 1 + . ID=CGI_10022958; scaffold408 WUBlastX LTR_Pao 254199 254732 24 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Pao 254781 255419 313 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Pao 256403 256828 276 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Pao 256782 257330 340 + . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LTR_Gypsy 276386 277117 30 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1142795 1143109 163 - . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy 323554 324060 145 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Gypsy 247320 248192 84 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Ngaro 115165 115518 154 - . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Ngaro 12778 13056 153 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Ngaro 1024006 1024290 99 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold406 WUBlastX LTR_Gypsy 574629 574895 132 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 201315 201779 171 - . . . . . -1 -1 -1 . . . C25642 WUBlastX DNA_IS4EU 1049 1381 177 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_ERV1 90462 91298 159 - . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX LINE_L1-Tx1 29630 30199 95 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_Kolobok 103833 103991 96 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_Kolobok 104281 104493 51 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_L1-Tx1 706056 706475 116 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold31222 WUBlastX LTR_Ngaro 7556 8200 130 + . . . . . -1 -1 -1 . . . scaffold36790 WUBlastX LTR_Ngaro 26028 26633 138 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold42440 WUBlastX DNA_Merlin 44319 44801 149 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Merlin 1035147 1035365 40 - . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_Penelope 11841 12122 70 - . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_RTE-X 95865 96662 87 + . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_RTE-X 348101 348469 106 + . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LINE_RTE-X 100456 100824 106 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_RTE-X 248177 248545 106 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L1-Tx1 126939 127517 122 - . . . . . -1 -1 -1 . . . scaffold1519 WUBlastX LINE_L1-Tx1 70861 70959 21 - . . . . . -1 -1 -1 . . . C31846 WUBlastX LINE_L1-Tx1 767 949 23 - . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L1-Tx1 94519 94671 42 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_L2 214904 215809 559 - . . scaffold82 GLEAN mRNA 207536 221128 0.649891 + . ID=CGI_10025248; scaffold1623 WUBlastX LTR_Gypsy 53457 53675 73 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX LTR_Gypsy 54486 54818 288 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_L1 47096 47938 273 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 589208 589450 36 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 1184724 1185521 151 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 77225 80539 892 - . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 274980 276794 1054 - . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LTR_Gypsy-Troyk 100824 101606 132 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold632 WUBlastX LTR_Pao 444397 445725 1304 + . . . . . -1 -1 -1 . . . scaffold42112 WUBlastX LTR_Gypsy 67647 67955 106 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LTR_Gypsy-Cigr 142481 142984 179 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 432143 432697 145 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_CR1-L2 242355 242765 132 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_L2 589047 589658 122 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 212918 213688 165 - . . . . . -1 -1 -1 . . . scaffold39960 WUBlastX LTR_Gypsy 24979 25749 171 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy-Cigr 80544 81008 175 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1133427 1133612 55 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; C25178 WUBlastX LTR_Ngaro 1 255 197 + . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 29086 29271 28 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Gypsy 42888 43376 24 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold751 WUBlastX DNA_IS4EU 97197 97895 154 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX DNA_Kolobok-IS4 312543 312713 41 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_Harbinger 165442 165591 80 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_L1-Tx1 262561 263187 65 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_L1-Tx1 1445582 1446265 78 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_Penelope 557469 558344 136 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 57216 57464 139 + . . . . . -1 -1 -1 . . . C33510 WUBlastX LINE_RTE-X 4693 5073 85 + . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LINE_RTE-X 143111 143446 57 - . . scaffold43258 GLEAN mRNA 134740 154295 0.483992 + . ID=CGI_10009634; scaffold1399 WUBlastX DNA_Sola 5236 6015 114 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_DIRS 79115 79450 184 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 39536 39859 197 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1-Tx1 145231 145485 79 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 332873 333007 80 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Pao 294004 294087 35 + . . . . . -1 -1 -1 . . . C33952 WUBlastX DNA_Helitron 5 1828 1122 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-X 165952 167313 377 + . . scaffold1104 GLEAN mRNA 162897 187197 0.499418 + . ID=CGI_10020361; scaffold141 WUBlastX LTR_Gypsy 152526 153125 95 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 4837 5379 269 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy-Cigr 406787 407092 315 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy-Cigr 406948 408729 584 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy-Cigr 408711 409298 438 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_CR1-L2 5296 5646 115 + . . . . . -1 -1 -1 . . . scaffold43290 WUBlastX LINE_L2 208532 208663 42 + . . scaffold43290 GLEAN mRNA 208134 214602 0.737369 + . ID=CGI_10009648; scaffold733 WUBlastX LINE_CR1 128913 129122 36 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LINE_L2 142438 142503 20 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_CR1 2454 2573 20 - . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_L2 41553 41918 42 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX LTR_DIRS 7970 8221 98 - . . scaffold1377 GLEAN mRNA 4634 19279 0.99195 + . ID=CGI_10008617; C34110 WUBlastX DNA_IS4EU 13137 13328 55 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; C20530 WUBlastX DNA_IS4EU 135 365 107 + . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX DNA_IS4EU 284947 285351 133 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Harbinger 391256 391375 91 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Harbinger 391833 391964 85 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_Harbinger 89628 89918 119 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_Harbinger 89908 90027 39 - . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX DNA_Harbinger 148909 149070 101 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LTR_Gypsy 76183 76368 21 + . . . . . -1 -1 -1 . . . scaffold547 WUBlastX DNA_TcMar-Tc1 457596 457922 73 - . . . . . -1 -1 -1 . . . scaffold1747 WUBlastX DNA_TcMar-Tc2 26425 27360 143 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LINE_L1 20640 20810 99 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; C22542 WUBlastX LINE_L1-Tx1 80 169 29 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_L1-Tx1 11695 12018 51 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_RTE-X 369863 370627 78 - . . . . . -1 -1 -1 . . . C14746 WUBlastX LINE_RTE-BovB 1 267 182 + . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LINE_RTE-BovB 233056 233322 163 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy 47161 47394 188 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LTR_Ngaro 271069 271848 190 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold1154 WUBlastX LTR_Ngaro 1029714 1030493 176 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 1120237 1120551 56 - . . scaffold77 GLEAN mRNA 1111468 1123998 0.545449 + . ID=CGI_10028021; scaffold22 WUBlastX LINE_L1-Tx1 670490 670765 94 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 670788 671108 29 + . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX DNA_TcMar-Tc1 218677 218787 25 - . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LTR_Pao 254555 255190 79 + . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 96285 96752 135 - . . . . . -1 -1 -1 . . . C29968 WUBlastX LTR_Gypsy 9 1526 1149 - . . . . . -1 -1 -1 . . . C29968 WUBlastX LTR_Gypsy 1514 1801 275 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 265520 266068 216 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LTR_Gypsy 890818 893136 1468 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 126992 129181 1448 + . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LINE_L2 12565 13098 144 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 500210 500275 32 + . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L2 59295 59723 38 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L2 200166 201224 70 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LTR_Gypsy 36819 37382 200 - . . scaffold189 GLEAN mRNA 16396 38520 0.48054 + . ID=CGI_10018663; scaffold1098 WUBlastX LTR_DIRS 151040 152029 57 - . . . . . -1 -1 -1 . . . scaffold40420 WUBlastX LTR_DIRS 1 504 195 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Ngaro 350955 351149 41 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Ngaro 351340 351741 118 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Ngaro 196270 196362 44 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 211983 213005 178 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 246234 246476 54 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 608872 609252 187 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Fot1 71199 71285 37 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Fot1 72915 73256 34 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 67996 68238 82 - . . . . . -1 -1 -1 . . . C32246 WUBlastX DNA_TcMar-Tc1 8600 9031 102 - . . . . . -1 -1 -1 . . . scaffold739 WUBlastX DNA_TcMar-Tc1 82005 82223 86 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_TcMar-Tc1 56911 57087 61 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_L1-Tx1 183173 183814 168 - . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_L1-Tx1 64408 64662 82 - . . scaffold42656 GLEAN mRNA 57925 65294 1 - . ID=CGI_10007413; scaffold1186 WUBlastX LTR_Pao 203615 203848 74 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1750 WUBlastX LTR_Pao 634133 634309 36 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 636496 636777 216 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1241 WUBlastX LINE_L1-Tx1 342127 343578 437 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1-Tx1 343785 345548 480 + . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Maverick 63260 64048 335 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Pao 197362 198204 491 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Pao 198218 199081 646 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_L1-Tx1 404655 407564 1091 + . . scaffold332 GLEAN mRNA 403551 412368 0.544643 + . ID=CGI_10020886; scaffold332 WUBlastX LINE_L1-Tx1 408121 408456 20 + . . scaffold332 GLEAN mRNA 403551 412368 0.544643 + . ID=CGI_10020886; scaffold41636 WUBlastX LTR_Pao 114085 114513 232 + . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LINE_CR1 892 942 26 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_CR1 600386 601423 181 + . . scaffold601 GLEAN mRNA 586023 611758 0.912594 - . ID=CGI_10026838; scaffold313 WUBlastX LTR_Ngaro 1023659 1024000 111 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold370 WUBlastX LTR_ERV1 848587 848802 26 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 398195 398638 151 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 398680 398910 42 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Harbinger 251733 251819 43 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Gypsy 65711 66133 28 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 28436 28672 51 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_IS4EU 433157 433372 35 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_hAT-Ac 762147 762488 97 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX DNA_Kolobok 2808 3143 55 + . . . . . -1 -1 -1 . . . C35786 WUBlastX LINE_L1 16389 16439 21 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 63146 63412 140 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX LINE_RTE-X 211642 212292 178 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LTR_Gypsy 18978 19937 768 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 232458 233870 660 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_L2 250736 253144 1431 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 92142 92291 122 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 92653 93237 247 - . . . . . -1 -1 -1 . . . scaffold36390 WUBlastX LTR_Pao 30133 30213 43 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_L2 387290 387553 83 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_L2 387556 388242 401 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_L2 388266 388556 194 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_L2 388556 389056 333 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_L2 389049 389657 186 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_L2 389605 390225 156 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_L2 390221 390433 51 - . . . . . -1 -1 -1 . . . scaffold1564 WUBlastX LINE_CR1-L2 4296 5000 96 + . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1 324065 324244 35 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 544699 544854 85 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 111960 112370 176 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX LTR_Copia 36870 37010 81 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX LTR_Copia 37198 37275 24 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX LTR_Copia 37238 37666 121 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Gypsy 232111 232344 106 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_ERV1 147892 148146 38 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX DNA_En-Spm 417499 418320 195 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold790 WUBlastX LTR_Gypsy 229856 229987 63 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_DIRS 3628 3885 73 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_DIRS 195230 195553 52 - . . . . . -1 -1 -1 . . . C16408 WUBlastX DNA_En-Spm 16 375 201 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LTR_Gypsy 329763 330557 202 - . . scaffold1036 GLEAN mRNA 330530 330844 0.617695 - . ID=CGI_10019962; scaffold1036 WUBlastX LTR_Gypsy 329763 330557 202 - . . scaffold1036 GLEAN mRNA 322076 338878 0.999998 + . ID=CGI_10019961; scaffold1899 WUBlastX LINE_R2-Hero 213960 213995 31 + . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_R2-Hero 214195 214383 56 + . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_R2-Hero 214571 214765 123 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_IS4EU 89082 90041 65 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; C34110 WUBlastX DNA_IS4EU 12150 12776 32 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; C31910 WUBlastX DNA_TcMar-Tc2 3883 4068 87 - . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_RTE-X 72569 72757 142 - . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_RTE-X 72792 72986 81 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_RTE-X 236675 237181 119 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-BovB 869461 869538 22 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 280753 280950 72 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 281335 282327 845 + . . . . . -1 -1 -1 . . . scaffold707 WUBlastX LTR_Gypsy 2905 4416 885 + . . . . . -1 -1 -1 . . . scaffold36398 WUBlastX LTR_Gypsy 28863 29660 31 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Pao 25090 25329 32 + . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Pao 25645 25977 154 + . . . . . -1 -1 -1 . . . scaffold1063 WUBlastX LTR_Copia 62 1459 604 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy 335435 336592 795 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_L2 222955 223572 211 - . . scaffold43726 GLEAN mRNA 221786 248971 0.998252 + . ID=CGI_10012027; scaffold208 WUBlastX LINE_L2 172024 172227 58 - . . . . . -1 -1 -1 . . . C28282 WUBlastX LINE_L2 4484 4963 167 - . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LTR_Ngaro 127648 128346 110 + . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX LTR_Ngaro 5477 6130 154 + . . scaffold36794 GLEAN mRNA 3731 8474 0.499919 + . ID=CGI_10002119; scaffold1616 WUBlastX LTR_Ngaro 23716 24498 200 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 1060442 1060786 66 + . . scaffold1423 GLEAN mRNA 1057538 1060967 0.980388 + . ID=CGI_10025454; scaffold1456 WUBlastX LTR_Gypsy 117450 117746 112 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 61779 62009 21 + . . . . . -1 -1 -1 . . . scaffold38448 WUBlastX RC_Helitron 48678 50282 197 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Kolobok 35746 35991 116 - . . scaffold1221 GLEAN mRNA 35728 35946 1 - . ID=CGI_10019725; scaffold358 WUBlastX LINE_L1 79658 80041 61 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_L1-Tx1 219216 219581 194 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 393214 393585 80 - . . . . . -1 -1 -1 . . . scaffold1354 WUBlastX LINE_RTE-X 167756 167944 33 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_Sola 325058 326125 135 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L1-Tx1 93273 93941 127 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_L1-Tx1 62604 62951 38 - . . scaffold42656 GLEAN mRNA 57925 65294 1 - . ID=CGI_10007413; scaffold37532 WUBlastX DNA_TcMar-Tc2 17279 17635 211 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX RC_Helitron 144415 144870 97 - . . . . . -1 -1 -1 . . . scaffold40476 WUBlastX LTR_Gypsy 19628 20242 463 - . . . . . -1 -1 -1 . . . scaffold34910 WUBlastX LTR_Gypsy 3777 4538 488 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_L2 30654 33878 1466 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_Gypsy-Cigr 249021 250142 402 - . . scaffold925 GLEAN mRNA 245750 251543 0.996749 - . ID=CGI_10017422; scaffold36 WUBlastX LTR_Gypsy 3719 5191 1108 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold1097 WUBlastX LINE_L2 23919 24878 104 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_CR1 664928 665530 113 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LTR_Foamy 775020 775103 31 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_CR1 441627 442046 21 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_ERV1 37632 37715 53 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1687813 1688433 152 - . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LTR_DIRS 463629 463994 68 - . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX LTR_Ngaro 17764 18021 86 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 316481 316651 26 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 317475 317882 45 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Gypsy 497732 497770 20 + . . . . . -1 -1 -1 . . . scaffold243 WUBlastX DNA_Kolobok 46617 46901 151 - . . scaffold243 GLEAN mRNA 45508 46823 0.518363 - . ID=CGI_10006814; C30752 WUBlastX LINE_L1 2812 3054 153 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Ngaro 1519300 1519650 228 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_Penelope 557508 558173 216 + . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_RTE-X 141467 142198 112 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX LINE_RTE-X 472096 472803 155 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-BovB 444461 445084 115 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Sola 296152 296826 94 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Sola 296837 297112 70 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LTR_Gypsy 125375 126427 121 - . . . . . -1 -1 -1 . . . C31978 WUBlastX RC_Helitron 7651 7776 84 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Ngaro 520222 520983 192 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 546324 546500 51 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 547694 548059 165 - . . . . . -1 -1 -1 . . . scaffold37900 WUBlastX DNA_IS4EU 30735 31409 191 - . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold973 WUBlastX LTR_Gypsy 216577 217116 116 - . . . . . -1 -1 -1 . . . scaffold40476 WUBlastX LTR_Gypsy 27698 28060 23 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_Kolobok-IS4 432675 433091 209 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_Kolobok-IS4 433094 433327 65 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 459517 459969 47 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 460247 460459 46 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_Penelope 63338 63712 255 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_Penelope 116216 116950 188 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L2 413087 413638 224 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold1730 WUBlastX LINE_L2 303275 304111 172 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 90554 90730 103 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold41684 WUBlastX DNA_TcMar-Tc1 79578 79991 117 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_L2 372295 372846 62 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold41988 WUBlastX DNA_PiggyBac 97016 97126 84 + . . . . . -1 -1 -1 . . . C34792 WUBlastX LINE_RTE-X 7560 8603 120 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 674963 675100 27 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 204071 204295 55 + . . . . . -1 -1 -1 . . . scaffold415 WUBlastX LTR_ERV1 74082 74180 39 - . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX DNA_TcMar-Tc1 329818 330864 165 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 712094 712612 318 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 712602 713060 482 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 713066 713845 452 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 713820 714500 673 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold43208 WUBlastX LINE_L2 103031 105949 1560 + . . . . . -1 -1 -1 . . . scaffold1173 WUBlastX LTR_Gypsy 112827 115133 1947 - . . . . . -1 -1 -1 . . . scaffold36664 WUBlastX LTR_Gypsy-Cigr 25274 27289 1633 + . . . . . -1 -1 -1 . . . scaffold36664 WUBlastX LTR_Gypsy-Cigr 27268 27696 237 + . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LTR_Pao 75754 76443 35 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 76722 77186 194 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold102 WUBlastX LTR_Gypsy 1429745 1432132 1568 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 1432365 1432886 271 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 116144 117679 1112 + . . . . . -1 -1 -1 . . . C23734 WUBlastX LTR_Gypsy 23 724 246 - . . C23734 GLEAN mRNA 512 712 1 - . ID=CGI_10000149; scaffold870 WUBlastX LTR_Gypsy 140458 141402 223 - . . scaffold870 GLEAN mRNA 139854 163294 0.423462 + . ID=CGI_10007496; scaffold42 WUBlastX LTR_Gypsy-Cigr 5376 6041 246 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L2 707753 708112 72 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 168022 168318 169 - . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LTR_Gypsy 104842 106017 212 - . . . . . -1 -1 -1 . . . scaffold38116 WUBlastX LTR_Gypsy 16479 16751 21 - . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_IS4EU 92439 92996 227 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_L1-Tx1 172667 172906 52 - . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1-Tx1 24112 24897 83 + . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX LINE_L1-Tx1 52287 53423 125 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_L1-Tx1 268946 269476 205 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 375380 375586 35 - . . . . . -1 -1 -1 . . . C22754 WUBlastX LINE_RTE-X 1126 1584 43 - . . . . . -1 -1 -1 . . . scaffold174 WUBlastX DNA_Sola 41685 41771 25 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_Sola 134947 135828 35 + . . scaffold1397 GLEAN mRNA 135079 136782 0.995825 + . ID=CGI_10017117; scaffold1397 WUBlastX DNA_Sola 135952 136779 184 + . . scaffold1397 GLEAN mRNA 135079 136782 0.995825 + . ID=CGI_10017117; scaffold28372 WUBlastX LINE_RTE-X 3570 3875 103 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_RTE-X 203006 203956 139 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX DNA_TcMar-Tc1 696398 696631 41 - . . . . . -1 -1 -1 . . . scaffold1679 WUBlastX LTR_Gypsy 27572 28150 139 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold1679 WUBlastX LTR_Gypsy 29308 30708 1157 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold427 WUBlastX LTR_Gypsy 76749 79736 2135 + . . scaffold427 GLEAN mRNA 74413 82948 0.777732 - . ID=CGI_10006661; scaffold514 WUBlastX LTR_Gypsy-Cigr 315065 315931 236 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_L2 64027 64620 30 - . . . . . -1 -1 -1 . . . C25486 WUBlastX LTR_Gypsy 2719 2775 21 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 741313 741882 109 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 267321 267572 46 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1885 WUBlastX LTR_Gypsy 238226 238366 29 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Gypsy 12450 12638 38 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Gypsy 12656 12862 64 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Gypsy 12877 13110 132 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_RTE-X 36210 37103 146 + . . scaffold1704 GLEAN mRNA 35457 41695 0.675217 - . ID=CGI_10010162; scaffold1653 WUBlastX LINE_RTE-X 6228 6641 62 - . . . . . -1 -1 -1 . . . scaffold309 WUBlastX LINE_RTE-X 73508 74680 200 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_RTE-X 379869 380618 175 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_Maverick 134056 134436 285 + . . scaffold1730 GLEAN mRNA 128597 135866 0.888729 - . ID=CGI_10012255; scaffold42190 WUBlastX DNA_Sola 17605 17865 175 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc1 49413 49634 132 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold1328 WUBlastX LTR_Gypsy 47208 47651 67 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L2 36535 37059 105 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_CR1-L2 86917 87312 165 - . . . . . -1 -1 -1 . . . scaffold465 WUBlastX LINE_CR1 2393 2842 117 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 27857 28315 82 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 445794 445904 60 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 445864 446292 183 - . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1 16104 16487 66 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold35994 WUBlastX DNA_PiggyBac 19147 19311 79 - . . . . . -1 -1 -1 . . . scaffold41660 WUBlastX LINE_RTE-X 80133 80936 180 - . . scaffold41660 GLEAN mRNA 76250 87688 0.999676 + . ID=CGI_10005399; scaffold198 WUBlastX LINE_RTE-X 1182813 1183283 109 + . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX LINE_RTE-X 37960 38439 193 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_PiggyBac 453631 454269 56 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_L1-Tx1 115016 115261 62 + . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LINE_L1-Tx1 18283 18438 50 - . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX LINE_L1-Tx1 174794 178579 1859 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_CR1-L2 15013 15135 40 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold1062 WUBlastX LTR_Pao 51444 52094 228 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 317738 318193 293 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_DIRS 1532068 1532673 195 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 38648 38740 31 - . . . . . -1 -1 -1 . . . C34630 WUBlastX DNA_Harbinger 328 1194 142 + . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1 162873 162983 23 - . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 76800 77108 108 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Maverick 48974 49240 157 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Maverick 543728 544219 152 + . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX LINE_RTE-BovB 368912 368995 43 - . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX LINE_RTE-BovB 369006 369764 191 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 278227 278808 201 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy 122500 122757 256 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy 124945 125055 86 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1 50624 51775 189 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Pao 302841 303122 132 - . . . . . -1 -1 -1 . . . C15852 WUBlastX LTR_Gypsy 4 312 329 - . . . . . -1 -1 -1 . . . scaffold60 WUBlastX DNA_Academ 98687 98941 89 - . . . . . -1 -1 -1 . . . scaffold60 WUBlastX DNA_Academ 97527 97793 44 - . . . . . -1 -1 -1 . . . C22804 WUBlastX DNA_Crypton 439 1647 199 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_IS4EU 18065 18457 85 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_IS4EU 233880 234206 97 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LINE_RTE-X 173715 174107 111 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; C28006 WUBlastX LINE_CR1-L2 3826 3963 53 - . . . . . -1 -1 -1 . . . C31982 WUBlastX LTR_Ngaro 9036 9143 34 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy-Gmr1 176136 176798 320 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LINE_L1 533741 533986 82 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1-Tx1 37143 38144 133 - . . scaffold1174 GLEAN mRNA 34818 43941 1 - . ID=CGI_10026023; scaffold61 WUBlastX LINE_RTE-X 91091 91441 68 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold210 WUBlastX LINE_RTE-X 141330 141659 157 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold43076 WUBlastX DNA_PiggyBac 157509 157586 27 - . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_RTE-BovB 266052 266468 61 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 310329 310910 87 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 16403 17212 502 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX RC_Helitron 652011 653207 563 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX RC_Helitron 653555 656380 1654 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Ngaro 117975 118856 243 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LTR_Ngaro 272087 272968 243 + . . scaffold71 GLEAN mRNA 268268 281594 0.588785 + . ID=CGI_10015059; scaffold425 WUBlastX LINE_L2 597482 598156 166 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 1335840 1336007 26 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX DNA_Harbinger 339232 339582 168 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX DNA_Harbinger 340552 340863 35 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX DNA_Harbinger 338904 339005 93 - . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX DNA_Harbinger 72824 73279 285 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy 191137 191208 20 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_L1 363901 363963 20 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 263274 263456 23 + . . . . . -1 -1 -1 . . . C29498 WUBlastX LTR_Pao 4862 6391 173 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Pao 400982 401167 25 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_CR1-L2 753269 753985 119 + . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_L2 41206 42978 177 - . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX LTR_Ngaro 42784 43164 163 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold1067 WUBlastX DNA_En-Spm 98982 100034 247 + . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1448 WUBlastX LTR_Gypsy 195603 195899 201 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_R2-Hero 115945 116220 42 + . . scaffold896 GLEAN mRNA 79994 116374 0.57033 - . ID=CGI_10022832; scaffold32786 WUBlastX DNA_IS4EU 6541 7056 90 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_IS4EU 515423 516205 288 + . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX DNA_Kolobok-IS4 67375 67941 93 - . . . . . -1 -1 -1 . . . scaffold33638 WUBlastX DNA_Kolobok-IS4 3468 4034 87 + . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX LTR_Ngaro 43155 43442 176 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold1009 WUBlastX LINE_L1 1833212 1833337 50 - . . . . . -1 -1 -1 . . . scaffold31320 WUBlastX LINE_RTE-X 6948 7799 236 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_Gypsy 830493 834440 2682 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1 615065 615217 61 + . . . . . -1 -1 -1 . . . scaffold739 WUBlastX LTR_Pao 39837 40049 84 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Harbinger 126518 127066 293 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_Harbinger 32504 33235 286 + . . . . . -1 -1 -1 . . . scaffold331 WUBlastX LINE_L1-Tx1 35466 36095 277 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_Gypsy 452497 452775 23 + . . . . . -1 -1 -1 . . . C28298 WUBlastX LINE_RTE-X 1526 1669 37 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Ngaro 301264 301572 71 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; C32176 WUBlastX LTR_Pao 7762 7890 46 - . . . . . -1 -1 -1 . . . scaffold718 WUBlastX LINE_CR1-L2 17552 18175 112 + . . . . . -1 -1 -1 . . . scaffold39384 WUBlastX LTR_Gypsy 44918 45343 301 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 476696 477151 379 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Gypsy 921350 921733 99 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold1599 WUBlastX DNA_TcMar-Marin 727475 727645 56 + . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_L1-Tx1 156558 157286 281 + . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L1-Tx1 827390 828490 82 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L1-Tx1 385991 386239 30 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 739175 739666 381 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy 41052 41852 331 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L2 65319 65819 175 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Harbinger 115383 115502 139 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Harbinger 115948 116199 188 + . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 41034 41663 70 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 797516 797668 34 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_L1-Tx1 136229 136336 24 - . . scaffold1710 GLEAN mRNA 132993 137298 0.651135 - . ID=CGI_10022342; scaffold1710 WUBlastX LINE_L1-Tx1 136330 136929 297 - . . scaffold1710 GLEAN mRNA 132993 137298 0.651135 - . ID=CGI_10022342; scaffold392 WUBlastX LINE_Penelope 480567 481007 189 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_Penelope 481337 481786 78 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 78511 78795 43 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_R2 78624 79010 70 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX DNA_TcMar-Tc1 152225 152605 157 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold485 WUBlastX DNA_hAT 121678 123216 274 - . . scaffold485 GLEAN mRNA 121480 123159 1 - . ID=CGI_10024145; scaffold393 WUBlastX LTR_Gypsy 994164 994394 25 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1143293 1143637 52 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_Kolobok 813354 813485 28 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold152 WUBlastX LINE_Penelope 149948 150622 228 - . . . . . -1 -1 -1 . . . scaffold43108 WUBlastX LTR_Gypsy 123411 123485 23 - . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 65662 65748 24 + . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LINE_RTE-BovB 68618 68989 250 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_RTE-X 184246 184665 101 - . . scaffold82 GLEAN mRNA 181182 187437 1 + . ID=CGI_10025244; scaffold719 WUBlastX LINE_L1-Tx1 185268 186401 244 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 155698 155973 58 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 38573 39007 43 + . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_Gypsy 25531 27123 343 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_R2-Hero 114918 115406 119 - . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_R2-Hero 115649 116044 213 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_hAT-hATw 102574 103338 311 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_hAT-hATw 103608 103838 41 - . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX LINE_L1 41384 41911 93 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold1358 WUBlastX LINE_RTE-BovB 141986 142096 54 - . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_RTE-BovB 140548 141162 131 - . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_RTE-BovB 141346 141558 104 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 754288 754920 283 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 754967 755134 84 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Ngaro 200079 200813 342 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 415694 416260 131 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX DNA_Kolobok 527 808 104 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX DNA_Kolobok 2173 2397 27 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX DNA_Kolobok 3078 3314 103 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LTR_DIRS 358034 358834 296 - . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold321 WUBlastX LINE_RTE-X 512328 512576 128 - . . . . . -1 -1 -1 . . . scaffold39482 WUBlastX LTR_Pao 46739 47647 286 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_L1-Tx1 88148 88195 20 - . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LTR_Gypsy 72270 72791 142 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Gypsy 133316 133420 55 - . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LTR_Gypsy 25259 25435 79 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold550 WUBlastX LTR_Ngaro 312686 313528 224 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX RC_Helitron 343759 345078 339 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 100786 101085 76 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 101222 101761 136 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 101746 102051 114 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 217920 218075 35 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold602 WUBlastX LINE_RTE-X 282282 283199 285 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 235370 235684 143 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_TcMar-Tc1 188871 189011 74 + . . . . . -1 -1 -1 . . . scaffold42570 WUBlastX DNA_Merlin 2501 3301 289 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_L2 64455 64625 40 - . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX LINE_CR1 90980 91441 159 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_CR1-L2 81789 81959 29 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1885 WUBlastX LTR_Gypsy 238538 238852 140 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok 377600 377836 89 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX DNA_TcMar-Tc1 249948 250487 140 + . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX LINE_RTE-X 86411 86608 98 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold1448 WUBlastX LINE_RTE-BovB 107301 107969 165 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_RTE-X 250939 251442 36 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1-Tx1 856254 856535 92 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L2 480274 481080 373 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LTR_Pao 273407 273670 41 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold535 WUBlastX DNA_IS4EU 4266 4967 372 - . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold954 WUBlastX DNA_Kolobok-IS4 209348 210061 340 + . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX DNA_TcMar-m44 4877 5068 50 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Ngaro 512077 512706 217 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_L1 148033 148224 43 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold1561 WUBlastX LINE_RTE-X 98881 99909 246 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold41598 WUBlastX DNA_En-Spm 99602 99970 80 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_CR1-L2 206893 207615 66 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; C31270 WUBlastX LINE_CR1-L2 8165 8992 300 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1-L2 322480 323793 217 + . . . . . -1 -1 -1 . . . C29106 WUBlastX LTR_Ngaro 1992 2219 137 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 268987 269631 32 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 10572 10748 32 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold38284 WUBlastX LTR_Gypsy 38569 38994 32 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LINE_L1 53326 53652 73 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L1-Tx1 843163 843819 191 + . . scaffold1785 GLEAN mRNA 838180 855518 0.197068 - . ID=CGI_10024401; scaffold39758 WUBlastX LINE_RTE-BovB 62980 63174 31 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold43804 WUBlastX LINE_RTE-X 213118 214191 298 + . . scaffold43804 GLEAN mRNA 206873 222843 0.544849 - . ID=CGI_10012559; scaffold541 WUBlastX LINE_RTE-X 360385 360720 76 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 256474 257235 182 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 257348 258307 84 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 258334 258621 64 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Sola 315625 315825 96 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 271714 272136 261 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 272165 272380 127 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 401256 401624 63 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_TcMar-Tc1 49737 50288 193 + . . . . . -1 -1 -1 . . . scaffold1503 WUBlastX DNA_TcMar-Tc1 57620 57901 26 - . . scaffold1503 GLEAN mRNA 55967 67698 1 + . ID=CGI_10009528; scaffold43630 WUBlastX LINE_CR1 283726 284034 123 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 87908 88105 86 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_Penelope 44082 44279 34 - . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_CR1-L2 225089 225832 306 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX LINE_CR1 154399 154545 72 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Gypsy 26965 28368 386 + . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_DIRS 130673 131716 253 - . . . . . -1 -1 -1 . . . scaffold34388 WUBlastX LINE_RTE-X 8385 8528 26 - . . . . . -1 -1 -1 . . . C30792 WUBlastX DNA_TcMar-Tc1 6921 7187 84 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX DNA_TcMar-Tc1 57046 57825 334 - . . . . . -1 -1 -1 . . . scaffold35896 WUBlastX DNA_TcMar-Tc1 9402 9929 154 + . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold35896 WUBlastX DNA_TcMar-Tc1 10072 10335 111 + . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold204 WUBlastX LINE_CR1 1078522 1078671 23 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 307917 308312 82 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_Penelope 157334 158335 361 - . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX DNA_MuDR 108033 108587 62 - . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold1036 WUBlastX DNA_Maverick 207153 207254 57 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 961958 962227 27 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_CR1 129671 130129 308 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold40794 WUBlastX LTR_Pao 71954 72403 89 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Gypsy 670763 671020 125 - . . . . . -1 -1 -1 . . . scaffold37426 WUBlastX LTR_DIRS 8164 8589 150 + . . . . . -1 -1 -1 . . . scaffold1333 WUBlastX LTR_Ngaro 54289 55152 333 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold41388 WUBlastX LINE_RTE-X 7911 8231 88 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_TcMar-Pogo 64256 65023 377 + . . . . . -1 -1 -1 . . . scaffold42046 WUBlastX LINE_RTE-X 13811 14869 323 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LINE_L1-Tx1 160402 161223 271 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_CR1-L2 206085 206840 175 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1-L2 207088 207774 133 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold113 WUBlastX LTR_Ngaro 119819 120007 89 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Ngaro 120022 120408 189 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Harbinger 251720 252136 201 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Harbinger 103207 103707 214 - . . . . . -1 -1 -1 . . . scaffold35712 WUBlastX LINE_RTE-X 6532 7506 278 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold1112 WUBlastX LINE_RTE-X 237468 238109 66 - . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_TcMar-Tc1 95409 96041 202 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_L1-Tx1 662608 662679 21 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L1-Tx1 895201 896358 357 - . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_CR1 89747 90013 183 - . . . . . -1 -1 -1 . . . scaffold230 WUBlastX DNA_hAT-Tip100 129691 129825 56 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold37816 WUBlastX LTR_Ngaro 31323 31706 111 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX DNA_TcMar-Fot1 424581 426278 402 - . . . . . -1 -1 -1 . . . scaffold1173 WUBlastX DNA_TcMar-m44 68376 69146 453 + . . scaffold1173 GLEAN mRNA 66584 69723 1 + . ID=CGI_10005745; scaffold247 WUBlastX LTR_Gypsy 501480 501644 85 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX DNA_TcMar-Tc1 80158 81195 431 - . . scaffold1104 GLEAN mRNA 59457 92250 0.999673 + . ID=CGI_10020353; scaffold1593 WUBlastX LINE_L1-Tx1 9262 9678 40 - . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 60296 60511 120 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 22773 22970 111 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; C31246 WUBlastX LTR_Gypsy-Troyk 3018 3191 21 + . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_L1-Tx1 527461 528672 360 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LTR_Gypsy 21173 21571 180 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LTR_Gypsy 21565 22197 315 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 126695 126976 114 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_R2-Hero 398565 398804 171 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 268978 269442 43 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy 43901 43945 25 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_Penelope 122012 122518 286 - . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX LINE_L1-Tx1 41235 41378 68 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold588 WUBlastX LINE_RTE-X 410803 411051 69 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_CR1 45474 45701 144 - . . . . . -1 -1 -1 . . . scaffold36118 WUBlastX LTR_Gypsy-Cigr 259 1416 269 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 911205 911948 334 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 20436 20639 61 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 83194 83847 324 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold1307 WUBlastX LINE_L1-Tx1 195993 196358 79 - . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LINE_CR1 51631 52332 519 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy 83033 83773 208 + . . . . . -1 -1 -1 . . . scaffold1103 WUBlastX LINE_L2 12576 12944 43 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold1794 WUBlastX DNA_Academ 551556 552140 217 - . . scaffold1794 GLEAN mRNA 551697 552194 0.854769 - . ID=CGI_10019596; scaffold109 WUBlastX LTR_Gypsy 71495 71866 179 - . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 20629 20898 107 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LTR_DIRS 109218 110102 387 - . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 20507 20671 48 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_hAT-Tip100 123400 124236 305 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_IS4EU 1154744 1155301 216 + . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1155538 1155711 93 + . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1156241 1156813 160 + . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold40988 WUBlastX LINE_L1 18303 19349 449 + . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_RTE-X 114194 115132 423 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Academ 34647 36356 476 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 15400 16284 514 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_IS4EU 231119 231310 30 + . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 36842 37027 92 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 136907 138229 273 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 232625 232801 150 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LINE_L1-Tx1 127617 128279 67 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold621 WUBlastX LINE_CR1 437992 438882 501 - . . . . . -1 -1 -1 . . . scaffold1103 WUBlastX LINE_CR1 12507 12890 21 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold71 WUBlastX LTR_Ngaro 270517 272028 431 + . . scaffold71 GLEAN mRNA 268268 281594 0.588785 + . ID=CGI_10015059; scaffold1758 WUBlastX LTR_Ngaro 126024 127535 431 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 474006 474560 25 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Kolobok 115795 116046 141 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Kolobok 116049 116735 157 - . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX LINE_RTE-X 33107 33997 281 - . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX LINE_RTE-X 34011 34319 194 - . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_L1-Tx1 75713 77839 341 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold942 WUBlastX LINE_L1-Tx1 89199 89498 97 + . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LINE_CR1 38970 39833 385 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 85959 86132 54 + . . . . . -1 -1 -1 . . . scaffold38654 WUBlastX LINE_Penelope 33658 34395 233 - . . . . . -1 -1 -1 . . . C29438 WUBlastX LINE_RTE-X 4440 5207 220 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold1750 WUBlastX LINE_RTE-X 648918 649691 103 + . . . . . -1 -1 -1 . . . scaffold608 WUBlastX LINE_L1-Tx1 53145 53825 39 - . . . . . -1 -1 -1 . . . scaffold608 WUBlastX LINE_L1-Tx1 53801 54232 105 - . . . . . -1 -1 -1 . . . scaffold608 WUBlastX LINE_L1-Tx1 54694 55662 136 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LINE_L2 206167 206547 182 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_L2 206552 206770 142 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_L2 206841 207317 157 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold271 WUBlastX DNA_Academ 188879 189073 22 - . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold271 WUBlastX DNA_Academ 189203 189589 55 - . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold317 WUBlastX LTR_Gypsy 89932 90570 356 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1-Tx1 209609 209740 57 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold1329 WUBlastX LTR_DIRS 263063 263335 68 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_DIRS 263846 264100 127 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_DIRS 264088 264399 163 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_DIRS 264401 264598 86 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_TcMar-m44 685678 686607 583 + . . scaffold481 GLEAN mRNA 661200 686862 0.995695 + . ID=CGI_10027232; scaffold733 WUBlastX DNA_TcMar-m44 216318 217247 583 - . . scaffold733 GLEAN mRNA 216063 223733 0.792042 - . ID=CGI_10025867; scaffold733 WUBlastX DNA_TcMar-m44 221317 222246 583 - . . scaffold733 GLEAN mRNA 216063 223733 0.792042 - . ID=CGI_10025867; scaffold1157 WUBlastX LINE_RTE-X 39799 40167 211 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_L2 135388 136344 514 + . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LTR_Gypsy 71381 71578 27 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 534424 534852 235 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_Kolobok 813748 814041 104 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 814123 814320 117 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 814416 815336 230 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 813300 813458 98 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold39642 WUBlastX DNA_Maverick 4000 5163 528 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L2 384456 385016 309 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_RTE-X 267525 268415 558 - . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX DNA_En-Spm 20962 22257 544 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Ngaro 47075 47629 312 - . . . . . -1 -1 -1 . . . scaffold35346 WUBlastX DNA_Maverick 20486 20725 22 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_Maverick 182573 182929 251 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 294115 296121 442 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_RTE-X 324483 325025 188 - . . . . . -1 -1 -1 . . . C30324 WUBlastX LINE_L1-Tx1 4216 5004 218 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_CR1-L2 49847 50980 501 + . . scaffold950 GLEAN mRNA 45484 50998 0.326384 + . ID=CGI_10022918; scaffold21 WUBlastX LTR_Gypsy 10998 13499 499 - . . . . . -1 -1 -1 . . . scaffold38056 WUBlastX LINE_RTE-X 46139 46633 230 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 404153 404611 323 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 404975 405304 139 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LTR_Gypsy 280343 280768 89 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-BovB 369573 369845 116 + . . . . . -1 -1 -1 . . . C29414 WUBlastX LINE_RTE-X 5115 5966 220 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy 51420 51728 133 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L1-Tx1 297614 297781 77 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L1-Tx1 298268 298402 22 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 313803 314090 35 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 487409 489355 435 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 253669 253857 29 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; C29410 WUBlastX LTR_Gypsy 218 1435 558 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_DIRS 183870 184847 593 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 182540 183070 215 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_L1-Tx1 128333 129271 60 - . . . . . -1 -1 -1 . . . scaffold1033 WUBlastX LINE_RTE-BovB 15757 17232 601 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 151351 151482 48 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 152092 152310 89 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_Sola 135567 135854 123 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_Sola 136772 137383 220 + . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Pao 62076 63305 210 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LTR_Pao 272469 272657 144 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LTR_Pao 273295 273462 160 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_L2 169400 169756 182 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 302568 303860 516 + . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX LTR_Gypsy 75046 75999 679 - . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy 66788 67033 43 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold626 WUBlastX LTR_Gypsy 290549 290782 73 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 291087 291365 79 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 291593 291961 102 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 292091 292369 141 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 293014 293385 140 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1 89674 89751 21 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 129637 130680 576 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-X 424432 424596 43 - . . . . . -1 -1 -1 . . . scaffold1334 WUBlastX LINE_Penelope 7590 8843 437 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold1754 WUBlastX LTR_Gypsy 218750 220096 138 + . . scaffold1754 GLEAN mRNA 216741 233286 0.492638 + . ID=CGI_10009584; scaffold1821 WUBlastX LINE_RTE-BovB 171908 172567 441 + . . scaffold1821 GLEAN mRNA 167929 177659 0.681651 - . ID=CGI_10011291; scaffold1497 WUBlastX LINE_RTE-X 39727 40815 318 - . . scaffold1497 GLEAN mRNA 38658 42952 0.927373 + . ID=CGI_10006963; scaffold1497 WUBlastX LINE_RTE-X 40766 41113 204 - . . scaffold1497 GLEAN mRNA 38658 42952 0.927373 + . ID=CGI_10006963; scaffold86 WUBlastX LINE_RTE-X 1622588 1623169 337 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Pao 1496828 1496908 26 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 699761 700039 22 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 123252 123599 33 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_Harbinger 179058 179249 164 - . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_L1-Tx1 36859 37839 448 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_L1 103554 103658 50 - . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_RTE-X 325090 325425 63 + . . scaffold1579 GLEAN mRNA 320598 331843 0.999956 + . ID=CGI_10016869; scaffold601 WUBlastX LINE_RTE-BovB 1145830 1146489 265 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LINE_L1-Tx1 6213 6542 25 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy 49476 50381 192 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy 51131 51283 60 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX RC_Helitron 356243 356743 287 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX RC_Helitron 357032 357394 234 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_DIRS 140864 141538 461 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_DIRS 141531 141869 255 + . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LTR_Gypsy 10626 12242 689 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Gypsy 220108 220521 23 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L1 49593 49766 31 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L1 52431 52634 50 + . . . . . -1 -1 -1 . . . scaffold42924 WUBlastX LINE_L1-Tx1 39629 40861 647 - . . scaffold42924 GLEAN mRNA 34345 67833 0.434676 - . ID=CGI_10008185; scaffold425 WUBlastX LTR_Gypsy 67022 67543 333 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 140697 141023 181 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy 42119 43093 363 + . . . . . -1 -1 -1 . . . scaffold42776 WUBlastX LINE_RTE-X 188162 188932 175 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 11738 12730 299 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; C34406 WUBlastX LTR_Pao 10650 10871 92 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 11222 11656 155 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Pao 217442 219064 712 + . . scaffold1448 GLEAN mRNA 205659 222787 0.97529 + . ID=CGI_10011856; scaffold6 WUBlastX LINE_L1-Tx1 197556 197735 66 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 197725 198762 251 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 198954 199322 74 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 199415 199501 23 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold1423 WUBlastX LTR_DIRS 269779 270024 67 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 270189 270365 122 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 270358 270636 209 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 270639 270860 107 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 270989 271141 43 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 271141 271479 179 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1-Tx1 156938 157423 272 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1-Tx1 157871 159055 438 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_RTE-X 136957 137796 53 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1 321823 321957 85 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 198756 200033 527 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 200041 200256 148 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_IS4EU 1157473 1157916 405 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1157925 1158461 236 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1158658 1158930 111 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; C34218 WUBlastX RC_Helitron 1 1503 761 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L1-Tx1 483695 484015 219 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1-Tx1 484036 484575 183 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1-Tx1 484649 485137 40 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold177 WUBlastX LINE_Penelope 116237 116854 336 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 1041466 1041843 223 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold35346 WUBlastX DNA_Maverick 20830 21177 126 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy-Troyk 528125 528409 108 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_L1-Tx1 28532 29191 103 - . . . . . -1 -1 -1 . . . C31724 WUBlastX LTR_Gypsy-Cigr 2516 4255 644 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 1026460 1027377 205 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_DIRS 20099 20239 46 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_DIRS 20292 21914 606 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 85191 85436 57 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 614337 615536 543 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_RTE-X 381934 383508 634 + . . scaffold622 GLEAN mRNA 378451 385431 0.999351 + . ID=CGI_10018213; scaffold43538 WUBlastX LINE_RTE-X 105475 107073 651 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_DIRS 137039 137332 198 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_DIRS 137325 138299 359 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_DIRS 138329 138541 51 + . . . . . -1 -1 -1 . . . scaffold1401 WUBlastX LINE_RTE-X 4430 4639 38 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold632 WUBlastX LINE_RTE-X 274500 274961 140 + . . scaffold632 GLEAN mRNA 271859 278767 0.999129 + . ID=CGI_10018450; scaffold315 WUBlastX DNA_Harbinger 427660 427821 121 + . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold204 WUBlastX LTR_Gypsy 1115558 1116283 195 + . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 148610 148819 108 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LTR_Pao 159958 160380 459 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_DIRS 559091 560161 611 - . . . . . -1 -1 -1 . . . C34122 WUBlastX LTR_Gypsy 12016 12699 268 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 702740 702991 83 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 703015 703155 47 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_CR1-L2 408367 409020 260 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_CR1-L2 409949 410170 184 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_CR1-L2 410745 411164 91 - . . . . . -1 -1 -1 . . . C29188 WUBlastX LTR_Gypsy 3946 5517 433 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Gypsy 648880 649143 57 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 242088 242207 54 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Ngaro 618123 618356 95 - . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX DNA_IS4EU 41499 42554 615 + . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX DNA_IS4EU 42577 42903 148 + . . . . . -1 -1 -1 . . . scaffold36118 WUBlastX LINE_RTE-X 7314 7517 92 + . . . . . -1 -1 -1 . . . scaffold36748 WUBlastX LINE_RTE-X 15994 17730 658 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_DIRS 511905 512156 61 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold433 WUBlastX DNA_P 407836 408825 565 - . . scaffold433 GLEAN mRNA 407360 429733 0.877924 + . ID=CGI_10027068; scaffold43244 WUBlastX LINE_RTE-X 56119 56313 136 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_Sola 487740 487958 102 - . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX DNA_En-Spm 366445 367881 855 - . . scaffold43932 GLEAN mRNA 361197 374116 0.888376 - . ID=CGI_10014131; scaffold557 WUBlastX LINE_L1-Tx1 401993 402940 533 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_L1-Tx1 402925 403446 210 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_L1-Tx1 403446 403691 50 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold712 WUBlastX LINE_RTE-X 399888 400043 53 - . . . . . -1 -1 -1 . . . scaffold32546 WUBlastX LINE_L1-Tx1 4848 5627 32 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 319131 319931 375 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_L1-Tx1 131862 132206 151 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_L2 471203 472234 488 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_L2 472215 472661 304 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 708631 709287 264 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 710172 710798 113 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 83018 83617 192 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 83605 83859 98 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_Academ 109396 109980 305 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 111048 111863 388 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold39758 WUBlastX LINE_RTE-BovB 59772 60683 303 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 62305 62484 131 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 62484 62645 103 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 62903 63028 29 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 63046 63252 37 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold1599 WUBlastX LINE_L1-Tx1 596424 597062 163 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 597127 598479 368 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX RC_Helitron 1298422 1299174 89 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L1-Tx1 98509 100500 803 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_CR1 109511 109969 60 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_hAT-Tip100 2655 2831 64 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_hAT 38153 38347 62 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LTR_Pao 86177 86344 66 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Pao 553608 553700 41 - . . scaffold192 GLEAN mRNA 531371 556893 0.543544 + . ID=CGI_10023721; scaffold592 WUBlastX LTR_Copia 247838 248062 62 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_L2 472444 472845 62 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_CR1-L2 882015 882254 32 + . . scaffold1589 GLEAN mRNA 876164 888401 0.863209 - . ID=CGI_10024131; scaffold540 WUBlastX LINE_L2 212354 212491 75 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_CR1-L2 58766 58981 25 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_CR1 368121 368495 81 + . . . . . -1 -1 -1 . . . C32318 WUBlastX LINE_L2 7551 7919 63 - . . C32318 GLEAN mRNA 2480 10983 0.999998 + . ID=CGI_10000883; C33306 WUBlastX DNA_En-Spm 11733 11852 39 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 82245 82439 28 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Gypsy-Cigr 660550 660948 62 - . . scaffold226 GLEAN mRNA 638426 687523 0.559216 + . ID=CGI_10025370; scaffold713 WUBlastX LTR_Gypsy 3224 3385 78 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 18365 18484 53 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 18481 18720 41 + . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LTR_Ngaro 99599 99700 24 - . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LTR_DIRS 326300 326362 33 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX DNA_Crypton 276281 276541 57 + . . . . . -1 -1 -1 . . . scaffold41008 WUBlastX DNA_Crypton 73813 74196 78 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_Crypton 481487 481765 71 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L2 413517 413696 49 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L2 58044 58565 45 - . . . . . -1 -1 -1 . . . C22710 WUBlastX LTR_DIRS 333 467 43 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Ngaro 87262 87378 72 - . . scaffold1673 GLEAN mRNA 58935 108305 0.828275 + . ID=CGI_10013571; scaffold424 WUBlastX LTR_Gypsy 69110 69370 66 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Gypsy 753218 753391 101 + . . . . . -1 -1 -1 . . . C27890 WUBlastX LTR_Gypsy 3390 3590 42 - . . . . . -1 -1 -1 . . . scaffold1177 WUBlastX LTR_Gypsy 36851 37171 66 + . . . . . -1 -1 -1 . . . C24304 WUBlastX RC_Helitron 1515 1685 90 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX RC_Helitron 159839 160090 51 + . . scaffold43878 GLEAN mRNA 158446 163606 0.593391 + . ID=CGI_10013720; scaffold43878 WUBlastX RC_Helitron 161026 161112 28 + . . scaffold43878 GLEAN mRNA 158446 163606 0.593391 + . ID=CGI_10013720; scaffold40010 WUBlastX DNA_Helitron 38197 38574 44 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_Helitron 51749 52126 74 - . . . . . -1 -1 -1 . . . scaffold1892 WUBlastX DNA_hAT-Ac 32923 33015 98 + . . scaffold1892 GLEAN mRNA 30429 33530 1 - . ID=CGI_10011305; scaffold128 WUBlastX DNA_IS4EU 60752 60892 58 - . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold1715 WUBlastX DNA_IS4EU 427905 428045 61 - . . scaffold1715 GLEAN mRNA 426914 428141 0.999981 - . ID=CGI_10019675; scaffold40606 WUBlastX DNA_IS4EU 38293 38643 73 + . . scaffold40606 GLEAN mRNA 38314 38649 0.999372 + . ID=CGI_10004279; scaffold829 WUBlastX LINE_Jockey 530471 530668 25 - . . scaffold829 GLEAN mRNA 525665 533240 0.999107 - . ID=CGI_10021149; scaffold1737 WUBlastX LINE_Jockey 427971 428066 25 + . . . . . -1 -1 -1 . . . C28808 WUBlastX LTR_Gypsy 2824 3186 61 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LTR_Gypsy 196819 197097 79 + . . scaffold1730 GLEAN mRNA 195851 199333 0.999676 + . ID=CGI_10012260; scaffold1533 WUBlastX DNA_Harbinger 94262 94432 78 + . . scaffold1533 GLEAN mRNA 91991 98571 1 + . ID=CGI_10012868; scaffold43696 WUBlastX DNA_Harbinger 24202 24279 37 - . . . . . -1 -1 -1 . . . C33534 WUBlastX LINE_L1 9447 10277 50 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy 18137 18196 26 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_L1 156163 156414 70 + . . . . . -1 -1 -1 . . . scaffold34780 WUBlastX LINE_L1-Tx1 20647 20736 39 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_L1 26529 27269 33 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_L1 28230 28406 28 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold1004 WUBlastX LINE_L1 225032 225100 32 - . . . . . -1 -1 -1 . . . scaffold38306 WUBlastX LINE_L1 6325 6369 31 + . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold1345 WUBlastX LINE_L1 273212 273322 25 - . . . . . -1 -1 -1 . . . scaffold1399 WUBlastX LINE_L1 33397 33723 24 - . . scaffold1399 GLEAN mRNA 16276 39140 0.996608 + . ID=CGI_10007047; scaffold42128 WUBlastX LINE_Penelope 73561 73800 41 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_Penelope 112924 113115 55 - . . scaffold1885 GLEAN mRNA 111510 119560 0.999552 - . ID=CGI_10013898; scaffold621 WUBlastX DNA_TcMar-Fot1 96295 96699 49 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_TcMar-Marin 138389 138577 63 + . . scaffold1149 GLEAN mRNA 123566 144809 0.531581 + . ID=CGI_10023452; scaffold226 WUBlastX DNA_TcMar-Marin 1057662 1057877 65 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold1813 WUBlastX DNA_TcMar-Marin 43310 43480 26 - . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX DNA_TcMar-Marin 43636 43749 32 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-BovB 340629 341150 23 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_RTE-X 631705 632268 64 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 612953 613387 40 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold576 WUBlastX LINE_RTE-X 44280 44915 25 + . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX LINE_RTE-X 108494 108718 38 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_RTE-X 187304 187516 61 + . . scaffold421 GLEAN mRNA 182657 200231 1 + . ID=CGI_10012156; scaffold266 WUBlastX LINE_RTE-X 129872 130093 36 - . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_RTE-X 405878 406081 45 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_RTE-X 386774 387067 36 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_RTE-X 605115 605252 37 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_RTE-X 565508 565738 25 + . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX LTR_ERV1 66350 66406 26 - . . scaffold1454 GLEAN mRNA 63589 73088 0.838276 - . ID=CGI_10004314; scaffold517 WUBlastX DNA_Maverick 47037 47348 61 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 540497 540814 31 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX DNA_Sola 209811 210110 22 - . . scaffold1740 GLEAN mRNA 208281 211238 0.866192 - . ID=CGI_10011449; scaffold1754 WUBlastX DNA_TcMar-Tigge 71701 72105 38 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_TcMar-Marin 459114 459893 42 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_Sola 198495 198932 44 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_TcMar-Marin 346468 346635 80 - . . . . . -1 -1 -1 . . . scaffold40080 WUBlastX LTR_Ngaro 61612 61962 90 - . . scaffold40080 GLEAN mRNA 45524 71991 0.583639 - . ID=CGI_10003845; scaffold1213 WUBlastX LTR_Ngaro 1299645 1300481 60 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Ngaro 310843 311154 32 + . . . . . -1 -1 -1 . . . scaffold37672 WUBlastX LINE_L1-Tx1 31933 32382 37 - . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LINE_L1-Tx1 104879 104992 30 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1-Tx1 321755 322000 47 + . . . . . -1 -1 -1 . . . scaffold1859 WUBlastX DNA_TcMar-Tc1 75759 76019 64 + . . scaffold1859 GLEAN mRNA 61017 77211 0.980385 - . ID=CGI_10007226; scaffold1859 WUBlastX DNA_TcMar-Tc1 75759 76019 64 + . . scaffold1859 GLEAN mRNA 75586 89334 0.863497 + . ID=CGI_10007227; scaffold42946 WUBlastX DNA_TcMar-Tc1 31852 32022 36 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_TcMar-Tc1 526851 527351 62 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Zator 1096521 1096703 52 - . . scaffold77 GLEAN mRNA 1068915 1100683 0.933897 + . ID=CGI_10028019; scaffold40680 WUBlastX LINE_L2 69985 70128 53 - . . . . . -1 -1 -1 . . . scaffold43562 WUBlastX LINE_CR1 167014 167130 33 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167014 167130 33 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold53 WUBlastX LINE_L2 62273 62692 32 - . . scaffold53 GLEAN mRNA 61535 64675 0.999895 - . ID=CGI_10026648; scaffold1188 WUBlastX LINE_CR1-L2 657104 657283 66 - . . scaffold1188 GLEAN mRNA 648038 660238 0.573951 - . ID=CGI_10025493; scaffold156 WUBlastX LINE_CR1-L2 274820 275104 50 + . . scaffold156 GLEAN mRNA 272710 277708 0.558302 - . ID=CGI_10026489; scaffold1121 WUBlastX LINE_L2 23307 23582 81 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LINE_CR1-L2 131789 131863 39 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LINE_L2 217069 217320 45 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_L1 321232 321567 70 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_Penelope 27745 28110 47 + . . scaffold517 GLEAN mRNA 26711 42046 0.883003 + . ID=CGI_10008977; scaffold42124 WUBlastX LTR_Gypsy 65190 65876 61 + . . scaffold42124 GLEAN mRNA 63234 66153 0.99926 + . ID=CGI_10006232; scaffold59 WUBlastX LTR_Gypsy-Cigr 213593 214063 68 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Pao 30712 30822 20 + . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold129 WUBlastX LTR_DIRS 17033 17371 64 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 37034 37555 82 + . . . . . -1 -1 -1 . . . scaffold35860 WUBlastX LTR_Gypsy-Cigr 1258 1584 77 + . . . . . -1 -1 -1 . . . scaffold314 WUBlastX LTR_Gypsy 82454 82501 24 + . . . . . -1 -1 -1 . . . scaffold38256 WUBlastX LTR_Gypsy 3785 3946 82 + . . . . . -1 -1 -1 . . . scaffold38256 WUBlastX LTR_Gypsy 4316 4519 30 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_Harbinger 1276363 1276533 48 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Harbinger 27223 27342 22 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 303169 303426 29 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 275565 275822 29 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_IS4EU 183462 183656 56 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX DNA_Kolobok-IS4 32549 32605 47 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX DNA_Kolobok-IS4 73233 73349 60 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_hAT-Tip100? 137307 137564 48 + . . . . . -1 -1 -1 . . . scaffold41470 WUBlastX DNA_TcMar-ISRm1 105373 106023 60 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LINE_L1-Tx1 216414 216788 29 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold655 WUBlastX LINE_RTE-BovB 312352 312705 60 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold1213 WUBlastX DNA_TcMar-Tc1 464851 465018 28 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LINE_L2 179198 180091 52 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_P 521527 521790 79 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_Penelope 159155 159298 42 + . . . . . -1 -1 -1 . . . scaffold194 WUBlastX LINE_Penelope 92766 93152 66 + . . scaffold194 GLEAN mRNA 88923 103343 0.864939 + . ID=CGI_10011059; scaffold1021 WUBlastX LINE_L1 592474 592782 73 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_L1 268750 269121 45 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok-Hyd 1352917 1353276 46 - . . scaffold86 GLEAN mRNA 1350663 1354624 0.5119 - . ID=CGI_10028203; scaffold86 WUBlastX DNA_Kolobok-Hyd 1353470 1353544 33 - . . scaffold86 GLEAN mRNA 1350663 1354624 0.5119 - . ID=CGI_10028203; scaffold43538 WUBlastX LINE_L1 264660 264773 21 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LINE_L1 97140 97385 62 + . . . . . -1 -1 -1 . . . C22772 WUBlastX LINE_L1 2 217 83 - . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_L1 26037 26147 20 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold485 WUBlastX LINE_L1 874047 874301 82 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_L1 414051 414248 75 - . . . . . -1 -1 -1 . . . scaffold1745 WUBlastX LINE_RTE-X 79271 79618 49 - . . scaffold1745 GLEAN mRNA 77513 92057 0.437746 + . ID=CGI_10005405; scaffold453 WUBlastX DNA_PiggyBac 358128 358226 35 + . . scaffold453 GLEAN mRNA 346906 361240 0.116749 + . ID=CGI_10015050; scaffold44054 WUBlastX DNA_PiggyBac 48294 48401 35 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX DNA_Maverick 459615 459920 67 - . . scaffold44 GLEAN mRNA 452829 480659 0.989884 + . ID=CGI_10016842; scaffold43446 WUBlastX LINE_Rex-Babar 161837 162007 49 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold619 WUBlastX DNA_Maverick 504701 504937 60 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 540823 541038 51 + . . . . . -1 -1 -1 . . . scaffold32550 WUBlastX LINE_RTE-BovB 7250 7402 39 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 607521 607556 26 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_RTE-X 49477 49836 72 - . . . . . -1 -1 -1 . . . scaffold923 WUBlastX LINE_RTE-X 38205 38360 68 + . . . . . -1 -1 -1 . . . scaffold39652 WUBlastX LINE_RTE-X 62324 62743 42 - . . . . . -1 -1 -1 . . . scaffold40564 WUBlastX LINE_RTE-X 29321 29557 22 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX DNA_TcMar-Marin 281061 281135 28 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 80553 80747 27 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX DNA_TcMar-Tc2 83700 83885 56 + . . . . . -1 -1 -1 . . . scaffold41740 WUBlastX DNA_Sola 129202 130029 26 - . . scaffold41740 GLEAN mRNA 128935 130074 0.579463 - . ID=CGI_10005589; scaffold42112 WUBlastX LTR_Copia 63681 63764 20 - . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_L1-Tx1 103382 103858 24 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103858 24 - . . scaffold41954 GLEAN mRNA 103267 126908 0.678183 - . ID=CGI_10005854; scaffold606 WUBlastX LINE_L1-Tx1 200524 200574 25 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_PiggyBac 231664 231798 23 + . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX LINE_L1-Tx1 27434 27730 35 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L1-Tx1 641979 642203 45 - . . scaffold146 GLEAN mRNA 638309 652967 0.499837 - . ID=CGI_10024916; scaffold1327 WUBlastX LINE_L1-Tx1 295735 295821 25 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_L1-Tx1 288369 288548 67 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_Pao 63775 64476 64 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Pao 483327 484067 49 + . . scaffold248 GLEAN mRNA 483285 484196 0.965913 + . ID=CGI_10017238; scaffold42022 WUBlastX LTR_Pao 143065 143766 64 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX DNA_hAT-Tip100 267934 268161 30 - . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy-Cigr 63260 63817 49 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold39096 WUBlastX LTR_Gypsy 51762 52112 56 + . . scaffold39096 GLEAN mRNA 50582 58209 0.813277 + . ID=CGI_10003149; scaffold1619 WUBlastX LINE_L1 9514 9582 26 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1 23630 23698 26 - . . . . . -1 -1 -1 . . . scaffold35332 WUBlastX LINE_CR1 3781 4047 85 - . . scaffold35332 GLEAN mRNA 3775 4032 0.999372 - . ID=CGI_10001469; scaffold419 WUBlastX LINE_CR1 47959 48150 86 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold1885 WUBlastX LINE_CR1-L2 284832 285236 31 + . . . . . -1 -1 -1 . . . scaffold32096 WUBlastX LINE_CR1 1897 2139 73 - . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_L2 53717 53971 76 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold1599 WUBlastX LINE_CR1-L2 809517 809882 100 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_CR1-L2 604051 604233 70 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_CR1-L2 212032 212217 69 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_CR1-L2 469179 469589 43 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 437062 437727 79 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 87981 88757 76 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold1816 WUBlastX LTR_Gypsy 322521 323138 83 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_L2 85514 85774 24 - . . scaffold1149 GLEAN mRNA 84834 85792 0.593391 - . ID=CGI_10023450; scaffold43272 WUBlastX DNA_Crypton 177003 177695 38 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LTR_DIRS 144716 145075 67 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Ngaro 814382 814573 94 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_Kolobok-IS4 406750 407010 51 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_hAT-Ac 57629 57919 108 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX RC_Helitron 477457 477546 66 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX RC_Helitron 46211 46294 25 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold31090 WUBlastX RC_Helitron 3464 3952 80 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Kolobok-IS4 599035 599250 100 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX DNA_IS4EU 210713 211222 109 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Harbinger 14354 14650 59 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 300730 300768 20 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 6419 6475 24 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1 795948 796313 45 - . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1 37748 38245 37 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1 682613 682774 23 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1448 WUBlastX DNA_Kolobok-Hyd 290831 291028 20 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LINE_L1 26894 27058 47 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_Penelope 169518 169667 54 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_TcMar-Tc1 210138 210326 27 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold33832 WUBlastX DNA_P 1125 1364 83 - . . . . . -1 -1 -1 . . . scaffold33924 WUBlastX DNA_MuDR 319 549 48 + . . scaffold33924 GLEAN mRNA 262 597 0.999068 + . ID=CGI_10001172; scaffold37 WUBlastX DNA_MuDR 44945 45244 59 - . . . . . -1 -1 -1 . . . scaffold36118 WUBlastX DNA_MuDR 30808 31116 70 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_TcMar-Marin 339084 339272 82 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX DNA_TcMar-Tc2 18251 18436 36 + . . . . . -1 -1 -1 . . . scaffold718 WUBlastX DNA_TcMar-Fot1 205248 205601 101 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1243546 1243710 111 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_RTE-X 217827 218114 31 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_RTE-X 267295 267333 30 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_RTE-X 267942 268175 47 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LINE_RTE-X 178358 178456 49 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold1699 WUBlastX LINE_RTE-X 17758 17883 69 + . . . . . -1 -1 -1 . . . scaffold837 WUBlastX LINE_RTE-X 81259 81522 73 - . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_RTE-X 21150 21413 72 + . . . . . -1 -1 -1 . . . scaffold37148 WUBlastX LINE_RTE-BovB 29710 29823 41 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold321 WUBlastX LINE_RTE-BovB 513428 513718 48 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_Proto2 90761 90886 41 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_RTE-X 188018 188182 83 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_RTE-X 409055 409393 20 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_En-Spm 614518 614643 74 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold1093 WUBlastX DNA_Sola 424716 425009 65 + . . scaffold1093 GLEAN mRNA 421292 452469 0.981582 + . ID=CGI_10019808; scaffold40752 WUBlastX DNA_TcMar-Fot1 75673 75981 70 - . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX LINE_L1-Tx1 78732 79094 83 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_L1-Tx1 41052 41111 32 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_CR1-L2 64111 64692 98 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LINE_CR1-L2 162075 162368 98 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold41722 WUBlastX LINE_CR1-L2 7429 7509 37 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L2 175309 175824 60 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_CR1-L2 526711 527214 48 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_CR1-L2 142060 142437 40 - . . . . . -1 -1 -1 . . . scaffold35558 WUBlastX LINE_L2 14904 15449 62 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_L2 113022 113717 77 + . . . . . -1 -1 -1 . . . scaffold38848 WUBlastX LINE_L2 28969 29115 28 - . . . . . -1 -1 -1 . . . scaffold38848 WUBlastX LINE_L2 29114 29287 69 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Gypsy-Cigr 53688 54020 89 - . . scaffold1673 GLEAN mRNA 51832 54257 0.720264 - . ID=CGI_10013570; scaffold1173 WUBlastX LTR_Gypsy 115649 116347 52 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1256772 1257470 52 - . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX LTR_Gypsy 156165 156863 51 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy-Cigr 127265 127852 90 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Copia 35810 36535 92 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold211 WUBlastX LINE_CR1 644254 644631 31 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX DNA_hAT 781080 781292 57 + . . scaffold1017 GLEAN mRNA 781053 782982 0.991247 + . ID=CGI_10025027; scaffold1017 WUBlastX DNA_hAT 781882 782343 24 + . . scaffold1017 GLEAN mRNA 781053 782982 0.991247 + . ID=CGI_10025027; scaffold247 WUBlastX DNA_Academ 1159 1773 37 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX DNA_hAT-Ac 187328 187636 81 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1 1269988 1270137 64 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold413 WUBlastX LTR_Ngaro 143385 143561 106 - . . scaffold413 GLEAN mRNA 138311 158515 0.482983 + . ID=CGI_10022796; scaffold501 WUBlastX LTR_Ngaro 928098 928394 96 - . . scaffold501 GLEAN mRNA 928095 928403 0.733495 - . ID=CGI_10027537; scaffold1431 WUBlastX LTR_Gypsy-Cigr 92948 93154 30 - . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX LTR_Gypsy-Cigr 93174 93338 67 - . . . . . -1 -1 -1 . . . scaffold782 WUBlastX LTR_Gypsy-Cigr 81676 82044 105 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-BovB 931698 931934 84 + . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LTR_ERV1 37334 37420 36 + . . scaffold1084 GLEAN mRNA 31266 40802 0.801676 + . ID=CGI_10010075; scaffold43494 WUBlastX LTR_Gypsy 262980 263528 54 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LTR_Gypsy 259424 259633 120 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX LTR_Gypsy 101428 101718 98 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Gypsy 135180 135389 124 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX DNA_Harbinger 53330 53608 88 + . . scaffold42770 GLEAN mRNA 53297 53668 0.618185 + . ID=CGI_10007689; scaffold1077 WUBlastX DNA_Harbinger 501012 501191 42 - . . . . . -1 -1 -1 . . . scaffold34302 WUBlastX DNA_Kolobok-IS4 14370 14639 104 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_IS4EU 204843 205583 100 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX DNA_IS4EU 10605 11345 100 + . . scaffold1004 GLEAN mRNA 10032 23372 0.57306 + . ID=CGI_10020759; scaffold1004 WUBlastX DNA_IS4EU 10605 11345 100 + . . scaffold1004 GLEAN mRNA 10170 36067 1 - . ID=CGI_10020760; scaffold1671 WUBlastX RC_Helitron 227283 227456 98 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold102 WUBlastX DNA_TcMar-Fot1 754777 754935 52 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_TcMar-Marin 773332 773640 120 + . . . . . -1 -1 -1 . . . scaffold50 WUBlastX DNA_TcMar-Tc1 142640 142987 45 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX DNA_TcMar-Tc1 53709 54008 93 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L2 1200789 1201034 47 + . . scaffold601 GLEAN mRNA 1201024 1226827 0.805376 - . ID=CGI_10026861; scaffold36872 WUBlastX LINE_RTE-X 20969 21340 64 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LTR_Ngaro 94245 94421 84 + . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LTR_Ngaro 94420 94473 21 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Penelope 1030932 1031108 24 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1 253214 253387 35 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-BovB 720473 720715 65 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 51394 51546 38 - . . . . . -1 -1 -1 . . . scaffold39220 WUBlastX DNA_Maverick 63216 63821 70 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_RTE-X 189465 189770 27 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 189784 189939 59 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; C29438 WUBlastX LINE_RTE-X 2486 2695 84 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold1329 WUBlastX LINE_RTE-X 260783 261052 22 - . . . . . -1 -1 -1 . . . scaffold33064 WUBlastX LINE_RTE-X 1050 1115 39 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 232752 233096 21 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold1136 WUBlastX LINE_RTE-X 46801 46854 20 + . . scaffold1136 GLEAN mRNA 45613 63125 0.999895 + . ID=CGI_10003080; scaffold1525 WUBlastX LTR_Gypsy 274655 274786 100 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_RTE-X 16790 16984 80 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 46637 46813 69 - . . . . . -1 -1 -1 . . . scaffold41968 WUBlastX LINE_RTE-X 79544 79705 42 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LINE_RTE-X 70507 70731 33 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 146551 146850 92 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_L1-Tx1 32523 32945 68 - . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1084 WUBlastX LINE_L1-Tx1 198142 198477 91 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-Tc1 875189 875431 87 - . . . . . -1 -1 -1 . . . scaffold186 WUBlastX DNA_Merlin 276935 277159 116 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Pao 163540 163623 32 - . . . . . -1 -1 -1 . . . scaffold1460 WUBlastX LINE_RTE-BovB 6046 6258 31 + . . . . . -1 -1 -1 . . . scaffold1566 WUBlastX LTR_Pao 15360 15476 26 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_CR1 414068 414424 57 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_CR1-L2 181647 181694 51 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_CR1 400272 400580 89 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_CR1-L2 262189 262302 21 - . . scaffold1800 GLEAN mRNA 251153 263258 0.999949 - . ID=CGI_10016404; scaffold1710 WUBlastX LTR_Gypsy-Cigr 547774 548274 80 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_DIRS 64967 65230 28 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold1719 WUBlastX LTR_Ngaro 198439 198582 38 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 198627 198857 60 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1322 WUBlastX DNA_Kolobok-IS4 246407 246535 61 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX DNA_IS4EU 32084 32296 79 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX DNA_IS4EU 32507 32605 27 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_TcMar-Marin 112302 112457 92 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold1638 WUBlastX LINE_L1 43457 43561 28 + . . . . . -1 -1 -1 . . . scaffold38974 WUBlastX DNA_Kolobok 20717 20884 53 - . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold150 WUBlastX LINE_Penelope 1602573 1602917 47 - . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX LINE_Penelope 12477 12629 59 + . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX LINE_Penelope 12655 13014 26 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_Penelope 449290 449946 56 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L2 523568 524065 110 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_TcMar-Marin 270456 270797 63 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_RTE-X 185389 185700 45 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 186179 186307 24 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold70 WUBlastX LINE_RTE-X 515514 515606 34 - . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515514 515606 34 - . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold1736 WUBlastX LINE_RTE-X 646019 646276 58 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_RTE-X 14324 14398 32 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_RTE-X 441526 441621 22 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_RTE-X 425450 425653 56 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_RTE-X 171007 171423 49 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-BovB 252230 252511 41 + . . scaffold419 GLEAN mRNA 243081 266501 0.999183 - . ID=CGI_10028337; scaffold1018 WUBlastX DNA_Maverick 493180 493443 95 - . . . . . -1 -1 -1 . . . scaffold527 WUBlastX DNA_Maverick 267470 267754 99 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_PiggyBac 606840 607175 68 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold1081 WUBlastX DNA_Maverick 61466 61747 102 - . . . . . -1 -1 -1 . . . scaffold276 WUBlastX LINE_RTE-X 46442 46777 56 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 193580 193912 54 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold38510 WUBlastX DNA_TcMar-Tc1 20690 20794 24 - . . scaffold38510 GLEAN mRNA 7470 20879 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20690 20794 24 - . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold973 WUBlastX DNA_TcMar-Tc1 392006 392539 58 - . . . . . -1 -1 -1 . . . scaffold1367 WUBlastX DNA_TcMar-Tc1 90608 90706 24 + . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LTR_Gypsy-Cigr 129719 129889 49 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_L1-Tx1 309381 309737 67 - . . scaffold1164 GLEAN mRNA 307222 312085 0.957199 - . ID=CGI_10013011; scaffold43064 WUBlastX LINE_L1-Tx1 184473 184664 24 + . . scaffold43064 GLEAN mRNA 165128 188165 0.499838 + . ID=CGI_10008633; scaffold41732 WUBlastX LINE_L1-Tx1 59573 59674 22 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold790 WUBlastX LINE_L2 240851 241231 72 - . . scaffold790 GLEAN mRNA 239122 257283 0.83657 + . ID=CGI_10013172; scaffold1785 WUBlastX LINE_CR1 544242 544427 62 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold773 WUBlastX LINE_L2 150710 150892 40 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold626 WUBlastX LINE_CR1-L2 332762 333193 41 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX LINE_CR1 278029 278580 31 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_Gypsy-Cigr 36322 36621 71 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Copia 112000 112194 32 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Copia 32378 32596 21 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_hAT-Tip100 207795 208229 98 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_hAT 863449 864837 26 - . . scaffold168 GLEAN mRNA 863089 864738 1 - . ID=CGI_10025616; scaffold288 WUBlastX LTR_Ngaro 50262 50429 102 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 175477 176370 129 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold142 WUBlastX DNA_Harbinger 924717 924857 44 - . . . . . -1 -1 -1 . . . scaffold1672 WUBlastX LTR_Gypsy 57713 57772 20 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold43932 WUBlastX DNA_TcMar-Tc2 192630 192917 40 + . . scaffold43932 GLEAN mRNA 184217 200506 0.993526 + . ID=CGI_10014122; scaffold818 WUBlastX DNA_TcMar-Tc1 286337 286651 86 - . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX DNA_TcMar-m44 24488 24685 83 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_TcMar-Fot1 422694 422945 96 + . . . . . -1 -1 -1 . . . scaffold21978 WUBlastX LINE_L1 1505 1570 33 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_L1-Tx1 153447 153722 35 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_L1-Tx1 153704 153844 75 + . . . . . -1 -1 -1 . . . scaffold36928 WUBlastX LINE_L1 33414 33749 33 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1 190207 190596 57 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold36794 WUBlastX DNA_Maverick 37022 37144 48 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_PiggyBac 727314 727454 50 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold546 WUBlastX LINE_L2 144432 145430 29 + . . scaffold546 GLEAN mRNA 136572 153074 0.999871 - . ID=CGI_10020995; scaffold606 WUBlastX LINE_R1 198180 198857 59 + . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX LINE_RTE-BovB 46449 46841 97 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_RTE-X 300871 301257 78 - . . . . . -1 -1 -1 . . . scaffold37154 WUBlastX LINE_RTE-X 736 1068 73 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_RTE-X 188290 188448 67 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold370 WUBlastX LINE_RTE-X 188534 188707 25 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold286 WUBlastX LINE_RTE-X 199506 199817 41 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc1 268613 268732 43 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Ngaro 127575 127934 46 - . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LINE_L1-Tx1 33303 33479 37 - . . . . . -1 -1 -1 . . . scaffold1639 WUBlastX DNA_TcMar-Tc1 37584 37826 120 + . . scaffold1639 GLEAN mRNA 27466 42582 0.863535 + . ID=CGI_10005437; scaffold368 WUBlastX LTR_Pao 418804 419049 25 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Copia 307041 307376 28 + . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 41214 41321 26 - . . . . . -1 -1 -1 . . . scaffold32160 WUBlastX LTR_Pao 7 114 36 + . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Pao 49985 50182 141 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L2 1040007 1040159 28 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L2 1040300 1040680 40 - . . . . . -1 -1 -1 . . . C35794 WUBlastX LINE_CR1 12935 13183 64 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L2 733780 734247 111 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L2 240671 241042 130 - . . scaffold790 GLEAN mRNA 239122 257283 0.83657 + . ID=CGI_10013172; scaffold1244 WUBlastX LTR_Gypsy 127405 128175 110 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; C35282 WUBlastX LTR_Gypsy 2009 2557 92 + . . C35282 GLEAN mRNA 1142 2704 0.999228 + . ID=CGI_10001456; scaffold38058 WUBlastX LTR_Gypsy 5497 5940 31 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold1698 WUBlastX LTR_DIRS? 372623 372832 35 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_DIRS? 373017 373124 28 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LTR_Ngaro 130592 130753 70 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_L1-Tx1 217122 217904 102 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Kolobok 295830 296171 101 - . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold43494 WUBlastX DNA_Harbinger 240562 240894 101 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LTR_Gypsy 77073 77288 124 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX DNA_Kolobok-IS4 277458 277571 33 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_Kolobok-IS4 553376 553684 72 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX RC_Helitron 213966 214325 122 - . . scaffold43244 GLEAN mRNA 204787 215070 0.744209 - . ID=CGI_10009617; scaffold593 WUBlastX DNA_hAT-Blackja 542506 542910 55 - . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 26233 26649 96 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold412 WUBlastX LINE_I 381645 382244 71 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-Marin 95754 95831 28 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-Marin 96248 96592 99 + . . . . . -1 -1 -1 . . . scaffold1644 WUBlastX LINE_RTE-X 47447 47929 69 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-BovB 9848 10021 23 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-X 1065821 1066168 50 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_RTE-BovB 108370 108519 37 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LTR_Gypsy 253833 254102 34 - . . . . . -1 -1 -1 . . . scaffold39482 WUBlastX DNA_Maverick 14085 14315 132 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_RTE-X 147739 148152 85 - . . . . . -1 -1 -1 . . . scaffold311 WUBlastX LINE_RTE-X 7501 7575 37 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 209342 209569 35 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 209659 209790 43 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_RTE-X 173078 173272 28 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_Sola 222106 222486 118 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_L1-Tx1 309381 309674 97 - . . scaffold1164 GLEAN mRNA 307222 312085 0.957199 - . ID=CGI_10013011; scaffold1350 WUBlastX LINE_L1-Tx1 149035 149661 23 + . . scaffold1350 GLEAN mRNA 148503 161084 1 - . ID=CGI_10017301; scaffold1605 WUBlastX LINE_L1-Tx1 598340 598666 118 + . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LINE_L1-Tx1 45936 46220 62 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1-Tx1 76628 77224 39 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_CR1 467352 467519 49 + . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_L2 263027 263785 98 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 132799 133071 116 - . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LTR_Ngaro 133548 133826 132 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_DIRS 13057 13827 50 + . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_Gypsy 49869 50138 103 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold40140 WUBlastX LTR_Gypsy 39276 40193 100 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LTR_Gypsy 454083 454664 114 + . . scaffold547 GLEAN mRNA 453649 455262 0.872777 + . ID=CGI_10018858; scaffold1426 WUBlastX DNA_hAT-Tip100 5871 6380 61 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold38854 WUBlastX DNA_Harbinger 19353 19715 102 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold172 WUBlastX DNA_TcMar-Marin 180769 181245 77 - . . scaffold172 GLEAN mRNA 172027 190586 0.544386 + . ID=CGI_10013522; scaffold626 WUBlastX LTR_Ngaro 105743 106264 119 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_L1 477824 478192 112 + . . . . . -1 -1 -1 . . . scaffold42740 WUBlastX DNA_IS4EU 8545 8721 50 - . . . . . -1 -1 -1 . . . scaffold42740 WUBlastX DNA_IS4EU 8875 8946 42 - . . . . . -1 -1 -1 . . . scaffold42740 WUBlastX DNA_IS4EU 9466 9570 50 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_ERV1 442247 443101 130 - . . . . . -1 -1 -1 . . . scaffold251 WUBlastX LINE_RTE-X 15248 15745 41 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 46945 47331 72 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 97802 98188 73 + . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_RTE-X 135219 135317 55 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 1066479 1066865 104 - . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_L1-Tx1 11980 12648 76 - . . scaffold1117 GLEAN mRNA 11683 14467 0.793024 + . ID=CGI_10002970; scaffold739 WUBlastX DNA_TcMar-Tc1 81567 81791 27 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_TcMar-Tc1 664 1374 60 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX DNA_TcMar-Tc1 139360 139677 60 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_L2 127127 127654 97 + . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX DNA_hAT 731702 732067 122 - . . scaffold1605 GLEAN mRNA 696278 739510 0.673314 - . ID=CGI_10023387; scaffold361 WUBlastX LINE_CR1-L2 49211 49774 59 - . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L2 147061 147360 87 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_L2 107263 107616 48 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_CR1-L2 312578 313159 36 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 294404 294574 23 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold257 WUBlastX LTR_DIRS 1604480 1604971 38 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold448 WUBlastX LTR_DIRS? 27391 27705 135 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold70 WUBlastX LTR_Ngaro 317803 318216 42 + . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LTR_Ngaro 126730 127002 136 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_DIRS 886947 887282 130 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_L2 25619 25807 38 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold79 WUBlastX RC_Helitron 221755 222372 126 + . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LTR_Gypsy 29292 29912 30 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX DNA_Harbinger 207804 208109 121 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; C35840 WUBlastX DNA_Harbinger 712 825 46 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold773 WUBlastX DNA_Harbinger 26065 26241 96 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_Harbinger 26235 26336 35 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX DNA_Kolobok 3420 3923 116 - . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX DNA_Kolobok 10817 10957 38 + . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 10817 10957 38 + . . scaffold34942 GLEAN mRNA 10169 10981 1 + . ID=CGI_10001380; scaffold38272 WUBlastX LINE_L1 39386 39784 44 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold126 WUBlastX DNA_MuDR 579734 580051 64 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold1374 WUBlastX LINE_RTE-X 35802 36191 85 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-BovB 176428 176658 27 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 408762 409052 137 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 616938 617144 52 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Tc1 28617 28769 50 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold70 WUBlastX LINE_L2 340948 341616 113 + . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L2 19759 19842 20 - . . . . . -1 -1 -1 . . . C28090 WUBlastX LINE_L2 544 1260 100 - . . . . . -1 -1 -1 . . . scaffold1867 WUBlastX LINE_CR1-L2 44783 44890 53 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_CR1-L2 868074 868223 30 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX DNA_hAT-Tip100 75669 75926 167 + . . . . . -1 -1 -1 . . . scaffold36802 WUBlastX DNA_Academ 3538 3729 63 + . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_Tad1? 108226 108909 66 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold449 WUBlastX LINE_L1 145969 146160 52 - . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX LINE_L2 97037 97561 151 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LTR_DIRS 120843 121241 135 + . . . . . -1 -1 -1 . . . scaffold38736 WUBlastX LTR_Gypsy 252 995 138 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Gypsy 274344 274655 32 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Gypsy 274789 275496 49 + . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy 117925 118113 56 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 546346 547086 154 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_Penelope 438214 438780 140 + . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX DNA_MuDR 60405 60719 127 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LINE_Penelope 111962 112390 101 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1 87641 87787 46 + . . . . . -1 -1 -1 . . . scaffold1348 WUBlastX LINE_L1 177378 177953 138 + . . . . . -1 -1 -1 . . . scaffold397 WUBlastX LINE_L1 24240 24665 103 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_IS4EU 788672 788776 41 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_IS4EU 789313 789384 41 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1 1196796 1196924 21 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_RTE-X 481308 481637 92 - . . . . . -1 -1 -1 . . . scaffold1503 WUBlastX LINE_RTE-BovB 227255 227455 123 + . . scaffold1503 GLEAN mRNA 219416 230128 0.776193 - . ID=CGI_10009541; scaffold647 WUBlastX LINE_RTE-X 106769 107224 99 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_RTE-X 245952 246284 96 - . . scaffold266 GLEAN mRNA 236877 257451 0.649405 - . ID=CGI_10013355; scaffold557 WUBlastX LINE_RTE-X 358950 359282 110 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_RTE-X 456496 456615 27 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc1 222421 222519 34 - . . scaffold1024 GLEAN mRNA 191784 246938 0.99909 + . ID=CGI_10028528; scaffold1066 WUBlastX LTR_Gypsy 170263 170712 190 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold1605 WUBlastX LINE_L1-Tx1 827245 827412 47 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 269834 269938 27 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 270174 270359 118 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 270337 270777 272 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy 80470 80832 65 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold162 WUBlastX LTR_Gypsy 270808 271023 127 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold301 WUBlastX LTR_Gypsy 870801 870932 24 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 100703 101236 187 + . . . . . -1 -1 -1 . . . scaffold38162 WUBlastX LTR_Gypsy 33218 33472 48 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 562385 564151 764 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_CR1-L2 17987 18955 606 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold274 WUBlastX LTR_Gypsy 120699 121241 268 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120699 121241 268 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold1700 WUBlastX DNA_Academ 9852 10031 43 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 10028 11290 357 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 11248 11412 58 + . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX DNA_Academ 11489 11920 201 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_DIRS 63742 63855 58 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 63855 64793 455 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 64770 64916 39 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 64913 65188 139 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 65337 65849 189 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold1396 WUBlastX LTR_Gypsy 13996 14331 156 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Pao 32423 32611 44 - . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_L1 75563 75724 61 - . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX DNA_hAT-Tip100 27713 27790 32 - . . . . . -1 -1 -1 . . . scaffold1566 WUBlastX LTR_Pao 15481 15657 130 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_CR1-L2 325698 325769 34 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 39504 39599 42 + . . . . . -1 -1 -1 . . . scaffold32094 WUBlastX LTR_Ngaro 5448 5984 59 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX DNA_Academ 493629 493895 62 - . . scaffold576 GLEAN mRNA 477083 499129 0.277546 - . ID=CGI_10018784; scaffold576 WUBlastX DNA_Academ 493918 494013 30 - . . scaffold576 GLEAN mRNA 477083 499129 0.277546 - . ID=CGI_10018784; scaffold667 WUBlastX RC_Helitron 88499 89131 49 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_I 582843 582884 23 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_L1-Tx1 295421 295663 91 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_P 800077 800472 68 - . . . . . -1 -1 -1 . . . C22930 WUBlastX LTR_Gypsy 49 198 110 - . . . . . -1 -1 -1 . . . C22930 WUBlastX LTR_Gypsy 189 341 77 - . . . . . -1 -1 -1 . . . scaffold186 WUBlastX DNA_Merlin 277074 277280 83 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-BovB 632592 632927 24 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 734374 734751 144 - . . scaffold1360 GLEAN mRNA 732870 739512 0.95405 + . ID=CGI_10022670; scaffold343 WUBlastX LINE_RTE-BovB 646743 646778 22 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold1671 WUBlastX LINE_RTE-BovB 310559 311035 93 - . . scaffold1671 GLEAN mRNA 303116 311549 0.243132 + . ID=CGI_10015154; scaffold1705 WUBlastX LINE_RTE-BovB 177890 178147 79 + . . scaffold1705 GLEAN mRNA 168554 181759 0.810172 - . ID=CGI_10007474; scaffold43634 WUBlastX DNA_Maverick 71539 71787 97 + . . scaffold43634 GLEAN mRNA 56957 73985 0.67193 + . ID=CGI_10011531; scaffold43634 WUBlastX DNA_Maverick 71832 71984 69 + . . scaffold43634 GLEAN mRNA 56957 73985 0.67193 + . ID=CGI_10011531; scaffold41598 WUBlastX DNA_PiggyBac 66865 67101 51 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold1009 WUBlastX LINE_RTE-X 1225837 1226280 93 - . . scaffold1009 GLEAN mRNA 1197147 1238817 0.350484 + . ID=CGI_10028788; scaffold1857 WUBlastX DNA_Sola 3684 3974 122 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX DNA_Sola 15544 15834 122 + . . scaffold1869 GLEAN mRNA 8009 37015 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15544 15834 122 + . . scaffold1869 GLEAN mRNA 11164 16956 0.999984 + . ID=CGI_10009012; scaffold1337 WUBlastX DNA_TcMar-Tc1 228119 228457 60 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_TcMar-Tc1 306756 306863 20 + . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX DNA_TcMar-Tc1 141410 141532 48 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_TcMar-Tc1 107 259 46 - . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX DNA_hAT-Tip100 2304 3287 147 - . . scaffold1597 GLEAN mRNA 296 3638 1 - . ID=CGI_10011762; scaffold1409 WUBlastX LINE_RTE-BovB 110860 111558 891 - . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_RTE-BovB 111566 111862 131 - . . . . . -1 -1 -1 . . . scaffold42804 WUBlastX LINE_L2 184017 185585 931 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Ngaro 1182780 1183076 222 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Gypsy 141631 143955 245 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 612143 612781 382 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_DIRS 219942 220568 100 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_DIRS 220522 222255 764 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Pao 255397 255708 100 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_CR1-L2 1223 2065 644 + . . . . . -1 -1 -1 . . . C33952 WUBlastX RC_Helitron 3167 4066 42 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Gypsy 210646 210921 64 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1138 WUBlastX DNA_En-Spm 275017 275997 644 + . . scaffold1138 GLEAN mRNA 273468 292780 0.221988 + . ID=CGI_10015375; scaffold1138 WUBlastX DNA_En-Spm 275952 276137 61 + . . scaffold1138 GLEAN mRNA 273468 292780 0.221988 + . ID=CGI_10015375; scaffold412 WUBlastX LTR_Gypsy 418677 419462 349 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy 419734 419916 148 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy 419915 421450 682 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy-Cigr 97996 99936 193 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 467812 469287 1058 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Pao 357924 358244 141 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 562113 562427 46 - . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1 26202 26267 27 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_CR1-L2 670070 670255 109 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold1845 WUBlastX LINE_CR1 226025 226141 21 - . . . . . -1 -1 -1 . . . C27444 WUBlastX LINE_RTE-BovB 2236 2673 61 - . . . . . -1 -1 -1 . . . C21376 WUBlastX LTR_Gypsy 65 403 92 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1041750 1041911 107 + . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LTR_Gypsy 12230 12841 170 + . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold419 WUBlastX DNA_Crypton 394829 395413 110 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Crypton 395764 396168 59 + . . . . . -1 -1 -1 . . . scaffold31032 WUBlastX DNA_Harbinger 7889 8008 32 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_Gypsy 449961 450677 93 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold37712 WUBlastX LTR_Gypsy 35907 36056 22 + . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold589 WUBlastX DNA_IS4EU 50589 51284 77 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX DNA_IS4EU 217320 218186 100 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold1403 WUBlastX DNA_IS4EU 568661 568723 35 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_I-Nimb 438390 439298 82 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LTR_Ngaro 697877 698170 88 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_Penelope 377454 378461 21 - . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_RTE-X 86189 86617 50 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold97 WUBlastX LTR_DIRS 27014 27574 167 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_TcMar-Tc1 272915 273118 77 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_TcMar-Marin 793120 793338 107 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy-Troyk 321051 321107 50 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy-Troyk 321104 321367 142 - . . . . . -1 -1 -1 . . . scaffold39158 WUBlastX LTR_Gypsy-Troyk 65841 65936 50 - . . . . . -1 -1 -1 . . . scaffold39158 WUBlastX LTR_Gypsy-Troyk 65938 66117 126 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_L2 43948 44157 42 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_L2 44138 45211 644 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_L2 45205 45432 144 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX DNA_En-Spm 113776 115821 1029 - . . scaffold498 GLEAN mRNA 111798 119002 0.999546 - . ID=CGI_10012422; scaffold404 WUBlastX LTR_Gypsy 25236 25463 20 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 24499 25701 277 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_L2 577749 579317 1008 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_DIRS 541156 541857 412 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 133980 134405 85 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold1104 WUBlastX LINE_RTE-X 165090 165974 403 + . . scaffold1104 GLEAN mRNA 162897 187197 0.499418 + . ID=CGI_10020361; C31738 WUBlastX LINE_L1-Tx1 4340 4831 169 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LINE_CR1 57424 57669 57 + . . . . . -1 -1 -1 . . . C34458 WUBlastX LINE_CR1-L2 109 276 33 - . . . . . -1 -1 -1 . . . C34458 WUBlastX LINE_CR1-L2 284 565 110 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_CR1-L2 528482 528610 20 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 81009 81623 70 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LINE_L1 141628 141855 53 + . . . . . -1 -1 -1 . . . scaffold43772 WUBlastX LTR_Ngaro 53199 54272 53 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Ngaro 20361 21434 56 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX DNA_Crypton 491524 491802 118 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX DNA_Crypton 492454 493047 72 + . . . . . -1 -1 -1 . . . C16696 WUBlastX LTR_Gypsy 4 342 104 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX DNA_Crypton 426192 426665 85 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX DNA_Crypton 427104 427439 104 + . . scaffold210 GLEAN mRNA 426681 440258 0.999993 - . ID=CGI_10015907; scaffold1244 WUBlastX LTR_ERV1 124432 124518 28 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold1307 WUBlastX DNA_hAT-Tip100 207876 208379 86 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Gypsy 391784 392389 139 + . . . . . -1 -1 -1 . . . scaffold39220 WUBlastX LTR_Gypsy 2062 2346 180 - . . . . . -1 -1 -1 . . . C24942 WUBlastX LTR_Ngaro 1457 1723 184 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 541312 541890 141 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_ERVL 313717 313830 20 + . . . . . -1 -1 -1 . . . scaffold42144 WUBlastX LINE_RTE-X 124336 124779 118 + . . scaffold42144 GLEAN mRNA 104437 125325 0.993907 - . ID=CGI_10006248; scaffold1527 WUBlastX LINE_RTE-X 179142 179459 167 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 11875 11940 22 + . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_DIRS 10838 11011 91 + . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_DIRS 11139 11318 90 + . . . . . -1 -1 -1 . . . scaffold37006 WUBlastX LINE_CR1-L2 31501 33852 831 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold37758 WUBlastX DNA_En-Spm 3575 4024 161 + . . . . . -1 -1 -1 . . . scaffold37758 WUBlastX DNA_En-Spm 3948 5540 926 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 14538 15356 324 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 17081 17527 48 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_Maverick 172887 173165 119 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold1741 WUBlastX RC_Helitron 24727 25635 44 - . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LTR_DIRS 163351 165189 945 - . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LTR_DIRS 165392 166078 134 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LTR_Pao 129567 130256 241 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold40282 WUBlastX LTR_Gypsy 74222 75085 233 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 77290 77700 44 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold1138 WUBlastX LTR_Gypsy 32862 33221 323 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LTR_Gypsy 33203 34537 924 + . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Pao 32094 32480 234 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 634604 635005 43 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 857737 857865 50 + . . . . . -1 -1 -1 . . . scaffold40106 WUBlastX LINE_L2 17082 17414 91 + . . . . . -1 -1 -1 . . . scaffold40106 WUBlastX LINE_L2 17417 17539 46 + . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX LTR_Gypsy-Cigr 82725 82919 96 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LTR_Gypsy-Cigr 254083 254277 106 - . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_ERV1 67151 67840 97 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold43396 WUBlastX LTR_Ngaro 235412 235585 24 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; C27694 WUBlastX RC_Helitron 4188 4889 100 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX RC_Helitron 18773 19210 49 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX DNA_IS4EU 349361 350560 109 - . . scaffold44 GLEAN mRNA 346940 353357 0.748127 - . ID=CGI_10016836; scaffold35866 WUBlastX DNA_IS4EU 8547 9746 109 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_Harbinger 266956 267147 54 - . . scaffold1 GLEAN mRNA 264014 267684 0.995923 + . ID=CGI_10013474; scaffold608 WUBlastX LINE_L1 53661 53822 43 - . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX DNA_PiggyBac 197541 197699 63 + . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_RTE-X 72401 72757 107 - . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_RTE-X 72792 73103 67 - . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_RTE-X 79709 80305 62 + . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_RTE-X 80266 80802 92 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 235674 235760 57 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_L1-Tx1 699478 699846 143 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold315 WUBlastX LTR_Pao 470807 471277 247 - . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LTR_Pao 471263 473236 1004 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 455709 456170 214 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 457724 458218 78 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 458623 458790 34 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 459012 459500 114 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 459497 459757 62 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 459787 460029 92 - . . . . . -1 -1 -1 . . . C36530 WUBlastX DNA_IS 543 1331 1344 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_IS 638421 639209 1344 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LINE_L2 245315 247345 784 - . . scaffold432 GLEAN mRNA 235322 257919 0.999925 + . ID=CGI_10023091; scaffold1546 WUBlastX LTR_DIRS 97381 98304 557 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX LTR_DIRS 98288 99172 232 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Maverick 61623 63572 665 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LTR_Gypsy 35207 37165 1241 - . . scaffold189 GLEAN mRNA 16396 38520 0.48054 + . ID=CGI_10018663; scaffold39268 WUBlastX DNA_En-Spm 49476 50585 441 - . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_En-Spm 50564 51769 819 - . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold100 WUBlastX LTR_Gypsy 826576 826881 264 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 829402 829722 121 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy 77263 79149 969 - . . . . . -1 -1 -1 . . . scaffold40164 WUBlastX LINE_L1-Tx1 35321 36673 201 - . . . . . -1 -1 -1 . . . scaffold40164 WUBlastX LINE_L1-Tx1 36663 38330 703 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 321965 322177 37 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 322336 323670 534 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 323640 325034 499 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LINE_RTE-X 218788 219501 151 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-X 219879 220829 643 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-X 221138 221485 100 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-X 221538 222101 182 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold298 WUBlastX LTR_Gypsy-Cigr 37487 38470 661 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 59953 61374 836 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 4274 4621 94 + . . . . . -1 -1 -1 . . . scaffold40150 WUBlastX LINE_CR1 73006 73125 75 - . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_PiggyBac 23946 24113 79 - . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_PiggyBac 24897 25034 41 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 73847 74188 100 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold141 WUBlastX LTR_Gypsy 131761 132159 203 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 339127 339396 123 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 340172 340420 33 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX DNA_Harbinger 294677 294880 135 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX DNA_Harbinger 295342 295551 32 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 598299 598664 57 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold42402 WUBlastX LTR_Gypsy 20378 20569 52 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 180139 180249 64 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Gypsy 123309 123623 95 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold35406 WUBlastX RC_Helitron 13297 13353 24 + . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold632 WUBlastX LINE_L1-Tx1 149752 150207 174 - . . . . . -1 -1 -1 . . . scaffold41316 WUBlastX LINE_L1 95565 96797 74 + . . . . . -1 -1 -1 . . . scaffold809 WUBlastX LINE_Penelope 82645 82752 27 + . . . . . -1 -1 -1 . . . scaffold809 WUBlastX LINE_Penelope 82862 83131 42 + . . . . . -1 -1 -1 . . . scaffold809 WUBlastX LINE_Penelope 83211 83540 70 + . . . . . -1 -1 -1 . . . scaffold1595 WUBlastX LINE_L2 11731 12336 164 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_L2 229391 230215 123 + . . . . . -1 -1 -1 . . . scaffold616 WUBlastX DNA_PiggyBac 407479 407826 181 - . . scaffold616 GLEAN mRNA 405918 425935 0.924853 - . ID=CGI_10015408; scaffold1869 WUBlastX LINE_RTE-X 62402 63301 54 + . . . . . -1 -1 -1 . . . scaffold1260 WUBlastX DNA_TcMar-Tc2 120357 121193 188 + . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX DNA_TcMar-Tc1 25560 25916 91 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L1-Tx1 252586 253209 132 - . . scaffold113 GLEAN mRNA 246298 256285 1 - . ID=CGI_10021289; scaffold1633 WUBlastX LINE_L1-Tx1 287 547 195 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_Maverick 171846 172484 100 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold301 WUBlastX LINE_RTE-X 557787 558992 536 - . . scaffold301 GLEAN mRNA 557742 558662 0.999999 - . ID=CGI_10026724; scaffold301 WUBlastX LINE_RTE-X 558974 560158 552 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_RTE-X 560524 560781 68 - . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX RC_Helitron 51062 51181 81 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 77619 78050 199 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_CR1 432606 434384 1460 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 229722 230420 62 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_L1-Tx1 208155 210845 1239 + . . scaffold655 GLEAN mRNA 206640 213790 0.998219 + . ID=CGI_10014952; scaffold962 WUBlastX LINE_CR1-L2 748152 748316 24 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold331 WUBlastX DNA_En-Spm 38056 38190 34 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_Harbinger 254873 255052 37 + . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX DNA_IS4EU 282739 282828 64 + . . . . . -1 -1 -1 . . . scaffold1133 WUBlastX DNA_IS4EU 35414 36175 162 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX DNA_Harbinger 575780 576355 194 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX DNA_Harbinger 219955 220350 170 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1 195883 196017 43 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_TcMar-Fot1 253394 254314 178 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LINE_Penelope 413126 413593 181 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX DNA_NOF 482319 483068 181 - . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LINE_RTE-X 75733 75921 41 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold191 WUBlastX LINE_RTE-X 87680 88369 94 + . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_RTE-X 106515 106724 105 + . . . . . -1 -1 -1 . . . scaffold1367 WUBlastX DNA_TcMar-Tc1 90284 90691 174 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy-Cigr 49027 50424 715 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy-Cigr 50786 51838 631 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 283387 284979 922 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy-Troyk 525511 526239 753 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy-Troyk 526235 527149 342 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy-Troyk 527206 527847 248 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy-Troyk 527849 527956 58 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy-Troyk 527958 528125 140 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1-Tx1 843741 844679 447 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1-Tx1 844796 845653 606 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1-Tx1 845788 846573 318 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_RTE-BovB 105256 105570 22 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LTR_Pao 53925 53990 28 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_CR1-L2 851760 852245 202 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_CR1-L2 1610649 1611221 110 + . . scaffold150 GLEAN mRNA 1609311 1613969 0.550073 + . ID=CGI_10028691; scaffold1498 WUBlastX LINE_L2 2101 2577 97 - . . scaffold1498 GLEAN mRNA 115 13249 0.844003 + . ID=CGI_10004755; scaffold1382 WUBlastX LINE_CR1 51337 51645 62 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_CR1 51668 52099 90 + . . . . . -1 -1 -1 . . . C30662 WUBlastX LINE_L2 3706 4233 186 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L2 444509 445024 175 + . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold189 WUBlastX LTR_DIRS 41182 41415 120 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy 214887 215636 196 + . . scaffold1599 GLEAN mRNA 204689 219809 0.999676 - . ID=CGI_10027141; scaffold38458 WUBlastX DNA_Harbinger 52861 53226 123 + . . scaffold38458 GLEAN mRNA 38002 56000 0.84332 + . ID=CGI_10002784; scaffold38458 WUBlastX DNA_Harbinger 53846 53965 107 + . . scaffold38458 GLEAN mRNA 38002 56000 0.84332 + . ID=CGI_10002784; scaffold142 WUBlastX LTR_Gypsy 52366 52587 81 - . . . . . -1 -1 -1 . . . scaffold1653 WUBlastX LINE_L1 6925 7311 72 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Merlin 1034576 1034953 171 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Merlin 1035165 1035305 42 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_NOF 896772 896888 106 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_NOF 896881 897063 108 + . . . . . -1 -1 -1 . . . scaffold1693 WUBlastX DNA_TcMar-Marin 22825 23172 218 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_TcMar-Fot1 400921 401691 235 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_L2 272100 272819 150 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX DNA_Maverick 71449 72240 119 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX DNA_Maverick 234821 235483 194 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Maverick 499224 499583 167 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 122299 122802 112 + . . scaffold128 GLEAN mRNA 119795 124529 0.290216 - . ID=CGI_10021509; scaffold43038 WUBlastX LINE_RTE-X 97316 98347 77 - . . scaffold43038 GLEAN mRNA 85348 101738 0.999351 - . ID=CGI_10008443; scaffold43038 WUBlastX LINE_RTE-X 97316 98347 77 - . . scaffold43038 GLEAN mRNA 95367 105637 0.999027 + . ID=CGI_10008444; scaffold347 WUBlastX LINE_RTE-X 511130 511531 195 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_Sola 533032 533811 106 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_DIRS 148402 148773 69 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX LTR_Pao 114552 114737 20 + . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX LINE_RTE-X 252365 254476 1421 - . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX LINE_RTE-X 254445 254609 28 - . . . . . -1 -1 -1 . . . scaffold31880 WUBlastX LINE_RTE-X 6452 6613 84 - . . . . . -1 -1 -1 . . . scaffold31880 WUBlastX LINE_RTE-X 6621 6764 40 - . . . . . -1 -1 -1 . . . scaffold31880 WUBlastX LINE_RTE-X 6775 7191 130 - . . . . . -1 -1 -1 . . . scaffold31880 WUBlastX LINE_RTE-X 7181 7762 349 - . . . . . -1 -1 -1 . . . scaffold31880 WUBlastX LINE_RTE-X 7747 8607 393 - . . . . . -1 -1 -1 . . . scaffold31880 WUBlastX LINE_RTE-X 8613 9170 189 - . . . . . -1 -1 -1 . . . scaffold31880 WUBlastX LINE_RTE-X 9154 9564 170 - . . . . . -1 -1 -1 . . . scaffold31880 WUBlastX LINE_RTE-X 9578 9736 44 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_L1-Tx1 125972 129706 1263 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy-Cigr 1305680 1305868 91 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy-Cigr 1306394 1307212 527 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 690767 691705 63 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 694313 694636 46 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Maverick 1357963 1358406 322 - . . . . . -1 -1 -1 . . . scaffold569 WUBlastX DNA_Maverick 200088 200363 130 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy-Cigr 612161 612670 500 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 424343 424462 59 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 424908 425084 113 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 558487 558741 49 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold1644 WUBlastX LINE_L2 50441 51238 114 - . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX LINE_L2 80 325 34 + . . . . . -1 -1 -1 . . . C35794 WUBlastX LINE_L2 13174 13575 60 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_CR1-L2 1610649 1611575 48 + . . scaffold150 GLEAN mRNA 1609311 1613969 0.550073 + . ID=CGI_10028691; scaffold1329 WUBlastX LINE_CR1-L2 111533 112063 110 - . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 83738 84370 188 + . . . . . -1 -1 -1 . . . C17650 WUBlastX LTR_Gypsy 2 256 218 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 179807 180136 87 - . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_TcMar-Fot1 246348 246962 218 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX DNA_TcMar-Fot1 219922 220470 217 + . . . . . -1 -1 -1 . . . scaffold38422 WUBlastX DNA_MuDR 1201 1665 175 + . . . . . -1 -1 -1 . . . scaffold38422 WUBlastX DNA_MuDR 1728 2012 43 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX DNA_Maverick 40015 40335 207 - . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Maverick 11059 11256 51 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_PiggyBac 112453 112734 107 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_PiggyBac 114518 114676 63 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_RTE-X 462205 462408 105 - . . scaffold1737 GLEAN mRNA 447854 462520 0.999999 + . ID=CGI_10018255; scaffold1737 WUBlastX LINE_RTE-X 463126 463659 44 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LINE_RTE-BovB 66542 66853 186 - . . scaffold43842 GLEAN mRNA 64643 69888 1 + . ID=CGI_10013097; scaffold1131 WUBlastX LINE_RTE-X 17227 17718 187 - . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_L1-Tx1 498858 499499 85 + . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Gypsy 107748 108893 851 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L1 591430 591558 59 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 1024005 1024592 297 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 1024507 1025214 366 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 1025358 1026500 763 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 1026460 1026909 261 - . . . . . -1 -1 -1 . . . C28006 WUBlastX LINE_CR1-L2 3216 3524 66 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_CR1 399906 400058 70 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy 342300 342560 115 - . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Ngaro 15248 15529 154 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Gypsy 387242 387649 258 - . . . . . -1 -1 -1 . . . scaffold35 WUBlastX DNA_IS4EU 1407 1577 105 - . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L1 71936 72502 97 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold1714 WUBlastX LINE_L1-Tx1 129949 130878 95 - . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX LINE_RTE-X 100265 100915 126 - . . . . . -1 -1 -1 . . . scaffold65 WUBlastX LINE_RTE-X 140671 141270 119 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX LINE_RTE-X 440371 441387 87 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_Rex-Babar 1078501 1078641 60 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Ngaro 137922 138119 73 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Ngaro 138524 138610 24 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Ngaro 138995 139228 36 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Pao 350270 350500 78 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LTR_Gypsy 171240 174056 1856 + . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LTR_Gypsy-Cigr 28081 28707 104 - . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LINE_L2 18668 18952 90 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold1635 WUBlastX LINE_L2 9452 9919 185 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_L2 76166 76270 56 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Ngaro 388790 389134 101 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Ngaro 389175 389435 82 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 538975 539325 143 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 902118 902561 157 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 902549 902725 99 - . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX DNA_Kolobok-IS4 24785 25438 212 + . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold41798 WUBlastX DNA_hAT-Ac 104447 104530 25 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_hAT-Tip100 165097 165546 64 - . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LINE_Penelope 18889 19347 216 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 115729 115923 59 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 116055 116255 30 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 116436 116516 31 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 116963 117142 70 + . . . . . -1 -1 -1 . . . scaffold66 WUBlastX LINE_RTE-BovB 8504 9022 129 + . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX DNA_Sola 89897 90964 214 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_TcMar-Tc1 787095 787889 137 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LTR_Gypsy-Cigr 135301 136302 646 - . . . . . -1 -1 -1 . . . scaffold33958 WUBlastX LTR_Gypsy 7650 7895 30 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 119405 120973 985 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Pao 83866 84141 194 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold678 WUBlastX LINE_Rex-Babar 388714 388794 37 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 175790 176206 188 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Gypsy 65921 66106 49 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy 278621 278881 139 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1606221 1606532 112 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold31484 WUBlastX RC_Helitron 8771 9340 100 - . . . . . -1 -1 -1 . . . scaffold31484 WUBlastX RC_Helitron 9352 9591 101 - . . . . . -1 -1 -1 . . . scaffold35 WUBlastX DNA_IS4EU 1896 2264 85 - . . . . . -1 -1 -1 . . . scaffold35 WUBlastX DNA_IS4EU 2314 2520 22 - . . . . . -1 -1 -1 . . . scaffold1334 WUBlastX LINE_Penelope 9544 9726 44 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold36482 WUBlastX LINE_Penelope 34493 34678 30 + . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LINE_L1 100543 100953 28 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold1179 WUBlastX LINE_L1-Tx1 1213256 1214002 87 + . . scaffold1179 GLEAN mRNA 1211321 1215235 0.457085 - . ID=CGI_10027415; scaffold1219 WUBlastX LINE_L1-Tx1 786156 786641 187 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_RTE-X 83428 83736 150 - . . . . . -1 -1 -1 . . . scaffold37430 WUBlastX LTR_Pao 41134 41742 142 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 42818 43177 26 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 1321685 1323688 1706 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Pao 1105 1578 169 + . . . . . -1 -1 -1 . . . scaffold43064 WUBlastX LINE_CR1 162046 162123 42 - . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_L2 136011 136214 137 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Ngaro 277044 277538 130 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Gypsy 989733 989852 23 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold1480 WUBlastX DNA_Harbinger 73057 73425 121 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Harbinger 73852 73971 133 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX DNA_Harbinger 130063 130332 112 + . . . . . -1 -1 -1 . . . scaffold1779 WUBlastX DNA_Harbinger 25733 26212 212 - . . scaffold1779 GLEAN mRNA 25311 28509 0.999221 - . ID=CGI_10001860; scaffold858 WUBlastX LINE_Jockey 16894 16944 20 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold1352 WUBlastX LINE_L1-Tx1 6297 6683 58 + . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_RTE-X 159349 160113 151 + . . . . . -1 -1 -1 . . . scaffold1756 WUBlastX LINE_RTE-BovB 13634 13879 37 + . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX LINE_RTE-BovB 130049 130357 250 + . . . . . -1 -1 -1 . . . scaffold1573 WUBlastX LINE_RTE-X 38834 39196 137 - . . . . . -1 -1 -1 . . . scaffold1573 WUBlastX LINE_RTE-X 39190 39423 35 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_TcMar-Tc1 95176 95577 193 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX DNA_TcMar-Tc2 17140 17223 70 + . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LTR_DIRS 213672 214049 20 - . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy-Cigr 22276 24459 1540 + . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy-Cigr 24414 25256 456 + . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LTR_Gypsy 70867 73761 1388 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Pao 81938 83914 180 + . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LTR_Gypsy 162878 163303 237 - . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX LTR_Pao 72154 72459 286 - . . scaffold39858 GLEAN mRNA 65424 78749 0.99005 + . ID=CGI_10003660; scaffold469 WUBlastX LINE_CR1 330018 330254 80 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_CR1-L2 288197 288271 27 + . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_L2 46644 47024 86 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 171555 172019 268 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 456420 456998 172 - . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold43680 WUBlastX DNA_Harbinger 164189 164245 23 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 384944 385351 114 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_RTE-X 147558 148310 169 - . . . . . -1 -1 -1 . . . scaffold33876 WUBlastX DNA_Maverick 9854 9991 23 - . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 87170 87814 168 - . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 88730 88918 76 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_L1-Tx1 467279 467980 62 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold1665 WUBlastX LTR_Gypsy 18345 18485 36 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 18496 18987 159 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 19828 20142 300 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 20256 20819 587 + . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Gypsy 74314 75138 744 - . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Gypsy 75142 76647 1188 - . . . . . -1 -1 -1 . . . scaffold41998 WUBlastX LINE_RTE-BovB 20608 22071 1050 - . . . . . -1 -1 -1 . . . scaffold41998 WUBlastX LINE_RTE-BovB 22854 24218 1035 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_CR1-L2 140519 141031 185 - . . scaffold1174 GLEAN mRNA 122742 144408 0.527772 + . ID=CGI_10026027; scaffold960 WUBlastX LINE_CR1-L2 332639 333364 255 + . . . . . -1 -1 -1 . . . scaffold1511 WUBlastX DNA_Crypton 170227 170976 132 + . . . . . -1 -1 -1 . . . scaffold29372 WUBlastX LTR_Ngaro 3395 3772 196 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_En-Spm 52170 52313 40 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Harbinger 380228 381151 180 - . . . . . -1 -1 -1 . . . scaffold917 WUBlastX DNA_Harbinger 154104 154217 122 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Harbinger 154620 154829 134 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Harbinger 155076 155267 54 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold1737 WUBlastX LTR_Gypsy 341127 341435 126 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy 35826 36632 301 + . . . . . -1 -1 -1 . . . scaffold38220 WUBlastX RC_Helitron 16129 16890 249 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Harbinger 115509 115778 35 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_Kolobok-IS4 189451 189843 240 - . . . . . -1 -1 -1 . . . scaffold39598 WUBlastX DNA_Kolobok 28331 28522 56 + . . . . . -1 -1 -1 . . . C34846 WUBlastX LINE_L1 568 1011 237 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_MuDR 589623 590009 104 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold1525 WUBlastX LINE_RTE-X 244357 244494 31 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_RTE-X 24952 25665 202 + . . . . . -1 -1 -1 . . . scaffold580 WUBlastX DNA_Harbinger 549386 549979 224 + . . scaffold580 GLEAN mRNA 548794 565173 0.999676 + . ID=CGI_10020516; scaffold503 WUBlastX LTR_DIRS 160356 161027 160 + . . . . . -1 -1 -1 . . . scaffold503 WUBlastX LTR_DIRS 161152 161343 101 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_L1-Tx1 22333 22653 89 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 156697 156753 22 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 157199 157525 200 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX DNA_TcMar-Tc1 340464 341045 248 + . . scaffold578 GLEAN mRNA 339528 348737 0.999218 - . ID=CGI_10015129; scaffold41560 WUBlastX LINE_CR1-L2 95832 96542 223 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_CR1-L2 51498 51797 143 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 112921 113097 77 + . . . . . -1 -1 -1 . . . C23742 WUBlastX LINE_L2 785 1255 226 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX DNA_hAT-Tip100 166335 166550 58 - . . scaffold374 GLEAN mRNA 164183 170659 0.970084 - . ID=CGI_10018719; scaffold374 WUBlastX DNA_hAT-Tip100 166640 166855 102 - . . scaffold374 GLEAN mRNA 164183 170659 0.970084 - . ID=CGI_10018719; scaffold1707 WUBlastX DNA_hAT-hATw 81794 81958 27 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 15550 15924 35 + . . . . . -1 -1 -1 . . . scaffold415 WUBlastX LTR_Gypsy 81411 83018 175 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L2 824145 824225 30 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1 125384 125560 27 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1-Tx1 136387 137262 29 - . . scaffold288 GLEAN mRNA 119793 142586 0.674065 - . ID=CGI_10020658; scaffold288 WUBlastX LINE_L1-Tx1 137388 137627 122 - . . scaffold288 GLEAN mRNA 119793 142586 0.674065 - . ID=CGI_10020658; scaffold568 WUBlastX LINE_RTE-X 218003 218437 64 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 187722 188099 199 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX DNA_PiggyBac 42505 43284 223 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_RTE-X 379535 379873 164 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 136422 136577 27 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LTR_Gypsy 87699 88208 94 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LTR_Pao 126238 127434 474 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold146 WUBlastX LINE_CR1-L2 586780 587310 251 + . . . . . -1 -1 -1 . . . scaffold36862 WUBlastX DNA_En-Spm 5513 6367 141 - . . . . . -1 -1 -1 . . . scaffold36862 WUBlastX DNA_En-Spm 7090 7209 43 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 1455472 1456161 21 - . . . . . -1 -1 -1 . . . scaffold32786 WUBlastX DNA_IS4EU 7744 8325 234 + . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX DNA_IS4EU 56354 57430 163 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 673072 674064 190 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L1 635440 635721 56 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold770 WUBlastX DNA_PiggyBac 46738 46965 66 + . . . . . -1 -1 -1 . . . scaffold36462 WUBlastX LINE_RTE-X 20268 20450 127 - . . scaffold36462 GLEAN mRNA 15214 26775 0.999351 - . ID=CGI_10001929; scaffold4 WUBlastX LINE_RTE-X 98291 99037 190 + . . . . . -1 -1 -1 . . . scaffold1400 WUBlastX LINE_RTE-X 2884 3561 165 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 472079 472195 35 + . . . . . -1 -1 -1 . . . C32028 WUBlastX LINE_L1-Tx1 10235 10669 309 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LTR_Gypsy 136363 136446 33 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 79401 80093 700 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 82318 82680 258 - . . . . . -1 -1 -1 . . . C35794 WUBlastX LTR_Pao 8570 9502 504 + . . . . . -1 -1 -1 . . . C35794 WUBlastX LTR_Pao 9569 9967 238 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Pao 1307567 1308673 257 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Pao 360756 361160 30 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX LINE_L1 128608 129066 133 + . . scaffold1754 GLEAN mRNA 124608 131066 0.788238 + . ID=CGI_10009580; scaffold481 WUBlastX LINE_L2 1325929 1326567 219 + . . . . . -1 -1 -1 . . . scaffold39526 WUBlastX LTR_Ngaro 61870 61944 29 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 313487 313642 50 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_IS4EU 8306 8461 74 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_IS4EU 790546 791046 220 - . . . . . -1 -1 -1 . . . scaffold36816 WUBlastX LINE_L1 1001 1942 234 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_Penelope 42703 43137 135 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 633571 633792 143 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-X 137623 137919 73 - . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_RTE-X 171731 172573 238 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 774865 775707 236 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 415513 415872 123 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold1575 WUBlastX LTR_Gypsy 69253 70668 1079 + . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LTR_Gypsy 70602 70937 257 + . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LTR_Gypsy 70865 71395 416 + . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LTR_Gypsy 71394 72035 321 + . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1 9526 10383 87 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1 23642 24499 87 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Gypsy 445129 445506 269 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Gypsy 445809 445940 61 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_En-Spm 202376 203176 176 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Jockey 235158 235307 60 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_L1-Tx1 182862 183854 189 + . . . . . -1 -1 -1 . . . scaffold43278 WUBlastX LINE_Penelope 80422 80601 63 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 498560 498664 51 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 457835 458209 90 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1-Tx1 225006 225335 151 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 422543 422749 147 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Ngaro 235023 235562 164 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_RTE-BovB 254553 254975 140 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_RTE-BovB 255344 255580 80 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-BovB 175070 175468 77 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_Penelope 661582 662385 142 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_Penelope 662423 662752 172 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-X 138381 138701 223 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_RTE-BovB 150121 150711 139 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-BovB 48643 48861 52 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Maverick 543148 543393 112 + . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX DNA_Maverick 100053 100784 194 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold43794 WUBlastX LTR_DIRS? 153730 153819 34 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy 278881 278952 20 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1 88947 89087 23 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_RTE-X 675542 676294 195 + . . . . . -1 -1 -1 . . . C34792 WUBlastX LINE_RTE-X 7749 8666 192 + . . . . . -1 -1 -1 . . . scaffold1460 WUBlastX LINE_RTE-X 5385 6020 248 + . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LINE_RTE-X 100204 100767 270 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L1 10977 11804 190 - . . scaffold413 GLEAN mRNA 9716 19114 0.940957 - . ID=CGI_10022791; scaffold1062 WUBlastX LINE_CR1 8793 9104 152 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold358 WUBlastX LINE_L2 145288 145578 165 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_L2 570432 570659 130 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold1715 WUBlastX LINE_L2 570984 571172 53 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold1866 WUBlastX LINE_CR1-L2 224943 225191 86 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold41304 WUBlastX LTR_Ngaro 95546 96457 155 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Ngaro 89588 90082 145 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LTR_Ngaro 152173 152616 228 - . . . . . -1 -1 -1 . . . scaffold37508 WUBlastX LTR_Gypsy 33444 34028 300 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX DNA_IS4EU 327794 328681 260 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LINE_L1-Tx1 80830 81444 140 + . . scaffold97 GLEAN mRNA 72894 92330 0.60683 - . ID=CGI_10005686; scaffold1350 WUBlastX LINE_L2 495710 497149 228 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_Penelope 115320 115376 24 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy 184504 185178 326 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 381543 382136 265 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_RTE-X 561315 561698 98 + . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LINE_CR1-L2 225453 226550 192 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy-Cigr 331868 332917 356 + . . scaffold1307 GLEAN mRNA 323239 332767 0.901731 + . ID=CGI_10023754; scaffold481 WUBlastX LTR_Gypsy 241222 241398 20 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_IS4EU 50012 50140 89 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 379301 379720 76 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX DNA_Kolobok 64474 64704 39 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold39598 WUBlastX DNA_Kolobok 26669 27289 204 + . . . . . -1 -1 -1 . . . scaffold39974 WUBlastX LTR_Ngaro 69863 70363 346 + . . scaffold39974 GLEAN mRNA 67732 80297 0.969362 + . ID=CGI_10003760; scaffold39582 WUBlastX LINE_L1-Tx1 60931 61305 71 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LTR_Pao 130176 130499 128 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LTR_Pao 130502 130849 263 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_DIRS 24209 24349 66 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold1180 WUBlastX LTR_DIRS 25043 25417 90 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold37006 WUBlastX LTR_DIRS 26561 26830 100 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold1403 WUBlastX LTR_Gypsy 194699 195301 117 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 127587 128141 199 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1866 WUBlastX DNA_IS4EU 142751 143515 297 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_RTE-X 402393 402536 41 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold443 WUBlastX LINE_RTE-X 271746 272447 167 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Harbinger 120038 120292 183 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 866472 866756 97 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 865604 866278 249 + . . . . . -1 -1 -1 . . . scaffold1855 WUBlastX LINE_L1-Tx1 74233 74781 286 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_RTE-BovB 500837 500968 104 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_RTE-BovB 500971 501027 20 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_RTE-BovB 501127 501216 40 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_RTE-BovB 501276 501758 184 + . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LINE_L1 19277 19675 35 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold247 WUBlastX LINE_L2 349425 351710 112 - . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX LINE_CR1-L2 140 454 88 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_DIRS 326796 327707 267 + . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold998 WUBlastX LINE_L1-Tx1 125880 126593 71 + . . scaffold998 GLEAN mRNA 116508 131912 0.996071 - . ID=CGI_10006465; scaffold998 WUBlastX LINE_L1-Tx1 126571 127287 140 + . . scaffold998 GLEAN mRNA 116508 131912 0.996071 - . ID=CGI_10006465; scaffold43244 WUBlastX LINE_L1 26367 26591 42 - . . . . . -1 -1 -1 . . . scaffold1334 WUBlastX LINE_Penelope 9121 9687 58 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold1896 WUBlastX LINE_RTE-BovB 157743 158093 181 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_RTE-BovB 158089 158241 46 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_RTE-BovB 158435 159184 47 - . . . . . -1 -1 -1 . . . scaffold43064 WUBlastX LINE_RTE-X 21277 21408 55 - . . scaffold43064 GLEAN mRNA 2241 22972 0.292417 + . ID=CGI_10008625; scaffold730 WUBlastX LTR_Gypsy 210337 210642 69 + . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX LTR_Gypsy 120785 122275 406 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_Harbinger 616312 616449 51 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616537 616797 200 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616958 617296 162 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold40290 WUBlastX LINE_RTE-X 71041 71226 48 - . . . . . -1 -1 -1 . . . scaffold40290 WUBlastX LINE_RTE-X 71588 72097 194 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 750409 751074 371 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy-Cigr 76374 76532 58 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy-Cigr 76705 77304 338 - . . . . . -1 -1 -1 . . . scaffold43452 WUBlastX DNA_hAT 147634 148887 346 + . . scaffold43452 GLEAN mRNA 147634 149397 0.499173 + . ID=CGI_10010482; scaffold606 WUBlastX LTR_Gypsy 294680 295288 209 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Harbinger 250348 250554 98 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_RTE-BovB 111879 112694 368 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_DIRS 381454 382422 354 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LINE_CR1-L2 206555 206830 107 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold236 WUBlastX LINE_L2 409880 410170 140 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 498721 499122 160 - . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LINE_RTE-X 40677 40946 53 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_Sola 337319 338683 391 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX DNA_TcMar-Tc1 165698 166555 333 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Zator 162919 163332 152 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Zator 163584 163748 28 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Pao 66502 66636 56 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold43278 WUBlastX DNA_hAT-Tip100 81751 82149 185 + . . . . . -1 -1 -1 . . . scaffold43278 WUBlastX DNA_hAT-Tip100 82217 82849 184 + . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX DNA_TcMar-m44 4188 4874 344 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 511675 512295 154 - . . . . . -1 -1 -1 . . . scaffold43526 WUBlastX LTR_Pao 168021 169103 279 + . . . . . -1 -1 -1 . . . scaffold43526 WUBlastX LTR_Pao 169042 169170 24 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_Academ 426225 426989 363 + . . scaffold363 GLEAN mRNA 426498 426851 0.999949 + . ID=CGI_10019306; scaffold288 WUBlastX LTR_DIRS 594483 595406 361 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 127029 127184 53 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1211410 1211676 92 + . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LTR_Gypsy 191892 192899 366 - . . scaffold1277 GLEAN mRNA 180148 200196 1 + . ID=CGI_10008024; scaffold896 WUBlastX LINE_R2-Hero 115155 115667 200 + . . scaffold896 GLEAN mRNA 79994 116374 0.57033 - . ID=CGI_10022832; scaffold896 WUBlastX LINE_R2-Hero 115673 115981 192 + . . scaffold896 GLEAN mRNA 79994 116374 0.57033 - . ID=CGI_10022832; scaffold896 WUBlastX LINE_R2-Hero 115983 116141 48 + . . scaffold896 GLEAN mRNA 79994 116374 0.57033 - . ID=CGI_10022832; scaffold531 WUBlastX LTR_Gypsy 331485 332093 79 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_MuDR 714862 716214 341 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 124110 124511 106 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_L1-Tx1 786320 787447 260 - . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_Penelope 45 191 42 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_Penelope 205 582 210 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX DNA_Maverick 59808 60401 391 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1-Tx1 698735 699712 197 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1-Tx1 699717 699932 121 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Maverick 136159 136779 112 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 137077 137178 30 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 137178 137648 136 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 137721 137876 117 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold502 WUBlastX LINE_RTE-X 224750 225655 254 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 360352 360957 52 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 361508 361978 120 + . . . . . -1 -1 -1 . . . scaffold39064 WUBlastX LINE_RTE-X 62848 63639 241 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L1-Tx1 402819 403433 178 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_L2 99416 100117 244 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_L2 100104 100373 110 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L2 399918 400523 287 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 11827 11901 30 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 856766 857128 166 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-BovB 94109 94540 119 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-BovB 94660 95118 236 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_RTE-X 215374 217032 242 + . . scaffold43702 GLEAN mRNA 215243 218046 1 - . ID=CGI_10011915; scaffold481 WUBlastX LTR_Ngaro 1181687 1181755 50 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LINE_RTE-X 512675 513031 91 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 334843 335553 144 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 335550 335840 177 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX DNA_hAT 70758 70889 27 + . . scaffold789 GLEAN mRNA 70758 72925 0.499999 + . ID=CGI_10017180; scaffold789 WUBlastX DNA_hAT 71273 72898 404 + . . scaffold789 GLEAN mRNA 70758 72925 0.499999 + . ID=CGI_10017180; scaffold1340 WUBlastX DNA_hAT 4669 6294 404 - . . scaffold1340 GLEAN mRNA 4642 6809 1 - . ID=CGI_10001405; scaffold1340 WUBlastX DNA_hAT 6678 6809 27 - . . scaffold1340 GLEAN mRNA 4642 6809 1 - . ID=CGI_10001405; scaffold772 WUBlastX DNA_En-Spm 202616 203494 256 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 792219 793064 220 - . . . . . -1 -1 -1 . . . scaffold707 WUBlastX DNA_Harbinger 47451 47711 102 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 48493 48606 110 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 49261 49629 157 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold579 WUBlastX LINE_RTE-BovB 268182 268334 131 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold41816 WUBlastX LINE_RTE-X 86960 87229 25 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold1017 WUBlastX LINE_RTE-X 83114 83317 105 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_Harbinger 137234 137431 61 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 137571 137768 117 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 137855 137941 53 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 138128 138250 82 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold1698 WUBlastX DNA_Harbinger 225069 225266 61 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Harbinger 225406 225603 117 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Harbinger 225690 225776 53 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Harbinger 225963 226085 82 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 91427 92149 181 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L1-Tx1 801555 801788 90 - . . . . . -1 -1 -1 . . . scaffold49 WUBlastX LINE_L2 192564 192896 99 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX DNA_TcMar-Marin 363913 364317 231 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_Maverick 9377 9679 118 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Ngaro 306237 307139 411 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 134562 135317 72 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 698066 698194 44 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_MuDR 980422 982260 439 + . . scaffold142 GLEAN mRNA 963818 985587 0.999623 - . ID=CGI_10026782; scaffold1009 WUBlastX LINE_L1-Tx1 199325 200641 313 + . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 133542 133751 42 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX DNA_TcMar-Tc1 18330 19220 388 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold42208 WUBlastX LTR_Gypsy 97221 97946 513 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Harbinger 128685 129056 149 + . . . . . -1 -1 -1 . . . scaffold589 WUBlastX DNA_TcMar-Tc1 47053 48093 413 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_TcMar-Tc1 398716 399747 401 + . . . . . -1 -1 -1 . . . scaffold42364 WUBlastX LINE_CR1-L2 76004 76306 85 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold1 WUBlastX LINE_RTE-X 135884 136099 37 - . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_RTE-X 11395 11589 66 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold1053 WUBlastX LINE_RTE-BovB 193597 194391 485 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_RTE-X 136784 137143 59 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L2 73848 74555 263 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 15634 16239 66 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_L2 89411 89947 197 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L1-Tx1 3128 4381 357 + . . scaffold1017 GLEAN mRNA 2075 8937 1 - . ID=CGI_10024977; scaffold1207 WUBlastX LINE_L1-Tx1 576 1820 423 + . . . . . -1 -1 -1 . . . scaffold41212 WUBlastX LINE_L2 12488 14113 286 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 131248 131490 136 - . . . . . -1 -1 -1 . . . scaffold29598 WUBlastX LINE_RTE-X 3215 3796 412 - . . scaffold29598 GLEAN mRNA 1487 5790 0.999943 - . ID=CGI_10000548; scaffold321 WUBlastX DNA_Maverick 234127 234300 38 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-X 782913 783029 52 + . . . . . -1 -1 -1 . . . scaffold38116 WUBlastX LINE_L1-Tx1 12077 12427 56 - . . . . . -1 -1 -1 . . . scaffold1266 WUBlastX LTR_Ngaro 61033 61212 109 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LTR_Gypsy 192053 192343 97 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 432942 432995 21 - . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1 31227 31496 43 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_RTE-X 169571 170179 60 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Ngaro 61721 62161 231 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LTR_Ngaro 167145 168152 468 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold372 WUBlastX LINE_L1-Tx1 10878 12119 320 - . . . . . -1 -1 -1 . . . scaffold38882 WUBlastX DNA_TcMar-m44 44965 45858 544 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_TcMar-Tc1 4072 4680 399 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_TcMar-Tc1 4748 4951 89 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 469014 471281 384 + . . scaffold541 GLEAN mRNA 466590 480582 0.782383 + . ID=CGI_10022394; C29178 WUBlastX LINE_L1-Tx1 4709 5059 213 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 243308 243592 33 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 149013 149336 22 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L2 479916 480533 190 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L2 480697 481134 297 + . . . . . -1 -1 -1 . . . scaffold34356 WUBlastX LTR_Ngaro 575 892 223 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 10916 11689 567 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LTR_Ngaro 180784 180972 28 + . . . . . -1 -1 -1 . . . scaffold36906 WUBlastX LTR_DIRS 17139 17219 33 - . . scaffold36906 GLEAN mRNA 239 18767 0.841273 + . ID=CGI_10002185; scaffold395 WUBlastX LTR_Gypsy 48929 49273 76 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy 51277 51885 46 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1-Tx1 155545 155964 167 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 683183 683386 82 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1756 WUBlastX LINE_RTE-X 13885 14331 255 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LINE_RTE-X 160537 161289 176 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-X 75689 76156 335 + . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-X 76131 76388 86 + . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-X 76363 76755 83 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1-Tx1 32132 32647 242 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_CR1-L2 31585 32076 129 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold99 WUBlastX LINE_CR1-L2 32382 33008 233 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold1507 WUBlastX LTR_Ngaro 13515 13787 189 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold1507 WUBlastX LTR_Ngaro 13898 14131 144 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold1507 WUBlastX LTR_Ngaro 14107 14325 99 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold43136 WUBlastX LINE_L1-Tx1 170295 170780 87 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 105644 105805 42 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 106439 106597 121 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 107114 107347 125 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 107693 108058 86 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_TcMar-Tc1 52503 53423 339 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_TcMar-Tc1 53413 53490 29 + . . . . . -1 -1 -1 . . . scaffold474 WUBlastX RC_Helitron 105392 106411 435 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX DNA_hAT-Tip100 40432 40776 165 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX DNA_hAT-Tip100 41103 42140 357 + . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX DNA_TcMar-Marin 385082 385225 68 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 340752 340901 119 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 236445 237119 155 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_DIRS 66252 66737 343 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_IS4EU 216276 217277 457 - . . scaffold1714 GLEAN mRNA 216267 217025 1 - . ID=CGI_10013674; scaffold77 WUBlastX LINE_RTE-BovB 949391 949882 213 + . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold853 WUBlastX DNA_PiggyBac 281747 282448 310 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-X 436420 436650 20 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 500517 500708 45 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_L1-Tx1 364178 364381 66 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX LINE_RTE-X 219866 220099 48 - . . scaffold1210 GLEAN mRNA 219854 220240 0.999999 - . ID=CGI_10014605; scaffold248 WUBlastX LINE_L1-Tx1 402492 403412 109 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 1075076 1075792 390 - . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX DNA_TcMar-Marin 27058 27462 240 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1 115050 115754 102 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-BovB 160020 160166 26 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_RTE-X 167250 168185 562 + . . scaffold1036 GLEAN mRNA 165168 179169 0.593142 - . ID=CGI_10019951; scaffold343 WUBlastX DNA_TcMar-Pogo 213684 214457 318 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_DIRS 89716 90645 558 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold1104 WUBlastX LTR_DIRS 27585 28514 558 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX RC_Helitron 330831 331013 113 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_TcMar-Tc1 223352 224239 477 + . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_L2 45262 45750 25 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 691942 693324 398 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_hAT-Ac 92576 93394 423 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold1174 WUBlastX LINE_L1 169577 170143 307 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold1096 WUBlastX LINE_L1 49009 49257 44 - . . . . . -1 -1 -1 . . . C25486 WUBlastX LTR_Gypsy 544 2106 383 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_DIRS 333123 334043 440 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_DIRS 333997 334629 89 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_Gypsy 586064 586243 42 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy-Cigr 145269 145982 120 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Ngaro 288924 290150 531 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold203 WUBlastX DNA_Crypton 108682 109695 609 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold43036 WUBlastX DNA_hAT-Blackja 150595 150807 106 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX DNA_hAT-Blackja 150806 151774 322 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold219 WUBlastX DNA_Harbinger 11179 11394 66 - . . . . . -1 -1 -1 . . . scaffold219 WUBlastX DNA_Harbinger 11393 11905 368 - . . . . . -1 -1 -1 . . . scaffold219 WUBlastX DNA_Harbinger 11926 12147 135 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Ac 791105 791284 39 - . . . . . -1 -1 -1 . . . scaffold452 WUBlastX LINE_L1-Tx1 142054 143394 441 + . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX LINE_RTE-X 310245 311006 142 - . . scaffold1722 GLEAN mRNA 308195 316246 0.999949 - . ID=CGI_10014888; scaffold1054 WUBlastX DNA_TcMar-Tc1 119154 120104 507 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Zator 133038 133271 66 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Zator 133410 133991 194 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Zator 134003 134932 332 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_Penelope 130868 132181 520 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 851282 851575 69 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 48588 49232 376 - . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_RTE-X 147987 148484 223 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_RTE-X 112198 112746 193 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold721 WUBlastX LINE_L2 84424 84570 80 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold58 WUBlastX LTR_Gypsy 264596 265042 63 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 470472 470888 178 - . . . . . -1 -1 -1 . . . C32272 WUBlastX LINE_L1-Tx1 6271 6954 389 + . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LINE_L1-Tx1 54949 55707 181 - . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_RTE-X 48819 49514 249 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_CR1-L2 239482 239535 33 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 82493 83149 277 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 515135 515320 26 + . . . . . -1 -1 -1 . . . scaffold13 WUBlastX DNA_PiggyBac 147767 149473 658 - . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LTR_Gypsy 71624 73888 655 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_DIRS 484956 485609 123 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Ngaro 259972 260088 39 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Ngaro 260072 260812 629 + . . . . . -1 -1 -1 . . . scaffold331 WUBlastX LINE_Penelope 46657 48183 539 - . . . . . -1 -1 -1 . . . scaffold270 WUBlastX LINE_RTE-BovB 95545 95742 116 + . . . . . -1 -1 -1 . . . scaffold270 WUBlastX LINE_RTE-BovB 95831 96793 514 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_L1-Tx1 3642 3902 93 + . . . . . -1 -1 -1 . . . scaffold37358 WUBlastX LINE_CR1 36749 37582 326 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_CR1-L2 45698 45820 22 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_Gypsy 453388 453822 194 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold43920 WUBlastX DNA_TcMar-Fot1 248945 250468 571 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 589170 589208 23 + . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX LTR_Gypsy 168118 168300 31 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; C31978 WUBlastX RC_Helitron 4167 4226 28 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_Penelope 140467 141045 122 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_Penelope 141111 141938 449 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_Sola 613670 613783 32 - . . scaffold6 GLEAN mRNA 613145 618796 0.999953 - . ID=CGI_10022330; scaffold6 WUBlastX DNA_Sola 613747 615075 614 - . . scaffold6 GLEAN mRNA 613145 618796 0.999953 - . ID=CGI_10022330; scaffold977 WUBlastX LINE_L1-Tx1 363164 363676 52 - . . . . . -1 -1 -1 . . . scaffold951 WUBlastX DNA_Zator 202624 202977 60 - . . . . . -1 -1 -1 . . . scaffold951 WUBlastX DNA_Zator 203141 204418 609 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 29188 30207 479 + . . . . . -1 -1 -1 . . . scaffold1375 WUBlastX LTR_Pao 25613 26230 25 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_L1-Tx1 364211 364381 97 - . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LINE_L2 6895 6993 47 - . . scaffold1708 GLEAN mRNA 6391 9576 0.777526 + . ID=CGI_10005574; scaffold482 WUBlastX LINE_RTE-X 215869 216594 393 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_CR1-L2 67199 67834 325 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Ngaro 401176 402057 503 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Ngaro 402054 402407 128 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L2 1083911 1084951 565 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold43782 WUBlastX LINE_RTE-X 112327 112743 203 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold184 WUBlastX LINE_RTE-X 27491 29113 658 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LTR_Gypsy 221121 222365 766 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 221674 221802 99 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 221807 222262 237 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 223625 223966 154 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 224064 224201 44 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 540585 540746 20 - . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LINE_CR1 23301 23483 103 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX RC_Helitron 33517 36846 578 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_CR1-L2 388568 389188 210 - . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_RTE-BovB 47423 48235 320 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_CR1 212696 213772 799 + . . . . . -1 -1 -1 . . . scaffold1392 WUBlastX LTR_DIRS 6689 8056 732 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 90253 91278 348 + . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LTR_Gypsy 27468 27587 54 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LTR_DIRS 146453 146914 219 + . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LTR_DIRS 147138 147851 570 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 393666 394436 323 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L1-Tx1 26926 27165 78 - . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LINE_L2 8613 8837 70 - . . scaffold1708 GLEAN mRNA 6391 9576 0.777526 + . ID=CGI_10005574; C34948 WUBlastX LINE_RTE-X 3892 5340 619 + . . . . . -1 -1 -1 . . . scaffold1357 WUBlastX LTR_Gypsy 3741 4547 43 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Gypsy 25297 25731 126 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Gypsy 26855 27820 381 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy 64578 65351 57 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold41304 WUBlastX LTR_Ngaro 57527 57847 217 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LTR_Gypsy 516516 516806 27 - . . . . . -1 -1 -1 . . . scaffold33958 WUBlastX LTR_Gypsy 13693 13860 58 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LTR_Ngaro 91762 92733 432 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold86 WUBlastX LTR_Ngaro 1532483 1532998 373 - . . . . . -1 -1 -1 . . . scaffold41466 WUBlastX LINE_L2 39920 41365 414 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1 496522 497250 125 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1 499834 500163 86 + . . . . . -1 -1 -1 . . . C27146 WUBlastX LTR_Gypsy 3058 4068 553 - . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LTR_Ngaro 177628 178881 881 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 562423 563814 640 - . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-X 201372 201902 236 - . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-X 201880 202986 232 - . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-X 203001 203846 26 - . . . . . -1 -1 -1 . . . scaffold33618 WUBlastX LTR_DIRS 3990 4232 187 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX DNA_Harbinger 37042 37440 307 - . . scaffold44008 GLEAN mRNA 36940 62806 0.508026 - . ID=CGI_10015282; scaffold44008 WUBlastX DNA_Harbinger 37443 38204 528 - . . scaffold44008 GLEAN mRNA 36940 62806 0.508026 - . ID=CGI_10015282; scaffold36450 WUBlastX RC_Helitron 5703 6929 278 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold38378 WUBlastX LINE_L1-Tx1 51216 51803 101 - . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_Rex-Babar 13299 13691 64 - . . . . . -1 -1 -1 . . . scaffold771 WUBlastX LINE_CR1-L2 317440 317514 23 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_CR1 5871 5975 21 + . . . . . -1 -1 -1 . . . scaffold1235 WUBlastX LINE_L2 160641 160721 24 - . . scaffold1235 GLEAN mRNA 159432 170109 0.960098 - . ID=CGI_10011836; scaffold1098 WUBlastX LINE_L2 129149 129475 51 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L2 197295 197492 59 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_CR1 98553 98918 29 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 106561 107004 39 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_Pao 63685 64023 54 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LTR_Pao 143518 143856 54 + . . . . . -1 -1 -1 . . . scaffold38364 WUBlastX LTR_Gypsy 13500 14330 42 + . . scaffold38364 GLEAN mRNA 13434 14450 0.986568 + . ID=CGI_10002730; scaffold973 WUBlastX LTR_Pao 202862 203215 54 + . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-RTE 48413 48625 45 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_L2 75139 75378 32 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_Ngaro 22267 22560 45 + . . scaffold831 GLEAN mRNA 21855 31981 1 + . ID=CGI_10010286; scaffold1900 WUBlastX LTR_Gypsy 410122 411096 56 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Ngaro 1017645 1017872 41 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Ngaro 980868 981035 78 - . . scaffold885 GLEAN mRNA 956449 984182 0.969214 + . ID=CGI_10025232; scaffold252 WUBlastX LTR_Ngaro 180564 180710 34 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Ngaro 209544 209723 60 + . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LTR_Ngaro 56105 56221 44 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 40341 40796 49 - . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LTR_Ngaro 71814 72563 34 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LTR_Ngaro 59916 60101 61 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_Crypton 97373 97579 79 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold659 WUBlastX LINE_L2 362603 362725 71 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L2 202219 202449 39 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LINE_CR1 46968 47042 25 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_Gypsy-Cigr 108471 108776 73 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 37918 38169 65 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold422 WUBlastX LTR_Gypsy 402451 402537 22 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 403074 403457 62 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Blackja 577929 578015 30 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_hAT-Tip100 359264 359563 81 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold854 WUBlastX DNA_IS4EU 638115 638315 34 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_TcMar-Marin 1818 2024 21 + . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX DNA_Harbinger 151086 151211 29 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; C17650 WUBlastX LTR_Gypsy 307 510 58 + . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LTR_Gypsy 129939 130070 32 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX DNA_Kolobok 161709 161819 66 - . . scaffold1035 GLEAN mRNA 157961 163458 0.999666 + . ID=CGI_10009365; scaffold267 WUBlastX DNA_Kolobok 492428 492604 75 + . . scaffold267 GLEAN mRNA 492434 492911 1 + . ID=CGI_10018313; scaffold583 WUBlastX DNA_TcMar-Marin 819353 819604 56 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 1600286 1600366 64 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold442 WUBlastX DNA_TcMar-Marin 68245 68427 77 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_TcMar-Marin 175640 175894 46 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX DNA_TcMar-Marin 448578 448763 32 + . . scaffold1682 GLEAN mRNA 447464 452325 1 - . ID=CGI_10016060; C21242 WUBlastX DNA_TcMar-Marin 580 726 53 + . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX DNA_P 106913 107155 71 + . . scaffold43624 GLEAN mRNA 106501 110062 0.981478 + . ID=CGI_10011506; scaffold365 WUBlastX LINE_L1 385517 385729 25 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_I-Nimb 1189191 1189415 73 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_Penelope 220435 220653 38 + . . . . . -1 -1 -1 . . . scaffold508 WUBlastX DNA_MuDR 151509 151895 42 - . . scaffold508 GLEAN mRNA 143632 151958 0.536138 - . ID=CGI_10011200; scaffold508 WUBlastX DNA_MuDR 167392 167778 42 - . . scaffold508 GLEAN mRNA 167248 167811 0.936033 - . ID=CGI_10011201; scaffold42124 WUBlastX DNA_MuDR 42702 42965 48 - . . scaffold42124 GLEAN mRNA 33717 47543 0.69411 + . ID=CGI_10006230; scaffold1179 WUBlastX LINE_L1 412712 412942 80 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1 940877 941167 33 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold802 WUBlastX LINE_L1 402823 403269 30 + . . scaffold802 GLEAN mRNA 402697 404202 0.586574 + . ID=CGI_10015735; scaffold338 WUBlastX LINE_L1 155776 155985 23 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_L1-Tx1 102483 102542 22 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_L1 2603 2764 42 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; C30752 WUBlastX LINE_L1-Tx1 71 199 24 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L1 294767 295024 35 - . . scaffold737 GLEAN mRNA 290958 298439 0.807998 - . ID=CGI_10014317; scaffold1021 WUBlastX LINE_L1-Tx1 261352 261573 93 + . . scaffold1021 GLEAN mRNA 253592 262840 0.558214 - . ID=CGI_10022488; scaffold42408 WUBlastX LINE_L1 112982 113233 71 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold1350 WUBlastX DNA_Kolobok 438857 439354 48 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX LINE_RTE-BovB 119534 119659 80 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-BovB 187629 187832 58 - . . . . . -1 -1 -1 . . . scaffold1276 WUBlastX LINE_RTE-BovB 28988 29221 78 + . . scaffold1276 GLEAN mRNA 7140 43389 0.398616 - . ID=CGI_10003438; scaffold1115 WUBlastX LINE_RTE-BovB 81770 81910 50 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_RTE-BovB 233775 233852 22 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-BovB 843528 843620 52 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LINE_RTE-BovB 146187 146279 52 + . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LTR_Gypsy 31671 32123 77 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold1163 WUBlastX LINE_RTE-BovB 213966 214259 66 + . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_RTE-BovB 145254 145829 42 - . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX DNA_PiggyBac 19022 19255 38 - . . scaffold1704 GLEAN mRNA 18953 19327 0.999984 - . ID=CGI_10010160; scaffold1704 WUBlastX DNA_PiggyBac 19022 19255 38 - . . scaffold1704 GLEAN mRNA 12405 27811 0.998148 + . ID=CGI_10010159; scaffold1061 WUBlastX DNA_Maverick 122578 122697 34 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_RTE-X 62613 62852 74 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_RTE-X 331838 332017 75 + . . scaffold967 GLEAN mRNA 330769 334091 1 + . ID=CGI_10015463; scaffold873 WUBlastX LINE_RTE-X 365124 365279 73 - . . . . . -1 -1 -1 . . . scaffold76 WUBlastX LINE_RTE-X 227718 227993 40 + . . scaffold76 GLEAN mRNA 221391 229684 0.999675 - . ID=CGI_10009406; scaffold43072 WUBlastX LINE_RTE-X 112632 112985 22 - . . scaffold43072 GLEAN mRNA 112346 129150 0.396359 - . ID=CGI_10008700; scaffold40786 WUBlastX LINE_RTE-X 9012 9332 48 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 10861 11049 57 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 569709 569807 42 - . . . . . -1 -1 -1 . . . scaffold696 WUBlastX LINE_RTE-X 20182 20307 29 + . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX LINE_RTE-X 10569 10850 61 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-X 480682 480819 24 + . . scaffold1179 GLEAN mRNA 480376 480813 0.593391 - . ID=CGI_10027372; scaffold1703 WUBlastX LINE_RTE-X 739604 739756 83 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-X 328185 328370 54 + . . . . . -1 -1 -1 . . . scaffold38884 WUBlastX LINE_RTE-X 31685 31900 46 + . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX LINE_RTE-X 97449 97571 39 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-X 800747 801073 26 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Ngaro 19449 19547 34 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Ngaro 354803 355078 47 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold38552 WUBlastX LTR_Gypsy 26242 26487 29 + . . . . . -1 -1 -1 . . . C22710 WUBlastX LTR_DIRS 963 1052 40 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 546218 546358 65 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_RTE-X 25525 25662 23 + . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX LINE_L1-Tx1 48983 49180 52 + . . . . . -1 -1 -1 . . . scaffold1679 WUBlastX LTR_Gypsy 32086 32553 43 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold62 WUBlastX LTR_Gypsy 113454 113771 36 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_L1-Tx1 156856 156996 81 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L1-Tx1 1235715 1236032 29 + . . . . . -1 -1 -1 . . . scaffold1333 WUBlastX LINE_L1-Tx1 171789 172202 65 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LINE_L1-Tx1 477693 477899 28 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX DNA_hAT-Tip100 268555 269064 47 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LTR_DIRS 171815 172021 74 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_TcMar-Tc1 358390 358563 34 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L2-Hydra 7306 7407 38 + . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_CR1-L2 92863 93063 65 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2 370246 370464 76 - . . . . . -1 -1 -1 . . . scaffold40476 WUBlastX LTR_Pao 27917 28063 40 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 17440 17592 75 + . . scaffold962 GLEAN mRNA 17446 17832 0.999586 + . ID=CGI_10027631; scaffold266 WUBlastX LINE_L2 181841 182116 45 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1-L2 399883 400065 73 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold506 WUBlastX LINE_CR1-L2 265617 265859 36 - . . scaffold506 GLEAN mRNA 249863 266288 0.986132 + . ID=CGI_10019263; scaffold42040 WUBlastX LINE_L2 117317 117547 61 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L2 695906 696439 82 + . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LINE_L2 44122 44307 86 - . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LTR_Gypsy 87006 87404 79 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_Gypsy 821820 822686 38 - . . scaffold1583 GLEAN mRNA 822207 822614 0.999365 - . ID=CGI_10025843; scaffold1583 WUBlastX LTR_Gypsy 821820 822686 38 - . . scaffold1583 GLEAN mRNA 822649 823883 0.593542 - . ID=CGI_10025844; scaffold32470 WUBlastX LTR_Gypsy 1269 1460 108 - . . scaffold32470 GLEAN mRNA 176 4292 1 + . ID=CGI_10000898; scaffold1772 WUBlastX LINE_L2 31739 31798 42 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 236801 237094 54 - . . scaffold479 GLEAN mRNA 237067 237345 0.618241 - . ID=CGI_10015696; scaffold1777 WUBlastX LTR_Ngaro 8712 8855 26 + . . scaffold1777 GLEAN mRNA 5363 10416 0.999547 + . ID=CGI_10003152; scaffold1009 WUBlastX LTR_Ngaro 1346194 1346238 20 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_R1 31558 31722 27 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold814 WUBlastX LTR_Ngaro 88569 88820 79 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LTR_DIRS 318644 318871 61 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold664 WUBlastX LTR_Gypsy 317513 317545 30 + . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 57060 57521 31 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 548534 549313 43 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; C8543 WUBlastX LTR_Gypsy 6 83 54 - . . . . . -1 -1 -1 . . . C8543 WUBlastX LTR_Gypsy 85 138 23 - . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX DNA_Harbinger 29635 29706 41 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 51949 52284 85 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_I 203033 203578 69 - . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX DNA_IS4EU 48225 48404 70 + . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX DNA_IS4EU 23811 24014 21 + . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX DNA_IS4EU 24032 24244 43 + . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_IS4EU 62627 62713 20 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_IS4EU 62927 63112 42 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_L1 17554 17754 61 + . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1 171380 171481 26 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LINE_L1 111587 112387 78 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L1 1142064 1142189 21 + . . scaffold1024 GLEAN mRNA 1112754 1144737 0.704183 + . ID=CGI_10028569; scaffold753 WUBlastX DNA_MuDR 115797 116093 90 + . . . . . -1 -1 -1 . . . scaffold716 WUBlastX DNA_Merlin 347961 348302 45 + . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LTR_Gypsy 102128 102652 37 + . . scaffold1769 GLEAN mRNA 102392 103552 0.503348 + . ID=CGI_10009238; scaffold32202 WUBlastX LINE_RTE-BovB 6754 7011 84 - . . . . . -1 -1 -1 . . . C31346 WUBlastX DNA_TcMar-Marin 4229 4300 27 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Ngaro 288104 288358 75 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold1785 WUBlastX LINE_RTE-X 165158 165310 66 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-X 230143 230199 22 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_RTE-X 397082 397408 72 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LINE_RTE-X 92163 92396 60 - . . . . . -1 -1 -1 . . . scaffold35014 WUBlastX DNA_PiggyBac 14617 14799 77 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold1578 WUBlastX DNA_PiggyBac 40835 41122 57 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 53229 53552 60 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold43064 WUBlastX LINE_RTE-BovB 21274 21432 42 - . . scaffold43064 GLEAN mRNA 2241 22972 0.292417 + . ID=CGI_10008625; scaffold873 WUBlastX LINE_Proto2 370094 370381 77 - . . scaffold873 GLEAN mRNA 370257 378125 0.461608 + . ID=CGI_10014438; scaffold1189 WUBlastX LINE_RTE-BovB 213505 213678 26 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_RTE-X 112149 112229 29 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-X 1061698 1061820 86 - . . . . . -1 -1 -1 . . . scaffold696 WUBlastX LINE_RTE-X 20720 20917 42 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Gypsy 1202667 1202960 32 - . . scaffold433 GLEAN mRNA 1202502 1202765 0.999995 - . ID=CGI_10027118; scaffold950 WUBlastX DNA_TcMar-Pogo 107705 108073 81 - . . scaffold950 GLEAN mRNA 86388 112962 1 - . ID=CGI_10022920; scaffold1738 WUBlastX DNA_Sola 21322 21615 61 + . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L1-Tx1 346474 346827 28 + . . scaffold786 GLEAN mRNA 340138 347810 1 + . ID=CGI_10013708; scaffold70 WUBlastX LINE_L1-Tx1 591155 591316 23 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L1-Tx1 894052 894363 59 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L1-Tx1 256313 256399 30 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold1189 WUBlastX LINE_CR1-L2 847758 848105 64 - . . scaffold1189 GLEAN mRNA 845721 854724 0.805708 + . ID=CGI_10023837; scaffold1189 WUBlastX LINE_CR1-L2 848087 848128 42 - . . scaffold1189 GLEAN mRNA 845721 854724 0.805708 + . ID=CGI_10023837; scaffold422 WUBlastX LINE_L2 361281 361757 90 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Pao 30411 30674 30 + . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold1154 WUBlastX LTR_Copia 497229 498185 46 - . . . . . -1 -1 -1 . . . C15226 WUBlastX LTR_Gypsy 31 285 93 - . . . . . -1 -1 -1 . . . scaffold564 WUBlastX DNA_TcMar-Marin 372742 373041 41 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_CR1 513509 513808 54 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 509481 509774 83 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LTR_Ngaro 459547 459786 70 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_L2 12938 13330 44 - . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_L2 29767 30036 74 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Gypsy-Cigr 296576 296746 54 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Gypsy-Cigr 1173313 1173768 55 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy-Cigr 272011 272250 120 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_IS4EU 582479 582766 90 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_IS4EU 1403383 1403838 33 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_IS4EU 600428 600553 38 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_IS4EU 48555 48782 35 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX DNA_hAT-hATw 27958 28119 23 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX DNA_hAT-hATw 3634 4122 43 - . . scaffold12 GLEAN mRNA 533 12832 0.970295 + . ID=CGI_10018011; scaffold542 WUBlastX LINE_R2-Hero 397701 397895 52 - . . . . . -1 -1 -1 . . . scaffold37850 WUBlastX LTR_Gypsy 20562 20696 20 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L2 365564 365998 71 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 541916 541996 20 - . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX DNA_TcMar-Fot1 76257 76562 69 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_Penelope 126516 127016 69 + . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX DNA_TcMar-Tc1 27875 28117 89 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L1 28012 28338 49 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L1 669258 669542 82 - . . scaffold625 GLEAN mRNA 660953 675922 0.820405 - . ID=CGI_10023430; scaffold1821 WUBlastX LINE_L1 171478 171843 44 + . . scaffold1821 GLEAN mRNA 167929 177659 0.681651 - . ID=CGI_10011291; scaffold331 WUBlastX LINE_L1 23836 24357 57 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX DNA_Kolobok-Hyd 206913 207302 29 + . . scaffold853 GLEAN mRNA 204099 212863 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 206913 207302 29 + . . scaffold853 GLEAN mRNA 206619 210945 0.253956 + . ID=CGI_10017495; scaffold3 WUBlastX DNA_Kolobok-Hyd 290385 290438 25 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold189 WUBlastX LINE_RTE-BovB 311853 312329 82 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LINE_RTE-X 316620 316925 57 - . . scaffold1719 GLEAN mRNA 297152 319693 0.889105 - . ID=CGI_10014286; scaffold1100 WUBlastX LTR_Gypsy 99185 99691 31 - . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX DNA_Maverick 36664 37029 90 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_Maverick 643748 643960 79 - . . scaffold343 GLEAN mRNA 643952 644134 0.514976 + . ID=CGI_10021772; scaffold343 WUBlastX DNA_Maverick 643748 643960 79 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold695 WUBlastX LINE_RTE-X 804935 805273 40 + . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_RTE-X 50922 51146 22 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_RTE-X 78443 78601 68 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_RTE-X 570042 570422 37 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_RTE-X 334219 334761 32 - . . scaffold1860 GLEAN mRNA 329243 343922 0.916009 + . ID=CGI_10013950; scaffold43932 WUBlastX LINE_RTE-X 178351 178890 29 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LINE_RTE-X 1075 1140 28 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_Sola 198210 198794 39 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Gypsy 582519 582599 42 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_L1 31698 31778 33 - . . . . . -1 -1 -1 . . . scaffold984 WUBlastX LINE_L1-Tx1 3347 3826 63 + . . scaffold984 GLEAN mRNA 2190 6762 0.999998 + . ID=CGI_10000576; C29260 WUBlastX LINE_L1-Tx1 3738 4004 57 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_L1-Tx1 463461 463631 50 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_L1-Tx1 463939 464061 22 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 466970 467248 53 - . . . . . -1 -1 -1 . . . scaffold193 WUBlastX LINE_L1-Tx1 228032 228142 38 + . . scaffold193 GLEAN mRNA 225142 231463 0.959713 + . ID=CGI_10015231; scaffold802 WUBlastX LINE_L1-Tx1 141020 141229 37 + . . scaffold802 GLEAN mRNA 137512 196873 0.499283 - . ID=CGI_10015727; scaffold501 WUBlastX DNA_TcMar-Tc1 1288345 1288719 95 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_L1-Tx1 150265 150369 24 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 132958 133449 36 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX DNA_TcMar-Tc1 569576 569851 74 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Pao 202099 202266 29 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_CR1 549664 550203 71 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_CR1-L2 135844 136101 94 + . . . . . -1 -1 -1 . . . C15342 WUBlastX LINE_CR1-L2 14 271 65 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L2 53394 53564 21 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold41794 WUBlastX LTR_Ngaro 122109 122597 56 - . . . . . -1 -1 -1 . . . scaffold40196 WUBlastX LTR_Gypsy 58521 58997 76 + . . . . . -1 -1 -1 . . . C17636 WUBlastX LTR_Gypsy 226 507 116 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy 174039 174404 31 - . . . . . -1 -1 -1 . . . C31510 WUBlastX DNA_Harbinger 6532 6846 60 + . . C31510 GLEAN mRNA 6475 7785 0.999797 + . ID=CGI_10000758; scaffold506 WUBlastX DNA_Harbinger 85 204 87 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX DNA_IS4EU 173544 173753 62 + . . scaffold1678 GLEAN mRNA 153695 176010 0.290685 - . ID=CGI_10010386; scaffold1772 WUBlastX DNA_IS4EU 16450 17163 81 - . . scaffold1772 GLEAN mRNA 15531 17685 0.648545 - . ID=CGI_10014804; scaffold1172 WUBlastX DNA_IS4EU 123493 123570 28 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_Penelope 185003 185335 75 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_P 185104 185424 92 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_P 233620 233940 92 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_L2 195767 195895 22 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_L2 607601 608017 80 + . . . . . -1 -1 -1 . . . scaffold1848 WUBlastX LINE_RTE-X 117541 117792 54 - . . . . . -1 -1 -1 . . . scaffold41164 WUBlastX LINE_RTE-X 86818 87090 76 + . . scaffold41164 GLEAN mRNA 83753 104051 0.95986 - . ID=CGI_10004764; scaffold58 WUBlastX LINE_RTE-X 480364 480768 83 - . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_RTE-X 162840 163220 62 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-X 896378 896773 57 + . . . . . -1 -1 -1 . . . scaffold42892 WUBlastX LINE_RTE-X 2281 2358 39 - . . . . . -1 -1 -1 . . . scaffold42892 WUBlastX LINE_RTE-X 2364 2897 25 - . . . . . -1 -1 -1 . . . scaffold37092 WUBlastX DNA_Maverick 7422 7949 47 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_Maverick 49045 49197 60 - . . scaffold733 GLEAN mRNA 37672 49158 0.939016 - . ID=CGI_10025863; scaffold1869 WUBlastX DNA_PiggyBac 176292 176405 33 + . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_RTE-BovB 109340 109591 47 + . . scaffold1253 GLEAN mRNA 102918 110431 0.634382 - . ID=CGI_10004823; scaffold801 WUBlastX LINE_RTE-BovB 540885 541301 69 + . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_DIRS 78595 78810 28 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX DNA_Sola 11065 11325 42 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Tc1 259247 259423 25 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_TcMar-Tc2 603470 603703 31 + . . . . . -1 -1 -1 . . . scaffold268 WUBlastX LINE_CR1-L2 55588 55704 23 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L2 184335 184736 90 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Pao 36250 36432 119 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_Rex-Babar 301481 302092 32 + . . . . . -1 -1 -1 . . . scaffold38498 WUBlastX DNA_Crypton 2478 3149 57 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX DNA_Crypton 599684 600181 24 + . . scaffold443 GLEAN mRNA 597664 607572 1 - . ID=CGI_10022780; scaffold749 WUBlastX DNA_Crypton 3413 3916 73 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 2851 3231 78 + . . . . . -1 -1 -1 . . . scaffold617 WUBlastX LTR_DIRS 61770 62441 72 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Ngaro 31489 31899 60 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold150 WUBlastX LTR_Gypsy 824116 825039 109 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy 159073 159648 96 + . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX LTR_Gypsy 182078 182314 133 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LTR_Gypsy 774325 774453 28 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Gypsy 918083 918184 21 + . . . . . -1 -1 -1 . . . C35760 WUBlastX LTR_Gypsy 13323 13673 99 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX DNA_IS4EU 141307 141423 36 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_IS4EU 853282 853659 110 + . . . . . -1 -1 -1 . . . scaffold44064 WUBlastX DNA_Harbinger 3358 3543 66 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Gypsy 251392 252036 80 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold576 WUBlastX LTR_Gypsy 31997 32065 39 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LTR_Gypsy 618177 618968 66 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold274 WUBlastX DNA_P 414076 414162 21 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 82634 82888 55 - . . . . . -1 -1 -1 . . . scaffold37844 WUBlastX LINE_Penelope 5656 5937 38 - . . scaffold37844 GLEAN mRNA 2684 16247 0.999999 - . ID=CGI_10002508; scaffold1671 WUBlastX DNA_Merlin 12776 12934 34 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_L1-Tx1 562470 562865 39 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1 632655 632795 61 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1 319376 319507 28 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_PiggyBac 241375 241572 63 - . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX DNA_PiggyBac 92481 92597 32 - . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 34702 34812 53 - . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX LINE_R2 45442 45498 24 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; scaffold42 WUBlastX LINE_RTE-X 205807 206178 51 - . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold983 WUBlastX LINE_RTE-X 214573 214872 96 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-X 947542 947871 55 + . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LINE_RTE-X 178682 179020 103 - . . . . . -1 -1 -1 . . . scaffold41824 WUBlastX LINE_RTE-X 58960 59169 91 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 517610 517780 83 - . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 517610 517780 83 - . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold40982 WUBlastX LTR_DIRS 83393 84328 40 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Sola 326538 326624 54 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_TcMar-Tc2 258065 258676 77 - . . scaffold102 GLEAN mRNA 251987 267295 0.910885 - . ID=CGI_10028430; scaffold631 WUBlastX DNA_TcMar-Tc1 72594 73007 64 - . . . . . -1 -1 -1 . . . scaffold1643 WUBlastX LINE_L1-Tx1 136086 136511 66 - . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LINE_L1-Tx1 38926 39072 22 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_L1-Tx1 21287 21574 82 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L1-Tx1 270772 270897 37 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LINE_L1-Tx1 143408 143842 64 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_PiggyBac 389843 389983 44 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_PiggyBac 391466 391588 44 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1074443 1074496 25 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold6 WUBlastX LTR_Pao 78583 78939 51 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LTR_Ngaro 128056 128715 97 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LINE_CR1-L2 349432 349596 70 - . . scaffold1849 GLEAN mRNA 345198 370191 0.662499 + . ID=CGI_10015920; scaffold962 WUBlastX LINE_CR1-L2 1125477 1125902 110 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_CR1-L2 150910 151290 97 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_CR1 185523 185804 109 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1200 WUBlastX LINE_L2 102613 102828 40 + . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_CR1-L2 100746 100991 24 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold1097 WUBlastX LTR_Gypsy 78824 79507 95 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Gypsy 134121 135038 65 - . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy-Cigr 63215 63703 68 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1352 WUBlastX LTR_Gypsy 84958 85335 54 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 227438 227854 23 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Gypsy 35580 36029 112 - . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LINE_L2 7376 7840 47 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 559394 559447 22 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 179720 179902 42 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold406 WUBlastX LTR_Gypsy 180323 181393 81 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Gypsy 273262 273465 23 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX DNA_Harbinger 465220 465531 92 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_IS4EU 68299 68433 45 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold42030 WUBlastX LINE_CR1 78914 79243 80 + . . scaffold42030 GLEAN mRNA 73599 103190 0.98897 + . ID=CGI_10006046; scaffold401 WUBlastX DNA_TcMar-Tc1 9882 10649 83 + . . scaffold401 GLEAN mRNA 8376 27637 0.998672 + . ID=CGI_10006983; scaffold960 WUBlastX LINE_L1 332846 333469 80 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 470542 470874 43 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold338 WUBlastX LINE_L1 155498 155635 82 - . . . . . -1 -1 -1 . . . scaffold487 WUBlastX DNA_Kolobok 441998 442141 95 + . . scaffold487 GLEAN mRNA 439996 447135 0.39713 - . ID=CGI_10017054; scaffold37740 WUBlastX DNA_MuDR 9773 9880 89 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold1698 WUBlastX LINE_Penelope 558800 559120 82 - . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold274 WUBlastX LINE_Penelope 34097 34417 89 - . . scaffold274 GLEAN mRNA 31807 34983 0.990803 + . ID=CGI_10017008; scaffold1262 WUBlastX LTR_Gypsy 543263 543577 31 + . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX LINE_L2 57119 57391 29 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L2 34090 34206 22 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold1673 WUBlastX LINE_L1 99037 99915 64 + . . scaffold1673 GLEAN mRNA 58935 108305 0.828275 + . ID=CGI_10013571; scaffold465 WUBlastX LINE_Penelope 83349 83873 62 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_RTE-X 308872 309369 40 + . . scaffold1863 GLEAN mRNA 292710 321956 0.398552 - . ID=CGI_10016693; scaffold31538 WUBlastX DNA_Maverick 5215 5592 105 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold288 WUBlastX LINE_RTE-BovB 208911 209609 71 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold37662 WUBlastX DNA_TcMar-Tigge 28565 28747 26 - . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX DNA_Sola 15770 16027 70 + . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX DNA_Sola 16364 16516 61 + . . . . . -1 -1 -1 . . . C31366 WUBlastX LINE_L1-Tx1 5311 5805 46 + . . C31366 GLEAN mRNA 393 6299 0.999547 - . ID=CGI_10000739; scaffold1132 WUBlastX DNA_TcMar-Tc1 210455 210826 92 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold169 WUBlastX LINE_L1-Tx1 29423 29545 21 + . . . . . -1 -1 -1 . . . scaffold39592 WUBlastX LINE_L1-Tx1 43343 43501 30 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_L1-Tx1 236099 236272 115 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_TcMar-Tc1 210851 211141 72 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Tc1 877629 877904 111 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_TcMar-Tc1 470109 470342 21 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LINE_CR1 5861 6082 79 + . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_L2 45197 45526 114 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_CR1 125492 125725 122 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_DIRS 767882 768643 69 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Ngaro 467463 467582 41 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; C32516 WUBlastX LTR_Ngaro 7774 8208 137 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1346295 1346606 91 + . . . . . -1 -1 -1 . . . scaffold734 WUBlastX LINE_L2 20076 20975 28 - . . scaffold734 GLEAN mRNA 15567 24465 0.477862 - . ID=CGI_10003361; scaffold1214 WUBlastX LTR_Ngaro 337629 337817 60 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_DIRS 696963 697226 111 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Ngaro 299337 299477 132 - . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX DNA_hAT-Tip100 24283 24675 103 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX DNA_Harbinger 130042 130359 74 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy 436879 437241 152 + . . . . . -1 -1 -1 . . . scaffold41660 WUBlastX LINE_L1 124057 124572 27 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_Penelope 331473 332000 88 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1 571080 571355 40 + . . . . . -1 -1 -1 . . . scaffold40186 WUBlastX LINE_L1-Tx1 83534 83962 53 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1 494251 494967 68 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_L1-Tx1 295493 295618 56 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_RTE-BovB 419311 419559 94 - . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_RTE-BovB 260629 260985 122 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX DNA_Maverick 342960 343067 63 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 510630 511331 101 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX DNA_Sola 530173 530778 104 + . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX DNA_TcMar-Tc1 19671 20048 64 + . . . . . -1 -1 -1 . . . C32516 WUBlastX LTR_Ngaro 7747 8439 118 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX DNA_TcMar-Tc1 136305 136361 28 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_TcMar-Tc1 470910 471107 94 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L2 13771 14067 22 + . . . . . -1 -1 -1 . . . scaffold37426 WUBlastX LTR_DIRS 5222 5725 78 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 499585 499818 79 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 500331 500441 48 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_DIRS 14768 15553 90 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1686993 1687229 34 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_DIRS 360334 360450 41 - . . scaffold621 GLEAN mRNA 360060 382748 0.996965 - . ID=CGI_10017688; scaffold1740 WUBlastX LTR_Gypsy 51695 52180 123 + . . scaffold1740 GLEAN mRNA 47863 57861 0.885028 - . ID=CGI_10011443; C30872 WUBlastX LTR_Gypsy 2 541 132 - . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX LTR_Gypsy 18057 18293 29 - . . scaffold1884 GLEAN mRNA 17991 22167 1 - . ID=CGI_10012006; scaffold240 WUBlastX LTR_Gypsy 124572 125213 107 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 62756 62854 21 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_En-Spm 254835 255038 24 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 7606 7902 107 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 7998 8186 23 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 653577 653774 28 - . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX DNA_Harbinger 9484 9558 23 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Harbinger 189796 190023 40 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Harbinger 190455 190508 23 + . . . . . -1 -1 -1 . . . C25336 WUBlastX DNA_Harbinger 12 149 35 - . . . . . -1 -1 -1 . . . C25336 WUBlastX DNA_Harbinger 261 1007 69 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_R2-Hero 571899 572093 151 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX DNA_Helitron 183077 183328 78 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_L1 146258 147028 42 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_Penelope 348035 348586 102 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_MuDR 795999 796262 118 - . . scaffold1301 GLEAN mRNA 795655 798380 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 795999 796262 118 - . . scaffold1301 GLEAN mRNA 781075 819646 0.518044 + . ID=CGI_10027743; scaffold601 WUBlastX LINE_Penelope 936201 936830 104 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L2 76866 77123 58 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX DNA_TcMar-Marin 166374 166499 27 + . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX LINE_RTE-BovB 49192 50436 59 - . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX LINE_RTE-BovB 50584 50682 27 - . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_RTE-X 42410 42748 88 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 1190183 1190257 49 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold39014 WUBlastX LINE_RTE-X 52278 52574 67 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-BovB 796796 796918 56 - . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LINE_RTE-X 318868 318981 42 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-X 319046 319144 26 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold162 WUBlastX LINE_RTE-X 252582 252872 98 - . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX LTR_Ngaro 36008 36427 125 + . . . . . -1 -1 -1 . . . C32728 WUBlastX DNA_Sola 3834 4094 100 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LINE_L1-Tx1 163457 163630 87 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold980 WUBlastX LINE_L1-Tx1 258198 258689 85 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LINE_L1-Tx1 144144 144581 54 - . . . . . -1 -1 -1 . . . scaffold1181 WUBlastX LINE_CR1 108957 109535 90 + . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_CR1-L2 164854 165315 91 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold719 WUBlastX LTR_Pao 352263 352724 128 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold562 WUBlastX LTR_Gypsy-Cigr 204836 205159 107 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy-Cigr 1277510 1277977 149 - . . scaffold86 GLEAN mRNA 1231261 1279248 0.605603 + . ID=CGI_10028197; scaffold126 WUBlastX LTR_Gypsy 539221 540165 132 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1342762 1343004 47 + . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LTR_Ngaro 67219 67590 133 + . . . . . -1 -1 -1 . . . scaffold1497 WUBlastX LINE_L2 52722 52967 56 + . . . . . -1 -1 -1 . . . scaffold37010 WUBlastX LTR_DIRS 30964 31089 49 - . . scaffold37010 GLEAN mRNA 9826 38663 0.529667 + . ID=CGI_10002196; scaffold975 WUBlastX LTR_DIRS 349372 349764 101 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 166335 166466 52 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold472 WUBlastX LINE_R2-Hero 76755 76883 61 + . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX DNA_hAT-Tip100 17273 17422 24 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX DNA_IS4EU 211526 211885 90 + . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; C29244 WUBlastX DNA_TcMar-Marin 584 904 110 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_R2-Hero 59413 59607 84 - . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_IS4EU 188425 189375 127 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Harbinger 111630 111686 25 + . . scaffold317 GLEAN mRNA 109364 113529 0.986804 - . ID=CGI_10019343; scaffold317 WUBlastX DNA_Harbinger 111682 111912 110 + . . scaffold317 GLEAN mRNA 109364 113529 0.986804 - . ID=CGI_10019343; scaffold461 WUBlastX LTR_Gypsy 122054 122257 83 - . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LTR_Gypsy 39384 40586 112 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_Gypsy 160975 161472 161 - . . scaffold1321 GLEAN mRNA 144678 167818 0.544485 + . ID=CGI_10010664; scaffold42634 WUBlastX DNA_TcMar-Fot1 150256 150834 137 + . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX DNA_TcMar-Tc1 69729 69800 37 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L1 483360 483686 82 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold1656 WUBlastX LINE_Penelope 101910 102497 91 - . . . . . -1 -1 -1 . . . C24582 WUBlastX LINE_L1-Tx1 78 542 95 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LINE_RTE-X 298199 298276 22 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 262691 262759 38 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_DIRS 1006641 1006916 66 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_DIRS 1007055 1007150 43 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_TcMar-Tc1 293594 294151 21 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_L1-Tx1 41557 42042 59 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_L1 291285 292088 55 + . . . . . -1 -1 -1 . . . scaffold38672 WUBlastX LTR_Gypsy-Cigr 42505 43053 134 - . . . . . -1 -1 -1 . . . scaffold41998 WUBlastX LINE_CR1 22806 22964 26 - . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_CR1-L2 631954 632277 127 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_L2 293771 293842 20 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold1014 WUBlastX DNA_Crypton 536815 537279 134 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Crypton 767182 767460 29 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Crypton 767538 767795 46 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 142197 142259 30 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 20646 21155 93 + . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 130588 130788 65 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy 37786 38325 109 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 526733 527221 161 - . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LTR_Gypsy 3099 3911 134 + . . scaffold43696 GLEAN mRNA 2631 16978 0.0834374 + . ID=CGI_10011797; scaffold38066 WUBlastX DNA_hAT-Ac 1811 1897 35 - . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_R2-Hero 76819 76998 58 + . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_R2-Hero 77295 78341 30 + . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX LINE_L1-Tx1 26079 26480 127 - . . scaffold38066 GLEAN mRNA 23087 36782 1 + . ID=CGI_10002612; scaffold36398 WUBlastX LINE_Penelope 2191 2382 41 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX DNA_MuDR 507521 507964 89 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Ngaro 80747 81298 130 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold1470 WUBlastX LTR_Ngaro 50885 51115 97 + . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LTR_Ngaro 51147 51323 35 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX DNA_TcMar-Fot1 211713 211940 49 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LINE_RTE-X 44440 44616 53 - . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LINE_RTE-X 25156 25260 28 + . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LINE_RTE-X 26036 26398 132 + . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_RTE-X 147156 147485 142 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX DNA_Maverick 103295 103717 72 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1074859 1075104 82 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold42880 WUBlastX DNA_PiggyBac 112207 112722 40 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 137673 139004 108 - . . scaffold1480 GLEAN mRNA 131830 138953 0.535981 - . ID=CGI_10008637; scaffold163 WUBlastX LINE_RTE-BovB 61056 61202 62 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX DNA_Maverick 89946 90017 31 + . . . . . -1 -1 -1 . . . C28272 WUBlastX DNA_Sola 1329 1703 20 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 187849 188145 38 + . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_Gypsy 119401 120396 94 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 647572 647910 168 + . . scaffold678 GLEAN mRNA 636648 664664 0.986036 - . ID=CGI_10026369; scaffold313 WUBlastX LINE_RTE-X 452754 454736 775 + . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LTR_DIRS 106159 107592 825 + . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LTR_DIRS 107574 107783 84 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LTR_Ngaro 163565 164266 418 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1 57135 57839 282 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1 58032 58205 105 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1 59106 59309 58 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 152569 152874 170 + . . . . . -1 -1 -1 . . . scaffold39470 WUBlastX LINE_L2 44078 44596 49 + . . scaffold39470 GLEAN mRNA 37603 51823 0.681651 + . ID=CGI_10003380; scaffold36118 WUBlastX LINE_RTE-X 5882 7312 208 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 457856 458218 94 - . . . . . -1 -1 -1 . . . scaffold467 WUBlastX LINE_RTE-X 44910 45185 49 + . . . . . -1 -1 -1 . . . scaffold467 WUBlastX LINE_RTE-X 45314 47065 399 + . . . . . -1 -1 -1 . . . scaffold467 WUBlastX LINE_RTE-X 47071 47787 240 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy 83356 83460 89 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold358 WUBlastX DNA_Merlin 90248 90658 148 - . . . . . -1 -1 -1 . . . scaffold41852 WUBlastX LINE_L1 1087 1539 60 + . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LINE_L2 82897 83271 76 + . . . . . -1 -1 -1 . . . scaffold633 WUBlastX LINE_L2 56822 57517 117 + . . scaffold633 GLEAN mRNA 49171 62840 0.82948 + . ID=CGI_10004269; scaffold1286 WUBlastX LINE_CR1 114432 114557 95 - . . scaffold1286 GLEAN mRNA 98601 123345 0.396375 - . ID=CGI_10009514; scaffold36034 WUBlastX LINE_L2 13890 14552 117 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_CR1-L2 1351926 1352339 82 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 344503 344856 58 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold1149 WUBlastX LINE_L2 561666 562829 68 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Ngaro 31684 31899 127 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Ngaro 31898 32194 31 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Ngaro 144704 145048 134 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold672 WUBlastX LTR_Gypsy 154044 154304 42 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 472599 472691 51 + . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX DNA_TcMar-Tc1 3096 3659 128 + . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold34596 WUBlastX DNA_TcMar-Tc1 6852 7226 108 + . . scaffold34596 GLEAN mRNA 238 15197 0.650923 - . ID=CGI_10001323; scaffold237 WUBlastX LINE_L2 591397 591603 29 + . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_IS4EU 61034 61225 53 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_IS4EU 62930 63040 47 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 349180 349665 58 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_RTE-X 127762 128235 86 + . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX LINE_RTE-X 150025 150660 88 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_RTE-X 260129 260698 133 + . . scaffold1160 GLEAN mRNA 253181 264437 0.999999 - . ID=CGI_10015353; scaffold1314 WUBlastX DNA_Sola 25258 25608 48 + . . scaffold1314 GLEAN mRNA 24248 26243 0.657792 + . ID=CGI_10009303; scaffold1314 WUBlastX DNA_Sola 25747 25875 38 + . . scaffold1314 GLEAN mRNA 24248 26243 0.657792 + . ID=CGI_10009303; scaffold443 WUBlastX LTR_ERV1 101005 101406 25 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc1 222436 222534 46 - . . scaffold1024 GLEAN mRNA 191784 246938 0.99909 + . ID=CGI_10028528; scaffold408 WUBlastX LTR_Pao 255683 255820 87 + . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1-Tx1 14551 15027 92 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 244543 245031 290 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 241573 241980 99 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1039608 1040237 418 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LTR_Ngaro 91780 92553 509 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold1149 WUBlastX LTR_Gypsy 452516 454513 487 - . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX LTR_Pao 20958 22133 1135 + . . scaffold1373 GLEAN mRNA 14147 30425 0.488375 - . ID=CGI_10007904; scaffold1373 WUBlastX LTR_Pao 20958 22133 1135 + . . scaffold1373 GLEAN mRNA 15305 23957 0.999368 + . ID=CGI_10007905; scaffold343 WUBlastX LINE_R2-Hero 369443 372046 1032 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Pao 11747 12061 154 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_L2 372920 373162 20 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold1403 WUBlastX LTR_Gypsy 597858 598277 40 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_hAT-Tip100 26204 26365 72 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_hAT-Tip100 26547 26615 33 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_hAT-Tip100 26632 26808 106 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_hAT-Tip100 123443 124099 105 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Gypsy 369723 369824 33 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_Ngaro 78542 79138 132 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 699681 699842 93 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Crypton 758321 759307 88 + . . scaffold313 GLEAN mRNA 734660 773846 0.452737 + . ID=CGI_10026622; scaffold489 WUBlastX DNA_Crypton 535419 535820 118 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX DNA_Crypton 244284 244469 78 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX DNA_Crypton 244472 244504 21 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_hAT-hATw 134961 135416 105 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX DNA_IS4EU 413794 414048 48 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Gypsy 445539 445625 29 + . . . . . -1 -1 -1 . . . scaffold33588 WUBlastX LTR_Gypsy 13606 13836 98 + . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_L2 194269 195423 87 + . . scaffold44098 GLEAN mRNA 188555 213785 0.544557 + . ID=CGI_10017708; scaffold38284 WUBlastX LINE_L1 45155 45217 26 - . . . . . -1 -1 -1 . . . scaffold674 WUBlastX LTR_Ngaro 12166 12651 170 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold448 WUBlastX LTR_Ngaro 584060 584656 104 + . . . . . -1 -1 -1 . . . scaffold1676 WUBlastX DNA_TcMar-Tc1 11851 12165 35 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 630078 630335 60 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LTR_DIRS 467883 468206 145 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LTR_DIRS 468284 468337 21 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Ngaro 254915 255649 114 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy 113840 114316 127 - . . . . . -1 -1 -1 . . . scaffold37422 WUBlastX DNA_TcMar-Tc1 2172 2381 46 - . . . . . -1 -1 -1 . . . scaffold38756 WUBlastX LINE_L1-Tx1 35289 35642 72 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LTR_Gypsy 222228 222368 69 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 123950 124180 137 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1-Tx1 153983 154510 93 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1-Tx1 155913 156713 163 - . . . . . -1 -1 -1 . . . scaffold38498 WUBlastX LTR_Ngaro 37331 38401 754 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_RTE-BovB 582583 583917 1115 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_Gypsy-Troyk 113626 115584 1085 - . . scaffold492 GLEAN mRNA 113593 113832 0.695642 - . ID=CGI_10024810; scaffold513 WUBlastX LTR_Pao 9180 9332 41 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold1623 WUBlastX LTR_Gypsy 53672 54499 261 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX LTR_Gypsy 54826 55680 633 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 223708 224433 282 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 224433 225776 430 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1780 WUBlastX LINE_RTE-BovB 111588 112832 981 + . . scaffold1780 GLEAN mRNA 107008 115035 0.543 - . ID=CGI_10014549; scaffold1417 WUBlastX DNA_Harbinger 100275 100349 73 - . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX DNA_Harbinger 100337 100918 591 - . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX DNA_Harbinger 100861 101526 493 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Pao 100017 101393 1244 + . . . . . -1 -1 -1 . . . scaffold36278 WUBlastX DNA_PiggyBac 26782 26844 41 - . . scaffold36278 GLEAN mRNA 22300 32002 0.651135 - . ID=CGI_10001848; scaffold32 WUBlastX DNA_PiggyBac 139014 139400 130 - . . . . . -1 -1 -1 . . . C22494 WUBlastX LTR_Pao 18 353 100 - . . . . . -1 -1 -1 . . . C32228 WUBlastX LTR_Copia 6154 6255 24 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_L2 34454 34987 112 + . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX DNA_En-Spm 120385 121149 142 + . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX LTR_Ngaro 17701 18027 66 + . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX LTR_Ngaro 18423 18596 73 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LTR_DIRS 58458 58946 80 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_Harbinger 220617 220979 170 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX DNA_Harbinger 525609 525878 98 - . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LTR_Gypsy 2188 3279 145 - . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_hAT-Tip100 174359 174412 29 - . . . . . -1 -1 -1 . . . scaffold219 WUBlastX DNA_Harbinger 9999 10436 148 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_TcMar-Tc1 548646 548903 35 - . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LTR_Ngaro 171860 172369 155 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold178 WUBlastX LINE_Penelope 104099 104686 69 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold500 WUBlastX LINE_L1 100692 101360 138 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L1 478234 478290 28 - . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX DNA_Kolobok 67073 67312 133 - . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX DNA_Kolobok 67787 68047 25 - . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1174 WUBlastX DNA_Kolobok 1059577 1059819 146 + . . . . . -1 -1 -1 . . . scaffold39958 WUBlastX LINE_L1-Tx1 81450 81968 135 - . . . . . -1 -1 -1 . . . scaffold42348 WUBlastX LINE_RTE-X 101933 102739 84 - . . scaffold42348 GLEAN mRNA 96568 107151 0.643244 - . ID=CGI_10006683; scaffold90 WUBlastX LINE_RTE-X 317539 317760 36 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LTR_Gypsy 33965 34645 187 + . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX LINE_L1-Tx1 35659 35988 124 - . . scaffold42946 GLEAN mRNA 33025 55751 0.459933 + . ID=CGI_10008170; scaffold39880 WUBlastX LINE_L1-Tx1 41818 42249 157 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1-Tx1 17092 18060 75 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LTR_DIRS 82728 84389 1217 - . . scaffold698 GLEAN mRNA 81586 93981 0.592995 - . ID=CGI_10020727; C28348 WUBlastX LTR_Gypsy 4200 5474 1191 + . . . . . -1 -1 -1 . . . scaffold39976 WUBlastX LTR_Pao 45201 45941 468 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1-Tx1 559555 559911 52 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold1267 WUBlastX LTR_Pao 359342 360340 355 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Gypsy-Cigr 497127 498959 303 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Gypsy-Cigr 1040166 1040771 571 + . . . . . -1 -1 -1 . . . scaffold1566 WUBlastX LTR_Pao 7744 8058 90 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_CR1 172938 173222 186 - . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_CR1 17127 17765 150 - . . . . . -1 -1 -1 . . . scaffold30716 WUBlastX LINE_L2 361 441 66 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy-Cigr 343898 344644 183 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy-Cigr 213167 213703 192 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LTR_Gypsy 4050 4907 152 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX RC_Helitron 537272 537376 35 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 149802 149927 20 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_I-Nimb 553726 553836 29 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 16677 16856 122 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_Penelope 190243 191052 150 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_Penelope 59756 60031 23 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold1024 WUBlastX LTR_Ngaro 1701971 1702258 180 + . . scaffold1024 GLEAN mRNA 1693215 1725420 0.440752 - . ID=CGI_10028584; scaffold43494 WUBlastX LTR_Ngaro 53986 54672 74 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_RTE-BovB 83398 83589 154 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_RTE-X 6598 7371 136 + . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 350315 350533 27 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_RTE-X 393741 394193 173 - . . scaffold43 GLEAN mRNA 380222 414471 0.256408 - . ID=CGI_10021355; scaffold210 WUBlastX LINE_RTE-X 141237 141650 72 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold935 WUBlastX LINE_RTE-BovB 120020 120463 153 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Pao 572484 572876 55 - . . . . . -1 -1 -1 . . . C33534 WUBlastX LINE_CR1-L2 11037 11489 162 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy-Cigr 11989 12732 382 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Pao 443701 444048 313 + . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LTR_Gypsy 247365 248423 929 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1095115 1097784 1400 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold1564 WUBlastX LINE_CR1-L2 4446 5186 103 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_CR1-L2 291207 291947 103 - . . . . . -1 -1 -1 . . . scaffold1501 WUBlastX LTR_Gypsy-Cigr 55283 55579 188 + . . . . . -1 -1 -1 . . . C29290 WUBlastX LTR_DIRS 3527 3811 125 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 147938 148522 128 - . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 53620 54240 93 + . . . . . -1 -1 -1 . . . scaffold36410 WUBlastX DNA_Harbinger 6368 6724 147 + . . scaffold36410 GLEAN mRNA 4689 21980 0.354487 - . ID=CGI_10001887; scaffold43302 WUBlastX DNA_IS4EU 14349 14888 61 + . . scaffold43302 GLEAN mRNA 6372 24073 0.277786 - . ID=CGI_10009755; scaffold1347 WUBlastX DNA_IS4EU 24180 24299 42 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1893 WUBlastX DNA_IS4EU 203398 203583 37 - . . scaffold1893 GLEAN mRNA 199713 203993 0.999824 + . ID=CGI_10008861; scaffold814 WUBlastX DNA_IS4EU 95984 96502 149 + . . . . . -1 -1 -1 . . . scaffold814 WUBlastX DNA_IS4EU 96505 96642 44 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_Jockey 115113 116003 128 - . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX DNA_IS4EU 60576 60962 190 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 335726 336394 94 + . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L1 12519 12665 27 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1-Tx1 842743 842973 21 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1-Tx1 843194 844006 68 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Kolobok 202450 202728 112 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 82744 83013 32 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX DNA_Maverick 13247 13741 114 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold274 WUBlastX LTR_DIRS 421618 422103 135 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 383982 384062 24 + . . . . . -1 -1 -1 . . . scaffold224 WUBlastX DNA_TcMar-Tc1 53274 53753 119 - . . scaffold224 GLEAN mRNA 41298 72438 0.99912 - . ID=CGI_10003616; scaffold41766 WUBlastX LINE_L1-Tx1 94146 94388 126 - . . . . . -1 -1 -1 . . . C33534 WUBlastX LINE_CR1-L2 10953 11489 159 + . . . . . -1 -1 -1 . . . C31988 WUBlastX LINE_L1-Tx1 6 2378 1182 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Maverick 64283 64891 100 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 266527 266760 44 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 266763 267032 112 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L1 589971 590558 235 + . . . . . -1 -1 -1 . . . C33730 WUBlastX LTR_Pao 4138 6279 656 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy-Cigr 337804 338442 361 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_L2 522486 524270 924 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_DIRS 1446504 1446812 176 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_DIRS 1446812 1447513 285 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_DIRS 1447527 1448435 682 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_DIRS 1448382 1449086 191 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy 342808 343188 178 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_DIRS 470966 471178 96 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Gypsy 920466 921299 192 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold784 WUBlastX LTR_Gypsy 309302 309385 31 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Kolobok 296601 296711 22 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX DNA_IS4EU 138735 139637 121 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX DNA_hAT-Ac 48521 49114 205 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 187073 187330 117 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold38422 WUBlastX DNA_MuDR 664 1602 119 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX DNA_MuDR 755123 755827 165 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_CR1 37004 37168 31 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; C36680 WUBlastX LINE_CR1 8898 9581 120 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C35532 WUBlastX LINE_RTE-BovB 21688 22383 184 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Ngaro 602805 603299 144 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold404 WUBlastX LINE_L1-Tx1 77820 78518 68 + . . scaffold404 GLEAN mRNA 74476 80325 0.99427 - . ID=CGI_10013603; scaffold37 WUBlastX LINE_L1-Tx1 1722 1910 81 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L1-Tx1 483310 483345 22 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold162 WUBlastX LTR_Gypsy 271400 273580 1254 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold351 WUBlastX DNA_Maverick 282355 282585 36 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LTR_Gypsy 106127 109819 1149 + . . scaffold1459 GLEAN mRNA 92847 117435 0.999674 - . ID=CGI_10010107; scaffold421 WUBlastX LTR_Gypsy-Cigr 310550 310783 48 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 613320 613709 66 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_L1-Tx1 175383 175553 99 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 117917 118651 517 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 118807 120114 987 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 629126 629560 146 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold501 WUBlastX LTR_Gypsy 1301165 1302100 200 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Pao 166161 166265 31 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_L1 43448 43852 128 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1 111543 111827 66 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1 128871 129122 25 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 559011 559406 165 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy 492032 492805 204 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold304 WUBlastX LTR_Gypsy 81940 82188 95 + . . . . . -1 -1 -1 . . . scaffold707 WUBlastX DNA_Harbinger 19260 19388 68 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 114734 114919 116 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-BovB 166225 166281 24 + . . scaffold689 GLEAN mRNA 162763 181677 0.999 - . ID=CGI_10014826; scaffold557 WUBlastX DNA_Maverick 521832 522035 43 - . . scaffold557 GLEAN mRNA 517497 527707 0.973204 - . ID=CGI_10017992; scaffold1480 WUBlastX LINE_R2 137673 138350 203 - . . scaffold1480 GLEAN mRNA 131830 138953 0.535981 - . ID=CGI_10008637; scaffold1794 WUBlastX LINE_RTE-X 503150 503704 51 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_RTE-X 505497 505589 28 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_RTE-X 149265 149951 117 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_RTE-X 6715 7371 162 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_RTE-X 316167 316385 27 + . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LINE_RTE-X 142825 143166 58 - . . scaffold43258 GLEAN mRNA 134740 154295 0.483992 + . ID=CGI_10009634; scaffold165 WUBlastX LTR_Gypsy 110645 110923 29 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold1551 WUBlastX LTR_Gypsy 281155 282441 236 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_CR1 969497 971362 1436 + . . scaffold211 GLEAN mRNA 954777 972416 0.999996 - . ID=CGI_10026971; scaffold211 WUBlastX LINE_CR1 971516 971800 180 + . . scaffold211 GLEAN mRNA 954777 972416 0.999996 - . ID=CGI_10026971; scaffold1301 WUBlastX LTR_Pao 625952 626239 197 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold42634 WUBlastX LINE_L2 10982 11488 110 + . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LTR_Gypsy-Cigr 3196 3915 189 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LTR_Gypsy 281604 282245 122 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold1081 WUBlastX LTR_Gypsy 53661 53936 38 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LTR_Gypsy 95908 95973 32 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold1769 WUBlastX LTR_Gypsy 191984 192325 42 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 171144 171254 33 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Gypsy 310723 311478 204 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 221107 221412 108 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 222030 222143 130 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX RC_Helitron 117418 117750 109 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Ngaro 223463 223909 166 - . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1-Tx1 140667 141089 30 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L1-Tx1 11824 12150 40 - . . scaffold413 GLEAN mRNA 9716 19114 0.940957 - . ID=CGI_10022791; scaffold1857 WUBlastX LINE_L1-Tx1 455836 456483 166 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L1 136093 136137 26 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_L1-Tx1 193254 193916 155 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LINE_RTE-X 107500 107751 105 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_RTE-X 261027 261164 31 - . . scaffold347 GLEAN mRNA 231355 265361 0.350161 - . ID=CGI_10021787; scaffold873 WUBlastX DNA_Maverick 179041 179481 61 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Sola 1161171 1161596 230 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_Sola 1161679 1161765 20 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold40424 WUBlastX DNA_Sola 26286 26483 126 - . . scaffold40424 GLEAN mRNA 14342 47521 0.651302 - . ID=CGI_10004127; scaffold1101 WUBlastX LTR_DIRS 100510 100683 20 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 100671 100889 71 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 100898 101170 49 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 101283 101339 31 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1-Tx1 2204 2515 40 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1-Tx1 3397 3678 119 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1-Tx1 170909 171094 30 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L1-Tx1 931429 934077 1409 - . . . . . -1 -1 -1 . . . C33580 WUBlastX LTR_Pao 5275 5445 43 + . . . . . -1 -1 -1 . . . C33580 WUBlastX LTR_Pao 8009 8425 199 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 630806 632353 889 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold40366 WUBlastX LTR_Pao 78315 78641 70 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 747998 748267 78 - . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_Harbinger 26692 26907 51 + . . scaffold37880 GLEAN mRNA 25813 26910 0.999833 + . ID=CGI_10002534; C27086 WUBlastX DNA_TcMar-Marin 458 673 33 + . . . . . -1 -1 -1 . . . C23024 WUBlastX LINE_Penelope 3 545 189 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 88945 89100 34 - . . . . . -1 -1 -1 . . . scaffold41572 WUBlastX LINE_RTE-X 12004 12471 104 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX LINE_RTE-X 39239 39964 137 - . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX LTR_Gypsy-Cigr 352882 353019 46 + . . . . . -1 -1 -1 . . . scaffold1544 WUBlastX DNA_hAT 11324 11485 40 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_CR1 183161 183946 140 - . . . . . -1 -1 -1 . . . scaffold1001 WUBlastX LINE_L2 26515 27636 131 + . . scaffold1001 GLEAN mRNA 4766 38685 0.672255 - . ID=CGI_10007116; scaffold1484 WUBlastX LINE_CR1-L2 290144 290383 94 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LTR_Gypsy 291195 291500 253 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_En-Spm 1026667 1027026 74 + . . . . . -1 -1 -1 . . . C23484 WUBlastX DNA_IS4EU 3 323 265 + . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX DNA_IS4EU 60468 61559 128 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX DNA_IS4EU 270578 271276 210 - . . scaffold705 GLEAN mRNA 270566 274142 1 - . ID=CGI_10015511; scaffold705 WUBlastX DNA_IS4EU 270578 271276 210 - . . scaffold705 GLEAN mRNA 254129 271765 0.501941 + . ID=CGI_10015510; scaffold118 WUBlastX LINE_L2 72595 73329 148 + . . scaffold118 GLEAN mRNA 64475 78115 0.835706 + . ID=CGI_10004583; scaffold38736 WUBlastX LINE_L1 58480 59097 223 + . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L1 89953 90312 155 - . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_RTE-X 3226 3699 155 + . . . . . -1 -1 -1 . . . scaffold39712 WUBlastX LINE_RTE-X 26631 27380 133 - . . . . . -1 -1 -1 . . . scaffold1200 WUBlastX LINE_RTE-X 36130 36810 165 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 39098 39670 195 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_TcMar-Tc1 174808 175119 109 + . . scaffold1036 GLEAN mRNA 165168 179169 0.593142 - . ID=CGI_10019951; scaffold19 WUBlastX DNA_TcMar-Tc1 152712 153317 96 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold43500 WUBlastX LINE_L1-Tx1 142418 143155 134 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc1 802988 803899 169 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L2 156645 159512 1597 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy-Cigr 698134 699606 1244 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX RC_Helitron 98573 99184 72 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT 12768 13277 130 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Pao 293186 294421 169 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LTR_Gypsy 170223 171329 261 + . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_DIRS 76894 77163 39 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 932330 932566 136 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 932571 932720 31 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 66933 67055 26 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_IS4EU 214489 214635 23 + . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_IS4EU 136488 136901 260 - . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_Kolobok-IS4 143396 143542 83 + . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_Kolobok-IS4 144506 144847 131 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_Harbinger 310698 310835 48 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_Harbinger 310814 311104 165 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Gypsy 210076 210399 73 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 598522 598683 38 - . . . . . -1 -1 -1 . . . C33776 WUBlastX LTR_Gypsy 28 1014 268 + . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LINE_L1 6421 6501 23 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 675574 676140 121 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_RTE-X 236308 236700 25 - . . . . . -1 -1 -1 . . . scaffold1726 WUBlastX LINE_RTE-X 278125 279069 139 - . . . . . -1 -1 -1 . . . scaffold36510 WUBlastX LTR_DIRS 30573 30758 38 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 86118 86660 186 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_L1-Tx1 113612 116365 1689 + . . scaffold163 GLEAN mRNA 112985 132830 0.606466 + . ID=CGI_10018612; scaffold396 WUBlastX DNA_hAT 406021 407418 213 + . . scaffold396 GLEAN mRNA 404152 407505 0.999676 + . ID=CGI_10018116; scaffold38552 WUBlastX LTR_Gypsy-Cigr 25760 26227 258 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L2 423386 424177 69 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Ngaro 337600 338319 242 + . . scaffold433 GLEAN mRNA 321041 347867 0.999675 + . ID=CGI_10027064; scaffold1345 WUBlastX LTR_Gypsy 242357 242401 29 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 243514 243759 59 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1188 WUBlastX LTR_Gypsy-Cigr 205624 206739 178 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold675 WUBlastX LTR_Gypsy 183071 183670 222 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_Kolobok-IS4 215213 215890 193 + . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX DNA_Harbinger 152059 152469 88 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold449 WUBlastX LINE_L1 146962 147177 22 - . . . . . -1 -1 -1 . . . scaffold34106 WUBlastX LTR_DIRS 11323 11448 29 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold1350 WUBlastX LINE_RTE-X 255721 257421 116 - . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX DNA_Maverick 97608 98003 252 + . . . . . -1 -1 -1 . . . scaffold34442 WUBlastX LTR_Ngaro 14125 15051 118 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 39353 40174 479 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 40786 40956 37 - . . scaffold42530 GLEAN mRNA 40747 41325 0.518164 - . ID=CGI_10007160; scaffold513 WUBlastX LTR_Pao 9918 10640 418 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold1711 WUBlastX LTR_Pao 100929 102602 821 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Gypsy 121510 124032 843 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Gypsy 123899 125701 1177 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 499546 499695 20 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX DNA_En-Spm 1202328 1202801 241 + . . . . . -1 -1 -1 . . . scaffold30716 WUBlastX LINE_L2 446 1180 167 + . . . . . -1 -1 -1 . . . scaffold42766 WUBlastX DNA_hAT-Tip100 3287 3574 97 - . . scaffold42766 GLEAN mRNA 582 5602 0.982593 - . ID=CGI_10007660; scaffold1138 WUBlastX DNA_P 190172 191221 131 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 190172 191221 131 + . . scaffold1138 GLEAN mRNA 186841 191383 0.716431 + . ID=CGI_10015374; scaffold1174 WUBlastX DNA_TcMar-Fot1 1089703 1090707 42 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold1654 WUBlastX LINE_RTE-BovB 10446 10631 40 + . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_RTE-X 121592 121783 87 - . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX LINE_RTE-X 69442 69819 143 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_RTE-X 69975 70445 53 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold37850 WUBlastX LTR_Gypsy 19606 20295 156 - . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX LTR_Pao 2819 3340 454 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_DIRS 41879 43183 156 + . . . . . -1 -1 -1 . . . scaffold161 WUBlastX DNA_Crypton 7776 8822 188 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 224980 225201 23 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Ngaro 1812570 1812758 123 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Ngaro 1812748 1812912 77 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Ngaro 1812958 1813143 61 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 17030 17191 27 + . . . . . -1 -1 -1 . . . scaffold1191 WUBlastX DNA_MuDR 77269 77529 91 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold129 WUBlastX LINE_L1 47036 47266 27 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1 736465 736878 150 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-BovB 171727 172005 63 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-BovB 555094 555384 222 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 102014 102670 39 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-BovB 202505 202693 36 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 202657 202938 107 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold532 WUBlastX LINE_RTE-X 27095 27265 108 + . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_RTE-BovB 45397 45687 53 + . . . . . -1 -1 -1 . . . scaffold129 WUBlastX LINE_L1-Tx1 45475 46062 56 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_L2 435601 436446 440 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_L2 436451 438961 1546 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Pao 50244 55244 2183 - . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Pao 47538 47939 34 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX DNA_hAT 781794 782045 91 + . . scaffold226 GLEAN mRNA 780022 794397 0.995567 + . ID=CGI_10025375; scaffold226 WUBlastX DNA_hAT 780073 780750 134 + . . scaffold226 GLEAN mRNA 780022 794397 0.995567 + . ID=CGI_10025375; scaffold38576 WUBlastX LINE_CR1-L2 38741 38824 26 + . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Ngaro 177903 178040 24 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 27156 27608 102 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy-Cigr 370397 370846 285 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 504797 505051 44 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Ngaro 9496 9999 76 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Ngaro 10016 10342 113 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_RTE-X 259375 260286 136 + . . . . . -1 -1 -1 . . . C26040 WUBlastX LINE_RTE-X 2134 3090 214 - . . . . . -1 -1 -1 . . . C24726 WUBlastX DNA_Sola 982 1353 123 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX DNA_hAT-Tip100 269410 269598 25 - . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LTR_Gypsy-Troyk 545532 546152 234 + . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold20 WUBlastX LTR_Gypsy 749142 751109 1168 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_L1-Tx1 107658 111395 1873 + . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX LTR_Gypsy 58717 59013 68 + . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX LTR_Gypsy 59079 59774 424 + . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX LTR_Gypsy 59779 62016 1864 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1-Tx1 32232 33206 407 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1-Tx1 33172 34440 880 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1-Tx1 34443 36254 600 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_L1 366507 366647 98 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_CR1 223858 224175 40 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1066 WUBlastX DNA_Harbinger 89945 90238 212 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_Kolobok-IS4 88119 88631 54 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold963 WUBlastX DNA_IS4EU 312585 312713 52 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_L1-Tx1 754147 754440 112 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 89729 89935 56 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold40134 WUBlastX LINE_RTE-X 70053 70409 117 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; C28310 WUBlastX LINE_Proto2 3 1328 167 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Maverick 48974 49291 145 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 364812 365759 632 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 366594 368159 1428 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 42735 42983 37 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold601 WUBlastX LTR_Gypsy-Cigr 436658 437053 158 - . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 4423 4587 37 + . . . . . -1 -1 -1 . . . scaffold823 WUBlastX LTR_DIRS 91509 92570 188 + . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_Harbinger 181507 181899 164 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_Harbinger 182537 182671 118 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 375446 375586 83 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 375625 375963 145 + . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1-Tx1 410 517 29 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1-Tx1 1518 1691 76 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1-Tx1 1691 2206 84 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Kolobok 304903 305307 79 - . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LINE_Penelope 114433 114696 29 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 211712 211783 45 - . . . . . -1 -1 -1 . . . C28272 WUBlastX DNA_Sola 250 834 156 - . . . . . -1 -1 -1 . . . C29498 WUBlastX LTR_Pao 6455 6691 123 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 318254 318622 153 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX DNA_TcMar-Marin 908032 908340 198 - . . scaffold784 GLEAN mRNA 903046 922274 0.999676 + . ID=CGI_10024450; scaffold733 WUBlastX DNA_Kolobok 375970 376062 26 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold1213 WUBlastX LINE_L1-Tx1 925462 925803 108 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 153142 153306 39 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 153919 154767 258 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_RTE-BovB 640622 640801 29 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_RTE-X 93147 93401 26 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 1503666 1504904 57 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-X 937485 937694 87 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LTR_Gypsy 5933 6367 394 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LTR_Gypsy 6427 7425 996 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Gypsy 317255 318583 1120 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_CR1-L2 205348 205473 39 + . . . . . -1 -1 -1 . . . C17730 WUBlastX LTR_DIRS 3 515 275 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 561154 561882 192 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX DNA_Harbinger 1001157 1001276 97 + . . scaffold149 GLEAN mRNA 989278 1013104 0.999502 - . ID=CGI_10025337; scaffold149 WUBlastX DNA_Harbinger 1001157 1001276 97 + . . scaffold149 GLEAN mRNA 998861 1001294 1 + . ID=CGI_10025338; scaffold149 WUBlastX DNA_Harbinger 1002046 1002180 60 + . . scaffold149 GLEAN mRNA 989278 1013104 0.999502 - . ID=CGI_10025337; scaffold149 WUBlastX DNA_Harbinger 1002433 1002699 128 + . . scaffold149 GLEAN mRNA 989278 1013104 0.999502 - . ID=CGI_10025337; scaffold672 WUBlastX LINE_I 429552 432191 68 - . . scaffold672 GLEAN mRNA 429192 430364 0.999999 - . ID=CGI_10021041; scaffold35490 WUBlastX LINE_L1-Tx1 19888 20805 210 - . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_L1-Tx1 10956 11870 207 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_RTE-X 390278 390559 131 - . . . . . -1 -1 -1 . . . scaffold40290 WUBlastX LINE_RTE-X 71591 72202 148 - . . . . . -1 -1 -1 . . . scaffold41034 WUBlastX LTR_DIRS 57934 58020 54 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold41034 WUBlastX LTR_DIRS 58020 58382 187 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold1077 WUBlastX LINE_L1-Tx1 178811 179854 145 + . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX DNA_TcMar-Tc1 272221 273030 215 - . . . . . -1 -1 -1 . . . scaffold1375 WUBlastX LTR_Pao 21506 22324 683 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_DRE 601543 601641 32 + . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LTR_Gypsy 15857 16240 99 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold40104 WUBlastX DNA_Kolobok-IS4 37897 38400 168 - . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold1785 WUBlastX LINE_RTE-X 22792 23523 162 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; C26460 WUBlastX LTR_Ngaro 2471 2980 277 + . . . . . -1 -1 -1 . . . scaffold608 WUBlastX LINE_L1-Tx1 53277 53822 40 - . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LTR_Pao 76093 76755 150 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold156 WUBlastX LINE_CR1 902003 902527 343 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 101733 101819 35 - . . . . . -1 -1 -1 . . . scaffold823 WUBlastX LTR_DIRS 92525 93076 341 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX DNA_hAT-hATw 295716 296096 58 - . . . . . -1 -1 -1 . . . scaffold510 WUBlastX DNA_hAT-hATw 296917 297765 55 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_RTE-X 134780 135028 114 + . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LTR_Gypsy 256413 256484 21 - . . . . . -1 -1 -1 . . . C29106 WUBlastX LTR_Ngaro 4622 4684 36 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_L1-Tx1 687420 687830 79 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 688533 688580 38 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold210 WUBlastX LTR_Gypsy 278246 278818 106 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_R2-Hero 558888 559034 45 - . . scaffold563 GLEAN mRNA 542480 589820 0.135238 + . ID=CGI_10019846; scaffold962 WUBlastX DNA_IS4EU 1468712 1469215 188 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_IS4EU 1469390 1469779 137 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 400499 400642 75 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 401444 401560 25 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 401550 401744 44 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_TcMar-Fot1 169120 170223 345 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1 266917 267105 50 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 388649 388759 73 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 377809 378144 119 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 378144 378512 77 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Gypsy 181217 181438 46 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Gypsy 181638 181889 170 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Gypsy 181888 182109 125 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L1-Tx1 33712 34404 163 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Ngaro 411844 412236 116 + . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 39915 40394 302 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_RTE-X 549049 550101 275 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_RTE-X 37861 38187 52 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LTR_Gypsy 64019 64288 210 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L2 28170 28847 229 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1 108994 109368 62 - . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LINE_L1 34681 34776 23 + . . . . . -1 -1 -1 . . . scaffold793 WUBlastX LINE_RTE-BovB 768 1148 265 + . . . . . -1 -1 -1 . . . scaffold793 WUBlastX LINE_RTE-BovB 1163 1381 120 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 797276 797779 22 + . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 169773 170072 54 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 170448 170879 189 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 171968 172018 28 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold1850 WUBlastX LTR_Gypsy 115014 115409 55 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_Harbinger 724864 725403 142 - . . . . . -1 -1 -1 . . . scaffold707 WUBlastX DNA_Harbinger 48490 48645 72 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold1382 WUBlastX DNA_Harbinger 219830 219946 37 + . . scaffold1382 GLEAN mRNA 218944 220078 0.999189 + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 219830 219946 37 + . . scaffold1382 GLEAN mRNA 212938 228080 0.974072 - . ID=CGI_10011177; scaffold716 WUBlastX LTR_Ngaro 331929 332879 260 + . . scaffold716 GLEAN mRNA 317907 344001 0.842692 + . ID=CGI_10014452; scaffold241 WUBlastX LINE_RTE-X 760344 760748 189 - . . . . . -1 -1 -1 . . . scaffold39778 WUBlastX LINE_RTE-X 43475 43642 88 + . . scaffold39778 GLEAN mRNA 34210 51922 0.521329 + . ID=CGI_10003608; scaffold950 WUBlastX LTR_DIRS 5173 6117 270 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 253761 253859 32 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold198 WUBlastX LINE_Jockey 1185701 1187446 208 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 251830 251889 28 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold347 WUBlastX LINE_CR1 129498 129683 98 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold1772 WUBlastX LTR_DIRS 190597 190989 242 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Ngaro 165295 165774 114 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LTR_Ngaro 115813 116565 253 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 862480 863232 123 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold393 WUBlastX LTR_Gypsy 995868 996398 132 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Harbinger 1426508 1426657 62 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Harbinger 1426654 1426971 151 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Harbinger 1426968 1427393 139 + . . . . . -1 -1 -1 . . . C29106 WUBlastX LTR_Ngaro 2210 2902 205 - . . . . . -1 -1 -1 . . . scaffold1230 WUBlastX LINE_L1-Tx1 63646 64101 384 + . . scaffold1230 GLEAN mRNA 56388 93654 0.514803 - . ID=CGI_10004423; scaffold1230 WUBlastX LINE_L1-Tx1 63646 64101 384 + . . scaffold1230 GLEAN mRNA 61857 71757 0.544345 + . ID=CGI_10004424; scaffold43038 WUBlastX LINE_L1-Tx1 207900 209123 185 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_RTE-X 216880 217044 59 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc2 725562 726245 314 - . . . . . -1 -1 -1 . . . scaffold35896 WUBlastX DNA_TcMar-Tc1 9932 10150 94 + . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold43200 WUBlastX DNA_TcMar-Tc1 124591 125238 230 - . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold1213 WUBlastX LINE_L1-Tx1 420024 420203 117 + . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold759 WUBlastX LTR_Gypsy 97444 99024 358 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1 81976 83064 340 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 919331 919426 28 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-X 285377 285769 185 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-X 286029 286349 115 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1-Tx1 89483 89788 35 + . . . . . -1 -1 -1 . . . scaffold870 WUBlastX DNA_hAT 49901 50056 52 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 47456 47710 102 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 48117 48317 143 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 48777 48923 73 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 49162 49272 46 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold41594 WUBlastX LTR_Pao 59315 60115 232 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LTR_DIRS? 70741 70872 116 + . . . . . -1 -1 -1 . . . scaffold29372 WUBlastX LTR_Ngaro 2146 2250 28 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 708044 708718 372 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_IS4EU 513215 513313 28 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1-Tx1 139200 140600 160 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold1187 WUBlastX DNA_TcMar-Marin 42070 42402 251 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 64855 65370 162 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold42076 WUBlastX DNA_TcMar-Tc1 29547 30230 326 + . . scaffold42076 GLEAN mRNA 21711 47909 0.941371 + . ID=CGI_10006082; scaffold1083 WUBlastX LTR_Gypsy 460890 461291 373 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 67075 67356 29 + . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LINE_L2 90248 90427 32 + . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LINE_L2 90418 90603 26 + . . . . . -1 -1 -1 . . . scaffold42364 WUBlastX LINE_L2 74217 75479 188 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold42490 WUBlastX LINE_L1-Tx1 31583 32548 161 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1 96255 96452 32 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 584415 584627 90 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 467490 467774 87 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_PiggyBac 454743 455201 209 - . . . . . -1 -1 -1 . . . C17584 WUBlastX LTR_Gypsy 7 504 412 + . . . . . -1 -1 -1 . . . scaffold1664 WUBlastX LTR_Ngaro 45574 46536 371 + . . . . . -1 -1 -1 . . . scaffold1507 WUBlastX LTR_Ngaro 12947 13423 145 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold36928 WUBlastX LINE_L1-Tx1 35708 36889 240 + . . . . . -1 -1 -1 . . . C35532 WUBlastX LTR_Ngaro 12355 13257 381 - . . C35532 GLEAN mRNA 11931 21500 0.999947 - . ID=CGI_10001547; scaffold1741 WUBlastX DNA_Merlin 61290 61982 359 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 107264 107872 423 - . . . . . -1 -1 -1 . . . C34402 WUBlastX DNA_Maverick 17815 18426 429 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 15891 16949 317 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_L1-Tx1 463633 464223 102 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold754 WUBlastX LINE_L2 44092 45081 360 + . . scaffold754 GLEAN mRNA 34463 47005 0.401358 + . ID=CGI_10014062; scaffold593 WUBlastX LTR_Gypsy 500523 500741 31 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 88506 89159 249 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L1-Tx1 365526 366317 385 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold1475 WUBlastX LINE_L1 86697 86948 32 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 590366 590461 75 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 793586 793795 114 + . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_Gypsy 14801 14920 24 - . . . . . -1 -1 -1 . . . scaffold941 WUBlastX LTR_Gypsy 19530 20126 491 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1005071 1005367 115 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_Kolobok-IS4 596462 597121 437 + . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LINE_L1-Tx1 12001 12177 45 + . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold40172 WUBlastX LINE_L1-Tx1 12176 12919 230 + . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold40172 WUBlastX LINE_L1-Tx1 12951 13388 73 + . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold440 WUBlastX LINE_L1-Tx1 41763 42110 169 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_L1-Tx1 42118 43122 158 + . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX DNA_TcMar-Tc1 3967 4989 404 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1687938 1689311 358 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LINE_RTE-BovB 436353 437183 281 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LINE_RTE-BovB 437161 437511 113 + . . . . . -1 -1 -1 . . . scaffold41660 WUBlastX LINE_RTE-X 21084 22082 306 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1-Tx1 601809 602027 69 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX DNA_TcMar-Tc1 121513 121863 212 + . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX LINE_L1-Tx1 10734 11075 125 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 84529 84918 173 + . . . . . -1 -1 -1 . . . C31144 WUBlastX LTR_Gypsy 7433 7534 31 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_R2-Hero 593234 593374 45 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_L2 390203 390334 56 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX DNA_Sola 100295 100360 44 + . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1-Tx1 260644 261402 438 + . . . . . -1 -1 -1 . . . scaffold718 WUBlastX LINE_L2 17747 18178 154 + . . . . . -1 -1 -1 . . . scaffold718 WUBlastX LINE_L2 18665 18961 60 + . . . . . -1 -1 -1 . . . scaffold718 WUBlastX LINE_L2 18995 19120 57 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_Gypsy 595753 597051 442 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_Gypsy 240272 240805 153 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold321 WUBlastX LTR_Gypsy 47461 47931 36 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 180591 180704 21 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_CR1-L2 83948 84217 111 + . . . . . -1 -1 -1 . . . scaffold868 WUBlastX LINE_Penelope 116466 117167 90 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Maverick 1091258 1091887 161 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Maverick 1091832 1092356 253 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LTR_Ngaro 787946 788860 404 - . . scaffold334 GLEAN mRNA 767755 789598 0.645847 - . ID=CGI_10025962; scaffold1132 WUBlastX DNA_hAT-Ac 789106 789249 103 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Ac 791102 791248 56 - . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LTR_DIRS 104615 104803 33 - . . scaffold939 GLEAN mRNA 104320 109334 0.992629 - . ID=CGI_10008991; scaffold939 WUBlastX LTR_DIRS 102807 103361 279 - . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LTR_DIRS 103841 104224 136 - . . . . . -1 -1 -1 . . . C25328 WUBlastX LINE_CR1-L2 1728 1916 86 - . . . . . -1 -1 -1 . . . scaffold40186 WUBlastX LINE_L1-Tx1 83663 83962 136 + . . . . . -1 -1 -1 . . . scaffold40186 WUBlastX LINE_L1-Tx1 83965 85155 237 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L1-Tx1 128255 128854 375 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 379881 380546 163 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 381090 381233 60 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L1-Tx1 365261 365413 20 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold977 WUBlastX LINE_L1-Tx1 363828 363896 21 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_L2 493857 494969 317 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_Gypsy 453388 453915 114 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold321 WUBlastX LTR_Gypsy 230220 230510 36 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_DIRS 1355198 1356148 470 - . . . . . -1 -1 -1 . . . scaffold1859 WUBlastX LINE_CR1-L2 47922 48197 161 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_CR1-L2 277050 277193 52 - . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LINE_RTE-X 193564 193608 20 - . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX LTR_Ngaro 74109 74495 193 - . . . . . -1 -1 -1 . . . scaffold33980 WUBlastX LTR_Ngaro 10702 11067 257 - . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold1050 WUBlastX DNA_hAT 215008 215352 180 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 215737 216276 126 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 216432 216644 81 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 217824 218045 98 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold1179 WUBlastX LTR_Gypsy-Cigr 872441 873130 266 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 156698 157165 233 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_L2 236602 237411 70 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 106439 106633 109 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 107441 107587 75 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 107693 107902 118 - . . . . . -1 -1 -1 . . . C30570 WUBlastX LINE_RTE-X 6248 8041 315 + . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LTR_Pao 187355 187426 22 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_RTE-BovB 118626 121103 400 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 230121 230684 336 - . . . . . -1 -1 -1 . . . scaffold34894 WUBlastX LINE_Penelope 16187 16459 48 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 647111 647431 156 + . . . . . -1 -1 -1 . . . C29438 WUBlastX LINE_RTE-X 4058 4372 173 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold121 WUBlastX LINE_L1-Tx1 329475 329807 224 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX DNA_hAT 14844 16577 562 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_hAT 107528 107806 133 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 107943 108047 40 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 109000 109200 124 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold1308 WUBlastX LTR_Gypsy 21590 21856 92 + . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LTR_Gypsy 22136 22546 264 + . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LTR_Gypsy 22503 22757 111 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_IS4EU 20501 21292 454 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_IS4EU 21312 21446 72 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_L1-Tx1 457589 459616 268 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX DNA_Maverick 10662 11402 407 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 191207 191419 22 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LTR_DIRS 517878 518750 546 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_R2-Hero 259230 259328 24 - . . scaffold1899 GLEAN mRNA 252311 263688 0.999676 - . ID=CGI_10013616; scaffold1899 WUBlastX LINE_R2-Hero 259230 259328 24 - . . scaffold1899 GLEAN mRNA 252505 265918 0.435071 + . ID=CGI_10013617; scaffold31 WUBlastX DNA_Maverick 209131 210144 541 - . . scaffold31 GLEAN mRNA 202867 210562 0.991871 - . ID=CGI_10013561; scaffold106 WUBlastX LINE_RTE-X 554785 555822 468 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-X 191752 192597 547 - . . scaffold672 GLEAN mRNA 185206 197456 1 + . ID=CGI_10021027; scaffold43500 WUBlastX LINE_L1-Tx1 141804 142013 107 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 155252 155479 85 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 156021 157283 134 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 157386 157544 51 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 157656 157895 119 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 158030 158206 80 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 108404 108538 85 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 234152 235021 172 - . . . . . -1 -1 -1 . . . scaffold37850 WUBlastX LTR_Gypsy 18261 19622 560 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 338064 338285 21 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 39863 39982 20 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold41650 WUBlastX LINE_L2 3844 4833 466 - . . scaffold41650 GLEAN mRNA 2732 34982 0.998592 + . ID=CGI_10005337; scaffold1860 WUBlastX LTR_DIRS 348208 348849 180 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LTR_DIRS 348843 349103 102 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LTR_DIRS 349118 349447 261 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LTR_DIRS 349948 350115 47 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_TcMar-Tc1 204497 204850 84 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_TcMar-Tc1 204829 205362 299 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_TcMar-Tc1 205365 205460 54 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_TcMar-Tc1 239586 240212 362 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 222559 224274 558 + . . scaffold1665 GLEAN mRNA 220836 229215 0.994598 - . ID=CGI_10015206; scaffold57 WUBlastX DNA_hAT 300410 300712 136 + . . scaffold57 GLEAN mRNA 297762 301894 1 + . ID=CGI_10020550; scaffold38978 WUBlastX LTR_Gypsy 59271 59387 108 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 155633 155758 73 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 156837 157097 189 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 157672 157944 144 + . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LTR_Pao 311637 312104 135 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold211 WUBlastX LTR_Pao 18435 19763 616 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_RTE-X 21262 21675 181 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX DNA_Academ 218176 218253 30 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX DNA_Academ 218249 218500 183 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX DNA_Academ 218536 219003 187 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX DNA_Academ 218933 219454 258 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_Academ 111854 112213 170 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LTR_Gypsy 128067 129401 136 - . . . . . -1 -1 -1 . . . scaffold1893 WUBlastX LTR_Gypsy 184340 185524 625 + . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX RC_Helitron 61726 63102 363 + . . scaffold1833 GLEAN mRNA 49110 69658 0.917044 + . ID=CGI_10007300; scaffold340 WUBlastX DNA_IS4EU 217079 217495 180 + . . . . . -1 -1 -1 . . . scaffold340 WUBlastX DNA_IS4EU 218538 219605 307 + . . scaffold340 GLEAN mRNA 218224 224082 0.984022 - . ID=CGI_10011108; scaffold146 WUBlastX LINE_RTE-X 379902 380354 211 + . . . . . -1 -1 -1 . . . scaffold1654 WUBlastX LINE_RTE-BovB 11929 12300 208 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1-Tx1 31535 31777 44 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Gypsy 647243 647821 113 + . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LTR_Gypsy 27066 28793 703 - . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy-Cigr 28201 29097 365 + . . . . . -1 -1 -1 . . . C23232 WUBlastX RC_Helitron 1 1128 669 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Gypsy 253179 253466 49 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 395696 396658 649 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 39951 40265 44 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold1328 WUBlastX DNA_Maverick 24180 25430 628 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 109078 109401 99 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy-Cigr 39629 40159 259 + . . . . . -1 -1 -1 . . . scaffold1509 WUBlastX LINE_L2 100047 100874 572 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-BovB 311043 311555 281 - . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX LTR_Gypsy 186712 187344 47 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 225346 225951 121 - . . . . . -1 -1 -1 . . . scaffold1072 WUBlastX LINE_L1 17076 17408 90 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1 170304 170675 126 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 1043376 1043525 33 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold1101 WUBlastX LINE_L2 338323 338874 138 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_L2 338919 340124 521 - . . . . . -1 -1 -1 . . . scaffold912 WUBlastX LINE_RTE-X 51128 52378 351 + . . . . . -1 -1 -1 . . . scaffold982 WUBlastX LINE_RTE-X 4338 5099 169 - . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_L1-Tx1 35828 36931 26 - . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Pao 63314 63637 235 + . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Pao 63637 63801 52 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy 26772 27434 27 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L1-Tx1 203412 203570 21 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L1-Tx1 203537 204211 276 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L1-Tx1 204315 204707 108 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L1-Tx1 204907 205269 55 - . . . . . -1 -1 -1 . . . scaffold1247 WUBlastX DNA_TcMar-Fot1 3797 5644 642 - . . . . . -1 -1 -1 . . . scaffold569 WUBlastX DNA_Maverick 204094 205164 704 + . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LTR_Gypsy 133906 134526 219 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1210517 1211041 333 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1211609 1211692 32 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1212605 1213021 274 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_RTE-BovB 949466 949882 367 + . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold41954 WUBlastX LINE_RTE-X 130201 130344 30 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold41954 WUBlastX LINE_RTE-X 130350 130490 25 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold38026 WUBlastX LINE_L1-Tx1 32729 34822 471 + . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX LINE_L1-Tx1 55006 55875 69 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Gypsy 654184 654780 35 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_RTE-X 679707 680105 128 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 750026 751222 465 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy 51429 51968 109 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1097829 1098452 44 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold42390 WUBlastX LTR_Gypsy 87255 88217 233 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 88191 88274 20 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX LTR_Pao 71568 71954 305 - . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX LTR_Gypsy 49509 50834 582 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 233573 234037 211 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 234959 235135 37 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_Penelope 71474 72304 477 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_TcMar-Pogo 1004293 1005261 758 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 85188 85313 70 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 13354 14274 700 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 571010 571918 57 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 571010 571918 57 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold911 WUBlastX LINE_RTE-X 308856 309668 438 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_DIRS 284505 285608 373 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_DIRS 285538 285813 85 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_DIRS 285842 286558 208 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_L2 122628 124037 358 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy 763147 763326 66 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LTR_Ngaro 120999 121652 194 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 92223 92519 71 + . . . . . -1 -1 -1 . . . C32314 WUBlastX LTR_Gypsy 47 1459 806 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_Penelope 207972 208145 49 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 84057 84119 23 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_Penelope 672903 673085 36 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX LINE_L1-Tx1 591370 591849 279 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold42704 WUBlastX LINE_L1-Tx1 177434 177532 37 + . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LINE_L2 244495 245283 350 - . . scaffold432 GLEAN mRNA 235322 257919 0.999925 + . ID=CGI_10023091; scaffold575 WUBlastX LTR_Gypsy 98494 98649 28 + . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy-Cigr 98101 98499 166 + . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold43244 WUBlastX LINE_RTE-X 54204 55790 154 + . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LINE_L1-Tx1 35825 36070 53 - . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Pao 58717 59319 263 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Ngaro 233513 234856 841 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-BovB 157967 158533 276 - . . scaffold72 GLEAN mRNA 144323 162117 0.999415 + . ID=CGI_10017838; scaffold72 WUBlastX LINE_RTE-BovB 158535 159197 588 - . . scaffold72 GLEAN mRNA 144323 162117 0.999415 + . ID=CGI_10017838; scaffold1671 WUBlastX LTR_Pao 110873 111346 261 + . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX LTR_Ngaro 30440 30691 156 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 31194 31346 87 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold852 WUBlastX LTR_Gypsy 70439 71233 76 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold1822 WUBlastX LTR_Gypsy 12510 13208 49 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy 125571 126731 960 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_CR1-L2 177864 178049 83 - . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1 49573 49680 33 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_L2 528849 529154 63 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_L2 348721 349191 37 + . . . . . -1 -1 -1 . . . scaffold41220 WUBlastX LINE_L2 71361 71672 40 - . . scaffold41220 GLEAN mRNA 56736 74140 0.470832 - . ID=CGI_10004855; scaffold771 WUBlastX LINE_CR1-L2 317437 317532 20 + . . . . . -1 -1 -1 . . . scaffold856 WUBlastX LINE_CR1-L2 719 868 60 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_CR1 367445 367579 47 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_Jockey 146389 146487 20 - . . scaffold619 GLEAN mRNA 133305 165039 0.859619 - . ID=CGI_10025755; scaffold748 WUBlastX LINE_L2 260652 261110 47 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LTR_DIRS 171806 172189 35 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Ngaro 206516 206734 44 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 268741 269160 74 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy 118715 119053 74 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LTR_Gypsy 156336 156521 82 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LTR_Gypsy 26672 26989 61 + . . scaffold1704 GLEAN mRNA 12405 27811 0.998148 + . ID=CGI_10010159; scaffold834 WUBlastX LTR_Gypsy 9532 9714 90 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 597440 597679 29 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 164298 164504 44 + . . scaffold1081 GLEAN mRNA 151167 168373 0.603491 + . ID=CGI_10007686; scaffold1845 WUBlastX LTR_Gypsy 171048 171383 85 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_Harbinger 233917 234078 62 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_Harbinger 372867 373019 44 - . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX DNA_Harbinger 1219 1527 63 - . . . . . -1 -1 -1 . . . scaffold138 WUBlastX DNA_Harbinger 200456 200584 59 + . . . . . -1 -1 -1 . . . scaffold30682 WUBlastX DNA_Harbinger 3189 3341 71 - . . scaffold30682 GLEAN mRNA 363 3344 1 - . ID=CGI_10000658; C33256 WUBlastX LTR_Gypsy 9977 10024 26 - . . . . . -1 -1 -1 . . . scaffold253 WUBlastX LTR_Gypsy 2582 2698 20 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold40224 WUBlastX LTR_Gypsy 85469 85777 41 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX RC_Helitron 200207 200422 48 + . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX DNA_IS4EU 31078 31275 66 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 291698 292027 27 - . . . . . -1 -1 -1 . . . scaffold1452 WUBlastX DNA_IS4EU 69769 69870 36 + . . . . . -1 -1 -1 . . . scaffold547 WUBlastX DNA_Kolobok-IS4 431956 432198 20 - . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold547 WUBlastX DNA_Kolobok-IS4 432225 432524 41 - . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold354 WUBlastX LINE_L1 390848 390988 25 - . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX DNA_Kolobok-Hyd 167382 167735 47 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_MuDR 279490 280362 45 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_Jockey 146661 146918 35 - . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_P 152172 152342 42 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_P 574473 574643 42 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold1267 WUBlastX DNA_TcMar-Tc1 258836 258958 58 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_Penelope 121744 122133 24 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold1676 WUBlastX DNA_TcMar-Tc1 6585 6746 79 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_TcMar-Tc1 676377 676628 23 - . . scaffold101 GLEAN mRNA 676539 710927 0.888019 - . ID=CGI_10021653; scaffold1245 WUBlastX DNA_TcMar-Marin 104370 104651 28 - . . scaffold1245 GLEAN mRNA 102403 119670 0.989696 - . ID=CGI_10009226; scaffold43526 WUBlastX LINE_RTE-X 38414 38530 38 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold43878 WUBlastX LINE_RTE-X 79342 79416 46 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_RTE-BovB 487249 487770 43 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold1209 WUBlastX DNA_Maverick 89692 89889 70 + . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_RTE-BovB 96498 96644 51 - . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX LINE_L1 60800 60919 24 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_RTE-X 437196 437324 64 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-X 717557 717940 22 - . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold389 WUBlastX LINE_RTE-X 117861 118022 37 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_hAT-Tip100 1053896 1053982 21 + . . scaffold481 GLEAN mRNA 1047969 1057631 0.5 - . ID=CGI_10027259; scaffold41898 WUBlastX DNA_hAT-Tip100 13720 14085 67 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_DIRS 29473 29712 64 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold194 WUBlastX LINE_RTE-X 195617 195883 23 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_RTE-X 128645 128860 66 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_RTE-X 342487 342738 52 + . . scaffold160 GLEAN mRNA 341764 344858 1 + . ID=CGI_10020592; scaffold1241 WUBlastX LINE_RTE-X 413703 414092 46 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LTR_Gypsy 1360 1590 23 + . . scaffold39642 GLEAN mRNA 1126 1641 0.776637 + . ID=CGI_10003493; scaffold1125 WUBlastX DNA_hAT 196307 196507 107 - . . scaffold1125 GLEAN mRNA 189933 228052 0.366465 - . ID=CGI_10012338; scaffold366 WUBlastX LTR_Pao 25495 25695 36 + . . scaffold366 GLEAN mRNA 4558 26262 1 + . ID=CGI_10007771; scaffold1603 WUBlastX LTR_Pao 333551 333682 47 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 334130 334402 29 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold42584 WUBlastX LINE_CR1-L2 100207 100683 39 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold1740 WUBlastX LINE_CR1-L2 119198 119284 35 - . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L2 11408 11806 49 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_L2 2579 2701 30 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold290 WUBlastX LINE_L2 334022 334111 21 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 38534 38842 95 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Gypsy 6842 7072 23 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 428557 428676 25 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Ngaro 114446 114607 21 - . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_DIRS 49556 49738 78 - . . . . . -1 -1 -1 . . . scaffold38400 WUBlastX LTR_DIRS 12418 12801 76 + . . . . . -1 -1 -1 . . . scaffold34266 WUBlastX LTR_DIRS 9672 10019 43 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_Crypton 367451 367771 57 - . . . . . -1 -1 -1 . . . scaffold37672 WUBlastX DNA_Crypton 4880 5458 61 - . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX DNA_Crypton 243118 243450 89 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX DNA_Crypton 178939 179385 48 - . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold807 WUBlastX LTR_Gypsy 65577 65930 84 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 143032 143256 32 + . . . . . -1 -1 -1 . . . C26472 WUBlastX LTR_Gypsy 359 850 48 - . . C26472 GLEAN mRNA 44 535 0.999372 - . ID=CGI_10000305; scaffold854 WUBlastX DNA_TcMar-Tc1 696368 696532 21 - . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX DNA_IS4EU 613 753 29 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX DNA_IS4EU 1823 1993 28 + . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX DNA_IS4EU 26943 27305 50 + . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_R2-Hero 123111 123443 71 + . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold194 WUBlastX LINE_R2-Hero 136997 137221 52 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX RC_Helitron 615196 615486 39 - . . scaffold343 GLEAN mRNA 606783 616118 0.949663 + . ID=CGI_10021767; scaffold364 WUBlastX DNA_hAT-Ac 367293 367457 63 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy 17342 17596 60 + . . . . . -1 -1 -1 . . . scaffold44064 WUBlastX DNA_Harbinger 3537 3671 32 - . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX DNA_Harbinger 144525 144671 21 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 88753 88836 23 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold41776 WUBlastX LTR_Gypsy 114048 114317 64 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Ngaro 88977 89324 23 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold32094 WUBlastX LTR_Ngaro 9713 9949 34 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L2 143488 144084 62 + . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L2 24185 24556 75 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_P 170000 170254 72 + . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_Penelope 171584 171997 64 + . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_Penelope 61469 61666 64 - . . scaffold509 GLEAN mRNA 56462 67453 0.764061 - . ID=CGI_10018638; scaffold459 WUBlastX LINE_Penelope 459752 460141 53 - . . scaffold459 GLEAN mRNA 450027 467601 0.693067 - . ID=CGI_10018185; scaffold1870 WUBlastX LINE_L1 97026 97520 22 - . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold369 WUBlastX LINE_Penelope 161627 161860 42 + . . scaffold369 GLEAN mRNA 147278 163434 0.70167 + . ID=CGI_10006958; scaffold369 WUBlastX LINE_Penelope 162613 163017 21 + . . scaffold369 GLEAN mRNA 147278 163434 0.70167 + . ID=CGI_10006958; scaffold41834 WUBlastX LINE_RTE-X 114410 114586 74 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 602080 602166 26 + . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX LINE_RTE-X 19394 19471 32 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 476954 477064 25 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold57 WUBlastX LINE_RTE-BovB 446300 446407 56 - . . scaffold57 GLEAN mRNA 444980 452251 1 + . ID=CGI_10020561; scaffold479 WUBlastX DNA_Maverick 410767 411000 39 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_PiggyBac 232762 233136 76 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_PiggyBac 241539 241862 59 - . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX DNA_TcMar-Marin 46841 47056 82 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_DIRS 141231 141371 70 - . . . . . -1 -1 -1 . . . scaffold40164 WUBlastX LINE_L1-Tx1 7681 7722 27 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold35466 WUBlastX LINE_L1-Tx1 14512 14640 55 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1-Tx1 737365 737688 35 + . . . . . -1 -1 -1 . . . scaffold42904 WUBlastX LTR_Copia 94472 95047 32 - . . scaffold42904 GLEAN mRNA 87880 118208 0.944676 - . ID=CGI_10008103; scaffold1009 WUBlastX DNA_TcMar-Tc2 1790925 1791212 86 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_CR1-L2 278621 278839 45 - . . scaffold818 GLEAN mRNA 276309 285154 0.988898 + . ID=CGI_10014515; scaffold1307 WUBlastX LINE_CR1 578188 578397 43 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_CR1-L2 670386 670589 35 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold204 WUBlastX LTR_Gypsy 754067 754096 21 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Copia 181067 181567 91 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 311042 311491 90 + . . scaffold1016 GLEAN mRNA 310747 311100 0.968712 + . ID=CGI_10016895; scaffold41164 WUBlastX DNA_hAT 44968 45108 66 + . . scaffold41164 GLEAN mRNA 42098 45655 0.999053 + . ID=CGI_10004761; scaffold41164 WUBlastX DNA_hAT 45455 45652 64 + . . scaffold41164 GLEAN mRNA 42098 45655 0.999053 + . ID=CGI_10004761; scaffold38920 WUBlastX DNA_hAT 62759 63178 65 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_hAT-Tip100 27091 27330 38 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX DNA_Academ 3936 4724 75 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX DNA_hAT-Tip100 477629 477964 79 + . . . . . -1 -1 -1 . . . scaffold734 WUBlastX LINE_CR1 20565 20867 87 - . . scaffold734 GLEAN mRNA 15567 24465 0.477862 - . ID=CGI_10003361; scaffold457 WUBlastX LINE_L2 223524 223733 82 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LTR_Gypsy 193253 193381 22 + . . . . . -1 -1 -1 . . . scaffold40216 WUBlastX DNA_Crypton 17568 18077 47 - . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_Crypton 35297 35536 78 - . . scaffold1782 GLEAN mRNA 27311 46530 0.718451 + . ID=CGI_10004241; scaffold1857 WUBlastX DNA_Crypton 977 1378 82 - . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Crypton 14291 14641 75 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LINE_L2 254102 254365 76 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_L2 135964 136098 104 + . . . . . -1 -1 -1 . . . scaffold37010 WUBlastX LTR_DIRS 30925 31092 49 - . . scaffold37010 GLEAN mRNA 9826 38663 0.529667 + . ID=CGI_10002196; scaffold304 WUBlastX LTR_DIRS 123497 123994 77 - . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX LTR_Gypsy 182344 182619 28 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 343561 343653 30 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold619 WUBlastX LTR_Gypsy 1048060 1048311 24 - . . scaffold619 GLEAN mRNA 1046287 1056122 0.495318 - . ID=CGI_10025798; C32778 WUBlastX DNA_En-Spm 6739 6891 43 - . . . . . -1 -1 -1 . . . C28622 WUBlastX DNA_Harbinger 323 508 25 + . . C28622 GLEAN mRNA 14 5093 0.332993 + . ID=CGI_10000452; scaffold39394 WUBlastX DNA_Harbinger 28300 28677 61 + . . scaffold39394 GLEAN mRNA 22219 28975 0.74041 + . ID=CGI_10003357; scaffold593 WUBlastX LTR_Gypsy 148794 149546 47 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy 295519 295602 26 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX RC_Helitron 194725 195426 41 - . . . . . -1 -1 -1 . . . scaffold36410 WUBlastX RC_Helitron 13955 14221 93 + . . scaffold36410 GLEAN mRNA 4689 21980 0.354487 - . ID=CGI_10001887; scaffold924 WUBlastX DNA_IS4EU 136232 136408 76 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 274236 274586 57 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX DNA_hAT-Ac 250497 250577 35 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_I 221010 221177 28 - . . scaffold954 GLEAN mRNA 220872 230195 0.904789 - . ID=CGI_10010745; scaffold999 WUBlastX DNA_IS4EU 165639 165812 23 + . . . . . -1 -1 -1 . . . scaffold1798 WUBlastX DNA_IS4EU 29348 29476 50 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX DNA_Kolobok-Hyd 687921 688256 51 - . . scaffold156 GLEAN mRNA 669682 693584 0.721042 - . ID=CGI_10026516; scaffold1369 WUBlastX LINE_L1-Tx1 2442 2696 78 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_L1 223161 223406 57 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_L1 295147 295491 77 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_L1 233183 233791 106 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold402 WUBlastX LINE_L1 517177 517326 59 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold1247 WUBlastX LINE_L1 112649 113146 61 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold1894 WUBlastX LINE_L1-Tx1 41994 42530 51 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold1391 WUBlastX LINE_L1-Tx1 480084 480368 81 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 471244 471480 27 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1157 WUBlastX LINE_L1 40178 40375 40 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_Penelope 930726 931091 67 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX DNA_TcMar-Fot1 394033 394575 21 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_PiggyBac 381360 381632 62 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX LINE_RTE-X 292052 292186 27 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_RTE-BovB 29322 29615 73 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_RTE-BovB 240354 240758 78 + . . scaffold833 GLEAN mRNA 240516 240821 0.96892 + . ID=CGI_10016737; scaffold43278 WUBlastX LINE_RTE-X 111421 111633 97 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LINE_RTE-X 478730 479146 31 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_RTE-X 52732 52863 22 + . . scaffold113 GLEAN mRNA 52825 53091 0.991235 + . ID=CGI_10021282; scaffold1877 WUBlastX LINE_RTE-X 242421 242465 26 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_RTE-X 216145 216543 65 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_RTE-X 953510 953815 44 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_RTE-X 397091 397336 77 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_RTE-BovB 1023349 1023753 61 + . . . . . -1 -1 -1 . . . scaffold793 WUBlastX LINE_RTE-BovB 1409 1516 47 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LTR_Gypsy 175902 176087 38 + . . scaffold1138 GLEAN mRNA 174466 179423 0.789389 + . ID=CGI_10015372; scaffold773 WUBlastX LINE_L1 284788 285108 73 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Harbinger 264448 264639 78 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 398549 398611 21 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_TcMar-Tc2 603820 604065 91 + . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX DNA_TcMar-Tc1 177273 177638 22 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Gypsy 200478 200561 55 - . . . . . -1 -1 -1 . . . scaffold33486 WUBlastX LINE_L1-Tx1 1118 1219 20 + . . . . . -1 -1 -1 . . . scaffold1548 WUBlastX LINE_L1-Tx1 599 1201 28 - . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_L1-Tx1 174992 175471 28 - . . scaffold421 GLEAN mRNA 170277 178992 0.999676 + . ID=CGI_10012155; scaffold675 WUBlastX DNA_TcMar-Marin 16013 16156 22 - . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX LINE_L1-Tx1 3 428 30 + . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LINE_L1-Tx1 105001 105237 93 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 347825 348085 57 - . . scaffold149 GLEAN mRNA 308246 356402 0.217101 + . ID=CGI_10025300; scaffold115 WUBlastX DNA_hAT-Tip100 129499 129840 94 + . . scaffold115 GLEAN mRNA 126783 131612 1 - . ID=CGI_10021378; scaffold184 WUBlastX DNA_PiggyBac 251291 251701 57 - . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold1244 WUBlastX LTR_Pao 163622 164086 34 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_CR1 337147 337380 22 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_CR1-L2 191562 191762 29 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_CR1-L2 58167 58649 69 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_CR1-L2 1706 1795 29 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_L2 239037 239354 79 - . . scaffold610 GLEAN mRNA 239004 244016 1 + . ID=CGI_10021102; scaffold211 WUBlastX LINE_CR1 698613 698894 58 - . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold42390 WUBlastX LINE_L2 112016 112348 38 - . . . . . -1 -1 -1 . . . scaffold39986 WUBlastX LINE_RTE-BovB 63834 64151 28 - . . . . . -1 -1 -1 . . . scaffold387 WUBlastX LTR_Gypsy 28933 29073 106 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold41594 WUBlastX LTR_Gypsy-Cigr 89447 89842 75 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L2 1211 1450 79 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L2 132674 133078 90 - . . scaffold631 GLEAN mRNA 131392 145592 0.831917 - . ID=CGI_10014172; scaffold42946 WUBlastX DNA_Crypton 202065 202154 55 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_Crypton 664356 664493 23 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_Crypton 664486 664962 36 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_Ngaro 197441 197800 103 - . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LTR_Ngaro 11414 11701 87 - . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold1119 WUBlastX DNA_IS4EU 36710 37039 24 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_IS4EU 37206 37292 34 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_hAT-hAT5 208712 208873 64 + . . scaffold1743 GLEAN mRNA 206587 209579 0.614112 + . ID=CGI_10011657; scaffold1845 WUBlastX LTR_Gypsy 302695 302883 29 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 988091 988837 86 + . . scaffold1532 GLEAN mRNA 980578 997386 0.999875 - . ID=CGI_10028278; scaffold514 WUBlastX LTR_Gypsy 457183 457326 29 - . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold71 WUBlastX DNA_Harbinger 226811 226966 57 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX DNA_Harbinger 227387 227548 31 - . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX DNA_TcMar-Tc2 27155 27706 94 + . . . . . -1 -1 -1 . . . scaffold636 WUBlastX DNA_TcMar-Marin 74358 74648 66 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_TcMar-Fot1 754615 754935 27 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX DNA_TcMar-Fot1 250865 251083 53 - . . . . . -1 -1 -1 . . . scaffold1635 WUBlastX DNA_TcMar-Tc1 29699 29827 56 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_L2 254221 254787 42 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_Penelope 188304 188723 23 - . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX LINE_RTE-X 378644 378913 95 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_RTE-X 274682 275104 52 - . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LINE_RTE-X 7577 7906 79 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_RTE-X 68447 69013 42 - . . . . . -1 -1 -1 . . . scaffold40184 WUBlastX LINE_RTE-X 36278 36505 93 - . . . . . -1 -1 -1 . . . scaffold40740 WUBlastX LINE_RTE-X 71838 72092 36 - . . scaffold40740 GLEAN mRNA 67016 76678 0.282731 - . ID=CGI_10004398; scaffold115 WUBlastX LINE_RTE-X 281087 281857 32 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_RTE-X 169431 169607 25 + . . scaffold1868 GLEAN mRNA 166977 179463 0.984982 - . ID=CGI_10007985; scaffold40454 WUBlastX LINE_RTE-BovB 83456 83626 37 + . . scaffold40454 GLEAN mRNA 83347 90444 1 - . ID=CGI_10004122; scaffold32912 WUBlastX LINE_RTE-X 4217 4417 103 + . . . . . -1 -1 -1 . . . scaffold35712 WUBlastX LINE_Proto2 6080 6178 21 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold625 WUBlastX LINE_RTE-X 163805 164032 41 - . . . . . -1 -1 -1 . . . C11584 WUBlastX LINE_RTE-X 1 177 95 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 1075246 1075644 43 + . . . . . -1 -1 -1 . . . scaffold793 WUBlastX LINE_RTE-X 133382 133729 98 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LINE_L1-Tx1 62864 63028 61 - . . . . . -1 -1 -1 . . . scaffold36736 WUBlastX LTR_DIRS 33915 34442 50 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_L1-Tx1 294319 294510 24 - . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_L2 16494 16907 31 + . . . . . -1 -1 -1 . . . scaffold32646 WUBlastX LINE_L2 1932 2207 49 - . . . . . -1 -1 -1 . . . scaffold32646 WUBlastX LINE_L2 2245 2376 48 - . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L2 26441 26911 75 + . . . . . -1 -1 -1 . . . C10675 WUBlastX LINE_L2 1 165 132 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_L2 3877 3942 23 + . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LINE_L2 286968 287333 27 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_CR1 67336 67644 116 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L2 10640 10843 106 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_CR1-L2 15977 16372 20 + . . scaffold146 GLEAN mRNA 11178 24512 0.999234 + . ID=CGI_10024878; scaffold1736 WUBlastX LINE_CR1 205267 205440 35 + . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 28185 28370 21 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_CR1-L2 28620 28871 104 + . . . . . -1 -1 -1 . . . scaffold42060 WUBlastX LINE_CR1-L2 1145 1492 83 + . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX LINE_CR1-L2 43412 43636 124 + . . . . . -1 -1 -1 . . . scaffold40560 WUBlastX LINE_L1 35488 35679 29 - . . . . . -1 -1 -1 . . . scaffold722 WUBlastX LINE_Jockey 299682 299990 28 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_CR1 254389 254586 54 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_CR1-L2 196351 196422 23 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_DIRS 84457 84720 51 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_DIRS 84684 84866 28 - . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LTR_Ngaro 40618 40800 68 - . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_L2 460941 461468 78 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_DIRS 885222 885554 62 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_En-Spm 191071 191367 28 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold773 WUBlastX LTR_Ngaro 19771 19938 55 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1323237 1323683 74 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1323686 1323904 33 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy 2 355 86 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Kolobok 319585 319653 33 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX DNA_Harbinger 205480 205656 37 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX DNA_Harbinger 205673 205822 78 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_Harbinger 72839 73495 100 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 129884 130540 69 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold1177 WUBlastX LTR_Gypsy 36749 37099 71 + . . . . . -1 -1 -1 . . . scaffold37134 WUBlastX LTR_Gypsy 6387 6479 23 + . . . . . -1 -1 -1 . . . scaffold1751 WUBlastX DNA_hAT-Blackja 11501 11800 83 - . . scaffold1751 GLEAN mRNA 1921 19795 0.705782 - . ID=CGI_10010082; scaffold43314 WUBlastX DNA_hAT-hATw 150976 151296 49 - . . . . . -1 -1 -1 . . . scaffold647 WUBlastX DNA_Harbinger 153400 153693 122 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX DNA_Harbinger 295118 295327 116 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX DNA_IS4EU 188453 188971 74 + . . scaffold482 GLEAN mRNA 188426 188974 1 + . ID=CGI_10011000; scaffold1188 WUBlastX LINE_Penelope 216559 216909 67 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold1403 WUBlastX LINE_Penelope 320291 320638 82 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_I-Nimb 66093 66365 100 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_Penelope 750611 751186 60 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 258559 259305 46 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1061 WUBlastX LINE_Jockey 112256 112468 76 + . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX DNA_Kolobok-Hyd 475190 475258 32 - . . . . . -1 -1 -1 . . . C22998 WUBlastX LINE_L1 144 341 52 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L1 457033 457200 109 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Maverick 1456611 1456754 20 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Maverick 1456761 1456994 66 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX DNA_PiggyBac 641537 641683 54 - . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_RTE-BovB 3 161 81 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_RTE-X 447774 447935 107 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_RTE-X 174479 174535 22 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 57216 57737 50 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_TcMar-Tc1 722845 723222 55 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_L1-Tx1 437088 437765 63 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L1-Tx1 1259075 1259431 66 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 79248 79418 56 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_CR1 71964 72293 67 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_CR1 121010 121114 24 - . . . . . -1 -1 -1 . . . scaffold38524 WUBlastX LINE_L2 42599 43375 58 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_L2 585486 585662 102 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy 605964 606152 139 + . . . . . -1 -1 -1 . . . scaffold820 WUBlastX LTR_Gypsy 9098 10081 23 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 161652 162611 76 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Gypsy 512023 512397 110 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold1805 WUBlastX LINE_L2 26691 27407 78 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Ngaro 520090 520596 57 - . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_DIRS 43958 44011 23 + . . . . . -1 -1 -1 . . . scaffold39526 WUBlastX LTR_Ngaro 62539 63204 64 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 514616 514999 93 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX DNA_IS4EU 188657 188971 120 + . . scaffold482 GLEAN mRNA 188426 188974 1 + . ID=CGI_10011000; scaffold425 WUBlastX DNA_IS4EU 128955 129554 117 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1750 WUBlastX LINE_Jockey 17462 17530 24 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; C27812 WUBlastX LTR_Gypsy 2376 2906 36 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 456412 456777 83 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Gypsy 134698 135129 32 - . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_L1-Tx1 26579 26812 40 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1189 WUBlastX LINE_L1 711247 711747 23 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_L1 193629 194171 23 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_L1 155386 155457 45 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_L1 515493 515780 119 - . . . . . -1 -1 -1 . . . scaffold38048 WUBlastX DNA_TcMar-Tc1 33366 34202 93 + . . scaffold38048 GLEAN mRNA 5473 39952 0.557382 + . ID=CGI_10002589; scaffold32666 WUBlastX LINE_Penelope 9276 9599 59 + . . . . . -1 -1 -1 . . . scaffold322 WUBlastX DNA_P 202091 202225 65 + . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_Penelope 142552 142917 107 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_Penelope 69320 69904 55 - . . . . . -1 -1 -1 . . . scaffold41806 WUBlastX LINE_RTE-X 65317 65580 99 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 50817 51062 81 + . . scaffold3 GLEAN mRNA 34173 61876 0.984416 - . ID=CGI_10027268; scaffold3 WUBlastX LINE_RTE-X 50817 51062 81 + . . scaffold3 GLEAN mRNA 47892 52805 0.999676 + . ID=CGI_10027269; scaffold386 WUBlastX LINE_RTE-X 166845 167225 85 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 87347 87616 72 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_RTE-X 317611 317769 69 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-BovB 1260162 1260389 105 - . . scaffold86 GLEAN mRNA 1231261 1279248 0.605603 + . ID=CGI_10028197; scaffold115 WUBlastX DNA_PiggyBac 380074 380397 42 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 59454 60206 106 + . . . . . -1 -1 -1 . . . scaffold951 WUBlastX LINE_R2 198432 199337 35 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_RTE-X 973114 973656 27 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-X 215690 216058 50 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX DNA_Sola 11433 11759 110 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1-Tx1 837364 837756 60 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_L1-Tx1 114507 114881 40 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LINE_L1-Tx1 604628 605227 49 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LINE_L1-Tx1 605545 605607 22 + . . . . . -1 -1 -1 . . . scaffold564 WUBlastX LINE_L1-Tx1 9439 9807 89 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_Zator 604847 605071 29 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_Zator 605687 606163 43 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_CR1-L2 48434 48481 20 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_CR1-L2 48579 48794 81 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L2 61004 61591 81 - . . . . . -1 -1 -1 . . . scaffold907 WUBlastX LINE_CR1-L2 14155 14460 51 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_CR1 256963 257529 76 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_DIRS 470298 470795 92 + . . . . . -1 -1 -1 . . . scaffold39960 WUBlastX LTR_Gypsy-Cigr 49958 50530 106 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LTR_Copia 149833 149985 21 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold85 WUBlastX LINE_CR1 607724 608083 131 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 377249 377398 35 + . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LINE_L2 7409 7741 92 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 923452 923559 41 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 2863 3177 117 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX DNA_TcMar-Tc2 277481 277873 100 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX DNA_TcMar-Tc2 278210 278512 26 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_Gypsy 545446 545691 119 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 315815 315964 23 + . . . . . -1 -1 -1 . . . scaffold635 WUBlastX DNA_Harbinger 107312 107575 107 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_IS4EU 308948 309244 124 - . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX DNA_IS4EU 42454 42606 66 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX DNA_IS4EU 118410 118571 58 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX DNA_IS4EU 118998 119381 31 - . . . . . -1 -1 -1 . . . scaffold43302 WUBlastX DNA_Kolobok-IS4 15627 15950 54 + . . scaffold43302 GLEAN mRNA 6372 24073 0.277786 - . ID=CGI_10009755; scaffold1671 WUBlastX RC_Helitron 227283 227429 108 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold38130 WUBlastX DNA_Helitron 16526 17143 76 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_MuDR 100096 100689 95 + . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L2 20015 20347 126 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_RTE-X 198467 198556 37 - . . . . . -1 -1 -1 . . . scaffold32230 WUBlastX DNA_MuDR 2553 2810 68 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX DNA_Maverick 157937 158317 58 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 308466 308996 48 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-BovB 48881 49039 25 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LINE_RTE-X 178748 179020 132 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_RTE-X 222120 222569 74 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_RTE-X 574597 574812 128 + . . scaffold43 GLEAN mRNA 558255 582492 0.807709 - . ID=CGI_10021361; scaffold1017 WUBlastX LINE_RTE-X 86706 86858 70 + . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 322456 322734 95 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_L1-Tx1 17954 18358 83 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_L1-Tx1 116492 116899 51 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L2 76370 76738 92 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Pao 504421 505299 110 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Pao 504409 505092 113 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_CR1-L2 216126 216629 73 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_CR1-L2 457766 457840 24 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_CR1-L2 428849 429319 56 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LTR_Gypsy 2588 3004 137 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold41248 WUBlastX LTR_Ngaro 41064 41429 35 - . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX DNA_Helitron 3505 3987 95 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX DNA_Kolobok-IS4 219172 219441 108 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_IS4EU 118227 118982 68 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 231773 232549 23 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 232641 232934 61 - . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX LTR_Gypsy 8897 9511 75 + . . . . . -1 -1 -1 . . . C25486 WUBlastX LTR_Gypsy 3050 3100 20 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LTR_Gypsy 43064 43348 151 - . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX DNA_Kolobok 114952 115125 61 - . . scaffold43272 GLEAN mRNA 114590 115074 1 - . ID=CGI_10009668; scaffold574 WUBlastX DNA_TcMar-Fot1 55802 55936 50 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_TcMar-Fot1 421985 422461 29 + . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LINE_Penelope 110437 111084 93 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_Penelope 54999 55622 44 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1 99931 100122 61 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold1107 WUBlastX LINE_L1 42293 42397 23 - . . scaffold1107 GLEAN mRNA 25384 68274 0.797312 + . ID=CGI_10004768; scaffold1004 WUBlastX LINE_L1 195169 196095 89 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LINE_L1-Tx1 44695 45369 25 - . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_Penelope 78 215 46 + . . . . . -1 -1 -1 . . . scaffold955 WUBlastX LINE_RTE-BovB 119552 119665 37 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold85 WUBlastX LTR_Gypsy 634689 636224 51 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold448 WUBlastX LINE_L1-Tx1 388371 388871 52 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L1-Tx1 203683 204072 133 - . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LINE_L1-Tx1 42431 42499 26 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc1 268580 268732 33 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_CR1-L2 36967 37668 138 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_CR1 851327 851671 30 - . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LTR_Ngaro 227796 228416 70 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Academ 1252 1752 62 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Academ 548450 548989 41 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_En-Spm 190383 190748 126 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_DIRS 86741 87268 53 - . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 58590 58757 24 - . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX DNA_Kolobok 64910 65299 49 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold32230 WUBlastX LTR_Gypsy 10813 11091 150 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 245102 245368 107 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_Harbinger 27847 28113 40 + . . scaffold40680 GLEAN mRNA 27135 28116 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27847 28113 40 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; C12066 WUBlastX DNA_hAT-Tip100 3 185 155 + . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LINE_L1 95332 95844 111 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_Penelope 178281 178703 123 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX DNA_TcMar-Fot1 10262 10672 47 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX DNA_TcMar-Tc1 511524 511691 33 - . . . . . -1 -1 -1 . . . scaffold33704 WUBlastX DNA_Maverick 3981 4406 136 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Maverick 332858 333082 141 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX LINE_RTE-X 41881 42123 67 + . . . . . -1 -1 -1 . . . scaffold258 WUBlastX LINE_RTE-X 280085 280537 118 - . . . . . -1 -1 -1 . . . C29186 WUBlastX LINE_RTE-X 2 283 142 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 380760 380843 44 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LTR_Ngaro 39512 39718 34 + . . . . . -1 -1 -1 . . . scaffold42252 WUBlastX LINE_RTE-X 1203 1712 45 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 99360 99809 73 + . . . . . -1 -1 -1 . . . scaffold42604 WUBlastX DNA_TcMar-Tc1 108271 108453 91 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_L1-Tx1 886758 887360 35 - . . scaffold79 GLEAN mRNA 880710 892247 1 + . ID=CGI_10024653; scaffold101 WUBlastX LINE_L1-Tx1 385431 385766 93 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L2 616152 616268 21 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L2 84299 84592 121 - . . scaffold290 GLEAN mRNA 78200 85856 0.613006 - . ID=CGI_10018533; scaffold42448 WUBlastX LINE_L1 77896 78339 78 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LTR_Gypsy-Cigr 403904 404026 37 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LTR_Gypsy-Cigr 404050 404379 108 + . . . . . -1 -1 -1 . . . scaffold42440 WUBlastX DNA_Merlin 44148 44531 104 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 50807 50872 26 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX DNA_Crypton 3871 4269 97 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 800252 800416 58 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold40368 WUBlastX LTR_Ngaro 39185 39448 98 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 719782 720069 156 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX RC_Helitron 37675 38247 113 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold40556 WUBlastX LINE_R2-Hero 80851 81366 109 + . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LINE_R2-Hero 81365 81520 37 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy 284131 284451 127 - . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX DNA_TcMar-Marin 26413 26970 124 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 189614 189805 69 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_Penelope 604089 604838 79 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L1 127581 128111 151 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-BovB 483483 483854 54 - . . scaffold593 GLEAN mRNA 482551 496845 0.997605 + . ID=CGI_10022532; scaffold593 WUBlastX LINE_RTE-BovB 484677 485102 81 - . . scaffold593 GLEAN mRNA 482551 496845 0.997605 + . ID=CGI_10022532; scaffold401 WUBlastX LINE_RTE-X 156135 156413 99 - . . scaffold401 GLEAN mRNA 151217 157765 0.728444 + . ID=CGI_10006994; scaffold1885 WUBlastX DNA_PiggyBac 203964 204398 154 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LTR_DIRS 124384 125412 91 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Sola 316781 317398 119 - . . scaffold1703 GLEAN mRNA 316892 317053 0.865902 - . ID=CGI_10023053; scaffold59 WUBlastX LINE_L1-Tx1 79779 79844 20 + . . . . . -1 -1 -1 . . . scaffold487 WUBlastX DNA_TcMar-Tc1 55510 55701 82 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_TcMar-Tc1 100122 100886 68 - . . . . . -1 -1 -1 . . . scaffold42112 WUBlastX LTR_Gypsy 67707 68018 77 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1-Tx1 93054 93746 160 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1-Tx1 96258 96416 87 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L1-Tx1 15428 15619 71 - . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_RTE-BovB 317263 317913 309 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold40 WUBlastX DNA_Academ 255366 255647 95 - . . scaffold40 GLEAN mRNA 252666 257460 0.323172 - . ID=CGI_10015106; scaffold721 WUBlastX LINE_L2 17148 17597 61 + . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 30201 30461 59 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_L2 157574 158776 873 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 994203 994403 34 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 994406 995161 71 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 995137 995880 622 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX RC_Helitron 176154 176501 145 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX RC_Helitron 177227 177484 86 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 652921 654924 725 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 538161 540005 809 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_L1-Tx1 4303 4698 113 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_L1-Tx1 4652 5227 451 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_L1-Tx1 5224 5721 218 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Maverick 137854 138381 169 + . . . . . -1 -1 -1 . . . scaffold41896 WUBlastX LINE_L2 27878 28336 57 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 541465 542196 373 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 542189 542374 92 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 542367 542936 441 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Gypsy 51086 51310 39 + . . . . . -1 -1 -1 . . . scaffold38908 WUBlastX LINE_RTE-X 59633 60478 313 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_L2 530364 530933 156 - . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_L2 105615 105932 121 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 616104 616634 148 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 545996 546271 143 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 546267 546473 25 - . . . . . -1 -1 -1 . . . C29982 WUBlastX LTR_Gypsy 3 335 147 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX DNA_Helitron 74378 74935 137 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_IS4EU 97164 98504 95 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_IS4EU 247877 248089 72 + . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX DNA_TcMar-Marin 276392 276826 169 + . . scaffold43818 GLEAN mRNA 259212 278747 0.997869 + . ID=CGI_10012774; scaffold38546 WUBlastX LINE_L1-Tx1 21292 21897 53 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L1-Tx1 50580 50867 88 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold175 WUBlastX LINE_L1 60653 60748 22 - . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LINE_RTE-X 140062 140427 36 - . . . . . -1 -1 -1 . . . scaffold1652 WUBlastX LINE_RTE-X 244668 244916 28 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_RTE-X 97297 97785 86 - . . scaffold43794 GLEAN mRNA 82340 100661 0.914367 - . ID=CGI_10012417; scaffold711 WUBlastX LTR_Ngaro 134228 134470 126 + . . . . . -1 -1 -1 . . . C31246 WUBlastX LINE_L1-Tx1 5312 5926 76 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1040971 1041615 307 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1042011 1042229 58 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy-Cigr 392038 393576 551 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Gypsy 212758 214686 444 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold825 WUBlastX LINE_L1-Tx1 90413 90847 83 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 545524 545931 435 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 546619 547725 525 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 416968 419316 697 - . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Ngaro 12653 14209 1009 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 300096 300581 22 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 265752 266543 361 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX RC_Helitron 692550 693317 295 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold1021 WUBlastX RC_Helitron 695388 695723 208 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold1484 WUBlastX LTR_Pao 141225 142409 1123 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Ngaro 505125 505436 203 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1-Tx1 219476 220276 128 - . . . . . -1 -1 -1 . . . scaffold1296 WUBlastX LTR_Copia 240 572 41 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_CR1 265066 265434 56 + . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX DNA_Academ 43478 43816 47 - . . scaffold1757 GLEAN mRNA 43472 43939 0.579796 - . ID=CGI_10005113; scaffold447 WUBlastX LINE_CR1 337298 337948 34 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold728 WUBlastX DNA_En-Spm 437606 438181 104 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1004581 1005066 157 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 518853 518981 20 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 181481 181651 20 + . . . . . -1 -1 -1 . . . scaffold34910 WUBlastX LTR_Gypsy-Cigr 7780 8118 150 - . . . . . -1 -1 -1 . . . scaffold38292 WUBlastX LTR_Gypsy-Cigr 46434 47066 170 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold1262 WUBlastX LTR_Gypsy 543458 543613 83 + . . . . . -1 -1 -1 . . . scaffold35694 WUBlastX LINE_R2-Hero 17450 17569 28 - . . . . . -1 -1 -1 . . . scaffold35694 WUBlastX LINE_R2-Hero 18947 19123 82 - . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_R2-Hero 186426 186989 60 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_R2-Hero 187329 187415 31 + . . . . . -1 -1 -1 . . . scaffold33026 WUBlastX DNA_hAT-Tip100 4414 5040 175 - . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX DNA_IS4EU 207021 207359 152 + . . scaffold1031 GLEAN mRNA 202896 208011 0.999658 - . ID=CGI_10019698; scaffold191 WUBlastX DNA_Kolobok-IS4 1819 2163 82 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_Gypsy 16309 16446 59 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold1017 WUBlastX LTR_Gypsy 632294 632545 130 + . . . . . -1 -1 -1 . . . scaffold39040 WUBlastX LINE_L1-Tx1 26936 27094 20 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX DNA_TcMar-Tc2 40759 41754 179 + . . scaffold38552 GLEAN mRNA 40163 55847 0.999674 + . ID=CGI_10002839; scaffold1844 WUBlastX LINE_L2 137135 137395 28 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_Penelope 958207 958854 160 + . . scaffold1532 GLEAN mRNA 956349 969868 0.999878 + . ID=CGI_10028276; scaffold43742 WUBlastX LINE_RTE-BovB 233383 233559 106 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_RTE-BovB 233538 233852 90 - . . . . . -1 -1 -1 . . . C30072 WUBlastX LINE_RTE-BovB 4385 4663 109 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_Rex-Babar 169029 169085 23 + . . . . . -1 -1 -1 . . . scaffold1136 WUBlastX LINE_RTE-X 46060 46464 158 + . . scaffold1136 GLEAN mRNA 45613 63125 0.999895 + . ID=CGI_10003080; scaffold721 WUBlastX LINE_RTE-X 594330 594929 115 - . . scaffold721 GLEAN mRNA 582991 607417 0.998859 - . ID=CGI_10022014; scaffold432 WUBlastX LINE_RTE-X 82727 83086 134 + . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX DNA_Sola 22420 22893 102 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L1-Tx1 6417 6704 76 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1-Tx1 99599 99844 92 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold1574 WUBlastX LINE_L1-Tx1 127492 127536 20 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc1 732429 732785 35 + . . . . . -1 -1 -1 . . . scaffold18 WUBlastX DNA_hAT-Tip100 2460 2612 20 + . . . . . -1 -1 -1 . . . C30294 WUBlastX LTR_DIRS 2073 2159 39 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L1-Tx1 386489 387721 367 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L1-Tx1 388303 388617 143 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L1-Tx1 388569 388853 220 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L1-Tx1 388850 389419 331 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Gypsy 54069 54722 107 + . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LTR_Gypsy 1934 2737 146 - . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L1-Tx1 2174 2986 60 - . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L1-Tx1 3027 3548 205 - . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L1-Tx1 4432 5340 512 - . . . . . -1 -1 -1 . . . C26108 WUBlastX LINE_L2 2293 2700 125 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LINE_L2 12676 13083 125 + . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; C26950 WUBlastX LINE_L2 2299 2799 128 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 109122 109421 20 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_DIRS 144703 145071 165 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Gypsy 382667 383032 36 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1369283 1369669 52 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1370108 1370623 149 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Harbinger 115359 115502 81 + . . . . . -1 -1 -1 . . . scaffold387 WUBlastX DNA_IS4EU 96101 96346 94 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_hAT-Ac 87236 87373 104 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_hAT-Ac 87778 88320 84 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX RC_Helitron 43757 43867 24 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold1024 WUBlastX RC_Helitron 122373 122600 188 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LINE_RTE-X 316711 317028 75 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX DNA_TcMar-Marin 46400 46540 28 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 805561 806037 132 - . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 170379 170801 71 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold1016 WUBlastX LINE_L1-Tx1 133054 133371 59 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Academ 259693 260319 448 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Academ 260564 261124 350 - . . scaffold550 GLEAN mRNA 260447 260869 0.579462 - . ID=CGI_10012496; scaffold550 WUBlastX DNA_Academ 261168 261380 133 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Academ 261385 262245 343 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_En-Spm 166205 166543 190 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Ngaro 306062 307438 1034 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_RTE-X 124645 126927 768 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_DIRS 783482 784759 510 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 268436 268531 92 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 268488 268901 419 - . . . . . -1 -1 -1 . . . scaffold1641 WUBlastX LINE_L1-Tx1 296372 297613 841 + . . . . . -1 -1 -1 . . . scaffold1641 WUBlastX LINE_L1-Tx1 297658 298626 152 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy-Cigr 27830 28564 538 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LTR_Gypsy 122494 123006 178 - . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LINE_L2 44055 45140 109 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1133439 1133594 59 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX DNA_Harbinger 171627 171932 167 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_L1 224957 225781 88 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX DNA_NOF? 116350 116793 129 + . . . . . -1 -1 -1 . . . C15466 WUBlastX LINE_Penelope 14 304 172 + . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LINE_RTE-X 64378 64917 114 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-X 981377 981547 77 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_RTE-X 627627 627938 26 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold1816 WUBlastX LINE_Rex-Babar 299276 299332 33 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-BovB 306404 306730 49 + . . scaffold1462 GLEAN mRNA 305995 331618 0.999054 - . ID=CGI_10014383; scaffold1462 WUBlastX LINE_RTE-BovB 306724 306948 90 + . . scaffold1462 GLEAN mRNA 305995 331618 0.999054 - . ID=CGI_10014383; scaffold71 WUBlastX LINE_RTE-X 193437 193697 44 + . . . . . -1 -1 -1 . . . scaffold37520 WUBlastX DNA_Harbinger 40647 41153 161 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Sola 1160613 1161602 182 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold29316 WUBlastX LINE_RTE-X 3963 5006 129 - . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LTR_Gypsy 156368 157321 657 - . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LTR_Gypsy 157318 158121 696 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_CR1 451402 452883 625 + . . scaffold789 GLEAN mRNA 449746 456527 1 + . ID=CGI_10017205; scaffold163 WUBlastX LTR_Gypsy-Cigr 480283 482130 822 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold157 WUBlastX LTR_Gypsy 15295 16908 1401 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 614528 614683 39 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 614746 614820 26 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Pao 342267 342878 165 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 214297 214662 171 + . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LTR_Ngaro 126103 126351 132 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 423830 424264 181 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_DIRS 60664 60810 52 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 467743 467961 37 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 312035 312217 113 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold1131 WUBlastX DNA_Harbinger 120720 120833 27 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 71854 72513 192 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX DNA_Kolobok-IS4 223128 223421 93 - . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX DNA_Kolobok-IS4 35526 35732 21 + . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold680 WUBlastX LTR_Ngaro 4328 4780 155 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1 335590 335952 113 + . . . . . -1 -1 -1 . . . scaffold952 WUBlastX LINE_L1-Tx1 23431 23994 51 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold626 WUBlastX LINE_L1 354277 354744 27 - . . . . . -1 -1 -1 . . . scaffold37032 WUBlastX LINE_RTE-X 390 749 131 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 367084 367260 36 + . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX LINE_L1-Tx1 330513 330764 84 - . . . . . -1 -1 -1 . . . C33256 WUBlastX DNA_TcMar-Tc1 6829 6999 31 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Gypsy 124927 125337 376 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 126543 126998 162 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold39196 WUBlastX DNA_Maverick 62912 63220 111 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 1151903 1153204 728 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 1153209 1153520 297 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 1153529 1153936 345 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 1153897 1154238 83 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy-Cigr 635274 635873 194 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; C30662 WUBlastX LINE_CR1-L2 3697 4386 165 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_CR1 359464 359766 106 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_L2 163051 163608 152 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_L2 392579 393328 143 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1-L2 650561 650752 20 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_DIRS 250189 251064 89 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold1316 WUBlastX LINE_Jockey 103074 103181 24 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX DNA_Harbinger 39963 40115 87 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_Harbinger 536673 536807 31 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_Harbinger 536806 537288 155 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Harbinger 115888 116205 135 + . . . . . -1 -1 -1 . . . scaffold32786 WUBlastX DNA_IS4EU 7657 8349 184 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_L1 66592 66987 196 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_Penelope 368969 369079 43 + . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX LINE_RTE-BovB 38619 39110 24 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-X 254745 255248 155 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-X 442559 442864 21 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy-Troyk 52462 52914 57 + . . . . . -1 -1 -1 . . . scaffold397 WUBlastX LINE_L1-Tx1 12443 12847 197 + . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_L1-Tx1 31597 31995 81 + . . . . . -1 -1 -1 . . . scaffold1600 WUBlastX LTR_Gypsy 251310 251981 180 + . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy-Cigr 33215 34750 533 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Pao 24126 25019 709 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LTR_Pao 11184 12035 334 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LTR_Pao 12609 12902 257 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LTR_Pao 12917 13207 144 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LTR_Pao 13311 13526 151 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LTR_Pao 13517 14338 769 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_L2 264737 265060 127 + . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LTR_DIRS 82236 82562 211 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L2 1216428 1217159 174 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold298 WUBlastX LTR_DIRS 406495 407217 189 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX DNA_En-Spm 130827 132251 117 + . . . . . -1 -1 -1 . . . scaffold39384 WUBlastX LTR_Gypsy 45330 45533 64 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 258636 259130 197 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 200891 201763 90 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 202223 202531 35 - . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX LINE_RTE-BovB 17048 17167 51 - . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX LINE_RTE-BovB 17423 17803 179 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LINE_RTE-X 208676 208831 49 - . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_RTE-X 48400 48765 170 - . . . . . -1 -1 -1 . . . C31884 WUBlastX LTR_Gypsy-Cigr 1684 2070 50 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_L1-Tx1 184193 184606 110 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX DNA_TcMar-Tc1 293951 294643 62 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 627195 627569 130 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 627496 627915 221 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; C31300 WUBlastX LTR_Gypsy 8590 8643 26 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy 169285 169914 158 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold1586 WUBlastX LTR_DIRS 30230 32449 1116 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 134491 135636 209 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 93855 94085 79 - . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy 110000 110257 267 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_CR1-L2 1610570 1610653 64 + . . scaffold150 GLEAN mRNA 1609311 1613969 0.550073 + . ID=CGI_10028691; scaffold388 WUBlastX LINE_CR1-L2 631713 631970 80 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LTR_DIRS? 345315 345644 200 + . . scaffold1037 GLEAN mRNA 341684 347440 0.722718 + . ID=CGI_10017464; scaffold914 WUBlastX LTR_Ngaro 366072 366548 200 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Ngaro 219777 220445 206 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 101957 102349 178 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_Harbinger 27337 27693 144 + . . scaffold40680 GLEAN mRNA 27135 28116 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27337 27693 144 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold619 WUBlastX DNA_hAT-Ac 487930 488070 27 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold41898 WUBlastX DNA_TcMar-Fot1 121412 122089 123 - . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LINE_L1-Tx1 16046 16189 33 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_RTE-X 138512 139063 183 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX DNA_Maverick 99694 100056 171 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-X 33306 33485 42 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L1-Tx1 40775 41068 47 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold508 WUBlastX LINE_CR1 215408 216001 100 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 33862 37578 1634 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 40890 44606 1634 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1-Tx1 12168 14249 1161 + . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1-Tx1 14195 14434 149 + . . . . . -1 -1 -1 . . . scaffold37500 WUBlastX LINE_L2 27306 28184 479 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_L2 28172 28699 321 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_L2 28678 29166 277 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_L2 29154 30365 464 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold312 WUBlastX DNA_Maverick 40586 40831 125 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_CR1-L2 866315 866614 78 + . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX DNA_hAT 468735 469052 109 + . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX DNA_hAT 469188 469505 109 + . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX LINE_CR1-L2 59991 60515 182 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Ngaro 1024363 1024755 127 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold351 WUBlastX LINE_Penelope 102689 103408 167 + . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold728 WUBlastX LINE_RTE-X 208258 208932 105 - . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_RTE-X 111747 112100 65 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_RTE-X 113536 113595 21 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_L1-Tx1 335060 335581 223 - . . scaffold152 GLEAN mRNA 326766 349856 0.295405 + . ID=CGI_10014899; scaffold222 WUBlastX LTR_DIRS 144093 146918 1650 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LTR_Gypsy-Cigr 63902 64510 401 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 355058 355765 524 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 357527 358225 405 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 358838 359311 108 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 359330 359887 61 - . . . . . -1 -1 -1 . . . scaffold35072 WUBlastX LTR_Gypsy 16573 18687 1396 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_L2 170615 170980 46 + . . scaffold1 GLEAN mRNA 163980 185527 0.742263 + . ID=CGI_10013469; scaffold975 WUBlastX LINE_L2 225303 226166 162 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 371572 372162 193 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 321386 321625 102 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LTR_DIRS 358598 359218 131 - . . . . . -1 -1 -1 . . . scaffold187 WUBlastX LTR_Ngaro 16010 16228 48 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LTR_Gypsy 311677 312117 182 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_hAT-Tip100 105810 106400 182 + . . . . . -1 -1 -1 . . . C31846 WUBlastX LINE_L1 53 139 38 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-BovB 277691 278074 179 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_RTE-BovB 103534 104346 135 + . . . . . -1 -1 -1 . . . scaffold34236 WUBlastX LINE_RTE-BovB 10557 10844 180 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX DNA_Sola 115530 116327 116 - . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1-Tx1 141834 142085 46 + . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_Zorro 131150 131284 20 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Zator 959901 960446 147 - . . scaffold77 GLEAN mRNA 957081 962570 1 + . ID=CGI_10028013; scaffold77 WUBlastX DNA_Zator 959901 960446 147 - . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold77 WUBlastX DNA_Zator 960576 960713 75 - . . scaffold77 GLEAN mRNA 957081 962570 1 + . ID=CGI_10028013; scaffold77 WUBlastX DNA_Zator 960825 961166 20 - . . scaffold77 GLEAN mRNA 957081 962570 1 + . ID=CGI_10028013; scaffold1123 WUBlastX LTR_Gypsy 205565 205909 36 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 131311 133029 1161 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 133588 135258 320 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 1257956 1258789 340 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 1258786 1259781 729 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 1259781 1261070 253 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LTR_Pao 94232 95134 101 + . . scaffold632 GLEAN mRNA 94211 107626 0.991776 + . ID=CGI_10018438; scaffold582 WUBlastX LTR_Gypsy 39200 39706 430 - . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 39699 40136 349 - . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 40535 41044 495 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Pao 82338 83054 228 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 83174 83869 256 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 84135 84611 321 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold19 WUBlastX LTR_DIRS 198993 199169 43 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold336 WUBlastX LINE_L2 216939 217262 168 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold1789 WUBlastX LINE_L2 34498 35178 220 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_CR1-L2 199129 199674 168 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_L2-Hydra 2723 3019 60 - . . . . . -1 -1 -1 . . . scaffold1002 WUBlastX LINE_L2 76997 77371 249 - . . . . . -1 -1 -1 . . . scaffold41054 WUBlastX LTR_DIRS 40851 41315 245 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX DNA_hAT-hATw 275465 275857 43 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_L1-Tx1 34233 34763 137 - . . scaffold43878 GLEAN mRNA 19366 41477 0.131804 - . ID=CGI_10013710; scaffold37430 WUBlastX LTR_Pao 40634 41149 225 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold43194 WUBlastX LTR_Gypsy 215300 216859 1169 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX DNA_Academ 26386 26589 68 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold222 WUBlastX LTR_Pao 88150 88278 29 + . . . . . -1 -1 -1 . . . C30224 WUBlastX LINE_CR1 4835 4888 25 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_DIRS 463070 463951 116 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold34610 WUBlastX DNA_Harbinger 10084 10326 73 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Harbinger 114875 115048 107 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok-IS4 1476144 1476809 86 - . . . . . -1 -1 -1 . . . C34552 WUBlastX DNA_Kolobok-IS4 14164 14256 33 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Penelope 1031186 1031842 196 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_Penelope 357380 357544 35 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-X 628610 629374 103 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold113 WUBlastX LTR_Gypsy 540044 540706 257 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 677220 677990 158 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 678713 679279 392 + . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX LTR_Gypsy 6148 8148 962 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 549026 550378 219 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold41898 WUBlastX LTR_Gypsy 63413 63610 93 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 64834 65913 503 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 65904 66017 53 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_CR1 456958 457617 224 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Gypsy-Cigr 210681 210971 153 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 568905 569339 234 - . . . . . -1 -1 -1 . . . scaffold265 WUBlastX LTR_Ngaro 32674 33090 283 - . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LTR_Ngaro 165160 166035 198 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L1 763270 763743 247 + . . . . . -1 -1 -1 . . . scaffold41572 WUBlastX LINE_RTE-X 11619 11834 21 - . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX DNA_Maverick 36713 37462 198 - . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 171688 171828 34 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; C25792 WUBlastX LTR_Ngaro 3053 3496 257 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Pao 1021239 1021757 46 - . . . . . -1 -1 -1 . . . C33378 WUBlastX LTR_Ngaro 9829 10035 51 - . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LTR_Gypsy 49506 50201 191 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold40476 WUBlastX LTR_Gypsy 27839 28057 29 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy-Cigr 64143 65006 295 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_Gypsy 450000 450521 220 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold911 WUBlastX LTR_Gypsy 95487 95957 44 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 96988 97161 86 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold733 WUBlastX LTR_Gypsy 38891 39604 119 + . . scaffold733 GLEAN mRNA 37672 49158 0.939016 - . ID=CGI_10025863; scaffold186 WUBlastX DNA_Harbinger 24112 24330 67 + . . scaffold186 GLEAN mRNA 23019 24333 0.349537 + . ID=CGI_10012601; scaffold896 WUBlastX LINE_L1-Tx1 398285 398836 231 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1-Tx1 14416 15264 158 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_Penelope 62138 62539 53 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 641867 642052 60 - . . . . . -1 -1 -1 . . . scaffold41628 WUBlastX DNA_TcMar-Pogo 41673 42359 262 - . . scaffold41628 GLEAN mRNA 32984 49364 0.999676 - . ID=CGI_10005328; scaffold38784 WUBlastX LTR_Pao 5186 8731 1879 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_Gypsy 124655 125110 310 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_Gypsy 127545 127808 111 - . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 93475 93876 176 - . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 93851 95452 1378 - . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 95458 96240 319 - . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 96357 96857 388 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 37256 37315 30 + . . . . . -1 -1 -1 . . . scaffold40406 WUBlastX LINE_CR1 27665 28333 247 + . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L2 59476 60093 182 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_CR1 365409 365795 138 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Ngaro 280742 281446 216 - . . scaffold610 GLEAN mRNA 278888 282376 0.9996 + . ID=CGI_10021107; scaffold1221 WUBlastX LINE_RTE-X 38248 39465 201 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_RTE-X 114920 115294 106 + . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX DNA_Maverick 128196 129047 233 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 9557 9727 68 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_L1-Tx1 1010670 1011041 41 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold421 WUBlastX LTR_Gypsy-Cigr 307316 307414 51 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 300590 301975 198 + . . . . . -1 -1 -1 . . . C26550 WUBlastX LTR_Ngaro 1950 2477 145 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_L2 230895 231488 221 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 1453959 1454867 232 - . . scaffold77 GLEAN mRNA 1435771 1455368 0.401661 + . ID=CGI_10028040; scaffold32 WUBlastX LINE_Penelope 208110 208589 254 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LTR_Ngaro 85821 86063 87 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LTR_Ngaro 86087 86473 69 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1 247183 247329 42 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold191 WUBlastX DNA_Kolobok 206071 206409 74 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX DNA_Kolobok 206517 206783 40 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; C33510 WUBlastX LINE_RTE-X 4759 5070 168 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 187811 191017 2348 + . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_DIRS 11838 12053 104 - . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_DIRS 12062 12193 22 - . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_DIRS 12547 12780 93 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 299388 300017 282 - . . . . . -1 -1 -1 . . . scaffold1876 WUBlastX LTR_Gypsy 97382 98335 289 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 377917 378702 280 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold59 WUBlastX LINE_L1-Tx1 79916 80281 137 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_L1-Tx1 80656 80901 54 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_CR1-L2 200346 200900 303 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L2 467388 467513 54 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L2 467503 467979 265 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 597740 598234 251 - . . . . . -1 -1 -1 . . . scaffold1460 WUBlastX LTR_Gypsy 7663 8913 292 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_IS4EU 601041 601454 270 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_IS4EU 19255 19803 297 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok 150576 150815 86 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 151506 151718 68 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold288 WUBlastX LINE_L1 210555 210725 91 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold3 WUBlastX LTR_Ngaro 1315370 1315882 128 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold101 WUBlastX DNA_MuDR 677102 677353 31 + . . scaffold101 GLEAN mRNA 676539 710927 0.888019 - . ID=CGI_10021653; scaffold576 WUBlastX LINE_RTE-X 104411 105151 220 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_RTE-X 251146 251442 114 + . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LTR_DIRS 169400 169471 32 + . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LTR_DIRS 169471 169581 55 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Ngaro 7601 8131 140 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX RC_Helitron 438639 442196 2140 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Gypsy 56797 58854 1634 + . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold252 WUBlastX LINE_L2 251110 251748 281 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 214868 215596 284 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX DNA_Harbinger 672101 672412 129 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672412 672507 54 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672506 672619 73 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold37532 WUBlastX LTR_Gypsy 31830 32144 192 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 32129 33166 94 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold689 WUBlastX LINE_L1 130161 130250 49 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_PiggyBac 353686 354075 200 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 281236 281631 161 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold419 WUBlastX LINE_L1-Tx1 866863 867327 33 - . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L1-Tx1 826913 826954 20 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy 206039 208108 1586 - . . scaffold723 GLEAN mRNA 194118 214562 0.999791 - . ID=CGI_10015263; scaffold1101 WUBlastX LTR_Gypsy 239850 240587 494 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_Gypsy 240587 241240 421 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_Gypsy 241233 242027 860 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_Gypsy 241997 243259 707 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_Gypsy 243262 243666 297 - . . . . . -1 -1 -1 . . . scaffold1086 WUBlastX LINE_L2 250861 251529 272 - . . . . . -1 -1 -1 . . . C25596 WUBlastX LINE_CR1-L2 2704 3159 240 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Gypsy 371012 371521 138 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Ngaro 142565 142687 36 - . . . . . -1 -1 -1 . . . scaffold930 WUBlastX DNA_Merlin 240001 240234 40 + . . scaffold930 GLEAN mRNA 232511 243304 0.84036 - . ID=CGI_10010203; scaffold100 WUBlastX LTR_Ngaro 540551 541018 228 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 541165 541401 85 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX DNA_Maverick 505947 506264 283 + . . . . . -1 -1 -1 . . . C30582 WUBlastX LINE_RTE-BovB 2780 3142 257 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Ngaro 14755 14892 20 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX DNA_TcMar-Tc1 16152 16550 188 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_TcMar-Tc1 221946 222422 133 + . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX DNA_hAT 17204 17395 86 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX DNA_hAT 17548 18111 263 - . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX DNA_Harbinger 64264 64467 33 - . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX DNA_Harbinger 64505 64975 220 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy 342354 342551 169 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 477811 477939 71 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-X 240243 240518 36 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX DNA_Sola 282703 282954 45 + . . scaffold925 GLEAN mRNA 265784 299058 0.996279 - . ID=CGI_10017423; scaffold1475 WUBlastX LINE_L1-Tx1 85731 86243 154 - . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LINE_L1-Tx1 62441 62836 38 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L2 28071 28490 150 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_DIRS 406228 407085 296 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Gypsy 303396 303557 23 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 63900 64070 58 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold1826 WUBlastX LTR_Gypsy 41151 41345 102 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold1066 WUBlastX DNA_Harbinger 90352 90555 72 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Harbinger 91139 91360 80 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Ngaro 644449 644808 212 + . . scaffold102 GLEAN mRNA 643973 666734 0.499984 + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 644778 645155 94 + . . scaffold102 GLEAN mRNA 643973 666734 0.499984 + . ID=CGI_10028445; scaffold41436 WUBlastX LINE_L1-Tx1 51874 52920 152 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1 523424 523972 261 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 197129 197581 114 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_En-Spm 719871 721013 273 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_En-Spm 727944 729086 273 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 202486 202557 35 - . . scaffold1772 GLEAN mRNA 201858 204314 0.999554 - . ID=CGI_10014812; scaffold1054 WUBlastX LTR_Gypsy 111283 111390 27 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_L1-Tx1 455873 456343 85 + . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 350952 351548 190 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L2 208474 209499 225 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 330365 330631 90 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 330974 331252 134 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1-Tx1 571434 571793 206 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX DNA_TcMar-Tc1 330199 330735 193 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LTR_Ngaro 71383 71637 37 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold1324 WUBlastX DNA_TcMar-Tc1 469261 470067 280 - . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX LINE_L2 214733 214885 40 + . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX LINE_L2 214855 215124 115 + . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX LINE_L2 215133 215882 105 + . . . . . -1 -1 -1 . . . C31982 WUBlastX LTR_Ngaro 8885 9055 72 + . . . . . -1 -1 -1 . . . C32108 WUBlastX DNA_En-Spm 14 991 347 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 121781 122512 336 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1 584188 584565 99 + . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_Penelope 131256 131876 94 + . . . . . -1 -1 -1 . . . scaffold32912 WUBlastX LTR_Ngaro 6093 6653 368 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_CR1 454849 455238 90 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1 127011 127190 87 + . . . . . -1 -1 -1 . . . scaffold37080 WUBlastX LINE_CR1-L2 9615 10190 356 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX DNA_hAT-Tip100 110005 110316 144 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT-Tip100 111514 111771 42 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold145 WUBlastX LTR_Gypsy 792219 792665 241 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_Kolobok 374869 375153 132 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 375742 375828 23 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 377317 377553 103 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold788 WUBlastX DNA_Kolobok-IS4 125250 125483 109 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_Penelope 42309 42695 217 + . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 30727 31173 56 - . . . . . -1 -1 -1 . . . scaffold36736 WUBlastX LTR_DIRS 33124 33867 182 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX DNA_Sola 433410 433967 169 - . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX DNA_TcMar-Marin 21726 22022 197 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_L1-Tx1 28713 29648 275 - . . scaffold583 GLEAN mRNA 11252 30786 0.538908 + . ID=CGI_10023603; scaffold482 WUBlastX LINE_L2 233555 233758 140 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX DNA_hAT-Tip100 43015 43761 291 + . . scaffold243 GLEAN mRNA 30219 44504 0.996041 + . ID=CGI_10006813; scaffold619 WUBlastX DNA_hAT-hATw 952227 953405 254 + . . scaffold619 GLEAN mRNA 949722 959476 0.544338 - . ID=CGI_10025794; scaffold1569 WUBlastX LINE_Proto2 16430 18382 258 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 177141 177563 228 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 177687 177905 85 + . . . . . -1 -1 -1 . . . scaffold870 WUBlastX DNA_hAT 48506 48700 57 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold1154 WUBlastX LTR_DIRS 329125 329466 167 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold207 WUBlastX LTR_Gypsy 26902 27519 412 + . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_L1 25372 26298 307 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 25372 26298 307 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold827 WUBlastX LINE_RTE-X 46053 47372 308 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 514993 515058 35 - . . . . . -1 -1 -1 . . . scaffold262 WUBlastX LINE_CR1-L2 23651 23773 65 - . . . . . -1 -1 -1 . . . scaffold262 WUBlastX LINE_CR1-L2 24952 24999 30 - . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX LINE_CR1-L2 459035 459355 161 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_hAT-Tip100 456204 456758 169 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_hAT-Tip100 456721 457737 93 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Ngaro 160063 160827 334 + . . scaffold520 GLEAN mRNA 155699 161242 0.98619 + . ID=CGI_10010955; C35006 WUBlastX DNA_Kolobok-IS4 362 1099 364 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_IS4EU 465135 465968 362 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy 69329 69430 25 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold544 WUBlastX LINE_L1-Tx1 209740 209811 22 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold163 WUBlastX LINE_RTE-X 78115 78729 133 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX DNA_PiggyBac 311542 311691 43 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold352 WUBlastX DNA_PiggyBac 312283 312783 306 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold481 WUBlastX LINE_L1-Tx1 1238864 1239085 121 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L1-Tx1 1239817 1240197 133 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 187639 188532 22 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold36664 WUBlastX LTR_Gypsy 27223 27789 164 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 22967 23077 64 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold40054 WUBlastX LTR_Ngaro 75275 75883 296 + . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX LINE_R2 78165 79274 420 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_RTE-X 19689 20042 58 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 20158 20283 58 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 20356 20673 133 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 20688 21128 111 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold1469 WUBlastX LINE_RTE-X 396258 396914 405 + . . . . . -1 -1 -1 . . . scaffold43616 WUBlastX LINE_RTE-X 205391 206047 405 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold737 WUBlastX LINE_L2 13363 14442 298 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_En-Spm 98536 99261 236 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_En-Spm 99276 99620 176 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1084482 1085570 335 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_L2 390700 391374 126 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold121 WUBlastX LINE_L1 338918 339175 58 - . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L1-Tx1 70710 71816 100 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold1750 WUBlastX DNA_TcMar-Tc1 581865 582851 356 + . . . . . -1 -1 -1 . . . C29954 WUBlastX DNA_TcMar-Tc1 3347 4318 341 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 12 710 363 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_L2 282735 283706 299 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX DNA_Harbinger 211682 211942 122 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 597159 597476 92 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 797543 797695 42 + . . . . . -1 -1 -1 . . . scaffold787 WUBlastX DNA_hAT-Blackja 233852 235051 351 - . . scaffold787 GLEAN mRNA 219328 253031 0.970021 - . ID=CGI_10011650; scaffold122 WUBlastX DNA_Kolobok 254835 254996 79 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX DNA_Kolobok 255083 255343 94 - . . scaffold122 GLEAN mRNA 255059 255627 0.999999 - . ID=CGI_10011880; scaffold122 WUBlastX DNA_Kolobok 255466 255651 114 - . . scaffold122 GLEAN mRNA 255059 255627 0.999999 - . ID=CGI_10011880; scaffold122 WUBlastX DNA_Kolobok 255976 256515 123 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX DNA_Kolobok 254577 254654 27 - . . . . . -1 -1 -1 . . . scaffold41054 WUBlastX DNA_TcMar-Marin 35884 36171 167 - . . scaffold41054 GLEAN mRNA 15508 39181 0.98779 - . ID=CGI_10004673; scaffold42784 WUBlastX LINE_RTE-BovB 65166 66584 327 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 692186 692530 112 - . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX LINE_CR1 40258 40599 256 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold39268 WUBlastX LINE_L2 18960 19391 220 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold1601 WUBlastX LTR_Gypsy 254421 254651 105 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX DNA_Harbinger 210893 211147 196 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_L1-Tx1 54012 54800 124 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 203247 203441 62 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1214 WUBlastX DNA_Crypton 233231 233671 224 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX DNA_Crypton 233853 234359 193 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_TcMar-Marin 116270 116632 86 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_Proto2 468414 471029 276 + . . scaffold541 GLEAN mRNA 466590 480582 0.782383 + . ID=CGI_10022394; scaffold211 WUBlastX LINE_RTE-X 643434 643679 58 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Sola 951081 951575 194 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX RC_Helitron 106868 107764 193 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX RC_Helitron 107761 108039 133 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX RC_Helitron 108132 108464 118 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 193966 196128 437 + . . . . . -1 -1 -1 . . . scaffold707 WUBlastX LTR_Gypsy 2365 2487 25 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_TcMar-Marin 19341 19898 251 + . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX LINE_RTE-BovB 10193 10420 133 + . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX LINE_RTE-BovB 10397 10600 135 + . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX LINE_RTE-BovB 10644 10847 123 + . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX LINE_RTE-BovB 10845 11162 120 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_CR1 129671 130255 257 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold1154 WUBlastX LTR_Gypsy-Cigr 377234 377374 112 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy-Cigr 377398 377727 126 + . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1-Tx1 165235 166548 276 - . . . . . -1 -1 -1 . . . scaffold35712 WUBlastX LINE_RTE-X 5642 6160 99 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold433 WUBlastX LTR_Gypsy-Cigr 1204625 1204816 155 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_L2 437134 438576 387 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_CR1 773283 774071 472 + . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LTR_DIRS 18031 18309 118 - . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 26710 26916 64 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 88605 89120 283 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_Penelope 220653 221216 218 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 933967 935067 328 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 420221 420949 207 + . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold1345 WUBlastX LTR_Gypsy 240230 240706 179 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1811 WUBlastX DNA_Kolobok-IS4 66420 67295 445 - . . scaffold1811 GLEAN mRNA 66417 67040 1 - . ID=CGI_10004796; scaffold40952 WUBlastX DNA_Merlin 101575 102447 405 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_L1-Tx1 500404 500520 27 + . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_L1-Tx1 242578 243588 344 + . . . . . -1 -1 -1 . . . scaffold38898 WUBlastX LTR_Ngaro 3286 3558 156 - . . . . . -1 -1 -1 . . . scaffold39274 WUBlastX LINE_CR1 29443 29742 96 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_L1-Tx1 43032 44486 317 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1 112934 113080 75 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1 113083 113973 352 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-BovB 1165054 1165701 182 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-BovB 1165937 1166329 288 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_RTE-X 144561 144797 23 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX DNA_Sola 116264 116611 131 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LTR_DIRS 61489 61788 153 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_CR1 408228 408410 26 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 90081 90206 42 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 571902 571946 20 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1 136938 137159 79 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-X 10424 10573 80 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-X 10581 11816 61 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 83543 83725 61 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LTR_DIRS 47579 48385 443 + . . scaffold5 GLEAN mRNA 43954 49424 0.676364 + . ID=CGI_10012924; scaffold5 WUBlastX LTR_DIRS 47579 48385 443 + . . scaffold5 GLEAN mRNA 46548 64040 0.730165 - . ID=CGI_10012925; scaffold1149 WUBlastX DNA_TcMar-Tc1 679045 679587 355 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX LTR_Gypsy 971 2038 67 - . . . . . -1 -1 -1 . . . scaffold382 WUBlastX DNA_IS4EU 41809 42723 440 + . . scaffold382 GLEAN mRNA 40511 73048 0.0752347 + . ID=CGI_10004503; scaffold377 WUBlastX LINE_RTE-X 61708 63273 363 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_RTE-X 63934 64248 46 - . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_DIRS 114453 114569 31 + . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_DIRS 114617 114874 162 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_CR1 55833 56537 146 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy 565693 565866 40 - . . . . . -1 -1 -1 . . . scaffold139 WUBlastX RC_Helitron 20279 21142 270 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 148239 148907 85 + . . . . . -1 -1 -1 . . . C33658 WUBlastX LINE_L1-Tx1 5596 5985 285 + . . . . . -1 -1 -1 . . . C33658 WUBlastX LINE_L1-Tx1 6019 6606 98 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-BovB 1164896 1165153 144 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-BovB 1165269 1166081 319 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_CR1 140582 140911 42 - . . . . . -1 -1 -1 . . . C28626 WUBlastX LINE_RTE-X 1922 2680 132 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_TcMar-Tc1 729516 729683 93 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_TcMar-Tc1 729692 730513 264 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_L1-Tx1 84603 84791 54 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold502 WUBlastX LTR_Gypsy 179422 179610 26 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_CR1-L2 275412 275654 200 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_CR1-L2 275639 276253 188 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_hAT 107061 107180 48 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 105478 105606 52 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 105997 106095 43 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold1217 WUBlastX LTR_Ngaro 50147 51241 476 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_hAT-Blackja 1008798 1010105 425 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 275555 275773 94 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 798312 798761 265 + . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX LINE_L1-Tx1 116553 117080 107 - . . . . . -1 -1 -1 . . . scaffold941 WUBlastX DNA_TcMar-Tc1 33538 34053 275 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Pao 173318 174499 37 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold698 WUBlastX LINE_CR1 299467 299922 94 + . . . . . -1 -1 -1 . . . scaffold37468 WUBlastX LTR_Gypsy 31588 31632 26 + . . . . . -1 -1 -1 . . . scaffold40140 WUBlastX LTR_Gypsy 39033 39530 50 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LINE_L1-Tx1 532538 532816 71 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LINE_L1-Tx1 532813 533730 172 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-BovB 16848 17045 123 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 643013 643132 35 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_PiggyBac 611723 612025 168 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_Penelope 1134889 1135545 361 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LTR_Ngaro 197998 198885 490 + . . scaffold1729 GLEAN mRNA 196724 202355 0.822484 + . ID=CGI_10008492; scaffold1179 WUBlastX LINE_RTE-X 422239 423336 431 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_Academ 183943 184917 397 - . . scaffold954 GLEAN mRNA 183919 184182 0.57353 - . ID=CGI_10010744; scaffold954 WUBlastX DNA_Academ 185588 186214 143 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L1 248246 249805 232 + . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L1-Tx1 4952 5692 304 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold1826 WUBlastX LINE_L1-Tx1 7805 9037 216 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 436607 437278 398 + . . . . . -1 -1 -1 . . . scaffold38274 WUBlastX LINE_RTE-X 10963 11748 122 - . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX LINE_RTE-X 85301 85873 74 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-X 86966 87373 21 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold1896 WUBlastX LINE_L1-Tx1 162712 163428 408 - . . . . . -1 -1 -1 . . . scaffold39158 WUBlastX LTR_Gypsy-Troyk 60727 60942 37 - . . . . . -1 -1 -1 . . . scaffold39158 WUBlastX LTR_Gypsy-Troyk 60948 62087 525 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2 423870 423980 21 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_DIRS 860164 860262 67 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Ngaro 459613 460026 37 + . . . . . -1 -1 -1 . . . scaffold366 WUBlastX DNA_Harbinger 107351 107827 419 + . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold43066 WUBlastX DNA_Harbinger 96958 97398 294 - . . . . . -1 -1 -1 . . . scaffold43066 WUBlastX DNA_Harbinger 97400 97963 219 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_Maverick 325913 326254 213 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold1084 WUBlastX LTR_DIRS 173927 174190 73 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 174759 174977 60 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 174829 176247 325 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 176231 176422 47 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1382 WUBlastX LINE_L1-Tx1 54168 54779 277 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 61060 61464 65 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 801819 802931 208 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_RTE-BovB 12077 13156 369 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_RTE-BovB 13146 14063 156 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy-Cigr 498807 499124 172 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_TcMar-Tc1 278656 278961 187 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_TcMar-Tc1 278994 279644 268 - . . . . . -1 -1 -1 . . . scaffold1534 WUBlastX LTR_Copia 13877 14692 417 + . . . . . -1 -1 -1 . . . scaffold1534 WUBlastX LTR_Copia 14692 15489 231 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_CR1-L2 145020 145262 93 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_DIRS 299546 300592 554 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold41296 WUBlastX LTR_DIRS 111091 112137 554 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 239384 239590 181 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 239584 240198 526 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 27635 28168 125 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LTR_Gypsy 32790 33221 136 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_hAT-hATw 551873 553114 331 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_hAT-hATw 254995 255969 319 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LTR_DIRS 96214 98160 389 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LTR_DIRS 98291 98440 50 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_L1-Tx1 15910 16491 66 - . . . . . -1 -1 -1 . . . scaffold43290 WUBlastX LINE_L2 208678 209751 512 + . . scaffold43290 GLEAN mRNA 208134 214602 0.737369 + . ID=CGI_10009648; scaffold1343 WUBlastX LTR_Gypsy 39878 39952 20 + . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LINE_R2-Hero 329550 329630 40 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_RTE-X 284925 285350 176 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_RTE-X 286695 287051 178 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_L2 81086 81571 76 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_L2 82866 84092 266 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy-Cigr 19866 20381 351 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 642367 642507 21 + . . . . . -1 -1 -1 . . . scaffold35138 WUBlastX LTR_Gypsy 5983 6123 21 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Gypsy 237093 237233 21 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Gypsy 237903 238043 21 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LTR_Gypsy 295419 295559 21 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LINE_L1-Tx1 26308 27849 369 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold501 WUBlastX LTR_DIRS 633437 633628 137 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1-Tx1 1228310 1228423 36 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1-Tx1 1228422 1228547 47 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1-Tx1 1228652 1229194 286 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1-Tx1 1229185 1229382 72 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1-Tx1 1230205 1230594 41 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_L1-Tx1 225512 226408 198 - . . . . . -1 -1 -1 . . . scaffold75 WUBlastX LTR_Gypsy 134793 135863 659 + . . . . . -1 -1 -1 . . . C34856 WUBlastX LTR_Gypsy 7920 8885 469 - . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 8860 9027 207 - . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold4 WUBlastX LINE_L1 476461 476544 42 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold1589 WUBlastX DNA_Maverick 156450 157658 633 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_CR1-L2 293913 294269 97 - . . . . . -1 -1 -1 . . . scaffold38952 WUBlastX LINE_RTE-X 61056 62987 483 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 36812 37678 312 - . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy 51867 52532 568 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_hAT-hATw 656125 657138 78 + . . scaffold77 GLEAN mRNA 654725 664026 0.999581 + . ID=CGI_10027987; scaffold1469 WUBlastX DNA_Kolobok-IS4 42654 43781 551 - . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX DNA_Kolobok-IS4 44506 44766 50 - . . . . . -1 -1 -1 . . . C17024 WUBlastX DNA_IS 1 441 696 - . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 46757 47026 98 + . . . . . -1 -1 -1 . . . C29584 WUBlastX LINE_Penelope 5104 6642 549 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-BovB 39707 40006 163 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 40089 40307 97 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 40305 40769 285 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 40822 41097 104 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold41206 WUBlastX DNA_Zator 64003 64239 32 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1 187315 188343 365 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold43280 WUBlastX LTR_Gypsy 170155 170316 39 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold376 WUBlastX LTR_DIRS 421452 421856 146 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_DIRS 422456 422857 202 + . . . . . -1 -1 -1 . . . scaffold35870 WUBlastX LINE_L1-Tx1 13753 13974 105 - . . . . . -1 -1 -1 . . . scaffold35870 WUBlastX LINE_L1-Tx1 13961 14587 400 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LINE_CR1 438136 439014 708 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LTR_Ngaro 92550 93251 459 + . . scaffold509 GLEAN mRNA 91758 98346 0.858612 - . ID=CGI_10018642; scaffold509 WUBlastX LTR_Ngaro 93259 93630 215 + . . scaffold509 GLEAN mRNA 91758 98346 0.858612 - . ID=CGI_10018642; scaffold1061 WUBlastX DNA_Maverick 123464 124771 673 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 85741 85944 53 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold40438 WUBlastX LINE_L1-Tx1 10939 11406 34 - . . . . . -1 -1 -1 . . . scaffold34438 WUBlastX RC_Helitron 12824 13318 154 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Gypsy 369764 369931 59 - . . . . . -1 -1 -1 . . . scaffold41660 WUBlastX LINE_L1-Tx1 122884 124476 466 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_CR1-L2 191319 191426 22 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy 124761 125201 156 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 482071 483375 763 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 1042826 1042972 36 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold1449 WUBlastX LINE_RTE-X 65171 65992 414 + . . . . . -1 -1 -1 . . . C28510 WUBlastX DNA_Sola 2922 3164 159 - . . . . . -1 -1 -1 . . . C28510 WUBlastX DNA_Sola 4718 5104 20 - . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LTR_Gypsy 12915 13622 43 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Gypsy 415948 416670 160 + . . . . . -1 -1 -1 . . . scaffold38116 WUBlastX LTR_Gypsy 15573 15872 201 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 417184 418095 232 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 418071 418373 144 - . . . . . -1 -1 -1 . . . scaffold223 WUBlastX DNA_TcMar-Fot1 152342 154123 692 + . . . . . -1 -1 -1 . . . C24566 WUBlastX LINE_RTE-X 1202 2584 629 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_TcMar-Pogo 188189 189634 729 + . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX LINE_L1-Tx1 42742 44460 429 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; scaffold433 WUBlastX LINE_CR1-L2 1234476 1234568 22 + . . . . . -1 -1 -1 . . . scaffold674 WUBlastX LTR_Ngaro 12937 14466 678 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold1360 WUBlastX LINE_L1-Tx1 499355 499399 20 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_L1-Tx1 499402 499581 77 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_L1-Tx1 501682 503127 385 + . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LINE_L1-Tx1 7260 7787 239 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 1041837 1042193 33 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold1189 WUBlastX LINE_L1-Tx1 633958 634836 129 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1-Tx1 634946 635554 344 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1-Tx1 636354 636728 64 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold1382 WUBlastX LINE_L1-Tx1 52893 53189 139 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 524447 524554 45 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 91571 92494 400 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Pao 144619 145020 383 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 153082 154782 743 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Sola 948121 948420 162 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Sola 949988 950176 138 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 383148 383279 117 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 383968 384651 569 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX RC_Helitron 774144 775808 842 - . . . . . -1 -1 -1 . . . C25050 WUBlastX DNA_hAT-Tip100 2381 3055 290 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy-Cigr 4711 4995 62 - . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LTR_Gypsy 351365 351775 248 - . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LTR_Gypsy 351775 352413 502 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 621539 622150 345 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold1301 WUBlastX LTR_Pao 1040240 1040962 332 - . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LINE_L2 3859 4245 208 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1673330 1673974 427 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 229746 230186 74 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy-Cigr 130599 131426 457 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy-Cigr 133231 133440 59 - . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LINE_RTE-X 107634 109007 775 + . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LTR_Gypsy 139049 140194 345 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy-Cigr 328679 329020 106 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy-Cigr 330378 330605 160 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 11092 11373 150 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 12380 12730 344 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold1188 WUBlastX DNA_Sola 349434 349982 186 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_Sola 349975 350778 383 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_Sola 350777 351430 292 + . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LTR_Ngaro 172638 172910 63 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 176393 176665 63 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold1322 WUBlastX LINE_RTE-X 366937 368628 612 - . . scaffold1322 GLEAN mRNA 366517 374727 0.833191 + . ID=CGI_10019476; scaffold617 WUBlastX DNA_Academ 120074 121189 429 + . . . . . -1 -1 -1 . . . scaffold617 WUBlastX DNA_Academ 121215 122126 482 + . . scaffold617 GLEAN mRNA 121899 122204 0.866433 + . ID=CGI_10012724; scaffold847 WUBlastX DNA_hAT-Tip100 714869 715012 58 + . . . . . -1 -1 -1 . . . scaffold1566 WUBlastX LTR_Pao 7543 7959 56 - . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX LTR_Copia 120764 120880 39 - . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_Copia 26801 27004 31 + . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX LTR_Gypsy-Cigr 51045 51398 73 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-BovB 905907 906014 29 - . . . . . -1 -1 -1 . . . scaffold40526 WUBlastX LTR_Gypsy 58299 58484 31 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_Gypsy-Cigr 477577 478131 53 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 263959 264042 37 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LINE_CR1 139356 139853 44 + . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_CR1 29889 30005 36 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_CR1-L2 181502 181651 84 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LINE_CR1 66656 66712 26 - . . . . . -1 -1 -1 . . . scaffold1577 WUBlastX LINE_CR1 35756 35812 26 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_CR1 95104 95160 26 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_CR1-L2 14307 14504 64 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_CR1-L2 668426 668623 71 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L2 1086184 1086837 35 - . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX LINE_CR1 9975 10661 54 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_CR1 1197032 1197286 57 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_CR1 515657 516133 24 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_CR1 856124 856279 34 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 9389 9526 28 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 180139 180297 48 - . . . . . -1 -1 -1 . . . scaffold1840 WUBlastX DNA_En-Spm 58277 58498 58 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_L2 145576 145659 22 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LTR_Ngaro 429623 429841 26 + . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold192 WUBlastX LTR_Ngaro 31232 31339 64 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_En-Spm 81310 81402 34 - . . . . . -1 -1 -1 . . . C20298 WUBlastX DNA_Harbinger 293 430 35 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy 605886 606179 73 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 318742 318852 90 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX RC_Helitron 38527 38808 77 - . . scaffold626 GLEAN mRNA 35526 64232 0.361303 - . ID=CGI_10019977; scaffold1767 WUBlastX LINE_R2-Hero 390291 390446 45 - . . . . . -1 -1 -1 . . . scaffold1767 WUBlastX LINE_R2-Hero 390487 390858 47 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_IS4EU 63504 63599 39 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_IS4EU 63825 63905 40 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_Kolobok-IS4 62535 63089 64 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_Jockey 134348 134488 24 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX LINE_L2 129777 130049 57 + . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L1 93715 93813 26 - . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX DNA_MuDR 190784 191104 45 + . . scaffold1834 GLEAN mRNA 187623 216470 0.374762 + . ID=CGI_10016658; scaffold809 WUBlastX LINE_Penelope 82678 82812 54 + . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LINE_Penelope 36331 36600 79 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_P 495956 496123 20 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1 161929 161991 20 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_L1 272037 272219 72 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_Penelope 300207 300377 67 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_Penelope 192402 192548 47 - . . . . . -1 -1 -1 . . . C27588 WUBlastX LINE_Penelope 194 355 51 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_RTE-BovB 337559 337693 51 - . . scaffold1673 GLEAN mRNA 332227 347638 0.811348 + . ID=CGI_10013581; scaffold421 WUBlastX LINE_RTE-X 247413 247571 81 - . . scaffold421 GLEAN mRNA 232502 254015 0.999281 - . ID=CGI_10012158; scaffold775 WUBlastX LINE_RTE-X 54527 54682 49 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_RTE-X 380224 380361 86 + . . scaffold925 GLEAN mRNA 368361 388516 0.521242 + . ID=CGI_10017426; scaffold472 WUBlastX LINE_RTE-X 366885 367151 29 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LINE_RTE-X 206966 207193 25 + . . scaffold1682 GLEAN mRNA 191866 233299 0.316426 - . ID=CGI_10016049; scaffold1527 WUBlastX LINE_RTE-BovB 19547 19609 21 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-BovB 11268 11486 82 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-X 133007 133279 27 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX LINE_RTE-BovB 9098 9133 20 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX LINE_RTE-BovB 9382 9417 20 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold1845 WUBlastX DNA_Maverick 304061 304699 44 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_RTE-X 57794 58270 39 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 35586 35777 84 + . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX LTR_Copia 61432 62139 64 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LTR_Gypsy 88502 88747 91 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LINE_RTE-X 233893 234198 23 - . . scaffold1743 GLEAN mRNA 225368 248286 0.742801 - . ID=CGI_10011658; scaffold873 WUBlastX DNA_Harbinger 221239 221490 62 - . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX DNA_TcMar-Tc1 145844 146092 73 - . . . . . -1 -1 -1 . . . C32318 WUBlastX LINE_L2 7512 7823 71 - . . C32318 GLEAN mRNA 2480 10983 0.999998 + . ID=CGI_10000883; scaffold1101 WUBlastX LINE_L2 725079 725609 89 - . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LINE_CR1-L2 398640 398783 52 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LINE_CR1-L2 398800 398955 21 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 366788 367216 26 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_DIRS 366788 367216 26 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold80 WUBlastX LTR_Gypsy 10771 10839 32 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy 285834 286124 31 - . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX LTR_Gypsy 34600 35211 44 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 45041 45274 48 + . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LTR_Gypsy 364665 364958 69 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy-Cigr 33477 33701 62 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_Kolobok-IS4 600648 601202 96 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX DNA_IS4EU 45207 45335 29 - . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold1621 WUBlastX DNA_IS4EU 3932 4681 61 - . . . . . -1 -1 -1 . . . scaffold40526 WUBlastX DNA_IS4EU 77979 78110 83 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX RC_Helitron 271999 272205 88 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold1588 WUBlastX RC_Helitron 313804 314193 77 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LTR_Gypsy 318745 318960 101 - . . scaffold705 GLEAN mRNA 315628 318785 0.810949 - . ID=CGI_10015515; scaffold546 WUBlastX LTR_Gypsy 251741 252571 57 - . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX DNA_Harbinger 92765 92896 72 - . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX DNA_Harbinger 66957 67166 69 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_L1 106191 106679 49 + . . scaffold541 GLEAN mRNA 106056 107192 0.777728 + . ID=CGI_10022378; scaffold586 WUBlastX LINE_L1 2658 3146 49 + . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LINE_L1 6469 7098 67 + . . . . . -1 -1 -1 . . . scaffold1506 WUBlastX LINE_L1 49503 49793 54 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX DNA_TcMar-Marin 7220 7501 50 + . . . . . -1 -1 -1 . . . scaffold718 WUBlastX DNA_TcMar-Marin 200063 200299 80 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_TcMar-Marin 773275 773640 101 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX DNA_TcMar-Marin 631259 631501 85 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX DNA_TcMar-Marin 58633 58872 82 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Maverick 122656 122967 67 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 208457 208549 27 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 81521 81802 72 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LINE_RTE-X 12224 12568 55 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 678268 678543 66 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-X 896564 896812 56 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_RTE-X 406850 407188 80 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold820 WUBlastX LTR_Copia 11859 11990 25 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_RTE-X 49185 49334 96 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_Sola 38000 38275 20 - . . scaffold43182 GLEAN mRNA 25821 44165 0.795977 + . ID=CGI_10009197; scaffold1599 WUBlastX DNA_Sola 208848 208913 21 + . . scaffold1599 GLEAN mRNA 204689 219809 0.999676 - . ID=CGI_10027141; scaffold1322 WUBlastX DNA_TcMar-Tc1 359086 359511 35 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX DNA_TcMar-Tc1 349284 349622 53 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 351162 351500 53 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold226 WUBlastX DNA_TcMar-Tc2 87020 87418 52 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX DNA_TcMar-Tc2 87418 87510 48 + . . . . . -1 -1 -1 . . . scaffold1419 WUBlastX LTR_Gypsy 12139 12216 37 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1-L2 585402 585677 65 - . . . . . -1 -1 -1 . . . scaffold1675 WUBlastX LINE_CR1-L2 15639 15950 60 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 298773 299309 66 + . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_CR1 92824 93072 56 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Gypsy 14290 14535 82 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 311033 311686 65 + . . scaffold1016 GLEAN mRNA 310747 311100 0.968712 + . ID=CGI_10016895; scaffold304 WUBlastX LTR_Gypsy 81474 81701 49 + . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_L2 399880 400272 100 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 706689 707120 41 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_L2 306128 306277 59 + . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX DNA_Harbinger 39866 40276 66 - . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LTR_Gypsy 70167 70214 22 - . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LTR_Gypsy 101063 101635 34 - . . . . . -1 -1 -1 . . . scaffold33026 WUBlastX DNA_hAT-Tip100 4174 4236 26 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_IS4EU 50334 50486 98 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_IS4EU 789612 789806 77 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_IS4EU 16352 16495 51 + . . . . . -1 -1 -1 . . . scaffold874 WUBlastX LINE_Jockey 4529 4591 22 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX DNA_Kolobok 40660 40935 101 + . . scaffold315 GLEAN mRNA 38585 42231 0.984467 + . ID=CGI_10020399; scaffold38354 WUBlastX LTR_Gypsy 3899 4216 80 + . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_P 111648 111992 81 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_MuDR 1477852 1478340 63 + . . . . . -1 -1 -1 . . . scaffold38466 WUBlastX DNA_Kolobok-Hyd 3620 3688 23 + . . scaffold38466 GLEAN mRNA 3170 4605 0.999675 + . ID=CGI_10002797; scaffold695 WUBlastX LINE_L1 90259 90453 26 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold150 WUBlastX LINE_L1-Tx1 187804 187941 32 + . . . . . -1 -1 -1 . . . scaffold32618 WUBlastX LINE_RTE-X 1147 1347 64 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX DNA_Sola 387394 387996 30 - . . scaffold1671 GLEAN mRNA 384061 387810 0.999617 - . ID=CGI_10015157; scaffold1423 WUBlastX LINE_RTE-X 229555 229911 42 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-X 225480 225695 75 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 134306 134446 95 + . . scaffold313 GLEAN mRNA 134319 135998 0.83601 - . ID=CGI_10026584; scaffold41806 WUBlastX LINE_RTE-X 63770 64066 66 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_RTE-X 248986 249192 84 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 180082 180231 58 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 180309 180395 23 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1-Tx1 939636 939992 80 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold36642 WUBlastX DNA_TcMar-Tc1 30346 30648 76 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_CR1-L2 1125328 1125471 31 - . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LINE_CR1-L2 2513 2713 33 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LINE_L2 45161 45541 89 - . . scaffold488 GLEAN mRNA 23091 53480 0.998314 - . ID=CGI_10005407; scaffold43686 WUBlastX LTR_Gypsy-Cigr 131524 131595 32 + . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX LTR_Pao 135160 135414 102 - . . . . . -1 -1 -1 . . . scaffold40150 WUBlastX LINE_CR1 72934 73125 49 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 902164 902616 44 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_L2 14260 14979 48 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L2 878241 878720 75 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX DNA_Crypton 323961 324164 74 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LTR_DIRS 369586 369714 34 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_DIRS 1017481 1017660 62 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold604 WUBlastX LTR_Ngaro 124651 124968 55 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX DNA_En-Spm 4389 5024 58 + . . scaffold57 GLEAN mRNA 3208 18413 0.810616 + . ID=CGI_10020530; scaffold453 WUBlastX LTR_Gypsy 142785 142883 34 + . . scaffold453 GLEAN mRNA 138101 157244 0.160604 + . ID=CGI_10015041; scaffold290 WUBlastX DNA_TcMar-Marin 445364 445435 58 + . . . . . -1 -1 -1 . . . scaffold382 WUBlastX DNA_IS4EU 5302 5718 76 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 228171 228659 51 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_Harbinger 512142 512915 37 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX DNA_Harbinger 376305 376724 87 - . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LINE_L1 136090 136341 108 - . . . . . -1 -1 -1 . . . scaffold35238 WUBlastX LINE_L1-Tx1 1702 1776 21 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 1228074 1228478 44 + . . . . . -1 -1 -1 . . . scaffold1781 WUBlastX LINE_L1 105138 105662 74 + . . . . . -1 -1 -1 . . . scaffold37378 WUBlastX DNA_MuDR 28309 28719 96 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_NOF? 155121 155381 43 + . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LINE_Penelope 39974 40150 20 - . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LINE_Penelope 40206 40616 54 - . . . . . -1 -1 -1 . . . scaffold421 WUBlastX DNA_TcMar-Marin 150631 151095 46 - . . . . . -1 -1 -1 . . . scaffold1876 WUBlastX LINE_CR1 108589 108633 21 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_RTE-X 174445 174771 52 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold63 WUBlastX LINE_L1 234564 234899 28 - . . scaffold63 GLEAN mRNA 226088 238680 0.843686 + . ID=CGI_10017275; scaffold1458 WUBlastX LTR_Ngaro 1731 1973 74 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 59257 59520 81 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_RTE-X 376997 377365 24 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_RTE-X 286310 286645 79 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX LINE_RTE-X 66426 66605 104 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LINE_RTE-X 223948 224364 34 + . . scaffold522 GLEAN mRNA 220239 233086 0.999661 + . ID=CGI_10020320; scaffold38984 WUBlastX LINE_RTE-BovB 15666 16040 95 + . . scaffold38984 GLEAN mRNA 8531 16087 0.937171 - . ID=CGI_10003105; scaffold574 WUBlastX LINE_RTE-X 74292 74438 89 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 626554 626769 96 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LINE_RTE-X 20229 20642 45 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold1535 WUBlastX DNA_Maverick 102778 103146 107 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-BovB 482720 482818 20 - . . scaffold593 GLEAN mRNA 482551 496845 0.997605 + . ID=CGI_10022532; scaffold593 WUBlastX LINE_RTE-BovB 483465 483647 93 - . . scaffold593 GLEAN mRNA 482551 496845 0.997605 + . ID=CGI_10022532; scaffold43954 WUBlastX LINE_RTE-X 248466 248729 61 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_RTE-X 74172 74438 75 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LINE_RTE-X 101369 101746 53 - . . scaffold1556 GLEAN mRNA 98989 101989 0.999916 - . ID=CGI_10010473; scaffold120 WUBlastX LTR_DIRS 468609 468851 48 + . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LTR_DIRS 469068 469205 31 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_RTE-X 252513 252740 93 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_Sola 198021 198803 37 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 434221 434580 48 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1-Tx1 611418 611885 23 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LINE_Rex-Babar 15551 15625 26 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_TcMar-Tc1 23306 23578 80 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Pao 204479 204673 30 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_CR1 355807 355881 21 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L2 89031 89228 37 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy 76242 76271 20 - . . . . . -1 -1 -1 . . . scaffold38672 WUBlastX LTR_Gypsy 106 825 69 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Ngaro 587512 587613 41 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold40822 WUBlastX LTR_DIRS 69068 69271 85 + . . . . . -1 -1 -1 . . . scaffold38498 WUBlastX LTR_Ngaro 35987 36169 51 - . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LTR_Ngaro 324589 324990 69 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LTR_Ngaro 325028 325078 30 + . . . . . -1 -1 -1 . . . scaffold40068 WUBlastX DNA_TcMar-Tc1 49583 49744 29 - . . scaffold40068 GLEAN mRNA 33497 57280 0.493966 - . ID=CGI_10003835; scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 49908 85 - . . scaffold40068 GLEAN mRNA 33497 57280 0.493966 - . ID=CGI_10003835; scaffold102 WUBlastX LINE_L2 1441632 1442261 43 - . . . . . -1 -1 -1 . . . scaffold41400 WUBlastX LINE_L2 9967 10050 30 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 99561 99596 22 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LTR_Gypsy 361141 361317 131 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 132670 133158 92 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_Jockey 102072 102386 49 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX RC_Helitron 1203189 1203569 85 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_Kolobok-IS4 47897 48241 33 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Kolobok 402321 402512 104 - . . . . . -1 -1 -1 . . . scaffold38990 WUBlastX LINE_L2 63017 63430 71 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Ngaro 306271 306684 70 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold86 WUBlastX LINE_L1 217098 217394 35 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold142 WUBlastX DNA_MuDR 1243595 1243918 103 + . . scaffold142 GLEAN mRNA 1238618 1243867 0.889602 + . ID=CGI_10026798; scaffold142 WUBlastX DNA_MuDR 1243595 1243918 103 + . . scaffold142 GLEAN mRNA 1243870 1244404 0.974028 + . ID=CGI_10026799; scaffold1227 WUBlastX DNA_Kolobok-Hyd 210250 210369 40 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold1179 WUBlastX LINE_L1 421816 421923 21 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 42853 43305 118 - . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_Penelope 125455 125757 64 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_PiggyBac 516407 516655 65 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_RTE-X 77406 77693 88 + . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_RTE-X 55825 56160 58 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-BovB 207 731 78 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 102228 103112 61 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 233889 234134 70 - . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX DNA_Maverick 37223 37468 70 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_Sola 86500 86643 39 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_Sola 86705 86788 55 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_Sola 86829 87053 34 + . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_Sola 4520 4834 111 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_TcMar-Marin 209326 209430 21 + . . scaffold72 GLEAN mRNA 207105 213716 0.998726 - . ID=CGI_10017841; scaffold816 WUBlastX LINE_L1-Tx1 168941 169330 40 + . . . . . -1 -1 -1 . . . scaffold941 WUBlastX LINE_L1-Tx1 24243 24536 42 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_L2 209370 209546 39 + . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_CR1-L2 81480 81809 84 + . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX LINE_CR1-L2 15557 15760 32 + . . scaffold1376 GLEAN mRNA 13081 17616 0.523289 - . ID=CGI_10002794; scaffold1794 WUBlastX LINE_CR1-L2 318588 318677 28 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_L2 205039 205401 52 + . . . . . -1 -1 -1 . . . scaffold1121 WUBlastX LINE_CR1 22643 22759 24 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L2 908574 908816 54 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_Jockey 938793 939401 97 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-RTE 94570 95118 102 - . . . . . -1 -1 -1 . . . C30768 WUBlastX LTR_Pao 1 183 144 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_CR1-L2 708364 708639 59 + . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LINE_L2 161555 161920 54 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold1538 WUBlastX LINE_L2 25203 25445 34 - . . . . . -1 -1 -1 . . . scaffold1538 WUBlastX LINE_L2 25430 25843 52 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 227999 228346 87 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Ngaro 140476 141333 35 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Ngaro 1299561 1300295 78 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy-Cigr 273052 273771 68 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy-Cigr 101799 102596 62 + . . scaffold759 GLEAN mRNA 101001 103047 0.957564 + . ID=CGI_10010775; scaffold419 WUBlastX LTR_Gypsy 497310 497810 73 - . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_Kolobok 78665 78874 87 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Harbinger 1338050 1338271 93 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_IS4EU 66512 66685 23 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold100 WUBlastX DNA_Kolobok-IS4 597662 598063 93 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_IS4EU 815715 815915 91 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold534 WUBlastX LTR_Gypsy 67906 68277 68 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold35438 WUBlastX DNA_Harbinger 23449 23526 27 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1 263360 264418 35 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1 199447 199932 31 + . . . . . -1 -1 -1 . . . scaffold35466 WUBlastX LINE_L1-Tx1 6 239 85 - . . . . . -1 -1 -1 . . . scaffold78 WUBlastX DNA_Merlin 45724 46092 108 + . . . . . -1 -1 -1 . . . scaffold718 WUBlastX DNA_TcMar-Marin 200072 200254 112 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 81423 81566 105 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_RTE-X 609834 609953 59 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LINE_RTE-X 155957 156292 48 - . . scaffold339 GLEAN mRNA 146286 166002 0.999828 + . ID=CGI_10008803; scaffold658 WUBlastX LINE_RTE-X 151852 152067 92 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 971349 971549 27 - . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold35860 WUBlastX LINE_RTE-X 20399 20680 38 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-X 47281 47496 26 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold4 WUBlastX LINE_L1-Tx1 667205 667276 20 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_L1-Tx1 482073 482420 49 + . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LINE_L1-Tx1 290944 291405 64 + . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LTR_Gypsy-Cigr 72332 72691 62 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_CR1 488807 489436 120 + . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LTR_Gypsy 52301 52897 125 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Gypsy-Cigr 104583 104834 43 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LTR_Gypsy 121120 121587 109 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Gypsy 26572 26865 153 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 308751 308921 20 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold12 WUBlastX LTR_Gypsy 309316 309420 33 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold1188 WUBlastX LTR_Gypsy 645935 646030 30 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LTR_DIRS 320633 320692 26 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold1608 WUBlastX DNA_Crypton 96356 96838 57 + . . . . . -1 -1 -1 . . . C22996 WUBlastX LTR_Gypsy 721 1740 69 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LTR_Gypsy 143136 143192 22 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_IS4EU 138787 139254 64 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX RC_Helitron 22689 22844 38 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX RC_Helitron 185140 185583 112 + . . . . . -1 -1 -1 . . . scaffold770 WUBlastX RC_Helitron 107986 108051 34 + . . . . . -1 -1 -1 . . . scaffold770 WUBlastX RC_Helitron 108027 108332 69 + . . . . . -1 -1 -1 . . . scaffold35198 WUBlastX DNA_TcMar-Marin 20044 20574 111 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 196692 196985 120 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 285520 285609 54 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 285675 285848 91 + . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX DNA_Kolobok 135333 135521 45 + . . scaffold1172 GLEAN mRNA 130831 145007 0.99998 + . ID=CGI_10006909; scaffold1631 WUBlastX LINE_L1 10473 10688 61 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_L1-Tx1 39425 39481 24 + . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LINE_L1-Tx1 87917 88357 51 - . . . . . -1 -1 -1 . . . scaffold1173 WUBlastX LINE_Penelope 100093 100200 56 + . . scaffold1173 GLEAN mRNA 87229 104633 0.605033 - . ID=CGI_10005747; scaffold41082 WUBlastX LINE_RTE-X 56577 56906 37 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX LINE_RTE-X 41171 41359 53 + . . . . . -1 -1 -1 . . . scaffold914 WUBlastX LINE_RTE-X 233033 233425 87 - . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_RTE-X 70949 71257 89 - . . scaffold43054 GLEAN mRNA 69561 76829 0.990615 + . ID=CGI_10008597; scaffold601 WUBlastX LINE_RTE-X 194889 195149 126 - . . . . . -1 -1 -1 . . . scaffold452 WUBlastX LINE_RTE-X 12205 12483 62 + . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_RTE-X 7169 7468 112 - . . scaffold783 GLEAN mRNA 2790 33865 0.358594 + . ID=CGI_10011675; scaffold993 WUBlastX LINE_RTE-X 90444 91046 103 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-X 731545 731655 63 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_Maverick 493228 493434 135 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 544266 544742 36 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_Sola 2924 3268 63 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_TcMar-Tc1 431578 431886 97 - . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LINE_L2 9315 9545 108 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L2 708334 708765 51 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_L2 319166 319435 71 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_L2 372932 373099 21 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold34 WUBlastX LINE_CR1-L2 126330 126731 115 + . . . . . -1 -1 -1 . . . scaffold33082 WUBlastX LINE_CR1-L2 7483 7776 65 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold145 WUBlastX DNA_Crypton 642490 642894 88 - . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold825 WUBlastX LTR_Ngaro 242978 243289 88 + . . scaffold825 GLEAN mRNA 241324 246750 1 - . ID=CGI_10012714; scaffold754 WUBlastX LTR_Ngaro 118012 118254 127 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LTR_Ngaro 156150 156680 57 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_DIRS 96577 96657 22 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX DNA_En-Spm 128213 128449 78 - . . scaffold206 GLEAN mRNA 123903 131741 0.999975 - . ID=CGI_10011374; scaffold885 WUBlastX LTR_Gypsy 247558 247929 31 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 589746 590411 100 + . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_Kolobok-IS4 62141 62275 33 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1-Tx1 211941 212417 110 + . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LINE_L1 39143 39409 110 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L1 478963 478998 21 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_CR1 64397 64501 24 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L1 516313 516534 40 + . . scaffold591 GLEAN mRNA 499941 525575 0.696977 - . ID=CGI_10027572; scaffold591 WUBlastX LINE_L1 516531 516875 75 + . . scaffold591 GLEAN mRNA 499941 525575 0.696977 - . ID=CGI_10027572; scaffold198 WUBlastX DNA_TcMar-Tc1 132509 132937 53 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 132509 132937 53 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold1188 WUBlastX LTR_Gypsy 646031 646528 30 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_RTE-X 723983 724759 24 - . . . . . -1 -1 -1 . . . C15904 WUBlastX LINE_RTE-X 61 336 140 + . . . . . -1 -1 -1 . . . scaffold1511 WUBlastX LINE_RTE-X 76150 76251 20 + . . . . . -1 -1 -1 . . . C31694 WUBlastX LINE_RTE-X 403 588 20 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LTR_DIRS 232615 232818 120 - . . scaffold1382 GLEAN mRNA 229926 239669 0.88642 - . ID=CGI_10011181; scaffold164 WUBlastX LTR_Gypsy 53501 53704 113 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold1241 WUBlastX LINE_L1-Tx1 207454 207759 71 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX RC_Helitron 43904 44905 70 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold1845 WUBlastX LINE_L1-Tx1 144017 144142 36 + . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_L1-Tx1 475176 475301 37 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_CR1-L2 35949 36269 131 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L2 1842 2114 119 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_CR1-L2 70118 70414 83 - . . . . . -1 -1 -1 . . . scaffold839 WUBlastX LINE_CR1 88347 88958 79 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LTR_Gypsy 27487 28287 127 - . . . . . -1 -1 -1 . . . scaffold487 WUBlastX LTR_Gypsy 384723 384974 80 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LTR_Gypsy 203671 204564 94 - . . . . . -1 -1 -1 . . . scaffold1615 WUBlastX LTR_Gypsy-Cigr 4789 5028 131 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 118191 118343 26 + . . . . . -1 -1 -1 . . . scaffold18 WUBlastX DNA_hAT-Tip100 1456 2184 105 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Gypsy 317554 318393 57 + . . . . . -1 -1 -1 . . . scaffold42634 WUBlastX DNA_TcMar-Fot1 150196 150900 134 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L1 874098 874304 143 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Kolobok 485931 486083 44 + . . . . . -1 -1 -1 . . . scaffold1418 WUBlastX DNA_IS4EU 16572 16769 44 + . . . . . -1 -1 -1 . . . scaffold35238 WUBlastX LINE_L1-Tx1 1877 2134 24 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_L1-Tx1 142799 143392 73 - . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LINE_RTE-X 78120 78305 76 - . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold115 WUBlastX LINE_RTE-X 675272 675604 118 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 137534 137722 24 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold479 WUBlastX DNA_Maverick 410854 410985 42 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 587148 587666 100 - . . . . . -1 -1 -1 . . . scaffold40038 WUBlastX LTR_ERVK 6139 6237 47 - . . scaffold40038 GLEAN mRNA 5272 10964 1 - . ID=CGI_10003771; scaffold40038 WUBlastX LTR_ERVK 6718 6843 72 - . . scaffold40038 GLEAN mRNA 5272 10964 1 - . ID=CGI_10003771; scaffold1166 WUBlastX LTR_Ngaro 133718 134122 56 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 134242 134415 28 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LINE_L1-Tx1 138146 138619 99 - . . . . . -1 -1 -1 . . . scaffold193 WUBlastX LINE_L1-Tx1 228148 228513 89 + . . scaffold193 GLEAN mRNA 225142 231463 0.959713 + . ID=CGI_10015231; scaffold449 WUBlastX LINE_L1-Tx1 142212 142784 84 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_CR1 560649 561137 123 + . . . . . -1 -1 -1 . . . C28258 WUBlastX LINE_CR1 2581 2967 158 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LINE_CR1 84294 85283 99 - . . scaffold1849 GLEAN mRNA 72001 111634 0.818968 - . ID=CGI_10015914; scaffold41530 WUBlastX LINE_CR1-L2 8842 9114 93 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L2 134588 135058 116 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 318494 318823 64 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_CR1-L2 293405 293545 70 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_CR1 1320 1436 30 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_CR1 53122 53256 49 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold38058 WUBlastX LTR_Gypsy-Cigr 5226 5531 118 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold1670 WUBlastX LTR_DIRS 512923 513024 23 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 484356 484790 84 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold226 WUBlastX LINE_L2 242310 242924 54 + . . . . . -1 -1 -1 . . . scaffold34438 WUBlastX RC_Helitron 10325 10660 62 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_Kolobok-IS4 306133 306339 50 - . . . . . -1 -1 -1 . . . scaffold40832 WUBlastX LINE_I 79602 79667 23 - . . scaffold40832 GLEAN mRNA 51373 82869 0.350561 + . ID=CGI_10004457; scaffold35238 WUBlastX LINE_L1 775 993 80 - . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_TcMar-Tc1 349177 349230 27 + . . . . . -1 -1 -1 . . . C34876 WUBlastX LINE_L2 12371 12544 90 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 169951 170910 150 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold175 WUBlastX LINE_Penelope 160311 161189 79 + . . scaffold175 GLEAN mRNA 158189 167433 0.999624 + . ID=CGI_10021311; scaffold337 WUBlastX LINE_RTE-BovB 570423 570971 102 + . . scaffold337 GLEAN mRNA 562237 577539 1 - . ID=CGI_10028070; scaffold1094 WUBlastX LINE_RTE-X 230810 231313 83 + . . scaffold1094 GLEAN mRNA 207588 241472 0.989752 + . ID=CGI_10021816; scaffold1301 WUBlastX LINE_RTE-X 955501 956004 83 + . . scaffold1301 GLEAN mRNA 940827 961246 0.536299 + . ID=CGI_10027751; scaffold823 WUBlastX LINE_RTE-X 88796 89299 83 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LINE_RTE-X 20513 21247 87 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_RTE-X 416070 416657 78 - . . scaffold594 GLEAN mRNA 414845 416168 0.999391 - . ID=CGI_10016391; scaffold449 WUBlastX LINE_L1 183078 183110 22 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_Sola 452127 452378 55 + . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX LINE_L1-Tx1 78067 78366 179 - . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX LINE_L1-Tx1 78735 79034 179 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_L2 296752 297243 199 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_L2 297252 297902 84 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_L2 297827 298402 91 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_L2 298637 299644 209 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 132390 132773 98 - . . . . . -1 -1 -1 . . . scaffold1696 WUBlastX LINE_RTE-X 75715 76971 876 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 90601 90831 169 - . . . . . -1 -1 -1 . . . scaffold36758 WUBlastX LINE_L2 13434 13544 41 - . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 24798 25013 79 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX DNA_TcMar-Tc2 14077 14952 785 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy 209277 210119 391 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 91583 92296 434 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1-Tx1 168967 169794 203 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1-Tx1 170295 170576 162 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_RTE-X 396802 397551 111 - . . . . . -1 -1 -1 . . . scaffold37278 WUBlastX LTR_DIRS 20680 22452 844 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 111999 112250 263 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 112286 112900 578 + . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX LINE_L2 198843 199358 100 - . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX LINE_L2 199384 199512 28 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 519054 519503 57 - . . . . . -1 -1 -1 . . . scaffold764 WUBlastX LINE_CR1-L2 21996 22457 93 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_CR1-L2 1610589 1610957 87 + . . scaffold150 GLEAN mRNA 1609311 1613969 0.550073 + . ID=CGI_10028691; scaffold520 WUBlastX LTR_Gypsy 61508 61828 152 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 70281 70835 149 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Ngaro 618370 619026 122 - . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX LTR_Ngaro 72493 73323 59 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Ngaro 504856 505146 132 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_En-Spm 17536 17958 105 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 428690 429046 102 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 221757 221876 63 - . . . . . -1 -1 -1 . . . scaffold41666 WUBlastX DNA_Harbinger 115247 115750 145 + . . scaffold41666 GLEAN mRNA 111874 117299 0.700617 - . ID=CGI_10005377; scaffold433 WUBlastX LINE_R2-Hero 675056 675157 29 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX RC_Helitron 284937 285227 153 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_MuDR 875302 875658 153 - . . scaffold619 GLEAN mRNA 870805 880758 0.920529 - . ID=CGI_10025790; scaffold1570 WUBlastX DNA_P 16312 17103 118 + . . scaffold1570 GLEAN mRNA 10930 17344 0.990546 + . ID=CGI_10002599; scaffold383 WUBlastX LINE_RTE-X 424663 424869 52 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_Maverick 825571 825798 134 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX DNA_Maverick 90261 90971 142 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_PiggyBac 608523 608678 56 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold425 WUBlastX LTR_Gypsy 528909 529976 36 - . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LTR_DIRS 58049 58726 145 + . . . . . -1 -1 -1 . . . scaffold1503 WUBlastX DNA_TcMar-Tc1 57006 57347 148 - . . scaffold1503 GLEAN mRNA 55967 67698 1 + . ID=CGI_10009528; scaffold105 WUBlastX LTR_Pao 301259 301516 171 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy-Cigr 4783 4977 134 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 7765 7938 60 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_L1-Tx1 34394 35026 373 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_L1-Tx1 35025 35516 186 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_L1-Tx1 35527 36009 160 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_L1-Tx1 35976 36281 190 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-BovB 303934 304200 63 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold1123 WUBlastX LTR_Ngaro 264565 265779 762 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 429984 432083 1036 - . . . . . -1 -1 -1 . . . scaffold36748 WUBlastX LINE_RTE-X 15598 17643 618 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Pao 46735 47061 42 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold595 WUBlastX LINE_CR1-L2 523 840 55 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 259130 259249 64 - . . . . . -1 -1 -1 . . . scaffold180 WUBlastX LTR_Gypsy 72335 72745 166 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_En-Spm 615204 615356 67 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold1217 WUBlastX LTR_Ngaro 50138 50176 31 + . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LTR_Ngaro 90908 91450 115 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Ngaro 396864 397406 113 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_DIRS 469641 469814 74 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_DIRS 52257 52562 154 - . . scaffold335 GLEAN mRNA 36330 53474 0.791399 - . ID=CGI_10017083; scaffold1174 WUBlastX DNA_hAT-Blackja 1075123 1075275 22 - . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; C20530 WUBlastX DNA_IS4EU 503 787 101 + . . . . . -1 -1 -1 . . . scaffold441 WUBlastX DNA_IS4EU 43670 43837 106 + . . . . . -1 -1 -1 . . . scaffold441 WUBlastX DNA_IS4EU 43825 43962 76 + . . . . . -1 -1 -1 . . . scaffold38458 WUBlastX DNA_Harbinger 53837 53986 64 + . . scaffold38458 GLEAN mRNA 38002 56000 0.84332 + . ID=CGI_10002784; C27570 WUBlastX DNA_Harbinger 930 1331 153 - . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX DNA_Harbinger 60463 60699 89 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Kolobok 207676 208011 173 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold1707 WUBlastX LINE_L2 55451 55525 41 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 133468 134022 122 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 168678 169145 61 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 169300 169695 21 + . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_RTE-X 171553 171906 107 + . . scaffold1821 GLEAN mRNA 167929 177659 0.681651 - . ID=CGI_10011291; scaffold36462 WUBlastX LINE_RTE-X 20713 20754 23 - . . scaffold36462 GLEAN mRNA 15214 26775 0.999351 - . ID=CGI_10001929; scaffold1518 WUBlastX LINE_RTE-BovB 95565 95798 82 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_PiggyBac 231261 231434 104 + . . . . . -1 -1 -1 . . . scaffold34696 WUBlastX DNA_Maverick 19701 20060 104 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX DNA_Maverick 196664 196888 116 + . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 35497 35688 86 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 228964 229626 51 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 261833 262174 67 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_RTE-X 141678 141830 60 + . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LTR_DIRS 194345 194611 67 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_L1-Tx1 297758 297937 40 + . . . . . -1 -1 -1 . . . scaffold40584 WUBlastX LINE_L1-Tx1 58457 59029 129 + . . scaffold40584 GLEAN mRNA 39320 59449 0.702301 + . ID=CGI_10004249; scaffold1894 WUBlastX LINE_L2 73998 74549 419 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L2 74572 76059 479 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 241681 241980 140 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 243797 244321 305 + . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy 24261 26228 1116 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold756 WUBlastX LTR_Gypsy 353009 354403 277 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold1583 WUBlastX LTR_DIRS 539993 541126 700 + . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_RTE-X 39179 39418 50 - . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 17647 17778 42 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Maverick 622192 623190 288 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L2 315745 315957 125 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold1066 WUBlastX LTR_Gypsy 268045 268437 302 - . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_RTE-BovB 587674 588210 275 - . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_RTE-BovB 589438 589665 164 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_CR1-L2 251000 251788 102 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Pao 910902 911099 135 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_DIRS 740020 740586 148 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L2 67240 67452 48 + . . . . . -1 -1 -1 . . . scaffold41452 WUBlastX LINE_L2 62547 63113 69 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; C23428 WUBlastX LTR_Ngaro 1897 2163 183 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LTR_Gypsy 37553 38206 169 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_Harbinger 482625 482813 91 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_Jockey 157392 157514 39 + . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_TcMar-Tc1 348259 348486 36 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_MuDR 160062 160361 99 - . . . . . -1 -1 -1 . . . scaffold40952 WUBlastX LINE_Penelope 1518 1895 127 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1 100972 101379 134 - . . . . . -1 -1 -1 . . . scaffold148 WUBlastX LINE_Jockey 33889 34398 139 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1-Tx1 1078581 1078859 148 + . . scaffold337 GLEAN mRNA 1058886 1083021 0.758954 + . ID=CGI_10028091; C35532 WUBlastX LINE_RTE-BovB 21574 22308 169 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_Proto2 1102753 1103523 118 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-X 11697 11870 43 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 190470 190682 41 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX DNA_TcMar-Tc1 398659 398919 117 + . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX DNA_TcMar-Tc1 79810 80064 68 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_CR1-L2 63516 65507 1060 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_En-Spm 1177775 1179697 1165 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 155480 156181 155 + . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_RTE-X 128541 129923 911 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold1249 WUBlastX LINE_RTE-X 129898 130281 182 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold419 WUBlastX LTR_Gypsy-Cigr 496214 496378 75 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy-Cigr 496450 497292 378 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy-Cigr 499940 500053 22 - . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX DNA_Helitron 80420 81085 58 + . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX DNA_Helitron 81098 82051 24 + . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX DNA_Helitron 83177 85558 546 + . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX DNA_Maverick 132488 132742 232 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 101433 102872 560 - . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy 360995 361051 24 + . . . . . -1 -1 -1 . . . C35532 WUBlastX LINE_RTE-BovB 24349 25371 856 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LTR_Gypsy-Cigr 114216 114719 183 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L2 686530 687123 135 - . . . . . -1 -1 -1 . . . C28006 WUBlastX LINE_CR1-L2 3993 4169 46 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Gypsy-Cigr 428304 428882 171 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LTR_Ngaro 85516 85797 133 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 227897 228676 102 - . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LTR_Ngaro 171737 172504 107 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold483 WUBlastX LINE_L2 26249 26950 139 - . . . . . -1 -1 -1 . . . C30514 WUBlastX DNA_Crypton 1533 2249 90 - . . . . . -1 -1 -1 . . . scaffold39582 WUBlastX LINE_L1 60333 60902 65 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1-Tx1 199468 199833 56 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_MuDR 192282 192875 191 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX DNA_TcMar-Marin 21729 22115 100 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 349309 349716 133 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LTR_Pao 215621 215674 43 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold42880 WUBlastX DNA_Maverick 59314 59850 84 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 298997 299506 124 + . . scaffold351 GLEAN mRNA 298327 302475 0.747441 - . ID=CGI_10022603; scaffold1448 WUBlastX LINE_RTE-X 3545 3646 27 - . . scaffold1448 GLEAN mRNA 631 18510 0.999948 + . ID=CGI_10011852; scaffold43986 WUBlastX LINE_RTE-X 349956 350471 97 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 450297 450836 92 - . . scaffold854 GLEAN mRNA 397662 453116 0.849104 + . ID=CGI_10022252; scaffold44054 WUBlastX LINE_RTE-X 112942 113037 68 + . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-X 14289 14486 35 + . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX LINE_L1-Tx1 108034 108411 76 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; C20808 WUBlastX LINE_L1-Tx1 404 1198 66 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LTR_Gypsy 517035 520469 1157 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 6003 6374 214 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy 107275 107769 120 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy 107765 109177 816 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy 109236 110447 219 + . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX LINE_L1-Tx1 18105 18785 323 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 18788 19771 639 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 19807 20025 78 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold62 WUBlastX LINE_CR1-L2 123784 124737 575 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_Helitron 223092 223409 48 + . . . . . -1 -1 -1 . . . scaffold635 WUBlastX LTR_Gypsy 44729 45499 182 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LTR_Gypsy 17347 18093 173 + . . . . . -1 -1 -1 . . . scaffold1058 WUBlastX LTR_Gypsy? 35946 37097 22 - . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LTR_Ngaro 228312 228788 106 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LTR_DIRS 18668 19066 25 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LTR_DIRS 19677 19826 69 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_IS4EU 367264 367431 85 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX DNA_Kolobok-IS4 217416 218144 131 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold274 WUBlastX LTR_Gypsy 120481 120570 44 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120481 120570 44 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold339 WUBlastX DNA_Harbinger 30105 30215 94 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX DNA_Harbinger 30536 30781 54 - . . . . . -1 -1 -1 . . . scaffold38736 WUBlastX DNA_Harbinger 50224 50367 65 + . . scaffold38736 GLEAN mRNA 50218 50844 1 + . ID=CGI_10002944; scaffold38736 WUBlastX DNA_Harbinger 50560 50829 81 + . . scaffold38736 GLEAN mRNA 50218 50844 1 + . ID=CGI_10002944; scaffold1863 WUBlastX DNA_Harbinger 180164 180361 67 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX DNA_Harbinger 180358 180555 86 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Harbinger 129025 129540 112 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_Jockey 394568 394639 26 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LINE_L1-Tx1 32170 33147 89 - . . . . . -1 -1 -1 . . . scaffold129 WUBlastX LINE_L1-Tx1 45198 45503 35 - . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_L1 54463 54657 116 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold150 WUBlastX LINE_L1 577946 578377 30 + . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_Ngaro 55506 56339 165 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold99 WUBlastX LINE_Penelope 182653 183054 158 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-BovB 165776 165952 89 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-BovB 166137 166307 62 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-BovB 166748 166873 60 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_RTE-X 6073 6474 131 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_RTE-X 379445 379873 128 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 7292 7543 101 - . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX DNA_Sola 22989 24050 40 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 1563172 1563381 27 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1-Tx1 10504 10599 31 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1719 WUBlastX LINE_L1-Tx1 8365 8625 31 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LINE_L1-Tx1 8624 9307 86 - . . . . . -1 -1 -1 . . . scaffold39470 WUBlastX LINE_DRE 47414 47485 23 + . . scaffold39470 GLEAN mRNA 37603 51823 0.681651 + . ID=CGI_10003380; scaffold150 WUBlastX LINE_L1-Tx1 68241 68468 112 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 730598 731683 295 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 731686 733371 806 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 487477 489702 948 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy-Cigr 485939 487354 506 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_L1-Tx1 147285 147680 120 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold43538 WUBlastX LINE_CR1 155110 155847 166 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold354 WUBlastX LTR_Gypsy 38651 38800 28 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 525513 525800 213 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 330 533 43 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LTR_DIRS 619085 619966 148 - . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_Kolobok-IS4 8330 8512 57 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_IS4EU 838385 838900 94 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX RC_Helitron 772172 772654 140 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_L1 94286 94936 190 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_TcMar-Tc1 317064 317363 144 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_RTE-X 52746 53246 113 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_RTE-X 51739 51771 20 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-X 485373 485798 92 + . . . . . -1 -1 -1 . . . scaffold43494 WUBlastX LTR_Ngaro 53763 53954 113 - . . . . . -1 -1 -1 . . . scaffold935 WUBlastX DNA_Sola 52356 53135 94 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX DNA_TcMar-Tc1 289670 290191 45 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 4885 5550 234 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Pao 688783 688932 167 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LTR_Gypsy 64509 67166 1213 - . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX LINE_RTE-BovB 142658 143488 643 - . . scaffold1884 GLEAN mRNA 133392 150395 0.998261 + . ID=CGI_10012014; scaffold398 WUBlastX LINE_Jockey 3466 4479 128 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold1615 WUBlastX LTR_Gypsy 4469 4795 122 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy 76326 76487 35 - . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_hAT-Tip100 173323 173817 101 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_Kolobok-IS4 10468 10644 49 + . . . . . -1 -1 -1 . . . scaffold487 WUBlastX LINE_Jockey 9469 9795 39 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 303928 304089 71 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_TcMar-Fot1 253664 254272 197 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 189656 189784 97 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_L1-Tx1 77714 77878 82 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_L1-Tx1 77856 78101 145 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L1 455743 456276 184 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX LINE_RTE-X 113779 113835 26 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-BovB 1806 1916 32 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1097 WUBlastX LINE_RTE-BovB 683153 683311 88 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold713 WUBlastX LINE_RTE-BovB 41685 41813 68 - . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_L1-Tx1 30574 30681 47 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1-Tx1 388401 388892 186 - . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX LINE_L1-Tx1 245137 248601 1041 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy-Cigr 162728 163984 526 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L2 285447 285980 85 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold22 WUBlastX LTR_DIRS 786280 787035 121 - . . . . . -1 -1 -1 . . . scaffold1140 WUBlastX DNA_Crypton 3931 4365 53 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX DNA_Crypton 500122 500556 53 + . . scaffold160 GLEAN mRNA 498862 500159 0.994424 + . ID=CGI_10020604; scaffold41534 WUBlastX DNA_Harbinger 107685 107819 91 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Harbinger 73822 73971 100 + . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX LINE_L1-Tx1 196577 197038 171 + . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX LINE_L1-Tx1 197032 197091 61 + . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold257 WUBlastX DNA_TcMar-Tc2 476432 477064 223 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 767232 767591 44 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 767748 768065 156 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_Penelope 188324 189496 137 + . . . . . -1 -1 -1 . . . scaffold42096 WUBlastX LINE_RTE-X 105186 105578 199 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold41356 WUBlastX LTR_Ngaro 12694 13281 110 - . . scaffold41356 GLEAN mRNA 5844 20035 0.990026 - . ID=CGI_10004993; scaffold241 WUBlastX LINE_L1-Tx1 125084 125791 59 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold36642 WUBlastX LINE_L1-Tx1 2482 2808 68 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold266 WUBlastX LTR_Gypsy 282405 283628 60 - . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX LINE_L1-Tx1 82696 82752 32 + . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX LINE_L1-Tx1 82772 83470 348 + . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX LINE_L1-Tx1 83550 84242 355 + . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX LINE_L1-Tx1 84157 85146 616 + . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX LINE_L1-Tx1 85642 86265 75 + . . . . . -1 -1 -1 . . . scaffold1600 WUBlastX LTR_Gypsy 252058 253941 1556 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_Gypsy-Cigr 161921 165601 1622 - . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_L2 82415 82912 193 + . . . . . -1 -1 -1 . . . scaffold42516 WUBlastX DNA_hAT 71914 72471 236 - . . scaffold42516 GLEAN mRNA 66087 74671 0.495617 - . ID=CGI_10007107; scaffold1097 WUBlastX LTR_Gypsy 79522 79629 46 + . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX DNA_IS4EU 37602 37955 35 + . . scaffold39358 GLEAN mRNA 36445 38443 0.716437 + . ID=CGI_10003326; scaffold849 WUBlastX LINE_Penelope 8986 9225 135 + . . . . . -1 -1 -1 . . . scaffold849 WUBlastX LINE_Penelope 9397 9585 32 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_RTE-X 316384 317085 155 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1-Tx1 155218 155565 62 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Gypsy 26646 26915 51 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_L2 175071 176438 736 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_L2 176434 177747 695 - . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX DNA_Academ 40352 40852 171 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 114823 115071 59 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 538307 538552 176 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_DIRS 583578 584117 42 - . . . . . -1 -1 -1 . . . C34110 WUBlastX DNA_IS4EU 12772 13209 174 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold9 WUBlastX LTR_Ngaro 87496 87729 132 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1 73439 73555 24 - . . . . . -1 -1 -1 . . . scaffold1763 WUBlastX LINE_RTE-X 114508 115221 147 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_Proto2 444300 444896 42 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 17716 17748 24 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold576 WUBlastX LTR_Gypsy 31979 32065 33 - . . . . . -1 -1 -1 . . . C31386 WUBlastX LTR_Gypsy 7124 9346 1808 - . . . . . -1 -1 -1 . . . C31386 WUBlastX LTR_Gypsy 9349 9390 21 - . . . . . -1 -1 -1 . . . scaffold309 WUBlastX LTR_Gypsy 134925 136517 666 + . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Pao 31845 32069 81 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_CR1-L2 81285 81989 199 + . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold41304 WUBlastX LTR_Ngaro 84247 84606 140 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Ngaro 255113 255823 174 - . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX LTR_Ngaro 113012 113461 226 + . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LTR_DIRS 51442 52107 208 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX DNA_Crypton 107220 108275 172 + . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold39966 WUBlastX LTR_Gypsy 57787 58002 26 - . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX DNA_Harbinger 47564 47995 218 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 100676 101476 98 - . . . . . -1 -1 -1 . . . scaffold1549 WUBlastX LINE_L2 49417 49968 223 - . . . . . -1 -1 -1 . . . C29186 WUBlastX LINE_RTE-X 383 1144 216 - . . C29186 GLEAN mRNA 314 4810 0.999064 - . ID=CGI_10000500; C34726 WUBlastX DNA_Maverick 9983 10384 229 + . . C34726 GLEAN mRNA 9188 12912 0.93708 - . ID=CGI_10001353; scaffold40492 WUBlastX LINE_RTE-BovB 45189 45413 31 + . . . . . -1 -1 -1 . . . C29424 WUBlastX LINE_RTE-X 438 1127 142 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-X 78828 79277 227 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_Sola 524025 524681 81 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 100792 101001 92 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L1-Tx1 288194 288334 29 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L1-Tx1 288439 289161 94 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 800115 802553 1238 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold38290 WUBlastX LTR_Copia 4695 6407 904 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 1179521 1180378 59 - . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_L2 1621 2367 111 + . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_L2 2378 2803 33 + . . . . . -1 -1 -1 . . . C30058 WUBlastX LINE_L2 1609 2175 192 + . . C30058 GLEAN mRNA 650 4812 0.700712 - . ID=CGI_10000592; scaffold557 WUBlastX LINE_L2 153236 153661 62 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_CR1-L2 27226 27696 114 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_CR1-L2 360174 360518 169 - . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; C35794 WUBlastX LINE_L2 12974 13183 84 - . . . . . -1 -1 -1 . . . C23734 WUBlastX LTR_Gypsy 26 964 217 - . . C23734 GLEAN mRNA 512 712 1 - . ID=CGI_10000149; C30728 WUBlastX LTR_Gypsy 7000 7710 245 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Gypsy 392936 394006 277 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LTR_Gypsy 137313 137708 298 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 159229 159282 20 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 438362 438718 92 - . . . . . -1 -1 -1 . . . scaffold1514 WUBlastX DNA_IS4EU 57944 58333 240 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L1-Tx1 365340 366320 151 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold461 WUBlastX DNA_Maverick 543425 544219 108 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_RTE-X 198891 199361 168 + . . scaffold925 GLEAN mRNA 185655 201680 0.878781 - . ID=CGI_10017418; scaffold1900 WUBlastX LINE_RTE-X 374990 375946 166 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1-Tx1 867486 868412 36 - . . . . . -1 -1 -1 . . . C21396 WUBlastX LINE_L1-Tx1 373 1257 94 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Gypsy-Cigr 391940 393997 247 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LTR_Gypsy-Cigr 116269 117129 274 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 182349 182474 82 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy 37412 37504 25 + . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LTR_DIRS 212375 212608 43 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 488035 488523 276 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy 364320 364445 41 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 380085 380918 241 - . . . . . -1 -1 -1 . . . C31322 WUBlastX LINE_RTE-X 7291 8349 161 - . . C31322 GLEAN mRNA 2728 8628 1 - . ID=CGI_10000731; scaffold1488 WUBlastX LINE_RTE-X 99183 99683 217 - . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold1249 WUBlastX LINE_RTE-X 352686 353453 130 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy-Cigr 91115 92638 822 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold541 WUBlastX LINE_CR1 468134 468199 22 + . . scaffold541 GLEAN mRNA 466590 480582 0.782383 + . ID=CGI_10022394; scaffold71 WUBlastX LINE_L2 265455 266858 128 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_CR1-L2 567670 567921 27 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold581 WUBlastX LTR_Gypsy 206997 207164 106 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 203176 203772 128 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LINE_L1-Tx1 301666 302058 147 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 51401 51943 115 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_Penelope 273755 274159 72 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_Penelope 274332 274655 57 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 317401 318486 147 - . . . . . -1 -1 -1 . . . scaffold38272 WUBlastX LINE_L1-Tx1 39118 39321 24 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold626 WUBlastX LINE_L1-Tx1 500257 501195 472 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 501134 503440 1287 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Pao 107107 107199 62 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Pao 107165 109327 988 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Pao 109330 109722 339 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 58756 60186 114 - . . . . . -1 -1 -1 . . . scaffold993 WUBlastX LINE_L2 223885 224265 218 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 281283 281888 311 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LTR_Gypsy 129091 129255 28 - . . scaffold305 GLEAN mRNA 114232 133246 0.986225 - . ID=CGI_10019117; scaffold35960 WUBlastX LINE_L1 19646 20380 235 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_Penelope 220334 220582 75 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_RTE-X 259993 260469 134 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX DNA_TcMar-Tc1 18292 18795 201 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_TcMar-Tc1 79204 79470 72 + . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX LINE_L1-Tx1 133382 137185 1935 + . . scaffold43150 GLEAN mRNA 121679 138901 1 + . ID=CGI_10009035; scaffold1255 WUBlastX DNA_hAT 377258 378478 257 - . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX DNA_hAT 379013 379195 57 - . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1521 WUBlastX DNA_hAT-Tip100 4955 5113 27 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Pao 703861 704424 173 + . . scaffold854 GLEAN mRNA 698978 729843 0.21294 + . ID=CGI_10022264; scaffold977 WUBlastX LTR_Gypsy 210585 210971 107 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 24741 25022 47 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX DNA_hAT-Ac 221220 221939 150 - . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX DNA_Kolobok-IS4 24031 24411 109 - . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold41776 WUBlastX LINE_Penelope 116300 117421 209 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 30702 31013 67 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 31031 31375 38 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 31360 31542 92 - . . . . . -1 -1 -1 . . . C27086 WUBlastX DNA_TcMar-Marin 121 582 101 + . . . . . -1 -1 -1 . . . scaffold465 WUBlastX LINE_CR1-L2 1774 2094 50 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 82122 82766 294 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_DIRS? 1518 2039 144 - . . . . . -1 -1 -1 . . . scaffold35970 WUBlastX LTR_Gypsy 27212 27952 323 + . . . . . -1 -1 -1 . . . scaffold41852 WUBlastX DNA_Harbinger 109091 109294 98 - . . scaffold41852 GLEAN mRNA 107517 110100 0.999855 + . ID=CGI_10005735; scaffold41852 WUBlastX DNA_Harbinger 109290 109565 179 - . . scaffold41852 GLEAN mRNA 107517 110100 0.999855 + . ID=CGI_10005735; scaffold908 WUBlastX LINE_L1-Tx1 222648 223544 160 + . . . . . -1 -1 -1 . . . scaffold187 WUBlastX LTR_Ngaro 15341 15400 48 + . . . . . -1 -1 -1 . . . scaffold187 WUBlastX LTR_Ngaro 15399 15596 86 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_TcMar-Fot1 169066 170421 305 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LINE_RTE-X 173334 173861 41 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LINE_RTE-X 173812 174285 196 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_RTE-X 251245 251469 119 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 88226 89734 1028 - . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Pao 47778 47939 61 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_DIRS 564240 564437 71 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold780 WUBlastX LTR_Ngaro 968068 968217 95 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold114 WUBlastX DNA_Crypton 18684 19766 245 + . . . . . -1 -1 -1 . . . scaffold465 WUBlastX DNA_IS4EU 68447 68989 203 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX RC_Helitron 617111 617764 280 + . . . . . -1 -1 -1 . . . scaffold40346 WUBlastX DNA_TcMar-Tc1 23940 24869 258 - . . scaffold40346 GLEAN mRNA 23217 29434 0.99961 - . ID=CGI_10004041; scaffold659 WUBlastX LINE_L1-Tx1 99875 100777 179 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_Kolobok 332260 332496 79 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold1380 WUBlastX LINE_RTE-X 48937 49833 211 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LINE_RTE-X 243849 244232 56 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold833 WUBlastX LINE_RTE-X 240088 240384 79 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 478067 478438 286 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 356061 356489 114 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1-Tx1 100092 100235 79 - . . . . . -1 -1 -1 . . . C25328 WUBlastX LINE_CR1-L2 852 1082 141 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_hAT-Ac 363773 364138 49 + . . . . . -1 -1 -1 . . . scaffold1477 WUBlastX DNA_IS4EU 36975 37286 238 + . . . . . -1 -1 -1 . . . scaffold1286 WUBlastX DNA_MuDR 161745 162404 198 + . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_RTE-X 13377 13769 203 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX DNA_hAT-Tip100 43902 44114 42 + . . scaffold243 GLEAN mRNA 30219 44504 0.996041 + . ID=CGI_10006813; scaffold1217 WUBlastX LTR_Ngaro 51138 51419 42 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Ngaro 141694 141909 96 - . . . . . -1 -1 -1 . . . scaffold33638 WUBlastX DNA_IS4EU 4573 5325 281 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX DNA_IS4EU 411671 412183 20 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX DNA_IS4EU 412114 412581 225 + . . . . . -1 -1 -1 . . . scaffold32064 WUBlastX DNA_IS4EU 6387 6686 163 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX DNA_Harbinger 177662 177811 56 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX DNA_Harbinger 178294 178695 88 - . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX DNA_Harbinger 111108 112112 249 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LINE_L1 21714 23249 232 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 63392 63595 29 - . . . . . -1 -1 -1 . . . scaffold215 WUBlastX LINE_RTE-BovB 155968 156450 178 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold248 WUBlastX LINE_L1-Tx1 404287 404493 63 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX DNA_TcMar-Tc2 14095 15117 260 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Academ 258059 258244 65 - . . . . . -1 -1 -1 . . . scaffold37468 WUBlastX LTR_Gypsy 30700 31527 300 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_Penelope 274335 274541 89 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_TcMar-Fot1 551529 552440 48 + . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX DNA_TcMar-Pogo 96494 97099 285 + . . . . . -1 -1 -1 . . . scaffold39212 WUBlastX DNA_Sola 46459 47070 91 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold53 WUBlastX DNA_Sola 950345 950752 84 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 688084 688629 297 - . . scaffold1750 GLEAN mRNA 688402 691316 0.700377 - . ID=CGI_10021502; scaffold790 WUBlastX LINE_L1-Tx1 128255 129022 224 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LINE_L1-Tx1 58995 59294 33 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LINE_L1-Tx1 59600 59887 32 + . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy-Cigr 130834 131148 208 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_CR1 1085413 1085628 139 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Gypsy-Cigr 540810 541400 114 + . . . . . -1 -1 -1 . . . scaffold265 WUBlastX LTR_Ngaro 32354 32701 104 - . . . . . -1 -1 -1 . . . scaffold42328 WUBlastX LINE_RTE-BovB 27686 28540 325 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_CR1-L2 42347 42610 129 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 426258 426338 30 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 426905 427102 81 - . . . . . -1 -1 -1 . . . C27700 WUBlastX LTR_Gypsy 1907 2068 27 - . . . . . -1 -1 -1 . . . C27700 WUBlastX LTR_Gypsy 2252 2341 25 - . . . . . -1 -1 -1 . . . scaffold38364 WUBlastX DNA_TcMar-Tc1 51961 52632 89 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1 286587 286661 21 + . . scaffold1528 GLEAN mRNA 279511 286973 0.999103 + . ID=CGI_10013228; scaffold1532 WUBlastX LINE_L1-Tx1 1185533 1185943 167 - . . . . . -1 -1 -1 . . . scaffold37080 WUBlastX LINE_CR1-L2 9420 10190 310 + . . . . . -1 -1 -1 . . . scaffold1880 WUBlastX LINE_L2 51497 51853 52 + . . scaffold1880 GLEAN mRNA 5602 92195 0.383639 - . ID=CGI_10008204; scaffold1863 WUBlastX LINE_L2 472164 472772 196 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX LINE_CR1 222530 223129 36 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Fot1 393780 394775 340 - . . scaffold794 GLEAN mRNA 378971 426999 0.796099 - . ID=CGI_10017158; scaffold40264 WUBlastX LINE_Proto2 51777 52571 29 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold1301 WUBlastX DNA_Maverick 46901 47335 232 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 381630 382130 279 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 382139 382273 63 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_RTE-BovB 31821 32141 59 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_RTE-BovB 32122 32400 102 + . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LINE_RTE-X 236370 236795 155 + . . . . . -1 -1 -1 . . . scaffold870 WUBlastX DNA_hAT 47739 47879 61 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold1024 WUBlastX LTR_Gypsy 990126 990341 55 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold34356 WUBlastX LTR_Gypsy 16452 16862 199 + . . . . . -1 -1 -1 . . . scaffold34356 WUBlastX LTR_Gypsy 16873 17061 167 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 90387 90824 45 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX DNA_Sola 24567 24782 52 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold213 WUBlastX DNA_hAT-Tip100 169221 169460 152 + . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_hAT-Tip100 169465 169827 162 + . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_hAT-Tip100 169866 170030 87 + . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold471 WUBlastX LINE_L2 822222 822557 22 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1 523104 523415 137 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Harbinger 57209 57670 70 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold121 WUBlastX LINE_L2 173764 174255 169 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L2 174376 175044 91 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Maverick 524640 525422 294 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1-L2 71560 72081 331 + . . . . . -1 -1 -1 . . . scaffold1452 WUBlastX DNA_hAT 14599 14772 32 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 515695 516492 373 + . . . . . -1 -1 -1 . . . scaffold711 WUBlastX DNA_hAT-Ac 182989 183246 101 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX DNA_Harbinger 161385 162092 373 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; C34436 WUBlastX DNA_NOF? 13070 13171 92 + . . . . . -1 -1 -1 . . . C34436 WUBlastX DNA_NOF? 13165 13395 199 + . . . . . -1 -1 -1 . . . C34436 WUBlastX DNA_NOF? 13422 13667 23 + . . . . . -1 -1 -1 . . . C34436 WUBlastX DNA_NOF? 13941 14216 43 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 89935 90057 55 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1360 WUBlastX LINE_L1 501031 502821 145 + . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX DNA_Maverick 12063 12479 226 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Maverick 1362259 1362885 357 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Maverick 133852 134478 357 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 729957 730157 42 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_RTE-X 132595 132873 132 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_RTE-X 455676 457628 168 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1832 WUBlastX LINE_RTE-X 515732 516757 272 + . . . . . -1 -1 -1 . . . scaffold1567 WUBlastX DNA_TcMar-Tc1 99949 100869 252 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_IS4EU 465872 466957 325 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_Harbinger 363099 363245 59 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_Harbinger 363242 363559 151 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_Harbinger 363556 363981 158 + . . . . . -1 -1 -1 . . . scaffold33026 WUBlastX DNA_TcMar-Tc1 12018 12590 265 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX DNA_TcMar-Tc1 121748 122305 202 + . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_L1-Tx1 3247 4659 177 + . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LTR_Gypsy 50345 51256 350 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L2 1232113 1233720 168 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_IS4EU 23753 24178 166 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 24824 25177 32 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 25949 26350 183 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; C23316 WUBlastX LTR_Ngaro 6 524 402 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 85006 85173 59 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 85376 85615 64 + . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX LTR_Pao 333158 333376 103 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold733 WUBlastX LINE_CR1-L2 123439 124329 318 - . . . . . -1 -1 -1 . . . scaffold38898 WUBlastX LTR_Ngaro 2603 3361 276 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX LTR_Gypsy 165547 165666 28 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-hATw 951909 953348 213 + . . scaffold619 GLEAN mRNA 949722 959476 0.544338 - . ID=CGI_10025794; scaffold41546 WUBlastX DNA_hAT-hATw 87349 88647 133 - . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX DNA_hAT-hATw 88456 89397 60 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LTR_Gypsy 45323 46096 433 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 682490 682747 61 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; C35786 WUBlastX LINE_L1-Tx1 14907 15014 28 - . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy 59591 59695 54 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy-Cigr 323469 324032 409 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX DNA_Crypton 246194 246580 137 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX DNA_Crypton 246753 246944 75 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX DNA_Crypton 247090 247596 217 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 188392 188532 54 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold655 WUBlastX LINE_R2-Hero 222765 223151 34 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_R2-Hero 223730 224185 164 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy-Cigr 22195 22767 318 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold121 WUBlastX LINE_L2 174355 174615 147 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Ngaro 260785 261309 182 + . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX DNA_IS4EU 311130 311705 366 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Harbinger 34431 34553 74 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Harbinger 34720 34806 47 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Harbinger 34893 35090 117 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Harbinger 35230 35427 61 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy 603725 605302 405 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_RTE-X 145242 146270 114 - . . . . . -1 -1 -1 . . . scaffold44064 WUBlastX DNA_TcMar-Tc1 101 967 317 + . . . . . -1 -1 -1 . . . C30792 WUBlastX DNA_TcMar-Tc1 6173 6910 322 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 237786 237869 24 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_Kolobok 205828 206040 69 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold54 WUBlastX LINE_Penelope 504569 506479 319 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1 548484 548807 55 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX LINE_RTE-X 193320 194837 174 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_CR1-L2 77930 78193 85 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_CR1 292318 293079 189 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX DNA_hAT-Ac 143130 143399 134 - . . . . . -1 -1 -1 . . . scaffold292 WUBlastX DNA_TcMar-Tc1 53781 54752 386 + . . scaffold292 GLEAN mRNA 51568 72452 0.660019 + . ID=CGI_10003529; scaffold818 WUBlastX LTR_DIRS 98096 98239 45 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_DIRS 748479 749009 267 - . . . . . -1 -1 -1 . . . scaffold36664 WUBlastX LTR_Gypsy 27699 27977 33 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy-Cigr 51236 51316 25 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LTR_Pao 44804 45748 468 - . . . . . -1 -1 -1 . . . scaffold34388 WUBlastX LTR_Pao 3892 4107 184 - . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LTR_Ngaro 31309 32490 389 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LTR_Ngaro 698384 699304 443 - . . . . . -1 -1 -1 . . . scaffold41628 WUBlastX LINE_L1 96015 96818 421 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 87707 88666 221 - . . . . . -1 -1 -1 . . . scaffold17 WUBlastX LTR_Ngaro 3465 4367 401 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L2 104113 104403 191 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Gypsy 446416 446730 165 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LTR_Gypsy 29623 29853 20 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 32058 32894 358 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 32846 32977 126 - . . . . . -1 -1 -1 . . . scaffold578 WUBlastX DNA_Kolobok 23698 23937 73 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold1097 WUBlastX LTR_Gypsy 863298 863597 20 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold794 WUBlastX LTR_Gypsy 281021 281218 168 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy 281601 282110 280 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold337 WUBlastX RC_Helitron 910919 911131 105 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_L1-Tx1 529164 530129 405 + . . scaffold160 GLEAN mRNA 523738 543493 0.85871 - . ID=CGI_10020606; scaffold305 WUBlastX LINE_RTE-X 91807 92898 363 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_RTE-X 92924 93139 62 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Ngaro 339386 339712 193 + . . scaffold772 GLEAN mRNA 336765 344045 0.544674 + . ID=CGI_10016594; scaffold1132 WUBlastX LINE_RTE-X 318049 318870 241 - . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_L1-Tx1 129338 130081 95 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 132111 132458 72 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold419 WUBlastX LTR_Gypsy 494604 495368 133 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 109452 109925 383 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_RTE-X 286295 286567 148 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_RTE-X 286674 287633 41 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 232885 233166 119 - . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_RTE-X 21765 22076 87 + . . . . . -1 -1 -1 . . . scaffold309 WUBlastX DNA_hAT-Tip100 139676 139912 31 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L2 356444 356950 151 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L2 356953 357384 104 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L2 355948 356232 159 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 101219 101503 163 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 81678 83264 376 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 189092 190066 159 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_CR1-L2 454800 454949 40 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Harbinger 854162 854383 93 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX DNA_Harbinger 148421 148642 93 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX DNA_TcMar-Fot1 89199 89642 174 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX DNA_TcMar-Fot1 89665 90762 338 + . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-BovB 46572 46748 27 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-BovB 48682 48885 90 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 156297 157277 176 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 157719 157946 125 - . . . . . -1 -1 -1 . . . C25178 WUBlastX LTR_Ngaro 795 1217 318 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Ngaro 116405 117916 430 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_DIRS 143154 143861 407 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 98441 98677 41 - . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_L2 47378 47617 54 + . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LINE_L1-Tx1 23064 23900 228 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_L1 153728 154975 289 - . . scaffold712 GLEAN mRNA 144650 156180 1 + . ID=CGI_10016478; scaffold581 WUBlastX LINE_L1-Tx1 19760 19876 26 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold36170 WUBlastX LTR_Gypsy 17770 18273 26 + . . . . . -1 -1 -1 . . . scaffold1509 WUBlastX LINE_CR1-L2 99764 99853 29 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 254343 254516 64 - . . . . . -1 -1 -1 . . . scaffold43184 WUBlastX LINE_RTE-BovB 6499 6621 34 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_RTE-X 936864 937904 452 - . . scaffold469 GLEAN mRNA 925100 941633 0.564574 + . ID=CGI_10024703; scaffold728 WUBlastX LINE_RTE-BovB 217290 217949 487 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 149152 149430 165 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold43076 WUBlastX LTR_Gypsy-Cigr 195503 195568 25 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy-Cigr 195955 196809 453 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold42490 WUBlastX LTR_Gypsy 44314 45321 58 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LTR_Gypsy 165159 166406 338 + . . . . . -1 -1 -1 . . . scaffold371 WUBlastX LINE_RTE-X 40066 40458 48 + . . . . . -1 -1 -1 . . . scaffold39274 WUBlastX LINE_CR1 28885 29349 184 - . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_Gypsy 95027 95614 129 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-X 311407 312300 207 + . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy-Cigr 16547 16768 20 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1-Tx1 293301 293471 35 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_CR1 46404 46976 178 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_CR1 47639 48130 308 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Ngaro 78976 79422 200 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold522 WUBlastX RC_Helitron 534992 535501 26 + . . . . . -1 -1 -1 . . . scaffold522 WUBlastX RC_Helitron 535615 535911 89 + . . . . . -1 -1 -1 . . . scaffold522 WUBlastX RC_Helitron 535922 536542 265 + . . . . . -1 -1 -1 . . . scaffold522 WUBlastX RC_Helitron 536724 537038 97 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy 688234 689337 406 - . . scaffold1750 GLEAN mRNA 688402 691316 0.700377 - . ID=CGI_10021502; scaffold1470 WUBlastX LINE_L1-Tx1 53333 53608 27 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 129817 130206 104 - . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LINE_L1-Tx1 48994 49179 90 - . . . . . -1 -1 -1 . . . C29410 WUBlastX LTR_Gypsy 3 206 20 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 197222 198547 256 - . . . . . -1 -1 -1 . . . scaffold41452 WUBlastX LTR_Gypsy 94608 95963 608 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 1483157 1483357 108 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LTR_Gypsy 63596 63829 75 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_RTE-X 150166 150402 176 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 599736 600350 347 + . . . . . -1 -1 -1 . . . scaffold711 WUBlastX DNA_hAT-Ac 181165 182679 457 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LTR_DIRS 197615 198004 54 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 198398 198976 218 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 199349 199603 51 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 199606 200037 129 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold43598 WUBlastX LTR_Ngaro 164250 165137 555 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 961988 962107 27 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 230238 230669 27 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_Gypsy 453984 454421 47 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold1009 WUBlastX DNA_hAT-hATw 553006 554271 174 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L1-Tx1 1079841 1080632 483 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_L1-Tx1 929853 929936 26 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-X 803224 803541 178 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 915075 915239 46 - . . scaffold337 GLEAN mRNA 912502 926173 0.999981 - . ID=CGI_10028087; scaffold1500 WUBlastX LTR_Gypsy 67172 68068 676 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1-Tx1 464358 465029 76 - . . scaffold305 GLEAN mRNA 449845 466663 0.999234 + . ID=CGI_10019141; scaffold1315 WUBlastX LTR_DIRS 517555 518571 634 - . . . . . -1 -1 -1 . . . scaffold959 WUBlastX LTR_DIRS 3335 4351 634 + . . . . . -1 -1 -1 . . . scaffold38348 WUBlastX DNA_PiggyBac 3624 5258 566 - . . . . . -1 -1 -1 . . . scaffold724 WUBlastX DNA_TcMar-Tc1 86107 87102 491 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 129854 130504 40 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 131710 131856 33 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_DIRS 859790 860167 161 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_DIRS 860268 861368 370 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1 240748 241095 111 - . . . . . -1 -1 -1 . . . scaffold1299 WUBlastX LINE_RTE-BovB 141262 141357 69 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 141478 141612 81 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold35712 WUBlastX LINE_RTE-X 6243 6764 187 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold177 WUBlastX LINE_L2 78133 79707 280 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_L2 79779 80147 100 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_Harbinger 777386 778279 638 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Maverick 121411 122514 624 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 410296 410694 102 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold1532 WUBlastX LINE_RTE-X 410766 410960 51 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold113 WUBlastX LINE_CR1 422973 423188 95 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LTR_Ngaro 107779 108111 140 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold271 WUBlastX LINE_RTE-X 937727 937876 20 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-X 937993 938658 157 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-X 938766 939293 398 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_L1-Tx1 113238 115175 425 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 191201 191377 25 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 567381 567578 147 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-BovB 1144084 1145004 309 - . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LINE_RTE-X 147356 148459 671 - . . . . . -1 -1 -1 . . . scaffold194 WUBlastX RC_Helitron 240913 240987 33 + . . . . . -1 -1 -1 . . . scaffold194 WUBlastX RC_Helitron 240990 241445 331 + . . . . . -1 -1 -1 . . . scaffold194 WUBlastX RC_Helitron 242460 244085 284 + . . . . . -1 -1 -1 . . . scaffold194 WUBlastX RC_Helitron 244829 244960 45 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 1113498 1114127 132 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 1114163 1114507 218 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX RC_Helitron 6972 8228 176 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold752 WUBlastX LTR_Gypsy 228737 229510 72 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1-Tx1 134982 135359 190 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1-Tx1 135286 136614 183 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 266089 267036 339 - . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LINE_R2-Hero 327920 328057 72 - . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LINE_R2-Hero 330217 330366 66 - . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LINE_R2-Hero 330365 330739 94 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 150717 151376 355 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-X 421460 421693 63 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_DIRS 784687 785103 130 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Gypsy 194263 194850 147 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold1244 WUBlastX LINE_L1-Tx1 196026 196721 299 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1-Tx1 197342 197917 235 - . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX DNA_hAT-Tip100 327250 328767 771 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_TcMar-Fot1 1061309 1063090 770 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_RTE-X 131364 132887 583 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold329 WUBlastX LTR_Pao 147060 147470 362 - . . . . . -1 -1 -1 . . . C34010 WUBlastX LTR_Ngaro 13129 13608 289 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 266857 267444 197 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 756879 757265 256 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 500709 501158 86 + . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_RTE-X 36414 36629 23 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LINE_L1-Tx1 57959 58648 93 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-X 354555 355328 184 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1672822 1673349 388 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_CR1 234004 235065 886 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold41534 WUBlastX DNA_hAT-Tip100 94162 95865 883 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_CR1 17581 17952 56 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold502 WUBlastX LTR_Gypsy 180434 180589 33 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_RTE-X 35863 36363 218 - . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_RTE-X 37943 38584 164 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LTR_Copia 139160 139363 167 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 79049 79435 215 - . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_CR1-L2 20588 20680 49 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_RTE-X 148685 150121 472 - . . . . . -1 -1 -1 . . . scaffold29078 WUBlastX LTR_Pao 2 850 953 + . . . . . -1 -1 -1 . . . scaffold98 WUBlastX LTR_Copia 309840 309890 25 - . . scaffold98 GLEAN mRNA 309260 309961 0.999991 - . ID=CGI_10012789; scaffold1778 WUBlastX LTR_Copia 41330 41422 40 + . . scaffold1778 GLEAN mRNA 34936 42863 0.220539 - . ID=CGI_10002479; scaffold1778 WUBlastX LTR_Copia 41451 41714 31 + . . scaffold1778 GLEAN mRNA 34936 42863 0.220539 - . ID=CGI_10002479; scaffold1778 WUBlastX LTR_Copia 44192 44284 40 + . . . . . -1 -1 -1 . . . scaffold1778 WUBlastX LTR_Copia 44313 44576 31 + . . . . . -1 -1 -1 . . . scaffold969 WUBlastX LTR_Pao 1077 1388 74 - . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LINE_CR1 17932 18102 40 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1717 WUBlastX LINE_CR1-L2 64609 65064 55 + . . scaffold1717 GLEAN mRNA 58116 75262 0.980383 + . ID=CGI_10013391; scaffold204 WUBlastX LINE_CR1 808485 808601 56 - . . . . . -1 -1 -1 . . . scaffold38804 WUBlastX LINE_CR1-L2 32015 32281 51 - . . scaffold38804 GLEAN mRNA 25991 34532 0.371949 - . ID=CGI_10002976; scaffold211 WUBlastX LINE_L2 242295 242618 30 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_CR1-L2 434233 434289 40 - . . . . . -1 -1 -1 . . . C26950 WUBlastX LINE_CR1-L2 2929 3015 25 + . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_CR1-L2 89611 89673 20 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold1307 WUBlastX LINE_L2 578158 578271 20 + . . . . . -1 -1 -1 . . . scaffold41730 WUBlastX LINE_L2 104186 104311 27 - . . scaffold41730 GLEAN mRNA 104165 107871 0.999496 - . ID=CGI_10005530; scaffold41730 WUBlastX LINE_L2 104283 104522 36 - . . scaffold41730 GLEAN mRNA 104165 107871 0.999496 - . ID=CGI_10005530; scaffold36904 WUBlastX LINE_CR1 28294 28404 21 - . . scaffold36904 GLEAN mRNA 10005 31731 0.991888 - . ID=CGI_10002168; scaffold38934 WUBlastX LTR_Ngaro 20073 20228 43 - . . scaffold38934 GLEAN mRNA 14643 26625 0.999796 + . ID=CGI_10003096; scaffold20 WUBlastX LTR_Ngaro 731000 731221 67 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 731759 731854 24 - . . scaffold20 GLEAN mRNA 731591 731773 0.999372 - . ID=CGI_10023595; scaffold810 WUBlastX LTR_Gypsy 65578 65823 20 + . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Ngaro 47806 47928 28 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 322416 322544 57 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LTR_Ngaro 94233 94442 53 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX DNA_Crypton 1305 1529 56 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX DNA_Crypton 350501 350848 64 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_L2 178986 179393 64 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_L2 71083 71250 51 - . . . . . -1 -1 -1 . . . scaffold752 WUBlastX LTR_ERV1 200626 201246 32 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_TcMar-Marin 564756 564896 78 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold1641 WUBlastX LTR_Gypsy 237422 237532 84 - . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LTR_Gypsy 14593 14769 87 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 43769 43924 56 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LTR_Gypsy 15499 15696 33 + . . scaffold517 GLEAN mRNA 15448 15819 0.999372 + . ID=CGI_10008976; scaffold1827 WUBlastX LTR_Gypsy 50890 51237 82 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_hAT-Ac 220052 220396 48 + . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold562 WUBlastX LTR_ERV1 200213 200563 49 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_IS4EU 17333 17518 80 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX DNA_TcMar-Tc1 111604 112053 32 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_Jockey 1622643 1622978 77 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LTR_Ngaro 252717 252941 56 + . . . . . -1 -1 -1 . . . scaffold47 WUBlastX DNA_TcMar-Tc2 24964 25263 76 - . . scaffold47 GLEAN mRNA 20135 33676 0.999415 - . ID=CGI_10002504; scaffold1179 WUBlastX DNA_P 872341 872580 65 + . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LINE_Penelope 36244 36453 59 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_Penelope 280645 280806 30 - . . . . . -1 -1 -1 . . . C32532 WUBlastX LINE_I-Nimb 648 1304 41 - . . C32532 GLEAN mRNA 384 737 0.987944 - . ID=CGI_10000908; scaffold992 WUBlastX LINE_I-Nimb 19755 20267 38 + . . scaffold992 GLEAN mRNA 15235 21038 0.967342 + . ID=CGI_10007502; scaffold1580 WUBlastX LINE_Penelope 17615 17740 32 + . . . . . -1 -1 -1 . . . scaffold1580 WUBlastX LINE_Penelope 17899 18084 36 + . . . . . -1 -1 -1 . . . scaffold31752 WUBlastX DNA_Kolobok 399 890 26 + . . . . . -1 -1 -1 . . . scaffold40952 WUBlastX DNA_Kolobok-Hyd 56413 56466 25 + . . scaffold40952 GLEAN mRNA 55267 57538 0.797605 + . ID=CGI_10004594; scaffold1307 WUBlastX LINE_L1-Tx1 789707 789952 57 + . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LINE_L1 51503 51757 30 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_Penelope 500753 501217 33 - . . scaffold1836 GLEAN mRNA 497009 501694 0.593384 - . ID=CGI_10026289; scaffold1589 WUBlastX DNA_PiggyBac 243002 243208 20 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 1100219 1100488 54 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 70473 70670 53 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 174490 174783 42 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_RTE-X 443996 444286 49 - . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LINE_RTE-X 217442 217591 40 - . . . . . -1 -1 -1 . . . scaffold1366 WUBlastX LINE_RTE-X 137450 137752 29 - . . scaffold1366 GLEAN mRNA 134919 140492 0.999572 - . ID=CGI_10012293; scaffold82 WUBlastX LINE_RTE-X 351535 351705 79 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 670597 670857 33 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold728 WUBlastX LINE_RTE-X 230501 230584 24 + . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX LTR_Gypsy 150005 150106 25 + . . scaffold43406 GLEAN mRNA 149831 150163 0.986655 + . ID=CGI_10010212; scaffold425 WUBlastX LINE_Proto2 465505 465858 30 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Maverick 130622 130849 25 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_PiggyBac 31618 31884 25 + . . . . . -1 -1 -1 . . . scaffold34888 WUBlastX DNA_Maverick 1885 2118 22 - . . . . . -1 -1 -1 . . . scaffold40208 WUBlastX LINE_RTE-X 82918 83280 46 + . . scaffold40208 GLEAN mRNA 72712 87059 0.842413 + . ID=CGI_10003956; scaffold39472 WUBlastX DNA_Sola 30217 30357 57 - . . . . . -1 -1 -1 . . . scaffold1519 WUBlastX DNA_Sola 30562 30813 72 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX DNA_Sola 305217 305312 26 - . . . . . -1 -1 -1 . . . scaffold34596 WUBlastX DNA_TcMar-Marin 16858 17148 72 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Sola 529020 529241 88 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Ngaro 788992 789138 84 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 359751 360482 52 + . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_L1-Tx1 9829 9927 64 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L1-Tx1 53438 53536 22 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L1-Tx1 53979 54101 26 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX DNA_TcMar-Tc1 195221 195622 29 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX DNA_TcMar-Tc1 37155 37388 51 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L1-Tx1 391407 391595 51 - . . . . . -1 -1 -1 . . . scaffold1748 WUBlastX LINE_L2 22677 22844 39 - . . scaffold1748 GLEAN mRNA 17962 26532 0.999389 + . ID=CGI_10002255; scaffold189 WUBlastX LINE_CR1 406833 406970 22 - . . . . . -1 -1 -1 . . . scaffold41316 WUBlastX LINE_L2 67451 67678 35 - . . . . . -1 -1 -1 . . . scaffold1690 WUBlastX LINE_CR1 2575 2826 39 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 459033 459326 55 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_CR1-L2 733675 734244 51 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_CR1 87214 87477 45 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold236 WUBlastX LINE_CR1-L2 361127 361510 62 + . . . . . -1 -1 -1 . . . scaffold36196 WUBlastX DNA_hAT-Tip100 5523 5825 60 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_hAT-Ac 371758 371952 20 + . . . . . -1 -1 -1 . . . scaffold38672 WUBlastX DNA_Merlin 57929 58348 80 + . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LTR_Gypsy 61161 61265 21 - . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LTR_Gypsy 460968 461555 54 - . . . . . -1 -1 -1 . . . scaffold36390 WUBlastX LTR_Gypsy 5437 5805 86 + . . scaffold36390 GLEAN mRNA 5206 5853 0.999984 + . ID=CGI_10001879; scaffold42198 WUBlastX LTR_Gypsy 91629 91733 65 + . . . . . -1 -1 -1 . . . scaffold32140 WUBlastX LTR_Gypsy-Cigr 1495 1803 80 + . . scaffold32140 GLEAN mRNA 1402 1839 0.840262 + . ID=CGI_10000846; scaffold269 WUBlastX LTR_Gypsy 436661 436825 42 - . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold1314 WUBlastX LINE_L2 140541 140702 26 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L2 142525 142686 26 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LTR_Ngaro 207774 207992 54 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_DIRS 250944 251501 42 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 929400 929534 86 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX DNA_Harbinger 748345 748596 83 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_hAT-Ac 590403 590738 72 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold596 WUBlastX RC_Helitron 195556 195774 95 - . . scaffold596 GLEAN mRNA 190755 207695 0.36732 - . ID=CGI_10009577; scaffold43818 WUBlastX LTR_Gypsy 321314 321757 74 + . . scaffold43818 GLEAN mRNA 318880 322672 0.37766 + . ID=CGI_10012777; scaffold1822 WUBlastX LTR_Gypsy 8815 8904 47 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-BovB 1068130 1068336 85 - . . scaffold1179 GLEAN mRNA 1063764 1075733 0.970354 + . ID=CGI_10027400; scaffold1533 WUBlastX LINE_RTE-BovB 341788 342015 66 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_L1 484110 484163 23 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L1-Tx1 89208 89600 73 + . . scaffold42674 GLEAN mRNA 75951 89776 0.488756 + . ID=CGI_10007441; scaffold1706 WUBlastX DNA_Kolobok 37817 38050 78 - . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold1611 WUBlastX DNA_Kolobok-Hyd 161454 161906 52 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_IS4EU 105701 106018 94 - . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold1736 WUBlastX DNA_IS4EU 641760 641963 83 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX DNA_IS4EU 49257 49463 40 - . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_L1 255095 255283 82 - . . scaffold378 GLEAN mRNA 247048 256613 0.78919 - . ID=CGI_10017643; scaffold1002 WUBlastX LINE_Penelope 78017 78364 48 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_NOF? 65015 65248 71 + . . scaffold191 GLEAN mRNA 59366 66619 0.998524 - . ID=CGI_10022409; scaffold40134 WUBlastX LINE_Penelope 39631 39792 45 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold647 WUBlastX LINE_Penelope 123075 123221 34 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 154146 154283 32 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Fot1 269509 269847 72 - . . . . . -1 -1 -1 . . . scaffold564 WUBlastX DNA_TcMar-Marin 372793 373068 51 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 236879 237097 70 - . . scaffold479 GLEAN mRNA 237067 237345 0.618241 - . ID=CGI_10015696; scaffold53 WUBlastX LINE_L2 1070580 1070774 26 - . . . . . -1 -1 -1 . . . scaffold39320 WUBlastX LINE_RTE-X 42850 43236 43 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1 85847 85954 28 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_CR1 454331 454921 35 + . . . . . -1 -1 -1 . . . scaffold1723 WUBlastX LINE_LOA 64081 64278 23 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_RTE-X 267954 268070 62 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 234213 234347 45 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_RTE-X 259719 259910 59 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LINE_RTE-X 600081 600374 72 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-BovB 183524 183703 89 - . . scaffold364 GLEAN mRNA 181317 195118 0.999994 + . ID=CGI_10022683; scaffold1376 WUBlastX LINE_RTE-X 35900 36262 27 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_RTE-X 207820 208056 69 - . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-X 241290 241436 29 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_RTE-X 315667 315798 54 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 23137 23445 47 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_RTE-X 5849 6019 53 + . . . . . -1 -1 -1 . . . scaffold38752 WUBlastX LINE_RTE-X 9001 9288 69 - . . scaffold38752 GLEAN mRNA 1672 15456 0.650722 - . ID=CGI_10002945; scaffold38752 WUBlastX LINE_RTE-X 9001 9288 69 - . . scaffold38752 GLEAN mRNA 5725 16402 0.993907 + . ID=CGI_10002946; scaffold619 WUBlastX LINE_RTE-X 659785 660039 64 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1040930 1041166 107 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LINE_RTE-X 290486 290758 58 + . . . . . -1 -1 -1 . . . scaffold1827 WUBlastX LINE_L1-Tx1 191072 191401 24 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_DIRS 71151 71603 53 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_TcMar-Tc1 475347 475460 26 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1-Tx1 142035 142265 64 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 8446 8721 56 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1-Tx1 166757 167074 22 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 1008724 1009107 20 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L1 196950 197393 81 + . . . . . -1 -1 -1 . . . scaffold37 WUBlastX DNA_hAT 149428 149790 90 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LTR_Gypsy 121036 121380 85 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Pao 360395 360778 46 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Pao 13838 14635 48 - . . scaffold1403 GLEAN mRNA 7932 14512 0.459466 - . ID=CGI_10020155; scaffold1403 WUBlastX LTR_Pao 13838 14635 48 - . . scaffold1403 GLEAN mRNA 14529 16909 0.998919 - . ID=CGI_10020156; scaffold35266 WUBlastX LTR_Copia 11224 12036 71 - . . scaffold35266 GLEAN mRNA 5619 15884 1 + . ID=CGI_10001434; scaffold520 WUBlastX LTR_Gypsy 61532 61915 24 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LTR_Pao 596797 597297 86 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LINE_CR1-L2 3979 4257 74 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_CR1 1245830 1246033 57 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L2 379412 379807 48 - . . scaffold57 GLEAN mRNA 361110 382565 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_L2 379412 379807 48 - . . scaffold57 GLEAN mRNA 361168 396087 0.322076 - . ID=CGI_10020553; scaffold39014 WUBlastX LINE_CR1 52598 53065 74 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L2 416990 417778 70 + . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LINE_L2 84196 84282 62 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_CR1 112343 112408 20 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 458906 459013 23 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_CR1-L2 324033 324224 55 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Gypsy 59388 59513 54 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold714 WUBlastX LTR_DIRS 114167 114304 73 + . . . . . -1 -1 -1 . . . scaffold865 WUBlastX LTR_Ngaro 18910 19071 87 - . . scaffold865 GLEAN mRNA 7384 21120 0.465325 - . ID=CGI_10002639; scaffold1697 WUBlastX LTR_Ngaro 127833 127973 89 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_DIRS 148551 148712 37 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_DIRS 148939 149262 75 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_DIRS 305593 305913 29 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold619 WUBlastX LTR_Gypsy 1072833 1072991 23 - . . scaffold619 GLEAN mRNA 1070584 1074375 0.856709 - . ID=CGI_10025801; scaffold38736 WUBlastX LTR_Gypsy 18 905 83 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Harbinger 518943 519356 30 + . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_Harbinger 33883 34017 32 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold1532 WUBlastX DNA_Harbinger 1540498 1540947 62 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_R2-Hero 909264 909503 61 + . . scaffold121 GLEAN mRNA 904036 921193 0.999676 - . ID=CGI_10025685; scaffold148 WUBlastX DNA_Harbinger 75950 76078 21 + . . . . . -1 -1 -1 . . . scaffold716 WUBlastX DNA_Kolobok-IS4 55046 55285 78 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_ERV1 453309 453350 21 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 1104501 1104626 38 + . . . . . -1 -1 -1 . . . C26320 WUBlastX LTR_ERV1 511 696 34 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Marin 186279 186392 50 - . . . . . -1 -1 -1 . . . scaffold1419 WUBlastX DNA_TcMar-Marin 80925 81260 83 + . . scaffold1419 GLEAN mRNA 15962 93471 0.812498 - . ID=CGI_10005452; scaffold290 WUBlastX DNA_TcMar-Marin 445166 445423 37 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX DNA_TcMar-Marin 445678 445863 49 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_Penelope 281786 282316 58 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_Penelope 46693 46938 60 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_NOF 318535 318675 46 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_L1-Tx1 379966 380031 21 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; scaffold1160 WUBlastX LINE_L1 2135 2203 23 - . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LINE_L1 145846 146055 29 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 472002 472355 39 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-X 218994 219161 31 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_RTE-X 131474 131596 37 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 160567 160752 93 - . . scaffold43726 GLEAN mRNA 145496 185415 0.997652 - . ID=CGI_10012023; scaffold1899 WUBlastX LINE_RTE-X 219000 219095 41 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-BovB 503297 503725 39 + . . scaffold885 GLEAN mRNA 501162 507823 1 + . ID=CGI_10025210; scaffold1403 WUBlastX LINE_RTE-BovB 374434 374556 70 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX DNA_Maverick 12732 13112 64 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold1686 WUBlastX DNA_Sola 13236 13463 41 - . . scaffold1686 GLEAN mRNA 12792 13442 0.862137 - . ID=CGI_10005073; scaffold1686 WUBlastX DNA_Sola 13694 13810 46 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX DNA_Sola 186408 186698 48 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 130190 130702 33 - . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LINE_L1-Tx1 146415 146507 32 - . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LINE_L1-Tx1 146618 146677 36 - . . . . . -1 -1 -1 . . . scaffold1230 WUBlastX DNA_TcMar-Tc1 94045 94263 41 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-Tc1 866055 866228 22 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc1 287892 288035 30 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_TcMar-Tc1 360288 360491 78 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1-Tx1 736842 736898 29 + . . . . . -1 -1 -1 . . . C32472 WUBlastX LTR_Gypsy-Cigr 559 720 90 + . . . . . -1 -1 -1 . . . scaffold42570 WUBlastX LINE_CR1 16325 16465 106 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; C10291 WUBlastX LTR_Copia 2 160 85 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_CR1-L2 81829 82011 29 + . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1-L2 49623 49940 80 + . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1-L2 50210 50308 28 + . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_CR1-L2 72248 72565 86 + . . scaffold1858 GLEAN mRNA 68859 77379 0.839673 + . ID=CGI_10010443; scaffold190 WUBlastX LINE_CR1-L2 114544 114672 44 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_CR1-L2 518001 518282 25 - . . . . . -1 -1 -1 . . . scaffold42046 WUBlastX LINE_RTE-BovB 57816 58520 61 + . . scaffold42046 GLEAN mRNA 51319 68145 1 + . ID=CGI_10006002; scaffold640 WUBlastX LTR_Pao 155127 155297 123 - . . . . . -1 -1 -1 . . . scaffold1010 WUBlastX DNA_hAT-Tip100 42624 42968 86 - . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX DNA_Academ 187431 187748 75 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_En-Spm 29826 30113 107 - . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold911 WUBlastX DNA_En-Spm 168866 169216 64 + . . scaffold911 GLEAN mRNA 159613 170351 0.499121 + . ID=CGI_10012141; scaffold72 WUBlastX LTR_Ngaro 298966 299241 38 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 247288 247494 65 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Ngaro 908309 908572 79 + . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LTR_Gypsy 1529 1618 34 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_Harbinger 1279856 1280041 116 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold796 WUBlastX LTR_Gypsy 63018 63044 25 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 11960 11998 22 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_Kolobok 239811 240002 85 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_L1-Tx1 670083 670604 39 + . . . . . -1 -1 -1 . . . C32318 WUBlastX LINE_L1 7548 8060 56 - . . C32318 GLEAN mRNA 2480 10983 0.999998 + . ID=CGI_10000883; C29788 WUBlastX LINE_L1 5714 6286 88 + . . C29788 GLEAN mRNA 5498 6724 0.72793 + . ID=CGI_10000560; scaffold1550 WUBlastX LINE_L1 4890 4931 23 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Ngaro 2102 2188 28 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Ngaro 2253 2477 80 + . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 29907 30098 83 - . . . . . -1 -1 -1 . . . C32974 WUBlastX LINE_Proto2 4935 5351 85 - . . . . . -1 -1 -1 . . . scaffold50 WUBlastX LINE_RTE-BovB 91289 91372 21 + . . . . . -1 -1 -1 . . . scaffold50 WUBlastX LINE_RTE-BovB 91378 91791 60 + . . . . . -1 -1 -1 . . . scaffold41380 WUBlastX LINE_RTE-BovB 66648 66800 39 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold33064 WUBlastX LINE_RTE-X 1738 1959 37 - . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX LINE_RTE-X 112669 113073 27 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold1813 WUBlastX LINE_RTE-X 114141 114197 20 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX DNA_Sola 305308 305460 66 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_RTE-X 272931 273212 51 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LTR_DIRS 344577 344789 108 + . . scaffold1037 GLEAN mRNA 341684 347440 0.722718 + . ID=CGI_10017464; scaffold42770 WUBlastX LINE_DRE 88011 88391 46 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_TcMar-Tc1 392153 392302 54 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold35894 WUBlastX LINE_L1-Tx1 25934 26170 104 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy 38597 38770 49 + . . . . . -1 -1 -1 . . . scaffold1089 WUBlastX LINE_Penelope 64512 64697 108 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 108127 108387 146 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy-Cigr 132527 132640 44 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold1459 WUBlastX LTR_Copia 109760 109852 29 + . . scaffold1459 GLEAN mRNA 92847 117435 0.999674 - . ID=CGI_10010107; scaffold38980 WUBlastX LTR_Copia 63460 64047 121 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LINE_CR1-L2 359125 359388 95 + . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_CR1 262647 263030 96 - . . scaffold1800 GLEAN mRNA 251153 263258 0.999949 - . ID=CGI_10016404; scaffold43146 WUBlastX LINE_CR1 16011 16391 85 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L2 365654 366382 54 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Ngaro 160795 160890 23 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LTR_Gypsy 98116 98178 23 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 428896 429039 26 - . . scaffold257 GLEAN mRNA 408517 430332 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_Gypsy 428896 429039 26 - . . scaffold257 GLEAN mRNA 415447 429822 0.479397 + . ID=CGI_10027911; scaffold288 WUBlastX LTR_Gypsy 597625 597768 26 - . . scaffold288 GLEAN mRNA 597379 599061 0.999238 - . ID=CGI_10020682; scaffold980 WUBlastX LTR_Gypsy 572731 572874 26 + . . scaffold980 GLEAN mRNA 571438 573129 0.991145 + . ID=CGI_10019247; scaffold42198 WUBlastX LTR_Gypsy 91593 91724 37 + . . . . . -1 -1 -1 . . . scaffold852 WUBlastX DNA_IS4EU 51841 51924 27 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold38854 WUBlastX DNA_Harbinger 21360 21566 29 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LINE_CR1 30241 30534 60 - . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_NOF 31881 32285 49 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 1436257 1436442 105 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_Penelope 172670 172933 85 - . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Penelope 11491 12012 91 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX LINE_L1 141128 141259 42 + . . scaffold802 GLEAN mRNA 137512 196873 0.499283 - . ID=CGI_10015727; scaffold122 WUBlastX DNA_Kolobok 253462 253647 32 + . . . . . -1 -1 -1 . . . scaffold122 WUBlastX DNA_Kolobok 253906 254034 31 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1-Tx1 131310 131471 82 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1-Tx1 131483 131539 28 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LINE_L1 71969 72565 83 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold1322 WUBlastX LINE_RTE-BovB 379652 379786 44 - . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_RTE-BovB 352400 352567 117 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_RTE-X 27877 28092 96 - . . scaffold1794 GLEAN mRNA 20538 42560 0.51959 + . ID=CGI_10019565; scaffold43940 WUBlastX LINE_RTE-X 266906 267121 96 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_RTE-X 177432 177695 95 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LINE_RTE-X 44699 44926 35 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 664496 664897 91 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_RTE-X 593277 593648 47 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_RTE-X 593627 593773 39 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 152623 152670 32 + . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LINE_RTE-X 110302 110475 28 + . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold204 WUBlastX LINE_RTE-X 163677 163880 85 + . . . . . -1 -1 -1 . . . scaffold666 WUBlastX LINE_RTE-X 15598 15882 72 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_RTE-BovB 151645 151803 55 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_RTE-BovB 151806 152000 57 + . . . . . -1 -1 -1 . . . scaffold38498 WUBlastX LINE_RTE-X 43925 44191 95 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_RTE-X 193442 193636 104 + . . scaffold1327 GLEAN mRNA 180097 196030 0.600145 + . ID=CGI_10014341; scaffold1397 WUBlastX LTR_Gypsy 35556 36191 72 - . . . . . -1 -1 -1 . . . scaffold37252 WUBlastX LINE_L1-Tx1 17933 18175 80 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 664367 664417 21 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_CR1 1245705 1246238 47 + . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L2 114500 114604 22 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold43358 WUBlastX LINE_CR1-L2 40064 40285 47 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_L2-Hydra 90381 90683 60 - . . . . . -1 -1 -1 . . . scaffold635 WUBlastX LINE_CR1-L2 88185 88457 65 + . . . . . -1 -1 -1 . . . C22302 WUBlastX LINE_CR1-L2 63 335 65 + . . . . . -1 -1 -1 . . . scaffold746 WUBlastX LINE_L2 1281 1652 73 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Pao 95987 97261 85 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_TcMar-Ant1 274290 274544 31 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 638912 639115 105 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold998 WUBlastX LTR_Gypsy 145302 145862 63 - . . . . . -1 -1 -1 . . . scaffold998 WUBlastX LTR_Gypsy 145850 146155 27 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Harbinger 5175 5396 102 + . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX RC_Helitron 3190 3600 127 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Kolobok-IS4 365091 365366 101 - . . scaffold1077 GLEAN mRNA 344081 378528 0.82291 + . ID=CGI_10017829; scaffold1322 WUBlastX DNA_Kolobok-IS4 247217 247417 33 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX DNA_IS4EU 412972 413070 25 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX DNA_IS4EU 414763 414924 24 - . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LTR_Gypsy 106692 106802 24 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_TcMar-Tc1 713519 713692 70 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX DNA_TcMar-Tc2 64963 65778 109 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1 117818 117898 25 - . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX DNA_P 20884 21174 118 + . . . . . -1 -1 -1 . . . C16120 WUBlastX LTR_Gypsy 2 184 138 + . . . . . -1 -1 -1 . . . scaffold31090 WUBlastX DNA_TcMar-Fot1 5552 5800 46 + . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LINE_RTE-BovB 259954 260148 76 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_RTE-BovB 245014 245262 115 + . . scaffold363 GLEAN mRNA 238043 248043 0.648316 - . ID=CGI_10019299; scaffold38898 WUBlastX DNA_Maverick 24296 24448 63 + . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 820 933 26 - . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 1174 1287 80 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_PiggyBac 243940 244302 91 - . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LINE_RTE-BovB 1019 1213 51 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Ngaro 184101 184316 123 - . . . . . -1 -1 -1 . . . scaffold37668 WUBlastX LTR_Ngaro 45080 45571 40 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 517866 518063 112 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_TcMar-Tc1 393919 394272 107 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold43676 WUBlastX DNA_TcMar-Tc1 219234 219557 122 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Pao 320231 320659 64 - . . scaffold160 GLEAN mRNA 319475 320748 0.628364 - . ID=CGI_10020588; scaffold43932 WUBlastX LINE_L2 78105 78320 22 + . . scaffold43932 GLEAN mRNA 77692 84984 0.999991 + . ID=CGI_10014110; scaffold43932 WUBlastX LINE_L2 78335 78634 68 + . . scaffold43932 GLEAN mRNA 77692 84984 0.999991 + . ID=CGI_10014110; scaffold204 WUBlastX LINE_L2 372770 373306 91 + . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LTR_Gypsy 26821 26952 31 + . . . . . -1 -1 -1 . . . scaffold450 WUBlastX LTR_Gypsy 79786 80043 141 - . . scaffold450 GLEAN mRNA 66067 80656 0.505252 - . ID=CGI_10010319; scaffold1439 WUBlastX LTR_Ngaro 78126 78560 91 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 459284 459550 119 - . . . . . -1 -1 -1 . . . scaffold41356 WUBlastX LTR_Ngaro 12470 12760 110 - . . scaffold41356 GLEAN mRNA 5844 20035 0.990026 - . ID=CGI_10004993; scaffold1900 WUBlastX LTR_Ngaro 380302 380457 30 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX DNA_TcMar-Tc1 194920 195093 70 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 37345 37974 109 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 45510 45857 91 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX DNA_IS4EU 226436 227023 72 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold1358 WUBlastX LINE_R2-Hero 238968 239432 132 - . . . . . -1 -1 -1 . . . scaffold194 WUBlastX LINE_R2-Hero 137228 137554 75 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Harbinger 220941 221210 118 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX DNA_TcMar-Fot1 56151 56615 77 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 54250 55023 69 - . . . . . -1 -1 -1 . . . scaffold34016 WUBlastX LINE_Penelope 3294 3695 117 + . . scaffold34016 GLEAN mRNA 449 13407 0.445355 - . ID=CGI_10001181; scaffold440 WUBlastX LINE_L1 41673 42116 81 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-BovB 177195 177659 97 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-X 244520 244822 56 + . . . . . -1 -1 -1 . . . scaffold1644 WUBlastX LINE_RTE-X 47943 47981 25 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 315937 316275 79 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-X 151894 152067 120 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_RTE-X 159506 159775 100 - . . . . . -1 -1 -1 . . . scaffold493 WUBlastX LINE_RTE-X 74384 74767 67 - . . scaffold493 GLEAN mRNA 57003 100421 0.916759 + . ID=CGI_10007247; scaffold198 WUBlastX LINE_RTE-X 364568 364876 65 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Gypsy 157654 158406 94 + . . . . . -1 -1 -1 . . . scaffold1807 WUBlastX LTR_DIRS 46900 47235 97 + . . scaffold1807 GLEAN mRNA 37010 47983 0.990974 - . ID=CGI_10004644; scaffold43358 WUBlastX LTR_DIRS 34632 35084 39 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_L1-Tx1 32505 32834 77 - . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1237 WUBlastX LINE_L1-Tx1 204858 205070 98 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold39198 WUBlastX LINE_L1-Tx1 27335 27589 84 - . . . . . -1 -1 -1 . . . scaffold39198 WUBlastX LINE_L1-Tx1 35099 35353 84 + . . . . . -1 -1 -1 . . . scaffold41762 WUBlastX LINE_L1-Tx1 49760 50056 48 + . . . . . -1 -1 -1 . . . scaffold35432 WUBlastX LINE_L1-Tx1 34 186 38 - . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L1-Tx1 36670 37017 103 + . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX LINE_L1-Tx1 112851 113072 94 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold42408 WUBlastX LINE_L1-Tx1 113436 113525 31 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold1865 WUBlastX LINE_L2 355701 356030 56 - . . scaffold1865 GLEAN mRNA 344097 356570 0.999624 + . ID=CGI_10013550; scaffold502 WUBlastX LINE_CR1 625286 625795 124 - . . scaffold502 GLEAN mRNA 606784 627664 0.999597 + . ID=CGI_10024338; scaffold39858 WUBlastX LTR_Pao 73353 73451 21 - . . scaffold39858 GLEAN mRNA 65424 78749 0.99005 + . ID=CGI_10003660; scaffold150 WUBlastX LINE_L1 67852 68232 47 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_DIRS 52853 53056 30 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 2636 2698 21 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LTR_Pao 168714 169016 85 + . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold58 WUBlastX LTR_Pao 633206 633430 86 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Gypsy-Cigr 110303 110830 150 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LTR_Gypsy-Cigr 322404 322976 117 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LINE_L2 45236 45625 118 - . . scaffold488 GLEAN mRNA 23091 53480 0.998314 - . ID=CGI_10005407; scaffold728 WUBlastX LTR_Ngaro 424205 424645 77 - . . . . . -1 -1 -1 . . . scaffold34266 WUBlastX LTR_DIRS 9687 9980 107 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX DNA_hAT-hATw 156952 157149 36 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX DNA_Kolobok-IS4 101105 101425 82 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX DNA_IS4EU 44969 45058 30 - . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 45151 45198 21 - . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold191 WUBlastX DNA_Kolobok 204658 204876 21 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L1-Tx1 1041935 1042108 46 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold1834 WUBlastX DNA_Kolobok-Hyd 474117 474902 51 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX DNA_TcMar-Marin 357796 358182 103 - . . . . . -1 -1 -1 . . . scaffold232 WUBlastX DNA_Maverick 101805 102419 121 - . . . . . -1 -1 -1 . . . scaffold41824 WUBlastX LINE_RTE-X 58909 59220 88 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 70540 70647 43 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-X 229657 229881 122 - . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX LTR_DIRS 737 982 20 + . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX LTR_DIRS 937 1458 53 + . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX LTR_DIRS 1692 1856 32 + . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_Gypsy 132093 132161 24 - . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 26070 26207 37 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold406 WUBlastX LTR_Gypsy-Cigr 574468 575061 78 - . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX DNA_Zator 63934 64416 113 - . . scaffold1454 GLEAN mRNA 63589 73088 0.838276 - . ID=CGI_10004314; scaffold41636 WUBlastX LTR_Pao 111044 111268 29 + . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LTR_Pao 215252 215758 28 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold332 WUBlastX LINE_L1 149548 149655 43 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_TcMar-Tc1 261216 261521 66 - . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold40366 WUBlastX LTR_Pao 77313 77408 58 - . . . . . -1 -1 -1 . . . C27092 WUBlastX LINE_CR1-L2 1788 2171 122 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_CR1-L2 578176 578346 50 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Ngaro 475820 475996 65 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 741007 741270 23 + . . . . . -1 -1 -1 . . . scaffold33934 WUBlastX LTR_Gypsy 10121 10864 116 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LTR_Gypsy 153662 154309 136 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold39122 WUBlastX LTR_Gypsy 52959 53630 131 - . . . . . -1 -1 -1 . . . C30872 WUBlastX LTR_Gypsy 1095 1604 146 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Gypsy 24048 24665 145 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold343 WUBlastX DNA_hAT-Tip100 560731 560913 49 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_R2-Hero 58338 58643 120 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_R2-Hero 59413 59721 77 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Marin 245813 246070 56 + . . . . . -1 -1 -1 . . . scaffold409 WUBlastX DNA_TcMar-Tc1 41952 42221 114 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1 42309 42425 28 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_MuDR 19617 19778 67 - . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L1-Tx1 40074 40571 33 + . . . . . -1 -1 -1 . . . scaffold401 WUBlastX LINE_RTE-BovB 155825 156112 77 - . . scaffold401 GLEAN mRNA 151217 157765 0.728444 + . ID=CGI_10006994; scaffold248 WUBlastX LINE_RTE-BovB 112231 112557 24 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-BovB 42764 42976 119 + . . . . . -1 -1 -1 . . . scaffold43786 WUBlastX DNA_TcMar-Tc1 178345 178440 47 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L1-Tx1 1197247 1197831 92 - . . . . . -1 -1 -1 . . . scaffold260 WUBlastX LINE_L2 33291 33872 91 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 525513 525887 130 - . . . . . -1 -1 -1 . . . scaffold331 WUBlastX DNA_En-Spm 38475 38552 26 - . . . . . -1 -1 -1 . . . scaffold41034 WUBlastX LTR_DIRS 58402 58653 79 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold801 WUBlastX LTR_Ngaro 571620 572129 77 - . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_L2 81570 82166 80 + . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold747 WUBlastX LTR_Gypsy 399536 399799 66 + . . . . . -1 -1 -1 . . . scaffold37740 WUBlastX DNA_Harbinger 41528 41806 126 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_hAT-Blackja 1075726 1075941 93 - . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_hAT-Blackja 1076466 1076669 28 - . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold237 WUBlastX DNA_Harbinger 467805 468080 159 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 2258 2467 75 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Kolobok 142285 142425 84 + . . scaffold425 GLEAN mRNA 142243 142446 1 + . ID=CGI_10025978; scaffold107 WUBlastX LINE_L1-Tx1 171363 171719 126 - . . . . . -1 -1 -1 . . . scaffold186 WUBlastX DNA_Merlin 277101 277421 81 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_Penelope 68873 69196 72 - . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LINE_Penelope 56281 57180 88 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_TcMar-Tc1 526722 527252 138 - . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LINE_RTE-X 34796 35116 25 - . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LINE_RTE-BovB 105012 105335 143 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_RTE-X 4340 4414 41 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_RTE-X 148291 148890 35 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold148 WUBlastX LINE_CR1-L2 32986 34284 825 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX LINE_CR1 386960 387151 70 + . . scaffold914 GLEAN mRNA 383322 392651 0.969071 - . ID=CGI_10018890; scaffold513 WUBlastX LTR_Pao 53544 54032 468 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 184844 185068 58 + . . . . . -1 -1 -1 . . . scaffold1290 WUBlastX LTR_Gypsy 9779 10141 47 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy-Cigr 155435 155674 60 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 242106 242264 53 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 353044 353370 68 + . . . . . -1 -1 -1 . . . scaffold98 WUBlastX LTR_Gypsy 310081 311232 474 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Pao 52685 52909 93 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LTR_Pao 177777 179060 465 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 48354 48980 52 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 283359 284297 585 + . . scaffold332 GLEAN mRNA 282632 290184 0.40014 - . ID=CGI_10020880; scaffold332 WUBlastX LINE_RTE-X 284345 285211 344 + . . scaffold332 GLEAN mRNA 282632 290184 0.40014 - . ID=CGI_10020880; scaffold335 WUBlastX LTR_Pao 281085 281288 110 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_Pao 281549 281605 55 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_Pao 282153 282203 46 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_TcMar-ISRm1 413518 414441 131 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L2 15316 15849 148 + . . . . . -1 -1 -1 . . . scaffold309 WUBlastX DNA_hAT-Tip100 139709 139846 40 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_R2-Hero 26436 26993 112 - . . scaffold1715 GLEAN mRNA 4936 29728 0.469378 + . ID=CGI_10019659; scaffold1188 WUBlastX LINE_R2-Hero 935788 936360 166 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Kolobok-Hyd 81487 81675 25 - . . . . . -1 -1 -1 . . . scaffold33842 WUBlastX LINE_L1 9007 9186 56 - . . . . . -1 -1 -1 . . . C27456 WUBlastX LINE_RTE-X 3909 4190 30 - . . . . . -1 -1 -1 . . . C27456 WUBlastX LINE_RTE-X 4265 4693 65 - . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LINE_RTE-BovB 121387 121569 62 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_PiggyBac 590083 590187 24 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy 198160 198327 68 + . . . . . -1 -1 -1 . . . scaffold487 WUBlastX DNA_TcMar-Tc1 55739 56125 113 - . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_RTE-BovB 589694 590233 352 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 29982 30470 123 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 17829 18224 65 + . . . . . -1 -1 -1 . . . scaffold1696 WUBlastX LTR_Pao 2524 2757 27 + . . scaffold1696 GLEAN mRNA 261 23562 0.414457 - . ID=CGI_10003674; scaffold1696 WUBlastX LTR_Pao 3188 3280 74 + . . scaffold1696 GLEAN mRNA 261 23562 0.414457 - . ID=CGI_10003674; scaffold1035 WUBlastX LTR_Gypsy 127209 127613 40 - . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy-Cigr 71501 72514 59 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold43842 WUBlastX LTR_Ngaro 341222 342691 975 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 5050 5448 36 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1 800650 801825 529 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1 803276 803473 41 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Pao 187124 187978 840 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Pao 187981 188295 338 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 599673 600248 501 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 239811 240269 245 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_TcMar-Ant1 413551 414330 157 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LTR_Pao 179612 180247 175 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_CR1 89129 89314 42 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LTR_Gypsy 138882 139607 178 - . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 133246 133965 176 + . . scaffold1217 GLEAN mRNA 132340 134181 0.739794 + . ID=CGI_10009995; scaffold457 WUBlastX LTR_Gypsy 259566 260540 135 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 300817 300912 34 - . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LTR_DIRS 13060 13287 61 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Harbinger 114460 114852 104 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Harbinger 115456 115506 39 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 137890 139008 128 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold39972 WUBlastX LTR_Gypsy 53422 53775 67 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold1054 WUBlastX DNA_Kolobok 333557 333709 77 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_Kolobok 103803 103991 95 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_L1 284 664 151 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1 175187 175522 52 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L1 40865 41185 44 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold203 WUBlastX DNA_TcMar-Marin 112486 112896 68 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold36022 WUBlastX LINE_RTE-X 15941 16483 94 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 57646 57825 42 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_RTE-X 476386 476916 113 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 308787 308972 75 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LTR_DIRS 194167 194289 25 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX DNA_TcMar-Tc1 10959 11201 28 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX RC_Helitron 223571 223741 21 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LINE_RTE-X 73585 74592 471 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LINE_RTE-X 74606 75571 480 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 276820 277218 39 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Pao 1228461 1229318 696 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Pao 1229998 1230309 223 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Pao 1231307 1231468 61 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 694678 698667 1129 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 29362 29685 51 - . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 29959 30150 120 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_CR1-L2 217513 217590 25 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold1213 WUBlastX LTR_DIRS 910555 910845 169 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 996305 996445 44 + . . . . . -1 -1 -1 . . . scaffold1771 WUBlastX LTR_Gypsy 94132 94944 139 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold280 WUBlastX DNA_hAT-Ac 887463 887735 132 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX DNA_hAT-Ac 887945 888004 24 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX DNA_IS4EU 1009588 1010418 137 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Kolobok 98998 99210 91 + . . . . . -1 -1 -1 . . . scaffold36482 WUBlastX LINE_Penelope 34529 34666 58 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1 100312 100485 43 - . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1 14165 14779 72 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 802731 802928 93 - . . scaffold1009 GLEAN mRNA 796284 807727 0.387799 - . ID=CGI_10028763; scaffold1009 WUBlastX LINE_RTE-BovB 802731 802928 93 - . . scaffold1009 GLEAN mRNA 802465 805561 0.994697 + . ID=CGI_10028764; scaffold1009 WUBlastX LINE_RTE-BovB 803136 803255 81 - . . scaffold1009 GLEAN mRNA 796284 807727 0.387799 - . ID=CGI_10028763; scaffold1009 WUBlastX LINE_RTE-BovB 803136 803255 81 - . . scaffold1009 GLEAN mRNA 802465 805561 0.994697 + . ID=CGI_10028764; scaffold713 WUBlastX LINE_RTE-X 255612 256190 86 - . . . . . -1 -1 -1 . . . scaffold1296 WUBlastX LTR_Copia 360 572 146 + . . . . . -1 -1 -1 . . . scaffold1296 WUBlastX LTR_Copia 847 1779 1081 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy-Cigr 11179 11985 550 - . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LINE_RTE-X 1514 3049 702 + . . . . . -1 -1 -1 . . . C28218 WUBlastX LTR_Pao 3906 5288 1273 - . . C28218 GLEAN mRNA 3900 4367 0.999999 - . ID=CGI_10000410; scaffold1445 WUBlastX LINE_CR1 170350 171753 683 + . . . . . -1 -1 -1 . . . scaffold1103 WUBlastX LINE_L2 13836 14642 595 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold1103 WUBlastX LINE_L2 14639 15520 457 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold36664 WUBlastX LTR_Gypsy 27711 27887 45 + . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX RC_Helitron 116840 117118 60 - . . . . . -1 -1 -1 . . . scaffold493 WUBlastX LINE_L2 102092 102520 92 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1-L2 650808 651107 98 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_Academ 470703 470810 40 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 1058089 1058757 143 + . . scaffold1423 GLEAN mRNA 1057538 1060967 0.980388 + . ID=CGI_10025454; scaffold32 WUBlastX DNA_IS4EU 17101 18072 64 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 428747 429148 112 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1 335217 335294 22 + . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_L1-Tx1 194506 194718 70 + . . scaffold556 GLEAN mRNA 194019 202410 0.999351 - . ID=CGI_10016802; scaffold40680 WUBlastX LTR_Ngaro 60902 61264 107 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Ngaro 61393 61791 32 - . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_L2 18893 19441 155 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Maverick 385605 385778 82 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_RTE-X 166612 167214 66 + . . . . . -1 -1 -1 . . . scaffold39472 WUBlastX LTR_DIRS 39921 40076 32 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 40113 40397 154 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold1321 WUBlastX LTR_DIRS 134718 135176 275 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_DIRS 135176 135814 209 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_DIRS 135805 136101 197 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_DIRS 136083 136469 293 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_DIRS 136430 136555 30 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_DIRS 136803 137267 205 - . . scaffold1321 GLEAN mRNA 136608 137201 1 - . ID=CGI_10010662; scaffold794 WUBlastX DNA_En-Spm 328825 330708 1287 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 270802 271191 122 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold1253 WUBlastX RC_Helitron 67075 67911 57 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX DNA_Academ 242430 243083 85 - . . scaffold1210 GLEAN mRNA 242968 243372 0.866433 - . ID=CGI_10014607; scaffold1189 WUBlastX LINE_L1 634809 635063 53 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold1737 WUBlastX LINE_CR1-L2 428332 428448 42 + . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LTR_DIRS 4565 4726 104 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Ngaro 263447 263806 115 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Ngaro 506974 507438 113 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX DNA_Kolobok-IS4 283696 283977 61 + . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX DNA_Kolobok-IS4 283965 284381 28 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 436538 437068 89 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LINE_Penelope 102286 102585 82 - . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold1862 WUBlastX LINE_L1 194597 195139 97 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold748 WUBlastX LINE_RTE-X 290588 290917 50 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 9964 10209 60 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-X 945013 945729 116 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 43121 43324 179 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX DNA_TcMar-Tc2 58582 59598 196 - . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold143 WUBlastX LINE_L1-Tx1 186962 187366 106 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1750 WUBlastX LTR_Pao 634133 634423 32 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1484 WUBlastX LINE_CR1-L2 290714 290962 38 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_CR1-L2 119434 119997 182 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_DIRS 52853 52999 43 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_DIRS 151031 151174 59 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_DIRS 151604 152209 65 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Gypsy 12259 12447 109 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 381458 381640 45 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX DNA_Harbinger 338926 339120 33 - . . . . . -1 -1 -1 . . . scaffold42662 WUBlastX LTR_Gypsy 181018 181539 209 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 317651 318205 213 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_I 76504 76644 22 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_L2 32487 33242 141 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold35966 WUBlastX LINE_L1 23160 23369 29 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1-Tx1 209077 209337 71 - . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1-Tx1 37859 38557 71 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 538053 538259 42 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 538280 538606 156 + . . . . . -1 -1 -1 . . . scaffold1460 WUBlastX LINE_RTE-X 4377 4451 53 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Tc1 251076 251294 94 - . . scaffold1213 GLEAN mRNA 226891 261241 0.989794 + . ID=CGI_10027441; scaffold1093 WUBlastX DNA_TcMar-Tc1 156309 156512 94 + . . . . . -1 -1 -1 . . . scaffold868 WUBlastX DNA_TcMar-Tc1 138834 139157 38 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L2 395268 395543 115 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L2 395806 397344 1019 + . . scaffold1788 GLEAN mRNA 396613 397392 0.999999 + . ID=CGI_10019927; scaffold1788 WUBlastX LINE_L2 397986 398429 135 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Pao 21428 21979 36 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Pao 22364 24064 704 + . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LTR_Gypsy-Cigr 365428 365967 158 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_CR1-L2 46883 47413 107 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 496061 496702 168 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_Crypton 243345 243824 173 - . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold186 WUBlastX LTR_Gypsy 9499 9693 141 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 106203 106568 201 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_Gypsy 16010 16171 95 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold461 WUBlastX LTR_Gypsy 507452 508414 171 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold43844 WUBlastX LTR_Gypsy 324835 325146 27 - . . . . . -1 -1 -1 . . . C34256 WUBlastX DNA_Kolobok 11949 12065 26 + . . . . . -1 -1 -1 . . . C34256 WUBlastX DNA_Kolobok 9999 10334 118 + . . C34256 GLEAN mRNA 8451 10352 0.999999 + . ID=CGI_10001257; scaffold86 WUBlastX DNA_Kolobok 149346 149534 51 + . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 149896 150054 77 + . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold142 WUBlastX DNA_TcMar-Marin 96302 96592 99 + . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX DNA_Harbinger 60302 60460 45 + . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX DNA_Harbinger 60800 60865 28 + . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX DNA_Harbinger 60871 61176 57 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 474059 474670 217 - . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX LINE_L1-Tx1 237720 238460 157 - . . . . . -1 -1 -1 . . . scaffold41852 WUBlastX LINE_L1 1761 1862 31 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_RTE-X 486672 487004 114 - . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LINE_RTE-X 30594 30848 41 - . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LINE_RTE-X 30974 31231 156 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_PiggyBac 611723 612091 125 + . . . . . -1 -1 -1 . . . C33510 WUBlastX LINE_RTE-X 5987 6265 66 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L1-Tx1 1215906 1216151 74 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy-Cigr 164464 165207 464 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 5 1615 1069 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 1611 2363 550 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Pao 258449 260272 1642 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LINE_L1-Tx1 57397 60831 1130 + . . scaffold43920 GLEAN mRNA 44281 62633 0.726327 + . ID=CGI_10013987; scaffold268 WUBlastX LINE_L1-Tx1 61736 65170 1130 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_CR1 166963 167013 25 + . . scaffold689 GLEAN mRNA 162763 181677 0.999 - . ID=CGI_10014826; scaffold737 WUBlastX LINE_L2 77908 78291 57 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX DNA_Crypton 147136 147327 76 + . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LTR_Ngaro 28192 28584 108 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LTR_Ngaro 111478 111741 26 - . . . . . -1 -1 -1 . . . scaffold1452 WUBlastX DNA_hAT-Ac 15092 16021 173 + . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX DNA_IS4EU 34871 35101 22 + . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold40104 WUBlastX DNA_IS4EU 35775 36605 129 + . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold94 WUBlastX DNA_Harbinger 55939 56052 69 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 25028 25540 40 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Kolobok 1006082 1006603 212 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1 187964 188143 89 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold867 WUBlastX LINE_CR1 480757 481290 123 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_L2 297686 299209 64 - . . . . . -1 -1 -1 . . . scaffold35194 WUBlastX DNA_Maverick 12989 13378 131 - . . . . . -1 -1 -1 . . . scaffold35194 WUBlastX DNA_Maverick 13455 13541 21 - . . . . . -1 -1 -1 . . . scaffold35194 WUBlastX DNA_Maverick 13692 13991 59 - . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LINE_RTE-X 42390 42575 47 - . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold321 WUBlastX LINE_RTE-X 144608 144988 209 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LINE_RTE-X 273713 273856 36 - . . scaffold801 GLEAN mRNA 264907 277016 0.581073 - . ID=CGI_10024082; scaffold487 WUBlastX LINE_RTE-X 8697 8894 72 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L1-Tx1 321716 322333 135 + . . . . . -1 -1 -1 . . . scaffold432 WUBlastX DNA_TcMar-Tc1 325419 325718 164 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L2 313193 313351 63 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold1532 WUBlastX LINE_CR1-L2 57259 57306 29 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 42042 42953 624 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L2 762988 763704 193 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LINE_CR1-L2 166246 166770 181 - . . . . . -1 -1 -1 . . . scaffold187 WUBlastX LTR_Ngaro 15402 15677 56 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LTR_DIRS 88290 89270 173 - . . . . . -1 -1 -1 . . . scaffold36936 WUBlastX DNA_Crypton 15097 15618 182 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold39120 WUBlastX DNA_Harbinger 63818 64180 224 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 238765 239190 208 + . . . . . -1 -1 -1 . . . C29410 WUBlastX LTR_Gypsy 47 1168 206 + . . . . . -1 -1 -1 . . . scaffold40512 WUBlastX DNA_IS4EU 50930 51472 91 + . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold601 WUBlastX DNA_IS4EU 851892 852608 191 - . . . . . -1 -1 -1 . . . scaffold35406 WUBlastX RC_Helitron 13388 14164 129 + . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold43932 WUBlastX LINE_R2-Hero 328062 328712 131 - . . . . . -1 -1 -1 . . . C32536 WUBlastX LINE_RTE-X 1072 1713 166 + . . . . . -1 -1 -1 . . . C27694 WUBlastX DNA_Maverick 2694 3140 230 - . . C27694 GLEAN mRNA 2532 3020 1 - . ID=CGI_10000376; C27092 WUBlastX LINE_RTE-X 3471 4010 189 - . . . . . -1 -1 -1 . . . C32098 WUBlastX DNA_TcMar-Tc1 3801 4319 58 - . . . . . -1 -1 -1 . . . C33256 WUBlastX DNA_TcMar-Tc1 6384 6890 67 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_L1-Tx1 26074 26976 116 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_L1-Tx1 27023 28711 893 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_L1-Tx1 28734 28844 33 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_L1-Tx1 28818 29609 432 - . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LINE_CR1 216947 218518 473 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Gypsy 53747 54313 425 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Gypsy 54310 54783 233 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Maverick 135953 137752 1034 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Maverick 137935 138432 303 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Maverick 138459 138779 199 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 143161 144357 909 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 144318 144374 44 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Pao 11355 11444 46 + . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LTR_Pao 114491 114754 107 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1-L2 361578 362390 122 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L2 615153 615671 134 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_L2 232792 233226 50 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Ngaro 307628 308074 154 - . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_IS4EU 128205 129701 110 + . . . . . -1 -1 -1 . . . C31340 WUBlastX LTR_Gypsy 8531 9223 207 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1-Tx1 1038110 1038979 133 - . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_L1 10793 10930 77 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-BovB 44660 45169 53 - . . . . . -1 -1 -1 . . . scaffold1086 WUBlastX LINE_RTE-X 51521 52042 203 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 37591 38439 182 - . . . . . -1 -1 -1 . . . C24726 WUBlastX DNA_Sola 855 974 53 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 84313 84600 144 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_DIRS 451778 452335 200 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_DIRS 64048 65565 983 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LTR_Gypsy 98883 99305 68 + . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 45618 46226 84 - . . . . . -1 -1 -1 . . . scaffold43194 WUBlastX DNA_IS4EU 4194 4301 20 + . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_Penelope 163757 165064 181 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX DNA_Merlin 143984 144286 42 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_RTE-X 236455 236661 62 - . . . . . -1 -1 -1 . . . scaffold39652 WUBlastX LINE_RTE-X 62778 63089 55 - . . . . . -1 -1 -1 . . . scaffold39652 WUBlastX LINE_RTE-X 63770 64324 100 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LINE_RTE-X 90573 90656 22 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-BovB 191235 192074 196 + . . scaffold43726 GLEAN mRNA 189584 195489 0.999572 - . ID=CGI_10012025; scaffold626 WUBlastX DNA_Maverick 620256 620513 222 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_Sola 129715 130341 224 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_Sola 397563 397976 92 + . . scaffold203 GLEAN mRNA 376437 414685 0.482825 + . ID=CGI_10021070; scaffold203 WUBlastX DNA_Sola 397563 397976 92 + . . scaffold203 GLEAN mRNA 380949 400052 0.995245 - . ID=CGI_10021071; scaffold38678 WUBlastX LINE_CR1-L2 16297 16515 64 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Ngaro 543399 543998 165 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 533835 534110 143 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX DNA_Crypton 103994 104674 223 + . . scaffold1673 GLEAN mRNA 58935 108305 0.828275 + . ID=CGI_10013571; scaffold37790 WUBlastX LTR_Ngaro 9886 10131 96 - . . scaffold37790 GLEAN mRNA 1900 11693 1 - . ID=CGI_10002498; scaffold37790 WUBlastX LTR_Ngaro 10173 10550 139 - . . scaffold37790 GLEAN mRNA 1900 11693 1 - . ID=CGI_10002498; scaffold39424 WUBlastX DNA_IS4EU 60468 61319 151 - . . . . . -1 -1 -1 . . . scaffold729 WUBlastX RC_Helitron 23195 23938 236 - . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX LTR_Gypsy 12321 15089 1987 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_CR1 223676 224806 904 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold513 WUBlastX LTR_Pao 11485 12846 881 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold1290 WUBlastX LTR_Gypsy-Cigr 6521 9358 2037 - . . . . . -1 -1 -1 . . . scaffold1260 WUBlastX DNA_Academ 101818 102102 144 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101818 102102 144 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold1260 WUBlastX DNA_Academ 102082 102618 91 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 102082 102618 91 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold1260 WUBlastX DNA_Academ 103026 103310 62 - . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 103026 103310 62 - . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold149 WUBlastX LINE_L2 54389 54712 106 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L2 55024 55167 45 + . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX DNA_hAT-Tip100 1368 2522 195 + . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 87689 88084 144 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_L1-Tx1 366123 366647 25 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 514084 514434 227 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 212963 213433 181 + . . . . . -1 -1 -1 . . . scaffold415 WUBlastX LINE_RTE-BovB 44905 47013 1590 + . . scaffold415 GLEAN mRNA 36227 55197 0.784737 - . ID=CGI_10004218; scaffold43452 WUBlastX LINE_L2 134941 135540 200 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_L2 371097 371345 98 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; C29134 WUBlastX LTR_Ngaro 4212 4949 202 + . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Ngaro 107734 108279 234 + . . . . . -1 -1 -1 . . . scaffold809 WUBlastX LTR_Ngaro 105673 106461 198 + . . scaffold809 GLEAN mRNA 102798 115167 0.991748 + . ID=CGI_10006490; scaffold809 WUBlastX LTR_Ngaro 105379 106455 183 + . . scaffold809 GLEAN mRNA 102798 115167 0.991748 + . ID=CGI_10006490; scaffold301 WUBlastX DNA_Harbinger 103084 104079 147 - . . . . . -1 -1 -1 . . . scaffold37732 WUBlastX LINE_L1 2282 3484 140 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 1137508 1137801 35 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold1733 WUBlastX LINE_RTE-X 114224 115375 153 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 22645 23325 212 + . . . . . -1 -1 -1 . . . scaffold39212 WUBlastX DNA_TcMar-Tc1 4 639 230 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 79146 80138 651 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 289743 289874 27 - . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 21091 21132 22 + . . . . . -1 -1 -1 . . . scaffold33704 WUBlastX DNA_PiggyBac 12174 12641 239 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_En-Spm 545074 545520 129 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_En-Spm 545786 546214 107 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Ngaro 312515 312781 75 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L2 706648 707142 192 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 987745 988080 111 + . . scaffold1532 GLEAN mRNA 980578 997386 0.999875 - . ID=CGI_10028278; scaffold905 WUBlastX LINE_L1-Tx1 5805 5924 38 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold37408 WUBlastX LINE_L1-Tx1 437 1663 159 + . . . . . -1 -1 -1 . . . scaffold40856 WUBlastX LINE_RTE-X 84076 84390 196 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-X 319245 320036 185 - . . scaffold237 GLEAN mRNA 315225 321061 0.999786 + . ID=CGI_10021581; scaffold632 WUBlastX LTR_Pao 94565 98128 2301 + . . scaffold632 GLEAN mRNA 94211 107626 0.991776 + . ID=CGI_10018438; scaffold43122 WUBlastX LTR_Gypsy 162680 163129 62 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 79104 79388 125 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_CR1 155416 155844 222 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold1148 WUBlastX LTR_Ngaro 179030 179896 193 + . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LTR_Ngaro 67766 68155 64 + . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LTR_Gypsy 32842 33687 79 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold417 WUBlastX LTR_Gypsy 36845 37078 63 + . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX DNA_Harbinger 37534 38151 253 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1 28973 29608 272 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L1 316608 317237 244 - . . scaffold753 GLEAN mRNA 307757 329663 0.499275 + . ID=CGI_10014210; scaffold868 WUBlastX DNA_TcMar-Tc1 139166 139819 280 + . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX DNA_TcMar-Tc1 31885 32826 237 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 219352 219642 36 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_Jockey 22878 23234 42 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1-Tx1 698675 699889 162 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LINE_CR1-L2 153704 153832 94 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1 58555 59115 107 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Harbinger 467745 467984 111 - . . . . . -1 -1 -1 . . . C35716 WUBlastX DNA_IS4EU 16994 17248 116 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_Penelope 657227 657541 100 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-BovB 310274 310660 98 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-X 702777 703619 235 - . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX LINE_RTE-X 8574 9470 225 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_L1-Tx1 149690 149941 129 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LTR_Pao 125742 126248 37 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold20 WUBlastX LTR_Ngaro 540223 540378 128 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Ngaro 164691 165383 168 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX DNA_hAT-Tip100 67684 68244 210 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX DNA_hAT-Tip100 68669 68908 40 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 93260 93373 73 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 94523 94864 116 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95018 95302 42 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95647 95775 98 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold1424 WUBlastX DNA_Harbinger 39754 39849 73 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX DNA_Harbinger 40790 41191 62 - . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LINE_L1 58528 58629 26 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 515809 516636 93 + . . . . . -1 -1 -1 . . . scaffold39620 WUBlastX LTR_Pao 67670 67837 110 - . . . . . -1 -1 -1 . . . scaffold39620 WUBlastX LTR_Pao 70756 71241 326 - . . . . . -1 -1 -1 . . . scaffold39620 WUBlastX LTR_Pao 72583 72906 30 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Gypsy 25282 26577 1050 + . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_CR1-L2 464605 465582 235 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Ngaro 1533083 1534006 242 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 296191 296901 174 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 328382 329125 125 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1237 WUBlastX LTR_DIRS 59635 59874 146 + . . . . . -1 -1 -1 . . . scaffold265 WUBlastX LTR_Ngaro 31784 31888 49 - . . . . . -1 -1 -1 . . . scaffold35806 WUBlastX LINE_RTE-BovB 24663 24917 126 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 229330 229710 294 - . . . . . -1 -1 -1 . . . scaffold941 WUBlastX LTR_Gypsy 19530 20246 311 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX DNA_Harbinger 372536 373066 239 + . . scaffold1863 GLEAN mRNA 370491 381418 0.892726 + . ID=CGI_10016696; scaffold287 WUBlastX DNA_Harbinger 73639 74664 184 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1-Tx1 1046272 1047297 166 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold1267 WUBlastX LINE_L1-Tx1 568735 569091 67 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_L1-Tx1 569094 569489 204 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 1561494 1562450 154 + . . . . . -1 -1 -1 . . . scaffold868 WUBlastX LINE_Penelope 115274 116626 208 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_Penelope 571436 572038 272 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold29 WUBlastX LINE_RTE-X 12715 13413 196 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_RTE-X 141794 142114 153 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold450 WUBlastX LINE_L1-Tx1 126251 126739 147 - . . . . . -1 -1 -1 . . . scaffold686 WUBlastX DNA_TcMar-Tc1 12223 12687 244 + . . scaffold686 GLEAN mRNA 9292 17710 0.993892 - . ID=CGI_10004461; scaffold748 WUBlastX LTR_Pao 11971 12558 421 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 14757 15629 629 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 410567 412702 1406 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 412669 414450 1291 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Pao 295118 295807 566 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 1112704 1112787 71 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 1113898 1114368 330 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 1114203 1115552 1273 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 1116108 1116488 132 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LTR_Pao 130499 130945 231 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 188362 188532 31 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold37760 WUBlastX LTR_DIRS 21433 21609 43 - . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold1707 WUBlastX DNA_hAT-hATw 82010 82267 87 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX RC_Helitron 42602 43102 22 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold1093 WUBlastX LINE_L1 43913 44056 51 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L1 45069 45188 49 - . . . . . -1 -1 -1 . . . scaffold1886 WUBlastX DNA_PiggyBac 176002 176106 26 - . . . . . -1 -1 -1 . . . scaffold1886 WUBlastX DNA_PiggyBac 177219 177626 103 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_TcMar-Pogo 596016 596390 263 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_DIRS 30147 30602 145 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_DIRS 30574 30828 160 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX DNA_TcMar-Tc1 67319 67861 124 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy-Cigr 64382 64744 139 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L2 214066 214308 161 + . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX LINE_L2 266796 267431 214 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_L2 217768 218493 280 + . . . . . -1 -1 -1 . . . scaffold40512 WUBlastX LTR_Gypsy 9115 9285 34 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX DNA_hAT-Tip100 113976 114680 133 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX DNA_Harbinger 656480 656968 211 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Gypsy 354999 355964 20 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold751 WUBlastX LINE_L1 147789 148205 30 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_MuDR 393567 393746 107 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold619 WUBlastX LINE_RTE-BovB 171203 171670 324 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 632110 632595 303 - . . . . . -1 -1 -1 . . . C25116 WUBlastX LTR_Ngaro 435 791 35 + . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LINE_L1-Tx1 35507 36235 247 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy-Cigr 955531 956034 343 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LTR_Pao 13260 13502 54 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_Penelope 190198 190881 314 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_RTE-X 759764 760363 131 - . . . . . -1 -1 -1 . . . C33378 WUBlastX LTR_Ngaro 6457 7356 264 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 23695 24249 329 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 6279 7583 205 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 225514 226227 277 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_Penelope 27835 28518 306 + . . scaffold517 GLEAN mRNA 26711 42046 0.883003 + . ID=CGI_10008977; scaffold43500 WUBlastX LINE_L1 141747 142022 71 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 495954 496163 31 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LINE_RTE-X 322257 323393 239 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; C28350 WUBlastX DNA_TcMar-Tc1 3 617 318 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 6006 6494 80 + . . . . . -1 -1 -1 . . . scaffold1450 WUBlastX LINE_L2 6126 6818 250 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_L2 216345 217037 250 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold4 WUBlastX LTR_DIRS 318923 319258 51 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 798345 798944 153 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 645977 646279 39 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_Penelope 134735 135412 324 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L1-Tx1 403898 404401 40 - . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX LTR_Pao 331801 331980 84 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold581 WUBlastX DNA_Harbinger 164627 165601 308 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LINE_L1-Tx1 17841 18326 209 - . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_RTE-X 205247 206209 283 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_TcMar-Tigge 1057407 1058633 338 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_DIRS 26956 27414 209 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 407857 408132 22 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold469 WUBlastX LTR_Gypsy 186296 187306 369 + . . . . . -1 -1 -1 . . . C28876 WUBlastX LTR_Gypsy 2 1045 392 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 334502 334762 53 - . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_RTE-X 86315 86563 83 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold209 WUBlastX LTR_DIRS 250370 250819 145 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 250810 251283 149 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 251253 251363 67 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; C23248 WUBlastX LINE_L1-Tx1 1011 2162 249 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 1454484 1455152 128 - . . scaffold77 GLEAN mRNA 1435771 1455368 0.401661 + . ID=CGI_10028040; scaffold816 WUBlastX LTR_Ngaro 196842 197132 67 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_L2 25653 26330 240 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_L2 26347 26469 120 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 51741 52196 295 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 53174 53629 295 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 78899 79477 370 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 79555 79650 53 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX RC_Helitron 291631 291675 20 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX RC_Helitron 291710 291805 38 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX RC_Helitron 291819 291899 22 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_L1-Tx1 102991 103362 123 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1-Tx1 102991 103362 123 - . . scaffold41954 GLEAN mRNA 103267 126908 0.678183 - . ID=CGI_10005854; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103759 139 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103759 139 - . . scaffold41954 GLEAN mRNA 103267 126908 0.678183 - . ID=CGI_10005854; scaffold42348 WUBlastX LINE_RTE-X 101837 102529 305 - . . scaffold42348 GLEAN mRNA 96568 107151 0.643244 - . ID=CGI_10006683; scaffold1307 WUBlastX LINE_L1-Tx1 189786 190466 200 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Gypsy 669372 671030 402 + . . scaffold1703 GLEAN mRNA 642760 671813 0.998976 - . ID=CGI_10023072; scaffold42558 WUBlastX LTR_Gypsy 73660 74193 35 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 247734 247997 29 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold1750 WUBlastX LINE_Penelope 603420 604256 197 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_Penelope 604428 604826 87 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 204005 204796 74 - . . . . . -1 -1 -1 . . . scaffold1090 WUBlastX DNA_IS4EU 3596 3847 103 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_IS4EU 512415 513104 405 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1 88417 89355 344 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX DNA_TcMar-Tc1 476923 477945 299 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1-Tx1 737819 738424 35 + . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX LINE_R2-Hero 244600 245169 427 - . . scaffold1722 GLEAN mRNA 244436 245572 0.963225 + . ID=CGI_10014886; scaffold1546 WUBlastX DNA_Kolobok 183480 183653 99 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 184117 184311 79 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 184533 184859 111 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 184894 184980 22 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1475 WUBlastX LINE_L1 86959 87192 57 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 1285426 1285635 147 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_RTE-X 513298 513546 65 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_RTE-X 513576 513650 23 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_RTE-X 513697 514245 315 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_CR1 46572 46745 23 - . . . . . -1 -1 -1 . . . C29942 WUBlastX LTR_Ngaro 419 1357 347 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 291617 291853 132 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1005071 1005424 105 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 197228 197317 42 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 197272 197697 411 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-BovB 448886 450448 269 - . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold1423 WUBlastX LINE_RTE-BovB 349225 349785 162 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Maverick 163829 164464 407 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_L1-Tx1 256872 257288 84 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold365 WUBlastX LTR_Pao 250496 250693 118 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold1590 WUBlastX LTR_Gypsy 16135 16236 69 + . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_RTE-X 97746 97982 58 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold1350 WUBlastX LINE_RTE-X 398346 398513 81 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold773 WUBlastX LTR_Gypsy 268496 268873 46 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 511985 512773 293 + . . . . . -1 -1 -1 . . . C35172 WUBlastX DNA_En-Spm 1741 3876 340 + . . C35172 GLEAN mRNA 161 6399 0.907032 + . ID=CGI_10001431; scaffold1449 WUBlastX RC_Helitron 177709 178599 435 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_IS4EU 324254 324604 45 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_Penelope 283411 284328 149 + . . . . . -1 -1 -1 . . . scaffold42128 WUBlastX DNA_TcMar-Tc1 11706 12173 123 + . . scaffold42128 GLEAN mRNA 1970 15266 0.99078 + . ID=CGI_10006194; scaffold1350 WUBlastX LINE_RTE-X 245290 246633 399 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_Maverick 239161 240051 424 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 240711 240761 33 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 240764 240871 32 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold602 WUBlastX DNA_TcMar-Tc1 226666 227334 271 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_TcMar-Tc1 227357 227707 111 - . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX DNA_TcMar-Tc1 121104 121508 174 + . . . . . -1 -1 -1 . . . scaffold40100 WUBlastX LINE_CR1 5593 6003 286 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 235485 236510 365 + . . . . . -1 -1 -1 . . . scaffold278 WUBlastX LTR_Gypsy 32655 33155 73 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L1-Tx1 625941 626132 72 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX DNA_Sola 113520 114509 356 - . . . . . -1 -1 -1 . . . scaffold39078 WUBlastX LINE_L1-Tx1 58281 58745 48 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LINE_L1-Tx1 265192 265581 55 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1-Tx1 266805 267875 40 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold721 WUBlastX LINE_CR1-L2 200271 200714 93 - . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_DIRS 114008 114469 184 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 501788 502402 429 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_Jockey 303652 303684 21 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_TcMar-Tc1 131924 132136 143 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 131924 132136 143 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_TcMar-Tc1 132106 132432 195 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 132106 132432 195 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_TcMar-Tc1 132473 132856 172 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 132473 132856 172 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold1329 WUBlastX LTR_DIRS 264750 265586 411 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LINE_CR1-L2 12728 13561 302 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1-Tx1 196029 196328 88 - . . . . . -1 -1 -1 . . . scaffold1526 WUBlastX LTR_Pao 123466 124740 417 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LTR_Gypsy 117674 118318 474 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold1267 WUBlastX LTR_Gypsy 370268 371380 378 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_hAT-Tip100 56747 57010 82 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_TcMar-Marin 115327 115707 229 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_TcMar-Marin 116291 116584 100 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX DNA_hAT 10612 12066 475 - . . scaffold43702 GLEAN mRNA 10417 12018 1 - . ID=CGI_10011898; scaffold43702 WUBlastX DNA_hAT 10612 12066 475 - . . scaffold43702 GLEAN mRNA 8720 20816 0.998449 + . ID=CGI_10011897; scaffold337 WUBlastX LINE_CR1 441600 441851 100 - . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Ngaro 49817 50779 375 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX DNA_hAT-Tip100 212117 212518 103 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX DNA_hAT-Tip100 212506 212949 257 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX DNA_hAT-Tip100 212928 213050 50 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX DNA_hAT-Tip100 213931 214137 102 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Ngaro 517426 518328 430 - . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LINE_RTE-X 81358 81954 369 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 258792 259265 33 + . . . . . -1 -1 -1 . . . scaffold41388 WUBlastX LINE_RTE-X 7794 8228 55 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX RC_Helitron 945112 946284 499 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L1 909273 910880 256 + . . . . . -1 -1 -1 . . . C25466 WUBlastX LTR_DIRS 364 1008 268 + . . . . . -1 -1 -1 . . . C25466 WUBlastX LTR_DIRS 1007 1303 201 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LTR_Gypsy 35225 36169 495 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_R2-Hero 398568 398912 168 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 301958 302407 110 + . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX LINE_RTE-X 5157 5273 82 + . . . . . -1 -1 -1 . . . scaffold40456 WUBlastX LTR_Pao 89587 91212 419 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_L1 688533 688589 36 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold1067 WUBlastX DNA_En-Spm 99666 100829 276 + . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold43026 WUBlastX DNA_TcMar-Tc1 197726 198325 359 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX DNA_TcMar-Marin 111790 112347 323 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 708134 708838 84 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold1307 WUBlastX DNA_TcMar-Tc1 672782 673471 393 - . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_Gypsy 11087 11278 28 - . . . . . -1 -1 -1 . . . scaffold41054 WUBlastX DNA_TcMar-Marin 35288 35695 211 - . . scaffold41054 GLEAN mRNA 15508 39181 0.98779 - . ID=CGI_10004673; scaffold41054 WUBlastX DNA_TcMar-Marin 36165 36542 153 - . . scaffold41054 GLEAN mRNA 15508 39181 0.98779 - . ID=CGI_10004673; scaffold485 WUBlastX LINE_Penelope 875031 876851 387 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-X 241266 241868 168 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L1 335185 335442 76 - . . . . . -1 -1 -1 . . . C27412 WUBlastX LINE_L2 3089 3352 36 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1-Tx1 337836 338678 342 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LINE_L1-Tx1 59567 61198 225 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX LINE_L1-Tx1 61206 61277 63 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold410 WUBlastX LINE_CR1 484604 485704 469 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_CR1 444808 446166 474 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 126761 127042 91 - . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Ngaro 51469 52263 353 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 52314 52529 63 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 52511 52627 20 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold1551 WUBlastX LTR_Gypsy 106499 106900 50 + . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 149274 149336 33 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1-Tx1 760227 760655 183 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1-Tx1 761145 762134 229 + . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX DNA_TcMar-Marin 59724 60389 360 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 632783 633778 488 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 632783 633778 488 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold1314 WUBlastX LINE_L1-Tx1 85455 85586 23 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 229879 230130 123 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 436748 437410 373 + . . . . . -1 -1 -1 . . . scaffold34420 WUBlastX LINE_L1-Tx1 4 762 526 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-BovB 715568 716821 528 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold42790 WUBlastX LTR_DIRS 15913 16824 563 + . . . . . -1 -1 -1 . . . scaffold37558 WUBlastX LTR_DIRS 3809 4669 522 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_Maverick 131453 132508 547 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1-Tx1 155184 155420 126 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX DNA_TcMar-Tc1 312343 312726 105 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_L2 390658 391149 189 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold790 WUBlastX LTR_Gypsy 119294 119926 143 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_L1-Tx1 130271 132058 209 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_Sola 215370 216005 172 + . . scaffold664 GLEAN mRNA 213415 231457 0.897817 + . ID=CGI_10021440; scaffold323 WUBlastX LINE_L1-Tx1 136881 137933 246 - . . . . . -1 -1 -1 . . . C29178 WUBlastX LINE_L1-Tx1 5055 6260 253 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L1 333934 334632 278 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L1 334604 335140 212 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_Penelope 326339 326719 89 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold42210 WUBlastX LTR_Ngaro 1 183 119 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_TcMar-Tc1 928394 928975 163 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_TcMar-Tc1 928912 929373 274 + . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX DNA_TcMar-Tc1 340921 341379 182 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LTR_Ngaro 180957 182054 418 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LTR_Ngaro 182096 182257 48 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_CR1-L2 79722 80156 53 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Academ 260459 261139 231 - . . scaffold550 GLEAN mRNA 260447 260869 0.579462 - . ID=CGI_10012496; scaffold1485 WUBlastX LINE_RTE-X 48294 48602 185 - . . scaffold1485 GLEAN mRNA 39332 48639 0.999437 - . ID=CGI_10003293; scaffold1485 WUBlastX LINE_RTE-X 48601 49017 194 - . . scaffold1485 GLEAN mRNA 39332 48639 0.999437 - . ID=CGI_10003293; scaffold1485 WUBlastX LINE_RTE-X 48972 49346 185 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 83025 83123 42 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 83197 83709 328 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold1399 WUBlastX LTR_DIRS 117515 118438 596 - . . scaffold1399 GLEAN mRNA 95731 121782 0.470575 + . ID=CGI_10007050; scaffold419 WUBlastX DNA_Kolobok 895794 896087 34 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 896075 896497 197 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 896641 896829 105 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 896952 897197 108 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 897278 897448 79 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 897556 897705 115 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold536 WUBlastX LINE_Penelope 131439 132920 513 + . . . . . -1 -1 -1 . . . scaffold38274 WUBlastX LINE_RTE-X 12415 12783 175 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_L1-Tx1 458429 459541 382 + . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 413593 413724 38 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 355462 356046 309 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_L1-Tx1 329473 330546 65 - . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold1671 WUBlastX LINE_L2 104412 105161 325 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1 75879 76517 228 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold37722 WUBlastX LINE_CR1-L2 43465 43827 170 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 707172 708404 632 + . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LTR_Ngaro 188 928 515 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 133458 133772 26 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 133772 134179 228 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 134199 135038 166 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 136298 136447 38 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_RTE-X 324036 325979 167 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_L1-Tx1 258288 258599 78 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold831 WUBlastX LINE_L1-Tx1 252016 252624 35 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LINE_L1-Tx1 252852 253805 394 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_RTE-X 679797 680228 83 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LTR_Ngaro 36650 36880 134 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-X 28520 29572 404 + . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX LINE_RTE-X 47406 48539 601 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_RTE-X 130036 130407 100 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold43258 WUBlastX LINE_L1-Tx1 277 1425 608 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LTR_Gypsy 59782 60186 85 + . . . . . -1 -1 -1 . . . scaffold788 WUBlastX LINE_L1 36398 36604 44 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_RTE-BovB 236664 236768 76 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_CR1 403551 404165 431 + . . . . . -1 -1 -1 . . . C26936 WUBlastX LTR_Gypsy 2205 2915 412 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold33530 WUBlastX LINE_L1-Tx1 9951 10628 278 - . . . . . -1 -1 -1 . . . scaffold33530 WUBlastX LINE_L1-Tx1 10658 10903 171 - . . . . . -1 -1 -1 . . . scaffold33530 WUBlastX LINE_L1-Tx1 10867 11391 176 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_Sola 487888 488460 101 - . . . . . -1 -1 -1 . . . scaffold34224 WUBlastX LTR_Ngaro 13119 13541 131 - . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_Ngaro 53115 54149 678 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 534837 535595 446 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_RTE-BovB 46260 46634 205 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_RTE-BovB 46646 47323 508 - . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 37103 37705 446 - . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Pao 47851 48450 253 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 136943 137545 111 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 343122 343361 37 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1 559059 559262 44 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L2 182728 183666 441 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L2 183690 184403 202 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 125559 125897 248 - . . . . . -1 -1 -1 . . . C28702 WUBlastX LTR_Gypsy 5332 5604 171 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 790934 792328 607 - . . scaffold501 GLEAN mRNA 786323 819712 0.813868 + . ID=CGI_10027531; C28734 WUBlastX LINE_RTE-X 4119 5501 647 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1 23518 23631 66 + . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LTR_Gypsy 167646 168638 797 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 86945 87025 21 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_L1-Tx1 773733 774452 254 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_hAT-hATw 383180 383293 44 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 141136 141492 229 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 141459 141656 53 - . . . . . -1 -1 -1 . . . scaffold36140 WUBlastX LINE_CR1-L2 8933 9388 298 - . . scaffold36140 GLEAN mRNA 6624 23811 0.998174 + . ID=CGI_10001795; scaffold334 WUBlastX LINE_RTE-X 718658 719914 391 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 436360 436749 81 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 437984 438091 79 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 438094 438399 204 + . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_Gypsy 13022 14401 637 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 97114 97704 66 + . . . . . -1 -1 -1 . . . scaffold36 WUBlastX LTR_Gypsy 3743 6757 796 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold562 WUBlastX LTR_Gypsy 199824 200069 54 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_Penelope 158977 160515 770 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Sola 1251596 1251901 94 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Sola 1251897 1252220 21 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Sola 1253631 1253870 157 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Sola 1254985 1255200 72 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Sola 1255500 1256216 232 - . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LTR_Gypsy 1840 3084 885 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_L1-Tx1 24641 25084 279 - . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L1-Tx1 73758 74123 135 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold368 WUBlastX LTR_Pao 419063 419212 20 - . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 89466 90173 105 - . . . . . -1 -1 -1 . . . C33592 WUBlastX LTR_Gypsy 792 1310 276 + . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LTR_Gypsy 47578 48174 376 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Ngaro 148781 149695 531 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LTR_DIRS 595301 597343 804 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 5599 5736 25 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LTR_Ngaro 196403 197980 840 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Ngaro 63478 64143 444 + . . . . . -1 -1 -1 . . . scaffold874 WUBlastX LINE_L1 5001 6272 812 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LTR_Ngaro 153461 154348 525 + . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX DNA_TcMar-Marin 111276 111419 55 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1 1414 1497 59 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Pao 28709 28924 56 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX DNA_Academ 124759 125052 55 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_CR1-L2 565628 565780 26 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold448 WUBlastX LINE_CR1-L2 66612 66758 45 + . . scaffold448 GLEAN mRNA 53576 85492 0.998765 + . ID=CGI_10024929; scaffold503 WUBlastX LINE_L2 16019 16420 27 - . . . . . -1 -1 -1 . . . scaffold41722 WUBlastX LINE_CR1 7852 8028 45 + . . . . . -1 -1 -1 . . . scaffold42570 WUBlastX LINE_CR1-L2 16542 16592 21 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold41684 WUBlastX LINE_L2 84033 84200 63 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LINE_CR1 13288 13353 23 - . . scaffold1166 GLEAN mRNA 4220 15993 0.883594 + . ID=CGI_10006284; scaffold37938 WUBlastX LINE_CR1 45635 45841 46 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L2 129151 129627 44 + . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_CR1 7593 7826 57 - . . . . . -1 -1 -1 . . . scaffold382 WUBlastX LINE_CR1 1864 1914 40 - . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Ngaro 47940 48113 86 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Ngaro 814887 814985 70 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_Crypton 216515 216865 60 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_CR1 268575 268628 22 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Ngaro 411163 411621 48 - . . scaffold332 GLEAN mRNA 403551 412368 0.544643 + . ID=CGI_10020886; scaffold206 WUBlastX LTR_Gypsy 79716 79805 22 + . . scaffold206 GLEAN mRNA 57948 87960 0.702119 + . ID=CGI_10011372; scaffold854 WUBlastX LTR_Gypsy 13946 14161 69 - . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_Gypsy 218503 218973 57 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold695 WUBlastX LTR_Gypsy 370723 371115 68 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 676826 677065 77 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Harbinger 283628 283807 72 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold1728 WUBlastX DNA_Harbinger 113283 113555 49 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX DNA_hAT-Blackja 12058 12264 58 + . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT-Ac 1778 1882 35 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT-Ac 2981 3067 24 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX RC_Helitron 91084 91338 78 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX DNA_Kolobok-IS4 308721 308951 61 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX DNA_IS4EU 20177 20572 50 + . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX DNA_IS4EU 219389 220018 62 - . . scaffold43358 GLEAN mRNA 218442 219604 0.593251 - . ID=CGI_10009980; scaffold43136 WUBlastX LINE_I 102175 102222 22 + . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_L1 194300 194449 69 + . . scaffold556 GLEAN mRNA 194019 202410 0.999351 - . ID=CGI_10016802; scaffold1352 WUBlastX LINE_L1 5762 5953 20 + . . . . . -1 -1 -1 . . . scaffold1497 WUBlastX DNA_Kolobok 24907 25080 53 + . . scaffold1497 GLEAN mRNA 15026 34353 0.836332 + . ID=CGI_10006959; scaffold40346 WUBlastX LINE_L1-Tx1 25241 25453 40 + . . scaffold40346 GLEAN mRNA 23217 29434 0.99961 - . ID=CGI_10004041; scaffold43940 WUBlastX LINE_L1-Tx1 299886 299960 33 - . . scaffold43940 GLEAN mRNA 299103 307092 0.985282 + . ID=CGI_10014161; scaffold43940 WUBlastX LINE_L1-Tx1 300004 300186 47 - . . scaffold43940 GLEAN mRNA 299103 307092 0.985282 + . ID=CGI_10014161; scaffold42890 WUBlastX LINE_L1 200197 200433 64 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LINE_L1 335427 335600 81 + . . scaffold304 GLEAN mRNA 327782 339627 0.999019 - . ID=CGI_10016567; scaffold4 WUBlastX LINE_L1 435636 435977 36 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold43954 WUBlastX LINE_L1 177277 177588 37 - . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L1 9407 9766 75 - . . . . . -1 -1 -1 . . . scaffold1814 WUBlastX LTR_Ngaro 80358 80648 58 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_TcMar-Marin 422425 422643 25 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_TcMar-Marin 155304 155642 64 + . . scaffold286 GLEAN mRNA 149274 159610 0.543706 - . ID=CGI_10015961; scaffold354 WUBlastX DNA_TcMar-Marin 726554 726835 40 + . . . . . -1 -1 -1 . . . scaffold1726 WUBlastX DNA_P 349452 349547 31 - . . scaffold1726 GLEAN mRNA 346832 358042 0.529003 - . ID=CGI_10015641; scaffold1315 WUBlastX LINE_Penelope 643491 643688 81 - . . . . . -1 -1 -1 . . . scaffold659 WUBlastX DNA_MuDR 92785 93144 61 - . . scaffold659 GLEAN mRNA 92752 93126 0.866674 - . ID=CGI_10014694; scaffold298 WUBlastX LINE_Penelope 388028 388423 49 - . . . . . -1 -1 -1 . . . scaffold693 WUBlastX LINE_RTE-BovB 10974 11105 54 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold354 WUBlastX LINE_RTE-BovB 697802 697942 27 - . . scaffold354 GLEAN mRNA 684389 702263 0.175247 + . ID=CGI_10025734; scaffold354 WUBlastX LINE_RTE-BovB 697920 698126 24 - . . scaffold354 GLEAN mRNA 684389 702263 0.175247 + . ID=CGI_10025734; scaffold784 WUBlastX LINE_RTE-X 617137 617241 25 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 463810 463890 40 - . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_RTE-X 132817 133125 50 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 104465 104542 22 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 105187 105438 28 + . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX LINE_RTE-X 108539 108703 55 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 459234 459476 25 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold4 WUBlastX LINE_RTE-X 495267 495509 25 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_RTE-X 244159 244227 29 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_RTE-X 244397 244570 38 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 275862 276068 47 - . . . . . -1 -1 -1 . . . scaffold43988 WUBlastX LINE_RTE-BovB 7272 7763 38 + . . . . . -1 -1 -1 . . . scaffold174 WUBlastX DNA_Maverick 161526 161960 54 + . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX DNA_Maverick 7080 7391 67 + . . . . . -1 -1 -1 . . . C30550 WUBlastX LINE_Rex-Babar 5580 5699 46 - . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX DNA_MuDR 58284 58499 91 - . . scaffold1442 GLEAN mRNA 57740 58739 1 - . ID=CGI_10003586; scaffold716 WUBlastX LTR_Gypsy 347002 347220 72 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_R2 248210 248434 89 - . . scaffold1131 GLEAN mRNA 246503 250952 0.387708 - . ID=CGI_10013505; scaffold35194 WUBlastX DNA_Maverick 13362 13517 33 - . . . . . -1 -1 -1 . . . scaffold1804 WUBlastX DNA_PiggyBac 260872 261036 20 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-X 218720 218875 28 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX DNA_TcMar-Marin 411619 411876 68 - . . . . . -1 -1 -1 . . . scaffold42990 WUBlastX LINE_L2 167010 167318 47 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 109044 109391 31 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 271687 271887 26 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1-Tx1 73534 73836 23 - . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold1373 WUBlastX DNA_TcMar-Tc1 131912 132157 31 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_TcMar-Tc1 711513 711740 62 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Copia 1252258 1252407 23 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_hAT-Tip100 80159 80467 46 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Pao 603320 603808 82 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Pao 129823 130002 99 + . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Copia 37533 37742 20 - . . . . . -1 -1 -1 . . . scaffold40994 WUBlastX LTR_Copia 67636 67824 20 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LTR_Gypsy-Cigr 744192 744404 73 - . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy-Cigr 25760 25987 83 + . . . . . -1 -1 -1 . . . C25832 WUBlastX LINE_L2 321 1304 21 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_L2 181701 181817 44 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LTR_Gypsy 192029 192376 83 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_En-Spm 1089139 1089600 63 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_ERVK 550947 551453 68 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 801393 801725 95 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold90 WUBlastX LTR_Gypsy 145298 145501 75 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy-Cigr 92991 93212 90 + . . . . . -1 -1 -1 . . . C28108 WUBlastX LTR_Gypsy 2 433 71 + . . . . . -1 -1 -1 . . . C31398 WUBlastX LTR_Gypsy 7013 7171 79 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 126208 126402 51 - . . . . . -1 -1 -1 . . . C29558 WUBlastX LINE_L2 3834 3887 20 - . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LTR_DIRS 59822 59899 22 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_IS4EU 122640 123008 41 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_hAT-Ac 544181 544282 42 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_hAT-Ac 544405 544539 49 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX DNA_Harbinger 37042 37113 28 + . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LINE_L2 160930 161028 24 + . . scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold115 WUBlastX LINE_Penelope 459614 459781 30 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX DNA_P 33490 33771 93 + . . scaffold41776 GLEAN mRNA 33685 33867 0.542101 + . ID=CGI_10005630; scaffold99 WUBlastX LINE_Penelope 177450 177752 50 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_I-Nimb 437208 437663 72 + . . . . . -1 -1 -1 . . . scaffold487 WUBlastX DNA_TcMar-Tc1 55495 55728 59 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_L1-Tx1 173133 173384 87 + . . . . . -1 -1 -1 . . . scaffold36674 WUBlastX LINE_L1 33432 33632 104 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1 570683 571090 32 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L1 68 502 28 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_Maverick 408736 408867 33 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_Proto2 3186 3617 38 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LINE_RTE-BovB 495177 495695 40 - . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_RTE-RTE 111845 112150 24 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 477111 477287 37 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 477401 477487 20 - . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LINE_RTE-X 229593 229679 20 + . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LINE_RTE-X 229793 229969 37 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_RTE-X 5012 5371 23 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1240269 1240352 22 + . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LINE_RTE-X 112804 113028 53 + . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold90 WUBlastX LINE_RTE-X 32413 32580 42 - . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX LINE_RTE-BovB 5336 5569 64 + . . scaffold42994 GLEAN mRNA 5441 10039 0.836758 + . ID=CGI_10008312; scaffold1819 WUBlastX LINE_L1-Tx1 176042 176296 63 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LINE_L1-Tx1 294277 294558 23 + . . . . . -1 -1 -1 . . . C30864 WUBlastX LINE_L1-Tx1 4324 4572 71 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_L1-Tx1 28863 29240 27 + . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX LINE_L1-Tx1 3998 4156 21 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 603085 603243 69 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_L1-Tx1 68456 68671 64 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_CR1 857035 857202 100 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_Gypsy-Cigr 606962 607183 92 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Pao 48220 48303 27 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 175633 175788 41 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Fot1 649697 650233 39 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold43452 WUBlastX LINE_CR1-L2 153251 153280 26 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_CR1-L2 528903 529181 84 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX LTR_Ngaro 45859 46008 40 - . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_En-Spm 115915 116307 57 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 93518 93892 92 - . . . . . -1 -1 -1 . . . scaffold40216 WUBlastX LTR_Gypsy 20987 21220 58 - . . scaffold40216 GLEAN mRNA 20957 23593 0.998157 - . ID=CGI_10003965; scaffold38360 WUBlastX DNA_Harbinger 53127 53285 86 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 710054 710524 50 - . . scaffold443 GLEAN mRNA 709931 711618 0.889836 - . ID=CGI_10022786; scaffold606 WUBlastX LTR_Gypsy 295528 295629 22 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX DNA_Harbinger 316930 317064 53 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX DNA_Harbinger 244147 244359 91 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_Harbinger 443994 444206 91 + . . scaffold1179 GLEAN mRNA 437414 446157 0.999948 - . ID=CGI_10027365; scaffold517 WUBlastX LINE_L1-Tx1 201127 201213 22 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold43182 WUBlastX LINE_L1 50636 50962 55 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LINE_L1 159295 159387 20 + . . . . . -1 -1 -1 . . . scaffold1519 WUBlastX LINE_L1 70383 70679 59 - . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX LINE_L1 273 632 29 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LINE_L1-Tx1 26970 27161 55 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_TcMar-Tc1 52551 52802 76 - . . scaffold986 GLEAN mRNA 30562 55582 0.15443 + . ID=CGI_10009957; scaffold22 WUBlastX DNA_TcMar-Marin 90386 90583 63 + . . scaffold22 GLEAN mRNA 89502 123774 0.856288 - . ID=CGI_10028828; scaffold1188 WUBlastX LINE_Penelope 216610 216774 71 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold1272 WUBlastX LINE_Penelope 2966 3253 48 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 400795 401127 58 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX DNA_TcMar-Fot1 91651 91839 44 - . . scaffold1634 GLEAN mRNA 89739 98250 0.998588 + . ID=CGI_10005153; scaffold39064 WUBlastX LINE_RTE-X 46843 47268 74 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 151662 152003 44 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 58627 58827 85 - . . scaffold1017 GLEAN mRNA 46180 63837 0.999676 - . ID=CGI_10024980; scaffold709 WUBlastX LINE_RTE-X 315030 315245 35 + . . scaffold709 GLEAN mRNA 310064 322384 0.999026 + . ID=CGI_10020089; scaffold305 WUBlastX LINE_RTE-X 257508 257939 49 + . . scaffold305 GLEAN mRNA 250174 258948 0.912097 + . ID=CGI_10019124; scaffold1221 WUBlastX LINE_RTE-X 551367 551486 55 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 551486 551629 27 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 187506 188252 61 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold804 WUBlastX LINE_RTE-X 293674 293766 43 - . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX LINE_RTE-X 63206 63415 62 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_RTE-X 286638 286805 97 + . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_RTE-X 388108 388395 45 - . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX LINE_RTE-X 80766 80855 21 - . . . . . -1 -1 -1 . . . scaffold32618 WUBlastX LINE_RTE-X 1441 1557 39 + . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_RTE-X 222167 222613 59 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_NOF 466568 467152 75 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_MuDR 401284 401529 67 - . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold1881 WUBlastX LINE_RTE-X 117700 117924 78 + . . . . . -1 -1 -1 . . . scaffold43522 WUBlastX LINE_RTE-X 92707 92922 77 + . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold240 WUBlastX LINE_L1-Tx1 25826 26095 42 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX DNA_hAT-Tip100 44457 44495 20 + . . scaffold243 GLEAN mRNA 30219 44504 0.996041 + . ID=CGI_10006813; scaffold157 WUBlastX LINE_L1-Tx1 658038 658403 74 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX LTR_DIRS 388589 388927 49 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Tc1 876851 876889 23 - . . . . . -1 -1 -1 . . . C27020 WUBlastX LINE_CR1 4044 4343 87 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 105881 106477 26 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 484220 484747 71 + . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_L2 224763 225173 33 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 93840 94019 55 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Pao 1500475 1501197 41 - . . scaffold86 GLEAN mRNA 1500373 1502880 0.568677 - . ID=CGI_10028217; scaffold1669 WUBlastX LTR_Copia 20517 20645 22 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 290 607 75 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-BovB 503573 503725 73 + . . scaffold885 GLEAN mRNA 501162 507823 1 + . ID=CGI_10025210; scaffold581 WUBlastX LTR_Ngaro 177233 177649 25 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 328725 328775 22 - . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX DNA_IS4EU 123305 124111 70 - . . scaffold1143 GLEAN mRNA 121955 124624 0.796524 - . ID=CGI_10009141; scaffold1651 WUBlastX DNA_Kolobok-IS4 73961 74479 94 - . . scaffold1651 GLEAN mRNA 73958 74515 0.997685 - . ID=CGI_10007889; scaffold583 WUBlastX DNA_hAT-Blackja 258909 259112 28 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_CR1 773368 773631 86 - . . . . . -1 -1 -1 . . . scaffold40828 WUBlastX LTR_Gypsy 56881 57060 55 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold290 WUBlastX LTR_Gypsy 432135 432488 36 - . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX DNA_Harbinger 9898 10074 64 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_TcMar-Tc2 323636 324124 28 + . . . . . -1 -1 -1 . . . scaffold633 WUBlastX LINE_Penelope 54078 54476 43 - . . scaffold633 GLEAN mRNA 49171 62840 0.82948 + . ID=CGI_10004269; scaffold935 WUBlastX DNA_TcMar-Tc2 7939 8298 100 + . . scaffold935 GLEAN mRNA 8095 8319 0.998439 + . ID=CGI_10005288; scaffold35490 WUBlastX DNA_TcMar-Marin 4575 4799 112 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LINE_L2 517440 517655 29 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_L1 254276 254449 23 - . . scaffold504 GLEAN mRNA 245472 293737 0.367349 + . ID=CGI_10016028; scaffold1535 WUBlastX LINE_L1-Tx1 12020 12238 72 - . . . . . -1 -1 -1 . . . scaffold37148 WUBlastX LINE_RTE-BovB 10988 11209 41 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold149 WUBlastX LINE_RTE-X 151077 151196 82 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-X 151199 151300 28 + . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX LINE_RTE-BovB 12118 12453 62 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_Proto2 1888 2004 25 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 52057 52341 45 - . . . . . -1 -1 -1 . . . scaffold38310 WUBlastX LINE_RTE-X 17445 17741 43 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_RTE-X 42042 42287 58 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_RTE-X 257508 257867 75 + . . scaffold305 GLEAN mRNA 250174 258948 0.912097 + . ID=CGI_10019124; scaffold42190 WUBlastX DNA_Sola 55464 55805 105 - . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX DNA_TcMar-Tc1 124173 124550 82 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX DNA_TcMar-Tc1 136076 136288 103 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_L1-Tx1 595118 595672 49 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LTR_Copia 136463 137206 90 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_DIRS 118336 118632 37 - . . . . . -1 -1 -1 . . . scaffold37668 WUBlastX LTR_DIRS 36841 36894 22 + . . . . . -1 -1 -1 . . . scaffold42070 WUBlastX LINE_L1 67705 68070 70 - . . scaffold42070 GLEAN mRNA 63527 73059 0.466285 + . ID=CGI_10006078; scaffold419 WUBlastX LINE_CR1 1269985 1270104 94 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold419 WUBlastX LINE_L2 271639 271821 73 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_CR1-L2 268581 268922 71 - . . . . . -1 -1 -1 . . . scaffold309 WUBlastX LINE_L2 72591 72659 21 + . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_L2 181029 181601 44 - . . . . . -1 -1 -1 . . . scaffold36202 WUBlastX LTR_Ngaro 20512 20757 26 - . . scaffold36202 GLEAN mRNA 3245 23503 0.999232 + . ID=CGI_10001812; scaffold42 WUBlastX LINE_L2 205236 205343 37 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold363 WUBlastX LTR_Gypsy 205526 205618 20 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 20318 20506 62 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 28041 28229 62 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Gypsy 516918 517070 53 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_Harbinger 288503 288724 106 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Harbinger 284880 285107 60 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold177 WUBlastX DNA_Harbinger 285109 285282 42 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold43634 WUBlastX LTR_Gypsy 178476 178895 74 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Gypsy 279097 279420 89 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_L1 68387 68827 78 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1 175093 175860 40 + . . . . . -1 -1 -1 . . . scaffold1405 WUBlastX LINE_L1-Tx1 26964 27155 36 - . . . . . -1 -1 -1 . . . scaffold775 WUBlastX DNA_Kolobok-Hyd 115529 116221 49 - . . scaffold775 GLEAN mRNA 115517 116176 0.999137 - . ID=CGI_10006091; scaffold41730 WUBlastX DNA_TcMar-Marin 64238 64456 61 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_TcMar-Fot1 97968 98390 66 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_TcMar-Fot1 98390 98434 20 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_TcMar-Fot1 98428 98562 27 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_Penelope 504899 505480 37 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_Penelope 10982 11329 66 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Maverick 384317 385042 95 + . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_RTE-BovB 311920 312471 24 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold693 WUBlastX LINE_RTE-BovB 10046 10360 21 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold1599 WUBlastX LINE_RTE-X 1194780 1194989 72 + . . . . . -1 -1 -1 . . . C35134 WUBlastX DNA_TcMar-Tc2 18716 18829 47 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX DNA_Sola 522451 522744 115 - . . . . . -1 -1 -1 . . . C31366 WUBlastX LINE_L1-Tx1 5311 5661 65 + . . C31366 GLEAN mRNA 393 6299 0.999547 - . ID=CGI_10000739; scaffold163 WUBlastX LINE_L1-Tx1 562518 562832 80 + . . . . . -1 -1 -1 . . . scaffold1723 WUBlastX LINE_CR1 65209 65652 101 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_L2 827262 827612 30 - . . scaffold469 GLEAN mRNA 824216 847987 1 - . ID=CGI_10024698; scaffold593 WUBlastX LINE_CR1 67402 67716 143 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L2 432955 433545 94 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Merlin 1144449 1144625 110 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 478677 478862 31 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LTR_Gypsy 364707 364934 77 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LTR_Gypsy 141530 141904 41 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_Crypton 151562 151639 41 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_Crypton 152148 152291 76 + . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LTR_Ngaro 429638 429799 52 + . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold1862 WUBlastX LTR_Ngaro 693293 693541 108 - . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LTR_DIRS 65427 65759 76 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 538232 538540 93 + . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 130127 130693 82 - . . . . . -1 -1 -1 . . . scaffold38306 WUBlastX DNA_Harbinger 8854 9009 100 - . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold35900 WUBlastX DNA_Harbinger 16650 16964 96 + . . . . . -1 -1 -1 . . . scaffold43194 WUBlastX DNA_Kolobok-IS4 5890 6114 44 - . . . . . -1 -1 -1 . . . scaffold43194 WUBlastX DNA_Kolobok-IS4 6313 6447 39 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L2 174116 174304 52 - . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX LINE_Penelope 248 574 67 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX DNA_Kolobok 185525 185902 26 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX DNA_IS4EU 290050 290712 36 + . . . . . -1 -1 -1 . . . C27106 WUBlastX LINE_RTE-X 803 1081 68 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_Proto2 101065 101967 82 - . . scaffold499 GLEAN mRNA 88831 107103 0.615404 + . ID=CGI_10015763; scaffold39804 WUBlastX LINE_RTE-BovB 15080 15382 56 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_RTE-BovB 15366 15668 55 - . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_RTE-X 70889 71248 65 - . . scaffold43054 GLEAN mRNA 69561 76829 0.990615 + . ID=CGI_10008597; scaffold144 WUBlastX LINE_RTE-X 401298 401513 86 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 99426 99680 83 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_RTE-X 309022 309237 105 + . . scaffold1863 GLEAN mRNA 292710 321956 0.398552 - . ID=CGI_10016693; scaffold113 WUBlastX LINE_RTE-X 592759 593280 80 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 625163 625807 60 + . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_RTE-X 323223 323477 68 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_RTE-X 1217188 1217259 20 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1703 WUBlastX LTR_Ngaro 196629 196955 97 + . . . . . -1 -1 -1 . . . scaffold41902 WUBlastX LINE_L1-Tx1 11808 12110 81 - . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L1-Tx1 28943 29398 54 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 1096996 1097262 99 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_L1-Tx1 232060 232260 110 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_L1-Tx1 293581 293847 101 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LTR_Gypsy 87910 88032 20 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX DNA_TcMar-Tc1 195430 195831 86 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX DNA_Zator 145958 146143 106 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_L2 117952 118179 24 + . . scaffold976 GLEAN mRNA 100649 120076 0.999949 + . ID=CGI_10014006; scaffold101 WUBlastX LINE_CR1 614806 614898 35 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_CR1-L2 303338 303430 46 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX LTR_Ngaro 21138 21776 63 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Ngaro 950802 951227 63 - . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LTR_DIRS 18034 18408 98 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 1150896 1151759 95 + . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LTR_Gypsy 82741 83028 149 + . . . . . -1 -1 -1 . . . scaffold459 WUBlastX DNA_TcMar-Marin 137912 138256 40 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold896 WUBlastX DNA_IS4EU 229767 230138 98 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_Harbinger 40671 40826 61 - . . scaffold368 GLEAN mRNA 27692 45024 0.754759 - . ID=CGI_10018691; scaffold1172 WUBlastX DNA_Kolobok 136367 136552 85 - . . scaffold1172 GLEAN mRNA 136358 137015 0.533411 - . ID=CGI_10006910; scaffold1172 WUBlastX DNA_Kolobok 136367 136552 85 - . . scaffold1172 GLEAN mRNA 130831 145007 0.99998 + . ID=CGI_10006909; scaffold1259 WUBlastX LINE_L1-Tx1 19306 19485 147 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1163 WUBlastX LINE_L1-Tx1 17347 17703 77 - . . . . . -1 -1 -1 . . . scaffold1892 WUBlastX LINE_L1-Tx1 113014 113397 98 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LINE_L1-Tx1 26414 26716 106 - . . scaffold43804 GLEAN mRNA 23653 37787 0.649698 + . ID=CGI_10012548; scaffold40752 WUBlastX LINE_L1-Tx1 79562 80005 53 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_L1-Tx1 371200 371532 48 - . . scaffold730 GLEAN mRNA 359674 389340 0.587782 - . ID=CGI_10019895; scaffold1283 WUBlastX LINE_L1 191221 191379 32 + . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_L1 192025 192144 20 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LINE_L1 19306 19641 100 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold354 WUBlastX LINE_L1 1039680 1040621 54 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1 84344 85030 36 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_Penelope 143526 143921 65 - . . . . . -1 -1 -1 . . . scaffold34356 WUBlastX LTR_Ngaro 8327 8572 114 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 676243 676581 72 + . . . . . -1 -1 -1 . . . C25804 WUBlastX LINE_RTE-X 1264 1731 78 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-X 96639 96974 66 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_RTE-X 188534 188659 35 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold1571 WUBlastX LINE_RTE-X 3260 3538 55 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 33213 33401 85 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_PiggyBac 205957 206037 45 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 516221 516334 100 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 516352 516423 27 + . . . . . -1 -1 -1 . . . scaffold1242 WUBlastX LINE_RTE-BovB 1668 2057 77 - . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_RTE-BovB 500837 501001 45 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_Sola 326014 326154 44 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc1 732763 733059 32 + . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LTR_Gypsy 53943 54341 125 + . . . . . -1 -1 -1 . . . C22542 WUBlastX LINE_L1-Tx1 62 175 23 - . . . . . -1 -1 -1 . . . scaffold883 WUBlastX LINE_L2 3615 3731 24 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_CR1-L2 54241 54309 25 + . . . . . -1 -1 -1 . . . scaffold477 WUBlastX LTR_Copia 162741 162887 21 + . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LTR_Copia 97638 98849 97 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Academ 52988 53512 81 - . . scaffold524 GLEAN mRNA 52982 53245 0.999451 - . ID=CGI_10016597; scaffold1670 WUBlastX LTR_Gypsy-Cigr 505594 506205 130 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 225035 225952 92 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 61957 62874 99 - . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 87089 87190 25 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LTR_Ngaro 198247 198501 102 - . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LTR_Ngaro 12597 13049 115 + . . . . . -1 -1 -1 . . . scaffold42960 WUBlastX LTR_Ngaro 92338 92493 89 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 767403 768104 111 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LTR_Gypsy 703465 704454 25 + . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX RC_Helitron 3151 3408 81 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_hAT-Tip100 54621 54842 132 + . . scaffold266 GLEAN mRNA 46310 60131 0.998446 - . ID=CGI_10013346; C30820 WUBlastX DNA_Harbinger 927 1172 32 + . . . . . -1 -1 -1 . . . C30820 WUBlastX DNA_Harbinger 1192 1323 32 + . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LTR_Ngaro 3694 4245 71 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Ngaro 677805 678110 60 + . . . . . -1 -1 -1 . . . scaffold38654 WUBlastX LINE_Penelope 33332 33457 38 - . . . . . -1 -1 -1 . . . C25496 WUBlastX LINE_L1 1457 1753 124 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LINE_L1 194729 194890 66 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold35466 WUBlastX DNA_TcMar-Tc1 19146 19316 33 - . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_Penelope 82427 83278 66 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX DNA_Maverick 7448 7642 51 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 243938 244180 101 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_RTE-X 125061 125366 20 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-X 832126 832254 25 - . . scaffold271 GLEAN mRNA 809860 849502 0.997113 - . ID=CGI_10024500; scaffold599 WUBlastX LINE_RTE-X 375396 375824 103 - . . scaffold599 GLEAN mRNA 372668 382241 0.88989 - . ID=CGI_10021718; scaffold35180 WUBlastX LINE_RTE-X 9682 10221 81 + . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold546 WUBlastX LINE_RTE-X 36454 36750 89 - . . scaffold546 GLEAN mRNA 24963 48088 0.999351 + . ID=CGI_10020990; scaffold747 WUBlastX LINE_RTE-X 31767 31868 71 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LINE_RTE-X 124625 125059 71 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 281075 281587 94 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_DIRS 825340 825804 77 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_DIRS 825779 825898 32 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_TcMar-Ant1 308831 309397 134 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_CR1-L2 100122 100448 21 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_CR1 200054 200644 104 + . . scaffold1897 GLEAN mRNA 190471 249775 0.317357 - . ID=CGI_10020917; C21376 WUBlastX LTR_Gypsy 1177 1344 50 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_L2 454169 455152 26 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Gypsy 33644 34804 136 - . . scaffold40440 GLEAN mRNA 16484 36402 0.811713 + . ID=CGI_10004142; scaffold1144 WUBlastX LTR_Gypsy-Cigr 47510 47983 149 - . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L1 29376 29831 68 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-BovB 117143 117289 50 + . . . . . -1 -1 -1 . . . scaffold43396 WUBlastX LINE_Penelope 186430 186702 102 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold43396 WUBlastX LINE_Penelope 186734 186937 22 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold126 WUBlastX LTR_Ngaro 380423 380695 133 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_RTE-X 287235 287444 58 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 452261 452380 50 + . . . . . -1 -1 -1 . . . scaffold955 WUBlastX LINE_RTE-BovB 120029 120307 81 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold482 WUBlastX LINE_RTE-X 112751 113431 37 - . . scaffold482 GLEAN mRNA 106791 115709 0.887892 + . ID=CGI_10010996; scaffold43794 WUBlastX LINE_L1-Tx1 139316 139510 42 - . . . . . -1 -1 -1 . . . scaffold41212 WUBlastX LINE_L2 11819 11866 23 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LINE_L2 153163 153825 149 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold1578 WUBlastX LTR_Pao 65439 65573 21 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 68314 68400 25 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold41786 WUBlastX LINE_L2 57088 57231 22 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_En-Spm 254964 255041 28 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy 324086 324211 60 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L2 43445 43957 71 + . . scaffold40638 GLEAN mRNA 41609 59545 0.679878 - . ID=CGI_10004286; scaffold831 WUBlastX LTR_Ngaro 78503 79381 80 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Kolobok-IS4 251927 252268 135 - . . scaffold126 GLEAN mRNA 251015 257085 0.999956 + . ID=CGI_10019188; scaffold1477 WUBlastX DNA_Kolobok-IS4 37321 37365 23 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 90498 91556 98 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy 262603 262668 34 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L2 126432 126755 139 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_TcMar-Marin 10827 11165 175 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX DNA_P 202091 202393 63 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1-Tx1 935715 935858 33 - . . . . . -1 -1 -1 . . . scaffold35860 WUBlastX LINE_L1-Tx1 4878 5228 46 + . . . . . -1 -1 -1 . . . scaffold35860 WUBlastX LINE_L1-Tx1 5288 5584 79 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 179906 180490 55 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Maverick 644580 645416 117 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1074662 1074892 133 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold802 WUBlastX DNA_PiggyBac 29720 29875 25 - . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX DNA_PiggyBac 47700 47840 50 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LINE_RTE-X 298513 298629 39 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LINE_RTE-X 204416 204760 137 + . . scaffold396 GLEAN mRNA 196799 208805 0.948886 - . ID=CGI_10018103; C27882 WUBlastX LINE_RTE-X 2625 2813 66 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 441660 442283 72 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_RTE-BovB 97273 97437 77 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_RTE-BovB 97676 97840 26 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 986558 986971 80 + . . scaffold211 GLEAN mRNA 978840 989319 0.74015 + . ID=CGI_10026972; scaffold457 WUBlastX LINE_L1-Tx1 397900 398394 99 + . . . . . -1 -1 -1 . . . scaffold1028 WUBlastX LINE_L1-Tx1 63151 63651 76 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold1315 WUBlastX LINE_L1-Tx1 28179 28421 23 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; C37392 WUBlastX LINE_L1-Tx1 3 1037 545 - . . . . . -1 -1 -1 . . . C37392 WUBlastX LINE_L1-Tx1 1033 1626 292 - . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LINE_L1 34603 34749 39 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LTR_Ngaro 790348 790434 29 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_CR1-L2 125743 126855 803 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Pao 52909 53544 590 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Gypsy 204954 206273 479 - . . . . . -1 -1 -1 . . . scaffold450 WUBlastX DNA_hAT-Tip100 153229 154599 641 + . . . . . -1 -1 -1 . . . scaffold450 WUBlastX DNA_hAT-Tip100 154622 155221 298 + . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Pao 32811 33230 85 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LTR_Gypsy 33463 33588 22 - . . scaffold43008 GLEAN mRNA 18841 33811 0.999674 - . ID=CGI_10008458; scaffold616 WUBlastX LINE_RTE-BovB 314635 315513 338 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold593 WUBlastX LTR_DIRS 48760 49293 136 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_DIRS 49479 50345 462 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_DIRS 50327 51340 316 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Ngaro 545471 547003 977 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold288 WUBlastX LTR_Pao 168336 169019 68 + . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold1372 WUBlastX DNA_TcMar-Tc1 13672 13995 162 + . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_L2 126095 126718 72 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Ngaro 1134995 1135642 115 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold75 WUBlastX LTR_Gypsy 136433 136669 165 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX DNA_hAT-Ac 129957 130286 92 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX DNA_hAT-Ac 130799 131149 68 - . . . . . -1 -1 -1 . . . scaffold510 WUBlastX DNA_hAT-hATw 296620 297768 54 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX RC_Helitron 88272 88457 95 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX DNA_IS4EU 104079 104381 77 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold1009 WUBlastX DNA_TcMar-Marin 541678 541806 32 - . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_Harbinger 203168 203410 90 + . . . . . -1 -1 -1 . . . scaffold38310 WUBlastX DNA_Harbinger 44243 44680 147 + . . . . . -1 -1 -1 . . . scaffold322 WUBlastX DNA_P 201646 201954 108 + . . . . . -1 -1 -1 . . . scaffold227 WUBlastX LINE_Penelope 307284 307595 101 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Penelope 181024 181287 65 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 7292 7621 94 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-X 219666 219842 54 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 567893 568222 121 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX LINE_RTE-X 567893 568222 121 - . . scaffold1032 GLEAN mRNA 560649 579952 0.932371 + . ID=CGI_10021694; scaffold41900 WUBlastX LINE_RTE-BovB 121348 121569 45 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_RTE-X 458769 459245 101 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-X 305983 306306 69 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LINE_L1-Tx1 188487 188978 48 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_L2 431669 432679 655 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; scaffold730 WUBlastX LTR_Gypsy 208923 209294 335 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Gypsy 209423 209728 336 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Gypsy 209721 210299 368 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Gypsy 210391 210615 148 + . . . . . -1 -1 -1 . . . C34372 WUBlastX RC_Helitron 2927 3643 231 + . . . . . -1 -1 -1 . . . scaffold42046 WUBlastX LINE_RTE-X 14890 16650 833 - . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LINE_L2 6990 8234 833 - . . scaffold1708 GLEAN mRNA 6391 9576 0.777526 + . ID=CGI_10005574; scaffold1754 WUBlastX LTR_Ngaro 108551 109240 528 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX LTR_Ngaro 109222 109977 464 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 356597 356995 98 - . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 86392 87537 517 + . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX LTR_Ngaro 43351 44904 983 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LINE_L1-Tx1 97990 100035 889 - . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy 110604 111554 156 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Ngaro 84574 85422 654 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 701283 702908 877 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX RC_Helitron 192689 192979 146 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LTR_Gypsy 27185 27892 314 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L2 53500 53679 47 + . . scaffold753 GLEAN mRNA 36571 68340 0.958809 + . ID=CGI_10014195; scaffold1780 WUBlastX LINE_CR1 110602 110781 32 + . . scaffold1780 GLEAN mRNA 107008 115035 0.543 - . ID=CGI_10014549; scaffold1884 WUBlastX LINE_CR1-L2 143027 143593 49 - . . scaffold1884 GLEAN mRNA 133392 150395 0.998261 + . ID=CGI_10012014; C15012 WUBlastX LTR_Gypsy 2 277 177 - . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LTR_Gypsy 20557 20949 78 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 49328 49813 53 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Ngaro 351057 351149 42 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Ngaro 1518225 1519226 64 + . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LTR_Ngaro 1681 1986 149 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 425088 425405 76 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy 62764 63276 156 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 195424 195687 30 + . . . . . -1 -1 -1 . . . scaffold39220 WUBlastX LTR_Gypsy 1915 2346 177 - . . . . . -1 -1 -1 . . . scaffold35438 WUBlastX DNA_Harbinger 23550 23933 175 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX DNA_Harbinger 81288 81557 90 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_Kolobok-IS4 82247 82441 67 + . . scaffold43660 GLEAN mRNA 73296 94423 0.650662 - . ID=CGI_10011661; scaffold30718 WUBlastX DNA_TcMar-Fot1 4151 4804 169 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Kolobok 586778 587047 76 - . . scaffold1532 GLEAN mRNA 577371 590809 0.942324 - . ID=CGI_10028257; scaffold847 WUBlastX LINE_L1 683108 683365 104 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_L1 683313 683633 48 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L1 201877 202629 107 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_Rex-Babar 1224853 1225860 38 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_Proto2 157359 157511 33 + . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LTR_DIRS 113934 114719 97 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_DIRS 943454 943954 113 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_DIRS 944229 944402 119 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_DIRS 944378 946087 717 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 562188 562418 167 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 34897 38292 771 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 41925 45320 771 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_CR1-L2 510186 511268 589 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold1711 WUBlastX LINE_L1-Tx1 15561 17171 902 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_L1-Tx1 44979 46043 190 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 215804 216961 892 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 45007 45720 190 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L2 632156 632890 112 - . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_L2 86036 86413 112 - . . scaffold41560 GLEAN mRNA 83554 88131 1 - . ID=CGI_10005282; scaffold58 WUBlastX LTR_Pao 388282 388434 37 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_Merlin 571719 571913 33 + . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold266 WUBlastX LTR_Gypsy 220159 220632 177 - . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-BovB 33007 33117 73 + . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LTR_DIRS 213335 213877 68 - . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LTR_Ngaro 171524 172513 124 - . . scaffold510 GLEAN mRNA 163291 175111 0.785549 + . ID=CGI_10013769; scaffold1186 WUBlastX DNA_IS4EU 182009 182920 116 + . . . . . -1 -1 -1 . . . scaffold382 WUBlastX DNA_Kolobok-IS4 42766 43545 104 - . . scaffold382 GLEAN mRNA 40511 73048 0.0752347 + . ID=CGI_10004503; scaffold751 WUBlastX LINE_L2 500575 501303 173 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX DNA_TcMar-Tc2 215925 216770 95 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_L2 42236 42631 54 - . . . . . -1 -1 -1 . . . scaffold178 WUBlastX LINE_Penelope 103887 104150 72 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold1797 WUBlastX LINE_Penelope 56293 56793 118 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 296970 297938 172 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_PiggyBac 423668 424042 111 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_RTE-X 317334 317990 86 - . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LINE_RTE-X 65853 66374 121 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LTR_Gypsy 191406 193091 1174 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-BovB 1031893 1033008 612 + . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_RTE-X 62469 63494 437 - . . scaffold42840 GLEAN mRNA 60597 70020 0.754681 + . ID=CGI_10007833; scaffold42840 WUBlastX LINE_RTE-X 63487 64734 644 - . . scaffold42840 GLEAN mRNA 60597 70020 0.754681 + . ID=CGI_10007833; scaffold1328 WUBlastX DNA_Maverick 20212 20457 118 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1-Tx1 133748 135028 233 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1-Tx1 135553 136536 339 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1-Tx1 136542 137165 24 - . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX LTR_DIRS 10539 10805 237 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 271251 271403 63 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold1480 WUBlastX LINE_R2 157646 159403 898 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold1703 WUBlastX LINE_L1-Tx1 466865 467620 149 + . . scaffold1703 GLEAN mRNA 460683 476446 0.999324 - . ID=CGI_10023062; scaffold531 WUBlastX DNA_Academ 26356 26691 61 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold977 WUBlastX LTR_Gypsy 210392 210520 80 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 181425 181982 153 + . . . . . -1 -1 -1 . . . C24604 WUBlastX DNA_MuDR 409 762 116 - . . . . . -1 -1 -1 . . . scaffold41660 WUBlastX LINE_L1 113199 113663 53 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold354 WUBlastX LINE_L1-Tx1 391059 391565 121 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L1-Tx1 391781 391948 22 - . . . . . -1 -1 -1 . . . scaffold41650 WUBlastX LINE_CR1 3940 4992 139 - . . scaffold41650 GLEAN mRNA 2732 34982 0.998592 + . ID=CGI_10005337; scaffold1391 WUBlastX LINE_RTE-X 171812 172855 87 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-X 357762 358013 53 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc1 732453 732698 66 + . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LTR_Gypsy 137475 138767 362 - . . . . . -1 -1 -1 . . . scaffold41312 WUBlastX DNA_En-Spm 70696 72984 1234 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Pao 172245 172892 263 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold1589 WUBlastX LINE_L1-Tx1 177590 178078 106 + . . . . . -1 -1 -1 . . . scaffold1592 WUBlastX LINE_RTE-BovB 119493 119735 206 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 500526 501101 67 + . . . . . -1 -1 -1 . . . C31762 WUBlastX LINE_L1-Tx1 7802 8032 138 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 4988 5287 220 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 5841 6179 268 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 650761 652842 1367 + . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1189 WUBlastX LTR_Gypsy-Cigr 279542 280153 160 + . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy-Cigr 92769 93293 182 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LINE_CR1-L2 54119 54634 136 + . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX DNA_En-Spm 55324 56133 166 - . . scaffold40638 GLEAN mRNA 41609 59545 0.679878 - . ID=CGI_10004286; scaffold510 WUBlastX LTR_DIRS 355060 355503 170 - . . scaffold510 GLEAN mRNA 352980 361330 0.999948 - . ID=CGI_10013775; scaffold34742 WUBlastX DNA_Crypton 700 1413 115 - . . . . . -1 -1 -1 . . . scaffold635 WUBlastX DNA_Harbinger 107923 108210 63 - . . . . . -1 -1 -1 . . . scaffold635 WUBlastX DNA_Harbinger 108210 108371 30 - . . . . . -1 -1 -1 . . . scaffold37148 WUBlastX DNA_Harbinger 16185 16589 187 - . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold219 WUBlastX DNA_Harbinger 10029 10400 179 + . . . . . -1 -1 -1 . . . C31396 WUBlastX LINE_L1-Tx1 1286 1936 123 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L1 270724 271413 174 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_L2 75220 75516 28 + . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_TcMar-Tc1 348560 348958 118 + . . . . . -1 -1 -1 . . . scaffold38952 WUBlastX LINE_Penelope 35194 35751 177 - . . . . . -1 -1 -1 . . . scaffold1811 WUBlastX LINE_RTE-X 99673 99780 34 - . . . . . -1 -1 -1 . . . scaffold1811 WUBlastX LINE_RTE-X 101088 101351 79 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_RTE-X 366674 367102 122 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-BovB 1455 1676 25 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold332 WUBlastX LINE_RTE-X 175658 175741 20 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 91213 91371 23 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_L1-Tx1 1051515 1051673 24 - . . . . . -1 -1 -1 . . . C25678 WUBlastX LINE_L1-Tx1 1247 1825 125 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 296718 297455 151 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 298013 299254 636 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 299284 299811 28 - . . . . . -1 -1 -1 . . . scaffold40476 WUBlastX LTR_Gypsy 28066 29805 1382 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 98924 99376 79 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 685952 686188 70 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_Pao 66757 66912 90 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 151307 152074 694 - . . scaffold469 GLEAN mRNA 146084 157322 0.988922 - . ID=CGI_10024669; scaffold962 WUBlastX LTR_Gypsy 107581 107832 54 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX LTR_Pao 118079 118327 141 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LTR_Pao 471736 472002 212 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_CR1 22157 22786 103 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold189 WUBlastX LINE_L2 543037 543156 94 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L2 543159 543329 91 + . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_CR1-L2 631752 631928 86 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_CR1 108340 108639 67 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy-Cigr 200333 200734 159 - . . . . . -1 -1 -1 . . . scaffold41008 WUBlastX LTR_Ngaro 50128 50826 162 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 615571 616455 96 - . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX LTR_Ngaro 43197 43571 82 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold565 WUBlastX LTR_Ngaro 936 1223 183 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 395798 396871 195 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LTR_Copia 396579 396680 23 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_R2-Hero 69324 69617 129 - . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_R2-Hero 115391 116044 153 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LTR_Ngaro 243375 243488 46 + . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_RTE-X 134484 134654 91 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_RTE-X 576198 576365 70 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_RTE-X 576374 576736 70 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_RTE-X 576736 576882 57 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 500681 501157 48 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-BovB 338446 338550 48 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1-Tx1 843582 843857 87 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy-Cigr 170978 172444 596 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold97 WUBlastX LINE_L1 102319 104190 839 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-BovB 518911 519882 817 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-BovB 519857 520801 672 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LINE_L2 299782 300300 177 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_CR1-L2 71690 71965 107 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_DRE 105501 105587 22 + . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX LTR_Ngaro 42556 43146 54 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold550 WUBlastX LTR_Ngaro 312636 312686 29 - . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX DNA_Crypton 9047 9418 100 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_IS4EU 18206 18349 39 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_Penelope 298080 298712 186 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_Maverick 637035 637505 198 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 51724 51912 41 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LINE_RTE-X 3818 4072 51 + . . . . . -1 -1 -1 . . . scaffold308 WUBlastX LINE_RTE-X 111432 111731 103 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX LINE_RTE-X 111919 112170 83 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_TcMar-Tc1 19985 20446 115 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX DNA_Sola 437348 438127 106 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy-Cigr 171257 173533 1084 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LTR_Gypsy-Cigr 173484 173930 432 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1532 WUBlastX LTR_Gypsy 368010 368231 86 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 275060 275338 139 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 275710 276279 368 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 276312 276533 128 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 277263 277718 124 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 427844 431401 1118 - . . scaffold204 GLEAN mRNA 420205 431489 0.478476 - . ID=CGI_10026107; scaffold1554 WUBlastX LTR_Gypsy-Troyk 376793 377047 142 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Gypsy 223406 224317 244 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_hAT-Tip100 112339 112587 64 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_hAT-Tip100 112757 112963 123 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_CR1-L2 36024 36494 206 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_CR1 176311 176658 139 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_IS4EU 305918 306124 92 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_IS4EU 306939 307097 47 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LTR_Gypsy 222516 222587 21 + . . . . . -1 -1 -1 . . . scaffold444 WUBlastX DNA_Maverick 2170 2547 202 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 774029 774130 46 - . . scaffold1189 GLEAN mRNA 763568 774596 0.392072 + . ID=CGI_10023832; scaffold42770 WUBlastX LTR_Gypsy-Troyk 45423 45968 93 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1-Tx1 777763 778041 50 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_L1-Tx1 385932 386654 193 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy-Cigr 566947 567576 108 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy-Cigr 566947 567576 108 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold150 WUBlastX LTR_Pao 444051 445028 804 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LTR_Gypsy 375214 375879 49 - . . . . . -1 -1 -1 . . . scaffold1290 WUBlastX LTR_Gypsy 6605 10072 1672 - . . . . . -1 -1 -1 . . . scaffold37430 WUBlastX LTR_Pao 40634 41521 214 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold1732 WUBlastX LTR_Pao 31574 31738 129 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Pao 33535 33576 22 + . . . . . -1 -1 -1 . . . scaffold827 WUBlastX LINE_CR1 47374 47535 31 - . . . . . -1 -1 -1 . . . C30292 WUBlastX LTR_Ngaro 475 1440 158 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS? 587275 587400 21 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS? 587436 587723 203 + . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LTR_DIRS 462766 463644 48 - . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LTR_DIRS 463686 463982 96 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_DIRS 549684 550001 172 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 398261 398632 163 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_Penelope 628785 629063 48 + . . . . . -1 -1 -1 . . . scaffold49 WUBlastX LINE_RTE-X 315199 315594 150 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L1-Tx1 888887 889363 107 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold419 WUBlastX LTR_Gypsy 665742 666506 329 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 730283 730885 101 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 463447 464121 452 + . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Pao 61396 61671 27 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_L2 242280 242792 150 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LTR_DIRS? 123188 123292 75 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_R2-Hero 82415 82534 62 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_R2-Hero 83418 83564 40 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_Harbinger 257205 257333 69 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_Harbinger 257559 257900 174 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_Penelope 284261 284398 23 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok 151157 151348 47 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold337 WUBlastX LINE_L1-Tx1 1638035 1638316 241 + . . . . . -1 -1 -1 . . . scaffold1492 WUBlastX LINE_L1-Tx1 83477 83803 41 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L1-Tx1 888875 889522 68 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold469 WUBlastX LTR_Pao 622979 623332 144 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 623338 623568 126 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold760 WUBlastX LINE_L1-Tx1 127785 130661 1616 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold1532 WUBlastX LTR_Gypsy-Troyk 1103011 1104132 1176 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy-Troyk 1101624 1102529 654 - . . . . . -1 -1 -1 . . . scaffold37430 WUBlastX LTR_Pao 38217 38474 229 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold36034 WUBlastX LTR_Copia 16527 18395 821 - . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LTR_DIRS 316936 317772 609 - . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LTR_DIRS 317745 319139 1212 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_DIRS 853426 853851 200 + . . . . . -1 -1 -1 . . . C29576 WUBlastX LTR_DIRS 890 1219 85 - . . . . . -1 -1 -1 . . . C31982 WUBlastX LTR_Ngaro 8846 9061 71 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 82480 82584 78 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 82593 82694 72 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 83749 83865 22 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX RC_Helitron 271580 272017 150 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_hAT-Ac 238618 238761 56 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy 185034 185531 134 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_RTE-BovB 255043 255156 57 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_RTE-X 83218 83736 131 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 84284 84376 42 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold1385 WUBlastX LINE_L1-Tx1 329991 330266 107 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LINE_L1-Tx1 18573 18755 61 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold41604 WUBlastX LINE_L1-Tx1 61711 61824 29 - . . . . . -1 -1 -1 . . . scaffold41604 WUBlastX LINE_L1-Tx1 61821 62546 159 - . . . . . -1 -1 -1 . . . scaffold41604 WUBlastX LINE_L1-Tx1 62626 64464 1074 - . . . . . -1 -1 -1 . . . scaffold41604 WUBlastX LINE_L1-Tx1 65091 65615 272 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 256440 258368 1255 - . . . . . -1 -1 -1 . . . C29506 WUBlastX LINE_L1-Tx1 1466 3553 794 - . . . . . -1 -1 -1 . . . C29506 WUBlastX LINE_L1-Tx1 3558 5111 805 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_CR1 579439 580083 42 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_CR1-L2 146528 146761 147 + . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_CR1 40973 41743 192 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LTR_Ngaro 110632 111444 201 - . . . . . -1 -1 -1 . . . scaffold776 WUBlastX LTR_Ngaro 13740 14300 228 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_DIRS 116324 117271 138 + . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX DNA_IS4EU 285034 285405 202 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX DNA_hAT-hATw 125813 126244 45 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Ac 159399 159515 51 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L1 1184100 1184573 233 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1 111758 112291 84 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1 112891 113067 47 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 613774 614577 163 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LINE_RTE-X 2174 3982 89 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_RTE-X 335457 335618 66 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_RTE-X 335823 336257 93 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy-Cigr 106629 107846 505 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_CR1-L2 75191 75997 204 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_hAT 189711 189911 59 + . . scaffold626 GLEAN mRNA 185398 190939 0.996819 + . ID=CGI_10019986; scaffold1647 WUBlastX LTR_Gypsy 101004 101717 22 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_Kolobok-IS4 16352 16534 41 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_IS4EU 89322 90167 149 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold610 WUBlastX LTR_Gypsy 583545 583982 118 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold1143 WUBlastX DNA_MuDR 29472 29909 43 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 52529 52990 118 - . . . . . -1 -1 -1 . . . scaffold837 WUBlastX DNA_TcMar-Tc1 21229 21600 196 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_L1-Tx1 436209 436610 143 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_Gypsy 830367 830735 20 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 413925 414158 113 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 414133 415992 1189 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 415991 416956 342 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_RTE-BovB 335448 335516 40 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 335522 335719 100 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 335710 335952 247 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 335952 336188 281 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 336200 337837 1477 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold39470 WUBlastX LINE_CR1 44219 47458 2057 + . . scaffold39470 GLEAN mRNA 37603 51823 0.681651 + . ID=CGI_10003380; scaffold332 WUBlastX LTR_Gypsy 628708 631497 2135 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-BovB 303364 303600 276 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold714 WUBlastX DNA_IS4EU 217574 217789 151 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX DNA_Kolobok-IS4 42794 43606 248 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX DNA_TcMar-Pogo 97065 97274 81 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 422753 423100 173 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 1082672 1082869 103 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; C28286 WUBlastX DNA_TcMar-Tc1 2347 2778 149 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_CR1-L2 357596 358030 246 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 127655 128140 151 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 231146 231256 26 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX DNA_Kolobok 16227 16373 29 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX DNA_Kolobok 17167 17313 52 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX DNA_Kolobok 17439 17588 101 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_Penelope 179873 180394 181 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LINE_L1 57819 57962 37 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_RTE-X 114788 115090 41 - . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 87365 87835 189 - . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 89309 89425 65 - . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 19703 20134 146 + . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 20128 20877 347 + . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 20873 21346 365 + . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 21343 22005 510 + . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 21999 22631 306 + . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 23201 24775 567 + . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 24772 24927 30 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 157958 158197 70 - . . . . . -1 -1 -1 . . . scaffold29316 WUBlastX LINE_Jockey 4551 5156 54 - . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LTR_DIRS 213007 213168 31 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 319210 319602 147 - . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LINE_L1-Tx1 327279 328280 198 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LINE_L1-Tx1 55751 55900 33 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_Penelope 269734 270063 136 + . . . . . -1 -1 -1 . . . scaffold1335 WUBlastX LINE_Penelope 12438 12554 32 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold1525 WUBlastX LINE_RTE-X 243798 244352 236 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 677652 678026 400 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 679809 680264 265 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy 2629 3210 107 - . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LTR_Gypsy 71366 72145 203 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LTR_Gypsy 72270 72887 85 + . . . . . -1 -1 -1 . . . scaffold1669 WUBlastX DNA_En-Spm 14623 14808 133 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_hAT-Ac 339214 339474 78 - . . scaffold90 GLEAN mRNA 319674 344915 0.945886 + . ID=CGI_10015172; scaffold38492 WUBlastX DNA_hAT-Tip100 53604 54254 189 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_P 414453 415931 210 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_Kolobok 102876 103322 283 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_Proto2 197368 197826 142 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX DNA_Sola 114395 116068 251 + . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Pao 8739 9302 207 + . . . . . -1 -1 -1 . . . scaffold1161 WUBlastX LTR_Gypsy 23674 26073 2004 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX DNA_hAT 176516 177865 286 + . . scaffold149 GLEAN mRNA 176447 178183 0.998924 + . ID=CGI_10025294; scaffold1222 WUBlastX LINE_CR1-L2 195533 196501 224 - . . scaffold1222 GLEAN mRNA 181889 211274 0.999614 - . ID=CGI_10016240; scaffold97 WUBlastX LTR_Gypsy 21021 21221 63 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Ngaro 466553 466945 136 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 64012 64128 42 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold43200 WUBlastX LINE_L1-Tx1 85753 85944 128 - . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_L1-Tx1 85923 86243 172 - . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_L1 14850 15206 35 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1-Tx1 143889 144095 59 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_Penelope 188028 188408 103 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_Penelope 220292 220558 44 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-BovB 368578 369453 245 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1-L2 585618 586319 283 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 301442 301912 199 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LINE_L2 260047 261450 235 + . . scaffold1792 GLEAN mRNA 252899 271519 0.999949 - . ID=CGI_10012749; scaffold42402 WUBlastX LTR_Gypsy 20282 20506 35 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Gypsy 209363 209689 117 + . . . . . -1 -1 -1 . . . C28002 WUBlastX DNA_Harbinger 964 1812 272 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 17277 17450 121 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 18530 18625 49 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_Penelope 62558 63046 285 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 1561216 1561263 22 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 35530 35643 32 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 381458 382123 108 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_CR1 257419 257826 22 + . . . . . -1 -1 -1 . . . scaffold36118 WUBlastX LTR_Gypsy 1084 1482 40 - . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LTR_Ngaro 35692 35877 107 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Gypsy 30638 31765 297 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX RC_Helitron 238536 239303 263 + . . scaffold59 GLEAN mRNA 230821 243525 0.988711 - . ID=CGI_10011278; scaffold101 WUBlastX DNA_MuDR 677388 677987 191 + . . scaffold101 GLEAN mRNA 676539 710927 0.888019 - . ID=CGI_10021653; scaffold502 WUBlastX LINE_RTE-X 147060 147425 35 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 20579 20917 109 + . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_L1-Tx1 85018 85221 48 - . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_L1-Tx1 87308 87469 41 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_CR1 485189 486325 272 - . . . . . -1 -1 -1 . . . C36680 WUBlastX LINE_CR1 8507 8938 51 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold448 WUBlastX LTR_DIRS 992181 992633 306 - . . . . . -1 -1 -1 . . . scaffold1103 WUBlastX LTR_Ngaro 21693 22316 312 - . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LTR_Gypsy 18371 19255 335 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_L1-Tx1 313568 314380 253 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok 377573 377923 67 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok 379937 380224 22 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_Maverick 12283 12798 311 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 189398 189982 322 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Ngaro 1132330 1133034 223 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold1785 WUBlastX DNA_TcMar-Tc1 623573 624568 140 + . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX LINE_CR1 223121 223240 27 - . . scaffold1210 GLEAN mRNA 223162 227015 0.996444 + . ID=CGI_10014606; scaffold43446 WUBlastX LINE_CR1 200177 201655 132 + . . scaffold43446 GLEAN mRNA 175111 204349 0.996568 - . ID=CGI_10010404; scaffold162 WUBlastX DNA_hAT 33870 34043 74 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_hAT 34196 34804 279 - . . . . . -1 -1 -1 . . . C34562 WUBlastX LTR_Ngaro 1933 2814 225 + . . . . . -1 -1 -1 . . . C34562 WUBlastX LTR_Ngaro 3031 3180 100 + . . . . . -1 -1 -1 . . . scaffold33638 WUBlastX DNA_IS4EU 3672 4034 114 + . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L1 3222 3614 24 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Maverick 399885 400058 78 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Maverick 400024 400740 223 - . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy 51157 51336 35 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 281998 282780 221 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L2 26979 27122 29 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Crypton 518190 518420 22 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Crypton 518359 518967 277 + . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LTR_DIRS 6580 6774 102 + . . . . . -1 -1 -1 . . . scaffold1669 WUBlastX DNA_En-Spm 13788 14624 160 + . . . . . -1 -1 -1 . . . scaffold35466 WUBlastX DNA_TcMar-Tc1 17876 17986 61 - . . . . . -1 -1 -1 . . . scaffold38108 WUBlastX LINE_L1-Tx1 38289 38852 157 + . . . . . -1 -1 -1 . . . scaffold38108 WUBlastX LINE_L1-Tx1 39505 39639 25 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX DNA_Maverick 120449 120826 238 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 383579 383815 81 + . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LTR_Ngaro 126365 126700 137 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LTR_Ngaro 126682 127032 138 - . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX LTR_Gypsy 11802 12179 39 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L2 512617 512727 48 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold1131 WUBlastX LINE_L1 155854 155973 69 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1 156783 157097 118 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Gypsy 540029 540565 405 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 38713 39249 203 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Gypsy-Cigr 211235 211552 57 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 356453 356710 47 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX DNA_TcMar-Tc1 154753 155025 109 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-X 1620 2042 36 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-X 1997 2305 122 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Maverick 1456457 1456555 49 + . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LTR_DIRS 145429 145917 268 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold376 WUBlastX DNA_TcMar-Tc1 330289 330744 213 + . . . . . -1 -1 -1 . . . C25328 WUBlastX LINE_CR1-L2 997 1476 221 - . . . . . -1 -1 -1 . . . scaffold37722 WUBlastX LINE_L2 43375 43827 76 + . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_L1 29587 29682 43 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_RTE-X 191097 191732 156 + . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_L1-Tx1 7394 7672 36 + . . . . . -1 -1 -1 . . . scaffold1334 WUBlastX LINE_Penelope 7620 9077 231 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold1352 WUBlastX LINE_RTE-X 404175 404543 114 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold42674 WUBlastX LINE_L1-Tx1 88754 89440 319 + . . scaffold42674 GLEAN mRNA 75951 89776 0.488756 + . ID=CGI_10007441; scaffold53 WUBlastX LINE_CR1 1152409 1152897 345 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 40815 40931 68 - . . . . . -1 -1 -1 . . . scaffold40808 WUBlastX LTR_DIRS 81000 81512 180 + . . . . . -1 -1 -1 . . . scaffold35970 WUBlastX LTR_Gypsy 27170 27325 43 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_Gypsy 120615 121142 199 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120615 121142 199 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold433 WUBlastX LINE_R2-Hero 675601 675753 72 - . . . . . -1 -1 -1 . . . scaffold1260 WUBlastX DNA_Harbinger 90181 90903 353 - . . . . . -1 -1 -1 . . . scaffold41390 WUBlastX DNA_TcMar-Pogo 100616 101017 237 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Maverick 213987 214748 358 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Maverick 1091444 1091887 212 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_PiggyBac 454728 455354 154 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 84773 84973 72 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 86644 87192 54 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_hAT-Ac 62717 63469 243 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_hAT-Ac 64252 64494 124 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_hAT-Ac 64494 64580 43 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 88767 89012 65 - . . . . . -1 -1 -1 . . . scaffold350 WUBlastX DNA_Academ 1816 2337 89 - . . scaffold350 GLEAN mRNA 1105 3206 0.996578 - . ID=CGI_10000780; scaffold1155 WUBlastX LTR_Gypsy 184360 185016 275 + . . . . . -1 -1 -1 . . . scaffold38448 WUBlastX DNA_Helitron 48924 50276 209 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 80289 80993 229 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 81000 81119 63 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 81116 81445 138 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX DNA_TcMar-Marin 22448 22795 189 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_L1-Tx1 390349 390708 163 + . . scaffold1221 GLEAN mRNA 352551 403939 0.753368 - . ID=CGI_10019745; scaffold1221 WUBlastX LINE_L1-Tx1 390749 391723 85 + . . scaffold1221 GLEAN mRNA 352551 403939 0.753368 - . ID=CGI_10019745; scaffold53 WUBlastX DNA_Maverick 400874 400981 30 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Maverick 400901 401005 59 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX DNA_Sola 225750 225983 56 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_CR1 51652 52650 385 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Helitron 150305 151396 175 - . . scaffold550 GLEAN mRNA 134556 152020 0.969581 - . ID=CGI_10012490; scaffold847 WUBlastX RC_Helitron 439398 439457 20 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold42210 WUBlastX LINE_L1-Tx1 101065 101865 254 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold591 WUBlastX DNA_PiggyBac 534664 535215 124 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_PiggyBac 535250 535741 286 - . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LINE_RTE-X 67908 68738 344 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 349847 350014 30 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 350270 350437 55 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 127174 127656 262 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy 601999 602385 48 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_TcMar-Tc1 239416 239589 59 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 977977 978225 27 - . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX DNA_hAT 216944 217096 40 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold36748 WUBlastX DNA_Harbinger 11782 12651 383 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_Merlin 168185 169081 353 + . . scaffold22 GLEAN mRNA 157108 183005 0.71876 + . ID=CGI_10028831; scaffold616 WUBlastX LINE_RTE-BovB 314416 315192 190 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold43630 WUBlastX LINE_CR1 283774 284025 153 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 107271 107750 60 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LTR_Ngaro 382615 382887 108 + . . . . . -1 -1 -1 . . . scaffold33842 WUBlastX LINE_L1-Tx1 8131 8895 200 - . . . . . -1 -1 -1 . . . scaffold33842 WUBlastX LINE_L1-Tx1 9013 9162 64 - . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_L1-Tx1 84970 85173 23 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L2 365657 366271 439 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Gypsy 178852 179337 165 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 171441 172181 509 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_TcMar-Tc1 549713 550735 420 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-X 26544 26714 63 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_Sola 225940 226227 114 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_RTE-X 83613 83753 26 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1386 WUBlastX DNA_TcMar-Tc1 81833 82861 430 - . . . . . -1 -1 -1 . . . C35794 WUBlastX LTR_Pao 11740 12141 66 + . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LINE_L1 87186 87323 32 - . . . . . -1 -1 -1 . . . C33244 WUBlastX LTR_Gypsy 397 1725 468 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1-Tx1 161408 161584 24 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1-Tx1 161750 161935 28 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Gypsy 540813 541175 162 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 88191 88247 44 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_Gypsy 240260 240661 205 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 241500 241607 77 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1715 WUBlastX LINE_Penelope 328038 328265 36 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold772 WUBlastX LTR_Ngaro 339718 340446 279 + . . scaffold772 GLEAN mRNA 336765 344045 0.544674 + . ID=CGI_10016594; scaffold3 WUBlastX LTR_Gypsy 1004475 1004582 74 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX DNA_Harbinger 150042 150239 37 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Harbinger 852502 852699 37 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L2 213681 214076 190 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_hAT-Tip100 77626 77973 87 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 84015 84410 191 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold126 WUBlastX LINE_RTE-BovB 106117 107460 453 + . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_RTE-X 125702 125800 56 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold1221 WUBlastX DNA_Zator 218164 218559 65 - . . . . . -1 -1 -1 . . . scaffold65 WUBlastX LINE_RTE-X 127020 127097 41 + . . . . . -1 -1 -1 . . . scaffold65 WUBlastX LINE_RTE-X 127184 128197 404 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 1621613 1622032 105 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1-Tx1 170169 170567 145 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold240 WUBlastX LTR_Gypsy-Cigr 125204 125965 513 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 96794 97963 339 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 708327 708434 31 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_RTE-BovB 200906 202093 465 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1-Tx1 209031 209609 375 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold588 WUBlastX LINE_RTE-X 410722 411051 61 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 125181 126122 571 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1 115358 115444 86 + . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX DNA_hAT 128276 129478 537 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold1104 WUBlastX LINE_CR1 308273 309019 223 + . . . . . -1 -1 -1 . . . scaffold470 WUBlastX LTR_Gypsy 1227 1295 36 + . . . . . -1 -1 -1 . . . scaffold1838 WUBlastX LINE_RTE-X 335735 336367 187 - . . scaffold1838 GLEAN mRNA 332958 349598 0.563165 + . ID=CGI_10014264; scaffold1571 WUBlastX LTR_Pao 272427 272657 121 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_RTE-X 310601 311422 318 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy-Cigr 465199 465603 32 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 61425 62300 600 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 267339 267590 49 - . . . . . -1 -1 -1 . . . scaffold937 WUBlastX LINE_Penelope 2258 2515 160 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 403946 404611 299 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 405963 406394 89 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy 26133 26486 57 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Ngaro 137869 138603 222 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1 162371 162694 112 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-X 344700 345068 38 + . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LTR_DIRS 198999 199436 41 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold564 WUBlastX LINE_CR1-L2 223261 223413 40 + . . . . . -1 -1 -1 . . . scaffold564 WUBlastX LINE_CR1-L2 224355 224759 52 + . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX LINE_CR1-L2 237017 237760 293 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold1195 WUBlastX LINE_L1 287269 287814 261 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_L1-Tx1 144310 145356 478 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Academ 187173 188795 302 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 264563 264733 22 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_L1-Tx1 225149 226186 307 + . . . . . -1 -1 -1 . . . C30072 WUBlastX LINE_RTE-X 4427 4690 164 + . . . . . -1 -1 -1 . . . C30072 WUBlastX LINE_RTE-X 4704 5507 289 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Harbinger 54909 55277 248 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 56495 56614 133 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 57209 57577 119 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold38510 WUBlastX DNA_Sola 31148 31480 120 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold531 WUBlastX LTR_Gypsy 353802 354326 128 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 354319 355434 482 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX DNA_Kolobok 229601 230119 272 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 230235 230435 127 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 230515 230892 88 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 231169 231339 115 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold1383 WUBlastX LINE_L1 11365 11667 34 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 811999 813102 251 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 813152 814081 223 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 623577 624167 124 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold338 WUBlastX LINE_L2 51525 51881 88 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 51845 52501 375 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 52519 52773 84 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold1532 WUBlastX LTR_Gypsy 601565 603133 399 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 591359 591748 232 - . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_RTE-BovB 280546 281070 361 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-X 200993 201376 142 - . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX DNA_hAT 16516 16734 93 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 16516 16734 93 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 14621 15031 109 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 14621 15031 109 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 15414 15590 100 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 15414 15590 100 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold502 WUBlastX LTR_Gypsy 473309 473608 216 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 474006 474293 92 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy-Cigr 329359 330177 416 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 217759 218271 154 + . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_DIRS 114867 116066 360 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 122048 122224 117 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_RTE-X 101650 101916 146 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_RTE-X 101921 102439 289 - . . . . . -1 -1 -1 . . . scaffold344 WUBlastX LINE_RTE-X 40965 42443 533 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 232885 233097 129 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 234025 234228 100 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_L1-Tx1 53206 53784 131 + . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX LTR_Ngaro 30697 31179 224 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold36 WUBlastX LTR_Gypsy 2924 3160 49 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold43786 WUBlastX LINE_L1-Tx1 249436 250491 368 - . . scaffold43786 GLEAN mRNA 234476 275282 0.999342 - . ID=CGI_10012356; scaffold610 WUBlastX LTR_Gypsy-Cigr 568220 568705 39 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy-Cigr 568894 569202 183 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy-Cigr 569350 569517 30 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold1670 WUBlastX LTR_Gypsy 226549 226629 26 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_L1-Tx1 243924 243995 23 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold1646 WUBlastX LTR_Gypsy-Cigr 154267 154761 117 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1-Tx1 156625 157083 142 - . . . . . -1 -1 -1 . . . C24036 WUBlastX LTR_Gypsy 2 1186 765 + . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX LTR_Gypsy 53072 54319 207 - . . scaffold1806 GLEAN mRNA 45331 76950 0.994674 + . ID=CGI_10006156; scaffold22 WUBlastX LINE_L1-Tx1 587926 588738 434 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 588572 589627 151 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_hAT-Tip100 49230 51014 668 - . . . . . -1 -1 -1 . . . scaffold1181 WUBlastX LTR_Ngaro 36202 37749 663 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LTR_Gypsy 166458 166694 77 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 105092 105175 39 + . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L1 3190 3447 97 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LINE_RTE-X 489622 491307 514 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LINE_RTE-X 491390 491524 48 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 60277 61425 748 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_L2 170322 170957 198 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1-Tx1 464703 465023 134 - . . scaffold305 GLEAN mRNA 449845 466663 0.999234 + . ID=CGI_10019141; scaffold305 WUBlastX LINE_L1-Tx1 464990 466078 520 - . . scaffold305 GLEAN mRNA 449845 466663 0.999234 + . ID=CGI_10019141; scaffold750 WUBlastX LTR_Gypsy 497006 497509 23 - . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX DNA_En-Spm 51429 52019 112 + . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX DNA_IS4EU 47785 48318 100 + . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX DNA_IS4EU 48371 49276 641 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 189389 189721 53 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold1774 WUBlastX DNA_Kolobok 47754 47813 25 + . . scaffold1774 GLEAN mRNA 36391 50061 0.563353 + . ID=CGI_10006376; scaffold1774 WUBlastX DNA_Kolobok 49027 49986 578 + . . scaffold1774 GLEAN mRNA 36391 50061 0.563353 + . ID=CGI_10006376; scaffold667 WUBlastX LTR_Gypsy 89922 90269 305 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy 92026 92373 76 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_L1-Tx1 356364 358343 477 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Ngaro 246290 247744 711 + . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LINE_RTE-X 3051 3908 176 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 378097 379374 475 - . . scaffold57 GLEAN mRNA 361110 382565 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_RTE-X 378097 379374 475 - . . scaffold57 GLEAN mRNA 361168 396087 0.322076 - . ID=CGI_10020553; scaffold57 WUBlastX LINE_RTE-X 379406 379696 221 - . . scaffold57 GLEAN mRNA 361110 382565 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_RTE-X 379406 379696 221 - . . scaffold57 GLEAN mRNA 361168 396087 0.322076 - . ID=CGI_10020553; scaffold412 WUBlastX LINE_CR1 445084 446205 861 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_CR1-L2 673294 673617 59 - . . scaffold6 GLEAN mRNA 669450 677435 1 + . ID=CGI_10022331; scaffold1581 WUBlastX DNA_IS4EU 27429 27731 115 + . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX DNA_IS4EU 27906 28919 732 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-BovB 130067 131392 831 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_RTE-X 69230 70936 722 - . . . . . -1 -1 -1 . . . scaffold344 WUBlastX LTR_Pao 37545 38513 936 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_L1-Tx1 711819 711917 22 + . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_L1-Tx1 8493 9623 385 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 33533 33712 86 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Merlin 1144455 1144814 58 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Copia 133449 133718 38 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_Penelope 755569 755745 72 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_L2 103977 104471 55 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_CR1 927311 927484 20 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_CR1 1070260 1070301 24 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_CR1 179544 179702 49 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L2 611888 612049 28 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold1213 WUBlastX LINE_Rex-Babar 675135 675422 27 + . . . . . -1 -1 -1 . . . scaffold371 WUBlastX LINE_Rex-Babar 38087 38140 21 + . . . . . -1 -1 -1 . . . C35952 WUBlastX LINE_L2 3484 3567 20 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold1901 WUBlastX LINE_L2 409943 410437 36 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_En-Spm 1089328 1089612 65 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_L2 181588 181734 33 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 615296 615400 34 - . . . . . -1 -1 -1 . . . scaffold817 WUBlastX LTR_Gypsy 168163 168255 89 + . . . . . -1 -1 -1 . . . scaffold1006 WUBlastX LTR_Gypsy 40044 40376 74 - . . . . . -1 -1 -1 . . . scaffold1333 WUBlastX DNA_IS4EU 40740 40910 23 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_IS4EU 246172 246408 67 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX DNA_IS4EU 234561 234677 24 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_Jockey 484435 484974 53 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_I 105442 105546 23 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_hAT-Ac 1538400 1538654 70 - . . scaffold102 GLEAN mRNA 1532525 1541174 0.3501 - . ID=CGI_10028505; scaffold801 WUBlastX LTR_Gypsy 840892 841263 54 - . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LTR_Gypsy 39230 39373 27 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 96907 97101 57 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold35640 WUBlastX LTR_Gypsy 13815 13943 32 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LTR_Gypsy 157467 157643 60 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX DNA_Harbinger 177338 177475 20 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_Harbinger 137804 137941 20 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold1698 WUBlastX DNA_Harbinger 225639 225776 20 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L2 104180 104284 30 - . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Jockey 25342 25476 60 - . . . . . -1 -1 -1 . . . C28574 WUBlastX LINE_I 4207 4251 20 + . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LINE_L1-Tx1 9200 9481 27 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 25983 26174 92 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold126 WUBlastX LINE_L1 236639 236707 43 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 568991 569308 77 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1 10230 10505 42 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1750 WUBlastX LINE_Penelope 577993 578325 56 + . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_P 29613 29945 42 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold190 WUBlastX DNA_P 307865 308035 42 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 104538 104948 41 + . . . . . -1 -1 -1 . . . scaffold559 WUBlastX DNA_P 36254 36721 46 + . . scaffold559 GLEAN mRNA 36227 37772 1 + . ID=CGI_10003340; scaffold149 WUBlastX DNA_TcMar-Marin 1037202 1037396 25 - . . scaffold149 GLEAN mRNA 1029286 1055668 0.813477 - . ID=CGI_10025339; scaffold1221 WUBlastX DNA_TcMar-Marin 172402 172629 44 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX DNA_TcMar-Marin 7664 7873 37 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_PiggyBac 632963 633046 58 - . . . . . -1 -1 -1 . . . scaffold966 WUBlastX LINE_RTE-BovB 8363 8596 37 + . . . . . -1 -1 -1 . . . scaffold966 WUBlastX LINE_RTE-BovB 8604 8651 24 + . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LINE_RTE-BovB 65546 65917 82 + . . . . . -1 -1 -1 . . . scaffold1400 WUBlastX LINE_RTE-BovB 2838 2888 20 + . . . . . -1 -1 -1 . . . scaffold1881 WUBlastX LINE_RTE-X 117700 117975 48 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_RTE-X 609649 609861 31 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_RTE-X 227393 227554 46 - . . . . . -1 -1 -1 . . . scaffold912 WUBlastX LINE_RTE-X 54163 54282 29 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Sola 253632 253949 44 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX DNA_Sola 885172 885354 48 + . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_TcMar-Marin 704231 704314 27 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 32093 32179 22 - . . . . . -1 -1 -1 . . . scaffold39536 WUBlastX LINE_L1-Tx1 5883 6203 46 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_hAT-Tip100 80042 80362 29 + . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX DNA_hAT-Tip100 87185 87454 88 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 197670 197870 63 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_ERVL 332332 332523 30 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy-Troyk 270703 270810 30 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1-Tx1 423805 423987 27 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold583 WUBlastX LTR_Gypsy 278904 279542 25 + . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX DNA_hAT-Tip100 781 1173 51 + . . . . . -1 -1 -1 . . . scaffold43692 WUBlastX LINE_CR1 134315 134398 23 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_CR1 577119 577409 67 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LINE_CR1 205233 205313 46 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold1728 WUBlastX LINE_CR1-L2 28561 28884 37 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LINE_CR1-L2 284061 284396 67 - . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LINE_CR1-L2 398416 398532 41 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L2 116858 117262 37 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 613424 613582 44 - . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_CR1 29693 29791 36 + . . scaffold37472 GLEAN mRNA 1629 29724 0.999786 + . ID=CGI_10002390; scaffold644 WUBlastX LINE_L1 84904 85038 73 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_CR1 365892 366533 53 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold160 WUBlastX LTR_Pao 319662 319751 20 - . . scaffold160 GLEAN mRNA 319475 320748 0.628364 - . ID=CGI_10020588; scaffold36390 WUBlastX LTR_Gypsy 5323 5811 78 + . . scaffold36390 GLEAN mRNA 5206 5853 0.999984 + . ID=CGI_10001879; scaffold301 WUBlastX LTR_Gypsy 1141771 1142112 47 - . . scaffold301 GLEAN mRNA 1141876 1142190 0.998748 - . ID=CGI_10026747; scaffold459 WUBlastX LTR_Gypsy 364617 364922 52 - . . scaffold459 GLEAN mRNA 364047 364622 0.990874 - . ID=CGI_10018183; scaffold459 WUBlastX LTR_Gypsy 364942 365037 47 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 26046 26207 56 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 26204 26443 41 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy-Cigr 457409 457942 24 - . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LTR_Gypsy 321605 322156 52 + . . scaffold43818 GLEAN mRNA 318880 322672 0.37766 + . ID=CGI_10012777; scaffold907 WUBlastX LINE_CR1 5414 5518 42 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 745872 746009 27 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LTR_Ngaro 430314 430430 36 + . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold1423 WUBlastX LINE_Jockey 713796 714317 64 + . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold831 WUBlastX LINE_L1-Tx1 243081 243593 37 + . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_Harbinger 16467 16763 66 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_Harbinger 454714 454938 40 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_Harbinger 455748 455909 45 - . . . . . -1 -1 -1 . . . scaffold450 WUBlastX LTR_Gypsy 79714 79764 21 - . . scaffold450 GLEAN mRNA 66067 80656 0.505252 - . ID=CGI_10010319; scaffold1077 WUBlastX DNA_Harbinger 507971 508162 23 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Harbinger 508322 508402 43 - . . . . . -1 -1 -1 . . . scaffold1116 WUBlastX RC_Helitron 28311 28430 33 - . . . . . -1 -1 -1 . . . scaffold1116 WUBlastX RC_Helitron 28478 28594 23 - . . . . . -1 -1 -1 . . . scaffold1680 WUBlastX LTR_Gypsy 69575 70492 62 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold562 WUBlastX DNA_IS4EU 448650 448901 55 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX DNA_IS4EU 90147 90341 40 - . . scaffold67 GLEAN mRNA 72770 90591 0.702383 - . ID=CGI_10018264; scaffold1687 WUBlastX DNA_IS4EU 175921 176232 33 + . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold599 WUBlastX DNA_IS4EU 464556 464714 31 + . . scaffold599 GLEAN mRNA 453980 472237 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 464556 464714 31 + . . scaffold599 GLEAN mRNA 456252 477114 0.953927 + . ID=CGI_10021726; scaffold977 WUBlastX DNA_TcMar-Fot1 302757 303137 96 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX DNA_TcMar-Marin 281061 281174 26 - . . . . . -1 -1 -1 . . . C28626 WUBlastX LINE_L1 435 503 22 + . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX LINE_L1 276003 276185 43 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 1323737 1324099 69 + . . . . . -1 -1 -1 . . . C24582 WUBlastX LINE_L1 1295 1606 82 + . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LINE_L1 104903 104995 37 + . . . . . -1 -1 -1 . . . scaffold37992 WUBlastX LINE_RTE-X 20434 20625 63 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_RTE-X 70543 70782 86 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_RTE-X 240924 241115 63 + . . . . . -1 -1 -1 . . . scaffold76 WUBlastX LINE_RTE-X 227718 227921 52 + . . scaffold76 GLEAN mRNA 221391 229684 0.999675 - . ID=CGI_10009406; scaffold964 WUBlastX LINE_RTE-X 169416 169493 35 + . . . . . -1 -1 -1 . . . scaffold42892 WUBlastX LINE_RTE-X 2364 2621 58 - . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX DNA_Sola 54960 55484 51 - . . . . . -1 -1 -1 . . . scaffold1230 WUBlastX LINE_RTE-X 2765 3013 46 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_RTE-X 570123 570263 75 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 475821 476081 59 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LTR_Foamy 214779 214838 28 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_TcMar-Tc1 116665 116853 42 + . . scaffold535 GLEAN mRNA 111373 154699 0.592399 + . ID=CGI_10020283; scaffold1462 WUBlastX LTR_DIRS 391137 391238 27 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_CR1 76758 76898 28 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LINE_L2 44247 44327 38 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_L2 411538 411768 54 + . . scaffold751 GLEAN mRNA 408046 415763 1 - . ID=CGI_10017403; scaffold43064 WUBlastX LINE_CR1 161600 161698 24 - . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LTR_DIRS 50679 51320 27 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2 25130 25168 23 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 553911 554258 94 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy-Gmr1 311304 311597 94 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Gypsy 393872 394105 33 + . . scaffold678 GLEAN mRNA 394092 404361 1 + . ID=CGI_10026356; scaffold602 WUBlastX LTR_Gypsy 793975 794142 59 + . . scaffold602 GLEAN mRNA 781902 798568 0.814164 + . ID=CGI_10023204; scaffold37252 WUBlastX DNA_IS4EU 9669 9755 39 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_IS4EU 157047 157331 20 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Gypsy 446284 446631 21 - . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LTR_Gypsy 72206 72976 29 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX RC_Helitron 183116 183346 116 - . . . . . -1 -1 -1 . . . scaffold445 WUBlastX DNA_hAT-Tip100 470484 470912 70 - . . . . . -1 -1 -1 . . . scaffold930 WUBlastX DNA_hAT-hATw 202521 202706 39 + . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LTR_Gypsy 317920 318447 86 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1-Tx1 38708 38779 20 + . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LINE_L1 1316 1714 26 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_R2 52187 52390 22 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LINE_Penelope 293352 293828 34 + . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX DNA_TcMar-Tc1 141359 141532 35 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Tc2 154137 154523 49 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_TcMar-Tc1 616199 616342 63 + . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LINE_RTE-BovB 259864 260118 79 + . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX LINE_RTE-X 63113 63328 46 - . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX LINE_RTE-X 63792 63887 38 - . . . . . -1 -1 -1 . . . scaffold43210 WUBlastX LINE_RTE-BovB 183870 184007 70 - . . scaffold43210 GLEAN mRNA 171001 198787 0.693179 - . ID=CGI_10009448; scaffold1203 WUBlastX LINE_RTE-X 147534 147869 49 - . . . . . -1 -1 -1 . . . scaffold41806 WUBlastX LINE_RTE-X 64976 65119 21 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LINE_RTE-X 50362 50481 22 + . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_RTE-X 164102 164338 38 - . . . . . -1 -1 -1 . . . scaffold33638 WUBlastX LINE_RTE-X 8404 8769 64 + . . . . . -1 -1 -1 . . . C31304 WUBlastX LINE_RTE-BovB 223 318 45 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_RTE-BovB 499737 499943 76 + . . scaffold1512 GLEAN mRNA 495502 499794 0.641037 - . ID=CGI_10019873; C27106 WUBlastX LINE_RTE-X 737 1066 44 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 66159 66413 104 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold591 WUBlastX DNA_PiggyBac 725353 725418 27 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold527 WUBlastX DNA_Maverick 267383 267667 73 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 477640 477825 64 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold57 WUBlastX DNA_En-Spm 3801 4085 20 + . . scaffold57 GLEAN mRNA 3208 18413 0.810616 + . ID=CGI_10020530; scaffold443 WUBlastX DNA_Sola 445097 445588 84 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_DIRS 386688 386945 31 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 337737 337955 21 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L1-Tx1 255474 255662 83 - . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LINE_L1-Tx1 114894 115082 81 + . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_CR1 100564 100701 93 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold784 WUBlastX LINE_L2 434835 434978 23 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_CR1 185523 185879 70 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1524 WUBlastX LINE_L2 174840 175199 86 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_hAT 232757 232900 26 + . . scaffold1750 GLEAN mRNA 229777 232957 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 232757 232900 26 + . . scaffold1750 GLEAN mRNA 227209 235623 0.823116 - . ID=CGI_10021475; scaffold321 WUBlastX LTR_Copia 45914 46048 30 + . . . . . -1 -1 -1 . . . scaffold35358 WUBlastX LTR_Pao 3159 3461 113 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 169024 169806 70 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold448 WUBlastX LTR_Gypsy 996361 996459 20 - . . . . . -1 -1 -1 . . . scaffold1274 WUBlastX LTR_Gypsy-Cigr 2293 2619 111 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_L2 434000 434230 43 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LTR_Ngaro 285454 285987 60 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold664 WUBlastX LTR_Ngaro 498340 498654 46 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_DIRS 14161 14424 57 + . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 66799 67608 93 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX DNA_Harbinger 181342 181755 49 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX LINE_L1 132133 132936 43 + . . scaffold43150 GLEAN mRNA 121679 138901 1 + . ID=CGI_10009035; scaffold42994 WUBlastX LTR_Gypsy 185990 186667 79 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_Kolobok-IS4 56023 56187 77 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_TcMar-Tc1 229488 229742 49 - . . scaffold816 GLEAN mRNA 223398 238743 0.358147 + . ID=CGI_10015655; scaffold658 WUBlastX DNA_MuDR 428538 428876 49 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_Penelope 185880 186341 45 + . . . . . -1 -1 -1 . . . scaffold39220 WUBlastX DNA_Maverick 63486 63821 85 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_RTE-BovB 631831 632199 73 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_RTE-BovB 42569 43318 48 - . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 368259 368369 37 - . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 368520 368624 29 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 152563 152682 30 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_RTE-X 328801 329049 73 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-X 486753 487223 49 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 180140 180430 61 + . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LINE_RTE-X 140236 140496 70 - . . . . . -1 -1 -1 . . . C33510 WUBlastX LINE_RTE-X 4804 5121 40 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_RTE-X 166956 167273 40 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_RTE-X 339849 340061 98 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_RTE-X 341407 341703 58 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 394912 395367 45 + . . scaffold290 GLEAN mRNA 393390 421679 0.99629 + . ID=CGI_10018549; scaffold535 WUBlastX LINE_RTE-X 220607 221008 55 + . . . . . -1 -1 -1 . . . scaffold387 WUBlastX DNA_Sola 53633 53959 95 + . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LINE_L1-Tx1 111540 112058 57 - . . . . . -1 -1 -1 . . . scaffold40164 WUBlastX LINE_L1-Tx1 8255 8404 37 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold67 WUBlastX DNA_hAT-Tip100 28493 28807 58 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold42570 WUBlastX LINE_CR1 16343 16501 99 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold94 WUBlastX LTR_Copia 105325 105576 33 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LTR_Gypsy-Cigr 65200 65505 86 + . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LTR_Gypsy-Cigr 65468 65596 24 + . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Merlin 50185 50262 40 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 50185 50262 40 + . . scaffold39196 GLEAN mRNA 39677 52332 0.583111 + . ID=CGI_10003218; scaffold43894 WUBlastX LTR_Pao 257668 257901 20 + . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX LINE_CR1 109743 109859 35 + . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold77 WUBlastX LTR_Ngaro 858652 859254 78 - . . . . . -1 -1 -1 . . . scaffold230 WUBlastX DNA_Crypton 65383 65865 35 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1366984 1367058 26 - . . . . . -1 -1 -1 . . . scaffold770 WUBlastX DNA_Kolobok 64964 65104 33 + . . scaffold770 GLEAN mRNA 56737 75604 0.520804 - . ID=CGI_10006265; scaffold770 WUBlastX DNA_Kolobok 65292 65447 44 + . . scaffold770 GLEAN mRNA 56737 75604 0.520804 - . ID=CGI_10006265; scaffold770 WUBlastX DNA_Kolobok 65570 65725 38 + . . scaffold770 GLEAN mRNA 56737 75604 0.520804 - . ID=CGI_10006265; scaffold43442 WUBlastX DNA_hAT-Tip100 2748 2837 21 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Harbinger 259236 259370 96 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX RC_Helitron 113110 113301 24 + . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LTR_Gypsy 277922 278332 103 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 747960 748004 42 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_Harbinger 10074 10271 65 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LINE_L1-Tx1 1889 2182 75 - . . . . . -1 -1 -1 . . . scaffold397 WUBlastX LINE_L1-Tx1 46042 46377 41 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_L1-Tx1 31534 31701 62 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_L1-Tx1 89700 90101 32 + . . scaffold54 GLEAN mRNA 86464 97737 1 + . ID=CGI_10023655; scaffold358 WUBlastX LINE_RTE-X 136562 136663 24 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold37 WUBlastX DNA_Maverick 158000 158380 42 - . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-X 242135 242323 29 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_ERVK 905716 905880 51 + . . scaffold867 GLEAN mRNA 886050 906355 0.494912 - . ID=CGI_10026243; scaffold867 WUBlastX LTR_ERVK 905716 905880 51 + . . scaffold867 GLEAN mRNA 898407 906644 0.734077 + . ID=CGI_10026244; scaffold867 WUBlastX LTR_ERVK 906177 906260 31 + . . scaffold867 GLEAN mRNA 886050 906355 0.494912 - . ID=CGI_10026243; scaffold867 WUBlastX LTR_ERVK 906177 906260 31 + . . scaffold867 GLEAN mRNA 898407 906644 0.734077 + . ID=CGI_10026244; scaffold1729 WUBlastX LINE_L1-Tx1 193702 193866 39 - . . . . . -1 -1 -1 . . . C30608 WUBlastX LINE_L1-Tx1 5718 5981 99 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 1008733 1008987 74 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 161993 162067 34 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 303559 304038 40 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_CR1 588779 588994 20 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold1682 WUBlastX LINE_L2 62312 62362 28 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_CR1-L2 485235 485381 80 + . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX LINE_CR1-L2 22218 22670 58 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_CR1 128558 128746 56 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_CR1 394499 394681 70 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 161829 162632 78 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 311235 311597 90 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 133311 133379 24 - . . . . . -1 -1 -1 . . . scaffold37816 WUBlastX LTR_Ngaro 32371 33006 48 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 664238 664354 31 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold39966 WUBlastX RC_Helitron 3214 3900 121 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_R2-Hero 887008 887088 25 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_R2-Hero 887105 887344 39 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX DNA_hAT-Ac 887346 887729 83 + . . . . . -1 -1 -1 . . . scaffold1080 WUBlastX DNA_IS4EU 219642 219764 68 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_IS4EU 247904 248512 63 + . . . . . -1 -1 -1 . . . scaffold38974 WUBlastX DNA_Kolobok 18620 18769 52 + . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold38210 WUBlastX LINE_Jockey 24452 24586 32 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold43122 WUBlastX LINE_L1 77989 78054 25 + . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX LINE_L1 35404 36003 51 - . . scaffold42946 GLEAN mRNA 33025 55751 0.459933 + . ID=CGI_10008170; scaffold1527 WUBlastX LINE_Penelope 190816 191091 59 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX DNA_MuDR 508170 508313 58 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 116537 116644 24 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX DNA_TcMar-Marin 180823 181344 70 - . . scaffold172 GLEAN mRNA 172027 190586 0.544386 + . ID=CGI_10013522; scaffold425 WUBlastX DNA_TcMar-Pogo 70228 70404 76 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_TcMar-Pogo 70419 70601 36 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX DNA_TcMar-Marin 54171 54464 106 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Maverick 244525 244671 115 - . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX DNA_PiggyBac 48692 48937 37 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_PiggyBac 631804 631902 35 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-BovB 452644 452904 83 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_RTE-X 297233 297535 73 - . . . . . -1 -1 -1 . . . scaffold770 WUBlastX LINE_RTE-X 89942 90259 75 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 525900 526013 31 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 526010 526162 32 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LINE_RTE-X 293479 293736 21 - . . . . . -1 -1 -1 . . . C15904 WUBlastX LINE_RTE-X 1 336 109 + . . . . . -1 -1 -1 . . . scaffold43692 WUBlastX DNA_TcMar-Marin 150051 150389 130 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Sola 143756 143983 121 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold675 WUBlastX LINE_L1-Tx1 10607 11239 79 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_TcMar-Tc1 359511 359699 41 + . . . . . -1 -1 -1 . . . scaffold38058 WUBlastX LTR_Gypsy 4573 4995 61 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold728 WUBlastX LINE_L2 268532 269161 124 + . . . . . -1 -1 -1 . . . scaffold41082 WUBlastX LINE_CR1 55893 56354 98 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_CR1 147760 148230 41 - . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX LINE_CR1-L2 198963 199310 117 - . . . . . -1 -1 -1 . . . scaffold38934 WUBlastX LTR_Ngaro 20849 21286 108 - . . scaffold38934 GLEAN mRNA 14643 26625 0.999796 + . ID=CGI_10003096; scaffold226 WUBlastX LTR_DIRS 464352 464684 30 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold1448 WUBlastX LINE_RTE 107948 108244 128 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 42793 43140 94 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 264544 264648 41 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 24454 25041 119 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LINE_Jockey 31886 31933 30 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_Kolobok-IS4 152779 153183 56 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_IS4EU 476813 477712 104 - . . scaffold175 GLEAN mRNA 471780 490454 0.998407 - . ID=CGI_10021334; scaffold237 WUBlastX DNA_IS4EU 68908 69807 104 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX DNA_hAT-Tip100 1259602 1259832 128 + . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LTR_Gypsy 21890 22498 85 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Harbinger 227468 227620 68 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1 414700 415176 92 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold169 WUBlastX LINE_L1 773097 773315 28 - . . . . . -1 -1 -1 . . . C31460 WUBlastX DNA_Kolobok 3436 3651 103 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX DNA_IS4EU 23668 24252 65 + . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_L1 87137 87454 21 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_RTE-X 167320 167388 49 + . . . . . -1 -1 -1 . . . scaffold251 WUBlastX LINE_RTE-X 15275 15598 98 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 476473 476799 46 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 295654 295734 21 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 297037 297375 24 + . . . . . -1 -1 -1 . . . C29914 WUBlastX LINE_RTE-BovB 1678 1770 54 + . . . . . -1 -1 -1 . . . C29914 WUBlastX LINE_RTE-BovB 1772 1993 61 + . . . . . -1 -1 -1 . . . scaffold32618 WUBlastX LINE_RTE-X 1388 1441 26 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_R2 130651 131295 88 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold363 WUBlastX LTR_Gypsy 205526 205600 20 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_Gypsy 15822 15950 69 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold695 WUBlastX LINE_L1-Tx1 97923 98375 120 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; C27526 WUBlastX LINE_L1-Tx1 3314 3763 41 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_R1 1623639 1623800 20 - . . . . . -1 -1 -1 . . . scaffold1690 WUBlastX LINE_L1-Tx1 47775 48080 49 + . . scaffold1690 GLEAN mRNA 9012 64265 0.995929 - . ID=CGI_10003316; scaffold354 WUBlastX LINE_L2 489388 490545 38 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold1016 WUBlastX LINE_CR1 150166 150477 86 - . . . . . -1 -1 -1 . . . C12888 WUBlastX LTR_Gypsy 5 142 101 - . . . . . -1 -1 -1 . . . C12888 WUBlastX LTR_Gypsy 133 204 57 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy 113765 114235 110 - . . . . . -1 -1 -1 . . . scaffold828 WUBlastX DNA_Harbinger 134096 134869 105 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 395378 395746 159 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LTR_Gypsy 31550 31927 132 + . . scaffold38854 GLEAN mRNA 27679 32695 0.651134 - . ID=CGI_10003012; scaffold343 WUBlastX RC_Helitron 612639 613220 115 - . . scaffold343 GLEAN mRNA 606783 616118 0.949663 + . ID=CGI_10021767; scaffold43 WUBlastX DNA_IS4EU 4098 4262 35 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_I 945991 946215 24 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_Kolobok-IS4 119116 119346 71 - . . . . . -1 -1 -1 . . . scaffold578 WUBlastX DNA_Kolobok 21942 22109 42 + . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold42946 WUBlastX LINE_L1 35515 35988 98 - . . scaffold42946 GLEAN mRNA 33025 55751 0.459933 + . ID=CGI_10008170; scaffold1857 WUBlastX LINE_L1 455647 456276 62 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L1 5103 5180 42 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 93396 93689 36 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 93658 93870 56 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold335 WUBlastX LINE_L1 467337 467624 113 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX DNA_TcMar-Marin 550998 551336 129 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_PiggyBac 155042 155290 122 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 761646 761729 42 + . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_RTE-X 81618 81956 76 - . . scaffold834 GLEAN mRNA 70472 85857 0.493914 + . ID=CGI_10004322; scaffold496 WUBlastX LINE_RTE-X 657739 657834 25 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_RTE-X 425489 425656 72 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LINE_RTE-X 135498 135632 85 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_RTE-BovB 710590 710802 117 - . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_RTE-X 32497 32706 108 + . . scaffold992 GLEAN mRNA 31527 46122 0.937041 - . ID=CGI_10007504; scaffold392 WUBlastX LTR_Ngaro 211304 211588 117 - . . . . . -1 -1 -1 . . . scaffold1039 WUBlastX LINE_L1-Tx1 3 413 88 + . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_L2 158884 159090 41 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX DNA_hAT-Tip100 641380 641535 45 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Ngaro 357086 357928 75 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold413 WUBlastX LTR_Ngaro 143638 144108 128 - . . scaffold413 GLEAN mRNA 138311 158515 0.482983 + . ID=CGI_10022796; scaffold42596 WUBlastX LINE_L2 97560 97661 31 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_ERV1 301425 301580 49 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_NOF? 1403281 1404030 30 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_Penelope 183039 183446 70 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_Penelope 167044 167688 86 - . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LINE_L1 100477 100746 69 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold337 WUBlastX LINE_RTE-BovB 570716 571057 64 + . . scaffold337 GLEAN mRNA 562237 577539 1 - . ID=CGI_10028070; scaffold102 WUBlastX LINE_RTE-X 970888 971283 74 - . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold1032 WUBlastX LINE_RTE-X 450368 450784 123 - . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX LINE_RTE-X 2844 3095 137 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LINE_RTE-X 107781 107930 51 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-BovB 306305 306391 53 + . . scaffold1462 GLEAN mRNA 305995 331618 0.999054 - . ID=CGI_10014383; scaffold38756 WUBlastX DNA_Sola 3583 3954 74 - . . . . . -1 -1 -1 . . . scaffold33840 WUBlastX LINE_L1-Tx1 7262 7741 149 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_L1-Tx1 94283 95068 126 - . . . . . -1 -1 -1 . . . C26402 WUBlastX LINE_L1-Tx1 3313 3729 126 + . . . . . -1 -1 -1 . . . scaffold36802 WUBlastX DNA_Academ 3272 3511 86 + . . scaffold36802 GLEAN mRNA 2993 3328 0.649473 + . ID=CGI_10002073; scaffold1860 WUBlastX LINE_L1 97420 97527 57 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1583 WUBlastX LTR_Pao 897139 897372 163 - . . . . . -1 -1 -1 . . . scaffold907 WUBlastX LTR_Pao 11841 12215 65 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 20485 20670 64 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_L2 47227 47556 93 + . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX DNA_Crypton 74025 74471 110 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LTR_Ngaro 966972 967148 47 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold142 WUBlastX LTR_Gypsy-Cigr 321218 321727 152 + . . . . . -1 -1 -1 . . . scaffold817 WUBlastX DNA_Kolobok 67852 68100 113 - . . scaffold817 GLEAN mRNA 54160 69177 0.983542 - . ID=CGI_10008657; scaffold38974 WUBlastX DNA_Kolobok 18394 18450 43 + . . . . . -1 -1 -1 . . . scaffold38974 WUBlastX DNA_Kolobok 18765 18863 58 + . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold370 WUBlastX LTR_Gypsy 394874 394930 21 - . . . . . -1 -1 -1 . . . scaffold647 WUBlastX DNA_Harbinger 153015 153335 141 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 493214 493336 74 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 106658 107440 135 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 335052 335504 32 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Kolobok 2926 3075 71 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LINE_Penelope 85526 85774 153 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Fot1 71166 71252 42 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 446566 447069 121 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_RTE-X 215706 216116 109 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_TcMar-Tigge 204597 205661 137 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 255211 255480 36 - . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX LTR_Pao 69022 70002 990 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Ngaro 506155 506613 347 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy-Cigr 89699 89914 83 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy-Cigr 90858 91028 175 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy 277342 277998 381 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 1054108 1056180 744 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1 342104 342475 245 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold43116 WUBlastX LTR_Pao 39238 39756 310 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 40141 40227 61 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 40501 40800 44 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 40943 41254 81 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 42148 42462 41 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 42595 43110 63 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Sola 376341 377096 315 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Sola 377395 378450 675 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Pao 193926 194099 23 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold156 WUBlastX LTR_Gypsy 108344 109162 85 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_hAT 1356688 1356981 39 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LINE_L2 63160 63534 29 + . . . . . -1 -1 -1 . . . scaffold39352 WUBlastX LINE_L2 31644 32117 136 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LTR_Gypsy 112798 113088 25 + . . scaffold149 GLEAN mRNA 107962 121917 0.899792 + . ID=CGI_10025290; scaffold258 WUBlastX LTR_Gypsy 147702 148169 20 - . . scaffold258 GLEAN mRNA 144330 148695 0.999999 - . ID=CGI_10020044; C29010 WUBlastX LTR_DIRS 4873 5196 53 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 112921 113298 21 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Ngaro 420512 420814 100 + . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_Jockey 157392 157541 25 + . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_TcMar-Tc1 95340 95642 91 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LINE_Penelope 188323 188934 94 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_Penelope 117082 117549 118 - . . scaffold163 GLEAN mRNA 112985 132830 0.606466 + . ID=CGI_10018612; scaffold1024 WUBlastX DNA_Kolobok 295182 295469 71 - . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold86 WUBlastX LINE_L1 217092 217565 24 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold626 WUBlastX DNA_Maverick 382031 382459 102 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 57219 57566 97 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_RTE-X 148102 148488 110 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 116932 117657 64 + . . scaffold3 GLEAN mRNA 115118 120562 0.999993 + . ID=CGI_10027276; C28876 WUBlastX LTR_Gypsy-Cigr 4574 5197 119 + . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LTR_Gypsy 28459 28722 50 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 226553 226657 20 - . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 16901 17203 39 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 17274 17456 51 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Gypsy 417664 418236 337 + . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_RTE-X 18471 19823 203 - . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold1773 WUBlastX LTR_Pao 248944 249933 1112 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_Sola 234925 235767 335 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_Sola 236973 237176 124 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_Sola 237943 238449 243 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 485564 487165 427 - . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_R2-Hero 125606 125827 75 + . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LTR_Gypsy-Cigr 70865 71461 165 + . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_CR1 94764 94988 21 + . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_L2 414423 414566 56 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_L2 292980 293318 119 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold1866 WUBlastX LINE_L2 204724 204993 52 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold1362 WUBlastX LINE_CR1-L2 403170 403583 110 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 350362 350619 28 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold1258 WUBlastX DNA_En-Spm 309346 309822 160 + . . . . . -1 -1 -1 . . . C34010 WUBlastX LTR_Ngaro 10257 10547 72 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Ngaro 114733 115050 26 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_Ngaro 187096 187242 108 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_IS4EU 277098 277199 43 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 277098 277199 43 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 277567 277716 31 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 277567 277716 31 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 278481 278702 61 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 278481 278702 61 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold248 WUBlastX LINE_Penelope 140598 140786 43 - . . . . . -1 -1 -1 . . . C35502 WUBlastX LINE_Penelope 43 738 116 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_TcMar-Tc1 722344 723096 116 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-BovB 283778 283885 82 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 971289 971501 50 - . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold801 WUBlastX DNA_Sola 451157 451261 44 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 223192 223977 374 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 224276 224977 494 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 224986 225132 94 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Pao 1229309 1229866 360 - . . . . . -1 -1 -1 . . . scaffold36398 WUBlastX LTR_Gypsy 28200 28649 56 - . . . . . -1 -1 -1 . . . scaffold43072 WUBlastX LINE_L2 124 1881 1103 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 677254 677457 168 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 678732 679148 186 - . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX LTR_Gypsy 167586 168119 287 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 168359 168928 257 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 168939 169742 564 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 170155 170280 57 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold99 WUBlastX LTR_Pao 166729 167940 896 - . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Pao 48094 48516 98 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L2 216880 217092 33 + . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LINE_L2 89601 90206 49 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 179711 180091 51 - . . . . . -1 -1 -1 . . . C15972 WUBlastX LTR_Gypsy 11 337 206 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 625332 626216 114 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Marin 245810 246187 42 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Marin 246216 246536 81 + . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX LINE_L1-Tx1 38440 38724 176 + . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX LINE_L1-Tx1 456971 457513 90 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1 736711 737793 26 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX LINE_Penelope 39667 40224 145 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold419 WUBlastX LINE_RTE-X 808307 808429 36 + . . scaffold419 GLEAN mRNA 806382 811629 0.999675 - . ID=CGI_10028368; scaffold1024 WUBlastX LINE_RTE-X 1216613 1217302 66 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 148780 149115 85 + . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-X 10944 11279 82 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Maverick 376036 376227 80 + . . . . . -1 -1 -1 . . . scaffold935 WUBlastX DNA_Sola 52356 53351 67 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_TcMar-Tc2 4037 4186 87 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_Zator 604053 604364 113 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_Zator 604805 605035 82 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy-Cigr 1226812 1227462 230 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX DNA_Sola 23340 24386 348 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 24537 24746 73 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 24964 25251 197 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 25403 26527 486 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold42754 WUBlastX LTR_DIRS 109982 112033 918 - . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LTR_DIRS 111987 112613 108 - . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX RC_Helitron 82031 83125 401 + . . . . . -1 -1 -1 . . . C34256 WUBlastX LTR_Gypsy 1 1671 1263 + . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_hAT-Tip100 174229 174372 47 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy-Cigr 635280 635756 197 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold241 WUBlastX LTR_Gypsy 1009344 1009784 205 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_En-Spm 614834 614965 91 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold1532 WUBlastX LTR_Gypsy 645702 646244 183 - . . . . . -1 -1 -1 . . . scaffold40224 WUBlastX LTR_Gypsy 84525 85067 156 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 244795 245085 107 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 552319 552690 127 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold43878 WUBlastX DNA_Kolobok 63192 63506 111 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63994 64176 60 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold121 WUBlastX LINE_RTE-BovB 261980 262285 172 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1-Tx1 1046142 1046270 41 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold1377 WUBlastX DNA_IS4EU 186566 186871 96 + . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; C32918 WUBlastX DNA_TcMar-Fot1 8722 9246 100 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LTR_Ngaro 271081 271491 195 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold448 WUBlastX LINE_Penelope 189916 190542 67 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-X 39509 39823 92 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 492146 492217 48 - . . . . . -1 -1 -1 . . . C30816 WUBlastX LINE_RTE-X 7645 7971 35 + . . . . . -1 -1 -1 . . . scaffold36926 WUBlastX LINE_RTE-X 22205 22597 176 - . . . . . -1 -1 -1 . . . scaffold666 WUBlastX LTR_Ngaro 9595 9822 32 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 67948 68238 81 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Pao 445316 445813 331 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_Helitron 41296 41904 39 - . . . . . -1 -1 -1 . . . scaffold1549 WUBlastX LINE_L2 47789 48073 160 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_CR1-L2 159785 159835 36 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold1081 WUBlastX LTR_Gypsy 53664 53804 41 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LTR_DIRS 359551 359613 24 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Ngaro 140831 141037 100 + . . scaffold354 GLEAN mRNA 139508 142225 0.54483 - . ID=CGI_10025700; scaffold354 WUBlastX LTR_Ngaro 140831 141037 100 + . . scaffold354 GLEAN mRNA 139640 141904 0.996603 + . ID=CGI_10025701; scaffold36410 WUBlastX DNA_Harbinger 5596 5775 55 + . . scaffold36410 GLEAN mRNA 4689 21980 0.354487 - . ID=CGI_10001887; scaffold79 WUBlastX DNA_Harbinger 257005 257139 21 + . . . . . -1 -1 -1 . . . scaffold41772 WUBlastX LTR_Gypsy 100004 100387 99 + . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LTR_Ngaro 85425 85793 122 + . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LTR_Ngaro 85795 85968 42 + . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LTR_Ngaro 86143 86301 44 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 208658 209161 95 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-BovB 46643 46945 52 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_RTE-X 4011 4136 36 + . . . . . -1 -1 -1 . . . C31300 WUBlastX LTR_ERV1 5625 6128 137 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LINE_L2 2746 4443 1234 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L1-Tx1 205044 207104 1297 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-BovB 364564 366027 1405 + . . . . . -1 -1 -1 . . . C29620 WUBlastX LINE_L2 1957 2454 247 + . . . . . -1 -1 -1 . . . C29620 WUBlastX LINE_L2 2486 3094 113 + . . . . . -1 -1 -1 . . . C29620 WUBlastX LINE_L2 3108 3779 408 + . . . . . -1 -1 -1 . . . C29620 WUBlastX LINE_L2 3767 4261 305 + . . . . . -1 -1 -1 . . . C29620 WUBlastX LINE_L2 4279 4710 251 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L1-Tx1 358725 359366 320 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L1-Tx1 359290 360102 257 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L1-Tx1 360080 360901 662 + . . . . . -1 -1 -1 . . . scaffold1194 WUBlastX LINE_L1-Tx1 1 3012 1148 - . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX DNA_Academ 43493 43762 58 - . . scaffold1757 GLEAN mRNA 43472 43939 0.579796 - . ID=CGI_10005113; scaffold1154 WUBlastX LTR_Gypsy 393603 393941 96 + . . . . . -1 -1 -1 . . . scaffold608 WUBlastX LINE_L1 54814 55422 151 - . . . . . -1 -1 -1 . . . scaffold1855 WUBlastX LINE_L1 74020 74781 160 + . . . . . -1 -1 -1 . . . scaffold749 WUBlastX LINE_RTE-X 53718 54248 110 - . . scaffold749 GLEAN mRNA 51985 56678 1 - . ID=CGI_10002827; scaffold41834 WUBlastX DNA_Maverick 42044 42166 45 - . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX LINE_RTE-X 186582 187181 102 - . . scaffold43574 GLEAN mRNA 179931 197375 0.814122 + . ID=CGI_10010880; scaffold1877 WUBlastX LINE_RTE-X 291603 292487 137 - . . . . . -1 -1 -1 . . . scaffold40856 WUBlastX LINE_RTE-X 84720 84977 91 + . . . . . -1 -1 -1 . . . scaffold33594 WUBlastX LTR_Ngaro 13627 14055 196 + . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LTR_Ngaro 97278 97706 196 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; C23316 WUBlastX LTR_Ngaro 953 1489 157 - . . C23316 GLEAN mRNA 644 1111 0.999999 - . ID=CGI_10000116; scaffold42674 WUBlastX LINE_L1-Tx1 93267 93716 193 + . . . . . -1 -1 -1 . . . C26054 WUBlastX DNA_PiggyBac 1015 1425 212 - . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LINE_L1-Tx1 73082 73216 20 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_L1-Tx1 102274 102354 37 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold33056 WUBlastX LINE_L1-Tx1 1756 2547 107 - . . . . . -1 -1 -1 . . . scaffold33056 WUBlastX LINE_L1-Tx1 2556 4784 988 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_L2 217291 219564 1239 - . . . . . -1 -1 -1 . . . scaffold900 WUBlastX LINE_RTE-BovB 3 305 351 - . . . . . -1 -1 -1 . . . scaffold900 WUBlastX LINE_RTE-BovB 868 1827 1140 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-BovB 213261 214724 1074 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-BovB 214712 215557 346 - . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_Maverick 170041 170355 133 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 170357 170542 158 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 170565 170981 326 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 170998 171831 614 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 172213 172881 91 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold833 WUBlastX LTR_Gypsy 64509 66632 1214 - . . . . . -1 -1 -1 . . . scaffold36398 WUBlastX LTR_Gypsy 27646 28143 76 - . . . . . -1 -1 -1 . . . scaffold36390 WUBlastX LTR_Pao 30236 30973 635 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Academ 53042 53467 181 - . . scaffold524 GLEAN mRNA 52982 53245 0.999451 - . ID=CGI_10016597; scaffold867 WUBlastX LTR_Pao 603221 603703 56 + . . . . . -1 -1 -1 . . . scaffold35358 WUBlastX LTR_Pao 3264 3506 248 + . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_CR1 160146 160472 76 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_DIRS 76353 76979 185 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_DIRS 50434 50574 25 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_DIRS 50567 50752 73 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX DNA_hAT-Tip100 470442 470810 196 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1 43515 43697 37 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_L1 115085 115240 73 + . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LINE_RTE-X 227190 227972 127 + . . . . . -1 -1 -1 . . . scaffold38274 WUBlastX LINE_RTE-X 6801 7145 198 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 209968 210066 66 - . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 72045 72608 230 + . . . . . -1 -1 -1 . . . scaffold39482 WUBlastX DNA_Zator 3975 6071 1258 + . . scaffold39482 GLEAN mRNA 342 10800 0.374169 - . ID=CGI_10003389; scaffold39482 WUBlastX DNA_Zator 6965 7123 93 + . . scaffold39482 GLEAN mRNA 342 10800 0.374169 - . ID=CGI_10003389; scaffold39482 WUBlastX DNA_Zator 7224 7721 139 + . . scaffold39482 GLEAN mRNA 342 10800 0.374169 - . ID=CGI_10003389; scaffold471 WUBlastX LTR_Copia 513731 515128 780 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX RC_Helitron 140358 140630 121 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX RC_Helitron 144415 144771 158 - . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_Pao 23723 23887 65 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX LINE_CR1 50693 51196 164 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LINE_L2 111958 112803 110 - . . scaffold43182 GLEAN mRNA 103221 129206 0.72893 - . ID=CGI_10009201; scaffold236 WUBlastX LINE_CR1 409788 409958 39 - . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 71658 71822 66 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_En-Spm 438102 438710 133 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 544420 544629 123 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX DNA_hAT-Ac 220928 221209 125 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_IS4EU 171020 171343 127 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_L1-Tx1 90031 90834 98 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 622657 623472 54 + . . scaffold149 GLEAN mRNA 618631 623519 0.999675 - . ID=CGI_10025312; scaffold44 WUBlastX LTR_Ngaro 224606 225079 188 + . . . . . -1 -1 -1 . . . C32838 WUBlastX DNA_TcMar-Fot1 9302 9628 215 + . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LINE_Penelope 55579 56412 83 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_RTE-X 173910 174092 81 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold1221 WUBlastX LINE_L1-Tx1 525935 526402 60 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold1221 WUBlastX LINE_L1-Tx1 526417 526815 22 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold43782 WUBlastX LINE_L1-Tx1 170546 171250 169 + . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX DNA_TcMar-Tc1 45005 45208 62 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_TcMar-Tc1 48130 48585 205 + . . scaffold1318 GLEAN mRNA 47679 59079 0.328272 + . ID=CGI_10008644; scaffold1532 WUBlastX LTR_Gypsy 393043 393513 125 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold962 WUBlastX LTR_Gypsy 830338 830703 73 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L2 192901 193071 50 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LINE_L2 55077 55349 211 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_CR1 1152415 1153068 202 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L2 241819 242652 170 + . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_Pao 23881 24042 31 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L2 192237 192338 24 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LINE_Jockey 118623 119351 94 + . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 57357 57821 96 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Harbinger 54365 54823 103 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 332728 332829 36 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX DNA_TcMar-Tc1 380506 380640 53 - . . . . . -1 -1 -1 . . . C27832 WUBlastX LINE_RTE-BovB 1714 2064 228 + . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX DNA_Sola 25032 25325 119 - . . scaffold40424 GLEAN mRNA 14342 47521 0.651302 - . ID=CGI_10004127; scaffold40424 WUBlastX DNA_Sola 26807 27022 59 - . . scaffold40424 GLEAN mRNA 14342 47521 0.651302 - . ID=CGI_10004127; scaffold1647 WUBlastX DNA_Sola 44153 45175 175 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX DNA_Sola 19770 19820 22 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L2 213356 214165 400 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L2 214180 215496 547 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L2 215492 216538 514 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Gypsy-Cigr 497238 498572 544 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Gypsy-Cigr 498964 500013 930 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 36363 36647 87 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LINE_L1-Tx1 174153 175106 488 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LINE_L1-Tx1 175105 176325 770 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LINE_L1-Tx1 176316 177518 243 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 623550 624077 372 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold142 WUBlastX LTR_Gypsy 56304 56720 237 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 40234 40386 51 - . . . . . -1 -1 -1 . . . scaffold38480 WUBlastX LTR_Ngaro 52831 53943 204 - . . scaffold38480 GLEAN mRNA 52810 53205 1 - . ID=CGI_10002772; C31156 WUBlastX LTR_Gypsy 8715 8891 78 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Marin 261026 261118 26 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LINE_Penelope 122995 123780 177 - . . . . . -1 -1 -1 . . . scaffold1692 WUBlastX LINE_RTE-BovB 30934 31533 112 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LINE_RTE-BovB 51966 52559 228 - . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LINE_RTE-BovB 52600 52653 24 - . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 81017 81406 39 + . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX DNA_TcMar-Tc1 146416 147225 140 - . . . . . -1 -1 -1 . . . scaffold38558 WUBlastX LINE_L1-Tx1 56358 56450 43 + . . . . . -1 -1 -1 . . . scaffold40476 WUBlastX LTR_Gypsy 22351 22710 91 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_DIRS 557259 559391 1258 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Maverick 167541 170123 1596 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LINE_CR1-L2 484609 484782 102 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LTR_Ngaro 157586 157768 29 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_DIRS 58626 59249 121 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_DIRS 59644 60021 114 + . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 42029 42211 80 - . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 42216 42434 154 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LTR_Gypsy 556711 557076 50 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold163 WUBlastX DNA_Harbinger 502753 502866 116 - . . scaffold163 GLEAN mRNA 491676 503218 1 - . ID=CGI_10018631; scaffold163 WUBlastX DNA_Harbinger 502753 502866 116 - . . scaffold163 GLEAN mRNA 492891 503609 0.858032 + . ID=CGI_10018632; scaffold163 WUBlastX DNA_Harbinger 503725 504093 163 - . . . . . -1 -1 -1 . . . C34122 WUBlastX LTR_Gypsy 7868 8233 282 - . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LINE_RTE-X 4060 4287 103 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LINE_RTE-X 4597 5070 118 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_L1-Tx1 299036 299704 93 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Gypsy 72403 76146 1846 + . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LTR_Gypsy 96955 98622 651 + . . . . . -1 -1 -1 . . . C25328 WUBlastX LINE_L2 1 117 94 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 500920 501405 49 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_Harbinger 627031 627075 26 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_Kolobok-IS4 928950 929675 235 - . . scaffold1174 GLEAN mRNA 917037 939462 0.964473 + . ID=CGI_10026072; scaffold750 WUBlastX DNA_P 460853 460978 25 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 1505489 1505860 61 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_NOF 865716 866207 70 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_NOF 866212 866748 142 + . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_L1-Tx1 6664 7485 30 + . . . . . -1 -1 -1 . . . C36530 WUBlastX DNA_IS 23692 24786 1756 + . . . . . -1 -1 -1 . . . C36530 WUBlastX DNA_IS 24764 24976 314 + . . . . . -1 -1 -1 . . . scaffold960 WUBlastX DNA_IS 336191 336403 314 - . . . . . -1 -1 -1 . . . scaffold960 WUBlastX DNA_IS 336381 337475 1756 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 516835 517626 625 - . . . . . -1 -1 -1 . . . scaffold39334 WUBlastX LTR_Gypsy 47568 47873 146 - . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 186374 186541 39 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Ngaro 1067748 1068023 139 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 797317 798003 203 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold146 WUBlastX LINE_RTE-X 7417 7899 139 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 7905 8129 84 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_RTE-BovB 4722 4958 82 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_RTE-BovB 5232 5408 60 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_RTE-BovB 5588 5683 34 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Pao 107089 107199 50 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Pao 172245 172646 281 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold1267 WUBlastX LTR_Pao 358397 360103 1368 + . . . . . -1 -1 -1 . . . scaffold129 WUBlastX LINE_L1 47207 47281 43 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LTR_Ngaro 46501 47670 127 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 85227 85283 28 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_Gypsy 583939 584616 130 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 17925 18053 40 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 984298 984411 42 + . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold102 WUBlastX LINE_RTE-BovB 984700 985005 171 + . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold973 WUBlastX LINE_RTE-BovB 676723 676767 21 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 944732 944821 50 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 217592 217765 59 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold4 WUBlastX LINE_L1-Tx1 254424 254861 72 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 244561 248388 2201 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L2 1141045 1141575 282 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L2 71597 71959 83 - . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LTR_DIRS 58054 58413 156 - . . . . . -1 -1 -1 . . . C14658 WUBlastX LTR_Gypsy 1 261 301 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_Gypsy 449152 449310 24 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 449631 450548 198 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold43026 WUBlastX DNA_Kolobok-IS4 170000 170506 26 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_Kolobok-IS4 171453 171710 114 + . . . . . -1 -1 -1 . . . scaffold766 WUBlastX LINE_L1-Tx1 63095 63571 54 - . . . . . -1 -1 -1 . . . scaffold766 WUBlastX LINE_L1-Tx1 64331 64609 115 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 27582 28436 170 + . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 307912 308247 79 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 308252 308482 47 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_RTE-X 438549 439298 167 - . . . . . -1 -1 -1 . . . scaffold40208 WUBlastX LINE_RTE-X 84495 84935 151 + . . scaffold40208 GLEAN mRNA 72712 87059 0.842413 + . ID=CGI_10003956; scaffold40208 WUBlastX LINE_RTE-X 85102 85359 114 + . . scaffold40208 GLEAN mRNA 72712 87059 0.842413 + . ID=CGI_10003956; scaffold37944 WUBlastX DNA_Sola 49050 49502 205 - . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX DNA_TcMar-Tc1 145427 145978 113 + . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LTR_Gypsy-Cigr 76077 76139 39 - . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LTR_Gypsy 12323 12913 309 + . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold816 WUBlastX DNA_Crypton 4543 5016 213 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_Crypton 4998 5075 29 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Tip100 735651 737207 132 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_CR1-L2 29328 29957 267 + . . . . . -1 -1 -1 . . . C25328 WUBlastX LINE_CR1 1 231 62 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_CR1-L2 753983 754513 124 + . . . . . -1 -1 -1 . . . scaffold268 WUBlastX LTR_Ngaro 66895 67599 225 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_DIRS 302394 303392 180 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold1397 WUBlastX DNA_IS4EU 209719 209871 71 - . . scaffold1397 GLEAN mRNA 206907 222276 0.644927 - . ID=CGI_10017120; scaffold1397 WUBlastX DNA_IS4EU 209868 210170 222 - . . scaffold1397 GLEAN mRNA 206907 222276 0.644927 - . ID=CGI_10017120; scaffold788 WUBlastX DNA_Kolobok-IS4 125250 125447 114 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX DNA_Harbinger 218920 219264 170 + . . scaffold1382 GLEAN mRNA 218944 220078 0.999189 + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 218920 219264 170 + . . scaffold1382 GLEAN mRNA 212938 228080 0.974072 - . ID=CGI_10011177; scaffold1036 WUBlastX DNA_Maverick 207192 207983 231 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy-Cigr 52782 53327 283 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_IS4EU 456238 456531 37 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_IS4EU 456485 456841 179 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX DNA_IS4EU 23579 24037 212 - . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold40794 WUBlastX DNA_IS4EU 24031 24507 85 - . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold323 WUBlastX RC_Helitron 52946 53617 34 + . . scaffold323 GLEAN mRNA 43017 58412 0.999949 + . ID=CGI_10009773; scaffold665 WUBlastX LINE_L1 164054 164728 224 + . . . . . -1 -1 -1 . . . scaffold665 WUBlastX LINE_L1 164724 164792 26 + . . . . . -1 -1 -1 . . . scaffold40564 WUBlastX LINE_L1 8514 9380 222 + . . scaffold40564 GLEAN mRNA 6674 28756 0.488599 + . ID=CGI_10004207; scaffold831 WUBlastX LTR_Ngaro 76597 77064 177 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-X 270480 270812 93 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L2 132992 133678 236 + . . scaffold20 GLEAN mRNA 96944 140245 0.183716 - . ID=CGI_10023563; scaffold20 WUBlastX LINE_L2 132992 133678 236 + . . scaffold20 GLEAN mRNA 129233 205190 0.240843 + . ID=CGI_10023564; scaffold772 WUBlastX LTR_Gypsy 437820 437933 36 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX DNA_TcMar-Fot1 393427 394467 276 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_DIRS 542403 542828 120 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Ngaro 119657 120019 73 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_DIRS 748193 748366 41 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 34178 34747 174 - . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX DNA_Harbinger 2243 2356 50 + . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX DNA_Harbinger 2646 2867 126 + . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX DNA_Harbinger 2849 3172 100 + . . . . . -1 -1 -1 . . . scaffold459 WUBlastX DNA_Merlin 52351 52653 189 - . . scaffold459 GLEAN mRNA 48177 82844 0.45554 + . ID=CGI_10018167; scaffold331 WUBlastX LINE_L1-Tx1 23932 24360 331 + . . . . . -1 -1 -1 . . . scaffold559 WUBlastX DNA_Kolobok 38972 39274 124 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_Proto2 238712 240583 194 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy-Troyk 14260 14679 321 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX DNA_TcMar-Tc1 153261 153593 143 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 149421 149606 162 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_L1 41312 41452 21 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_DIRS 266589 268271 270 - . . . . . -1 -1 -1 . . . scaffold1499 WUBlastX LTR_DIRS 4722 6404 270 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_Kolobok-IS4 431527 431706 34 + . . scaffold1009 GLEAN mRNA 430368 431934 1 + . ID=CGI_10028733; scaffold1741 WUBlastX DNA_IS4EU 47672 48307 211 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_IS4EU 48636 48782 95 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_Kolobok 103289 103600 32 + . . . . . -1 -1 -1 . . . scaffold685 WUBlastX DNA_Kolobok 85154 85354 54 - . . . . . -1 -1 -1 . . . scaffold868 WUBlastX LINE_Penelope 115040 116467 181 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_TcMar-Fot1 204489 205484 324 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX DNA_TcMar-Tc1 257191 257604 160 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX DNA_TcMar-Tc1 257540 257839 142 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_L2 144381 145088 295 - . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 26635 26910 50 + . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LINE_CR1 283940 284926 203 + . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Ngaro 147869 148414 216 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Tip100 736199 736522 192 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 121001 121666 116 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1 93778 94023 61 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-BovB 95423 95668 54 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 438049 438420 134 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 438049 438420 134 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1036 WUBlastX DNA_TcMar-Tc1 173362 173784 98 + . . scaffold1036 GLEAN mRNA 165168 179169 0.593142 - . ID=CGI_10019951; scaffold1630 WUBlastX DNA_hAT 209397 209858 122 - . . scaffold1630 GLEAN mRNA 208694 211851 1 - . ID=CGI_10013425; scaffold1630 WUBlastX DNA_hAT 210030 210818 238 - . . scaffold1630 GLEAN mRNA 208694 211851 1 - . ID=CGI_10013425; scaffold1077 WUBlastX LTR_Gypsy 465203 465370 27 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1-Tx1 84359 84655 26 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 445821 446825 258 - . . . . . -1 -1 -1 . . . scaffold34388 WUBlastX LINE_RTE-X 8180 8350 52 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L1-Tx1 1238813 1239082 82 + . . . . . -1 -1 -1 . . . scaffold38576 WUBlastX LINE_CR1-L2 38787 39002 64 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 269161 269838 204 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 218182 218448 45 - . . . . . -1 -1 -1 . . . scaffold41998 WUBlastX LINE_RTE-X 21259 22215 275 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_CR1-L2 291285 291716 64 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 591060 591764 363 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 43738 44523 370 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Ngaro 600080 601042 260 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold304 WUBlastX LTR_DIRS 121005 121931 313 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_Harbinger 128868 129575 369 + . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX DNA_Harbinger 20850 21533 351 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX DNA_IS4EU 1777 2802 334 + . . scaffold41898 GLEAN mRNA 1759 2697 1 + . ID=CGI_10005830; scaffold35866 WUBlastX DNA_IS4EU 6026 7243 312 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 267006 267434 127 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_PiggyBac 157777 159120 329 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 511509 511697 73 - . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LINE_RTE-X 81957 82250 77 + . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX DNA_hAT-Tip100 3502 5037 195 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_TcMar-Tc1 152662 153687 328 + . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX DNA_hAT-Tip100 30937 31191 98 - . . . . . -1 -1 -1 . . . C36680 WUBlastX LINE_CR1 9674 9937 73 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C29620 WUBlastX LINE_L2 4276 4791 57 + . . . . . -1 -1 -1 . . . C35794 WUBlastX LINE_L2 14477 15241 142 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_TcMar-Marin 115924 116268 184 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 404876 405307 101 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-X 25595 25768 65 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold40476 WUBlastX LTR_Gypsy 26865 27089 104 + . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Gypsy 106526 107140 233 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX DNA_Maverick 486830 487450 253 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_RTE-X 86315 86479 96 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold34224 WUBlastX LTR_Ngaro 11110 11688 276 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Gypsy 497926 498321 145 + . . . . . -1 -1 -1 . . . scaffold39144 WUBlastX DNA_Harbinger 52731 53363 308 + . . . . . -1 -1 -1 . . . scaffold39144 WUBlastX DNA_Harbinger 53386 53619 33 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX DNA_TcMar-Tc1 29712 29852 25 - . . . . . -1 -1 -1 . . . scaffold665 WUBlastX LINE_RTE-BovB 164946 165170 30 + . . . . . -1 -1 -1 . . . scaffold34872 WUBlastX DNA_Sola 2698 3081 190 - . . . . . -1 -1 -1 . . . scaffold34872 WUBlastX DNA_Sola 3287 3391 40 - . . . . . -1 -1 -1 . . . scaffold38290 WUBlastX LTR_Copia 2259 6356 388 + . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX LINE_RTE-X 71885 72163 130 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L1-Tx1 51763 52188 104 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1423 WUBlastX DNA_hAT 194973 195206 30 - . . scaffold1423 GLEAN mRNA 194970 198353 1 - . ID=CGI_10025421; scaffold261 WUBlastX DNA_Harbinger 11976 12251 63 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 38870 39880 178 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_TcMar-Tc1 245843 246193 80 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX DNA_TcMar-Marin 83272 83649 155 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX DNA_TcMar-Marin 83712 84116 238 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_DIRS 1445645 1445851 94 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_DIRS 1445846 1446346 259 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_TcMar-Tc1 18163 18636 284 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Tc1 791358 792068 313 - . . scaffold354 GLEAN mRNA 789292 794805 0.742842 - . ID=CGI_10025738; scaffold40492 WUBlastX LINE_L1-Tx1 89031 89747 363 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 60535 60630 21 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 754512 756035 368 + . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LTR_Gypsy 652 1557 466 + . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LTR_Gypsy-Cigr 49490 50353 370 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Ngaro 318962 319939 346 + . . scaffold1301 GLEAN mRNA 311038 320027 0.984699 - . ID=CGI_10027714; scaffold247 WUBlastX DNA_Harbinger 220425 221126 271 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 221093 221269 85 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_TcMar-Marin 72245 72853 260 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX DNA_Maverick 108291 108899 420 - . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_DIRS 48289 48735 146 + . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_DIRS 48672 49208 229 + . . . . . -1 -1 -1 . . . scaffold30610 WUBlastX DNA_TcMar-Tc1 15 896 336 - . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_L2 1063 1437 93 - . . . . . -1 -1 -1 . . . C33730 WUBlastX LINE_L1-Tx1 14747 14989 61 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1-Tx1 1078623 1078751 22 + . . scaffold419 GLEAN mRNA 1076054 1088367 0.937506 + . ID=CGI_10028386; scaffold933 WUBlastX DNA_Zator 431153 431449 193 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_Zator 432344 432502 101 + . . scaffold933 GLEAN mRNA 432407 433172 1 + . ID=CGI_10016726; scaffold933 WUBlastX DNA_Zator 432603 433148 145 + . . scaffold933 GLEAN mRNA 432407 433172 1 + . ID=CGI_10016726; C31724 WUBlastX LTR_Gypsy 4865 5443 30 - . . . . . -1 -1 -1 . . . scaffold35072 WUBlastX LTR_Gypsy 16369 17655 437 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 89114 89317 224 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_Harbinger 88470 88952 383 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_Harbinger 89320 89430 73 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1-Tx1 138909 139559 97 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold241 WUBlastX LINE_RTE-RTE 476083 477024 60 + . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LTR_Gypsy 48751 48876 28 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold425 WUBlastX DNA_Kolobok 143017 143190 72 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 144020 144703 173 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold9 WUBlastX DNA_P 106685 106963 52 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 92145 92348 104 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 392357 392995 154 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LTR_DIRS 208353 208781 285 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LTR_DIRS 208765 209013 150 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_DIRS 19475 19810 158 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_DIRS 20237 20629 92 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_DIRS 20622 21011 240 - . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1-Tx1 23975 24115 52 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LTR_Pao 168749 169747 499 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 625479 626219 503 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 331297 332157 74 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 283350 284498 385 + . . scaffold332 GLEAN mRNA 282632 290184 0.40014 - . ID=CGI_10020880; scaffold140 WUBlastX LINE_L1-Tx1 373310 374488 359 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_RTE-X 2462 2701 28 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold867 WUBlastX LINE_RTE-X 496782 497594 184 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold262 WUBlastX LINE_L2 23784 24797 407 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 32425 33960 380 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold41594 WUBlastX LINE_L2 28665 29753 379 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 90874 90987 30 + . . . . . -1 -1 -1 . . . scaffold682 WUBlastX LTR_DIRS 5918 6832 415 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 107630 108337 143 + . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX LINE_L1-Tx1 53539 53862 68 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Ngaro 580991 581968 492 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_Ngaro 77597 78112 305 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold35346 WUBlastX DNA_Maverick 18455 19435 177 + . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LINE_RTE-X 329099 329668 149 + . . scaffold43818 GLEAN mRNA 325023 332374 0.596002 + . ID=CGI_10012778; scaffold43818 WUBlastX LINE_RTE-X 329680 330288 221 + . . scaffold43818 GLEAN mRNA 325023 332374 0.596002 + . ID=CGI_10012778; scaffold280 WUBlastX LINE_RTE-X 175903 176973 378 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-BovB 678361 678618 97 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LTR_DIRS 273401 274339 505 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_Ngaro 76122 76778 207 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold145 WUBlastX LTR_Gypsy 108832 109113 114 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 193824 194549 370 + . . . . . -1 -1 -1 . . . scaffold1418 WUBlastX DNA_IS4EU 18287 18667 63 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L1 1294789 1294971 46 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 590345 590527 61 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_DIRS 177970 179007 276 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 143618 143674 20 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L1-Tx1 638252 638518 79 - . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX LTR_Pao 331560 331610 24 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333688 333831 42 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold169 WUBlastX LINE_CR1 1247 2224 391 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 31880 32503 27 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold1894 WUBlastX DNA_Sola 101507 101863 207 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_RTE-X 188729 189136 79 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L1-Tx1 93114 93380 195 + . . . . . -1 -1 -1 . . . scaffold42366 WUBlastX DNA_hAT 72798 73394 394 + . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX DNA_hAT 74654 74950 144 + . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX DNA_hAT 75580 75822 45 + . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold1883 WUBlastX LTR_Gypsy 125282 125479 44 - . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX LINE_L1 44462 44647 108 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; scaffold203 WUBlastX LINE_Penelope 140614 141036 136 - . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LTR_Ngaro 48395 48856 331 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 142444 142635 44 - . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX LTR_Gypsy 13896 14594 26 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold39126 WUBlastX LINE_L1-Tx1 65247 65465 134 - . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX LINE_L1-Tx1 274163 274885 133 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold1125 WUBlastX LINE_L1-Tx1 274945 276555 169 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold1244 WUBlastX LINE_RTE-X 136507 136866 78 - . . . . . -1 -1 -1 . . . C31156 WUBlastX LTR_Gypsy 7717 8712 399 - . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy 113009 113275 30 - . . . . . -1 -1 -1 . . . scaffold39526 WUBlastX LTR_Ngaro 60895 61701 414 - . . . . . -1 -1 -1 . . . scaffold39526 WUBlastX LTR_Ngaro 61840 61914 24 - . . . . . -1 -1 -1 . . . scaffold39526 WUBlastX LTR_Ngaro 61991 62233 100 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 597038 597124 20 + . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L1-Tx1 10457 11191 191 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LTR_Gypsy 177905 178738 506 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 489550 489759 59 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 100097 100672 167 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 54180 54338 132 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy 106902 107201 22 + . . . . . -1 -1 -1 . . . scaffold40150 WUBlastX LINE_CR1-L2 71519 71779 202 - . . . . . -1 -1 -1 . . . scaffold35110 WUBlastX LINE_RTE-X 6650 6880 86 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1010967 1011944 494 - . . scaffold204 GLEAN mRNA 981338 1035223 0.34759 - . ID=CGI_10026142; C29558 WUBlastX LTR_Gypsy 6412 6684 134 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_RTE-X 930769 930957 102 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX DNA_hAT 293036 293167 68 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold456 WUBlastX LTR_Gypsy 141567 141818 207 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold39720 WUBlastX DNA_Harbinger 2918 3868 592 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Ngaro 74022 74393 200 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Ngaro 74388 74726 232 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold1255 WUBlastX DNA_Maverick 351695 352732 611 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Pao 4794 5117 32 + . . . . . -1 -1 -1 . . . scaffold33132 WUBlastX LINE_L1 2 97 68 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 269834 269887 37 + . . . . . -1 -1 -1 . . . scaffold914 WUBlastX LTR_Ngaro 365711 365824 84 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_L1-Tx1 408556 410238 534 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_RTE-BovB 14101 14442 118 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Ngaro 224047 224289 169 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold964 WUBlastX LTR_Ngaro 224293 224508 125 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold42166 WUBlastX LINE_RTE-X 10068 10433 223 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_CR1 221642 221728 21 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Gypsy 518498 518923 281 - . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_RTE-BovB 74975 75523 148 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 643655 643915 107 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LTR_Ngaro 145789 146565 441 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 395777 396496 710 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 41068 41130 24 + . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_L1 256058 256195 80 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold896 WUBlastX LINE_L2 136873 138333 551 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy-Cigr 601888 602325 55 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 67542 68207 507 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LINE_RTE-X 489106 489603 113 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_Harbinger 144502 144576 29 - . . . . . -1 -1 -1 . . . scaffold527 WUBlastX DNA_hAT-hATw 358665 361106 661 - . . scaffold527 GLEAN mRNA 356733 368285 0.999351 + . ID=CGI_10015987; scaffold42090 WUBlastX LINE_L1-Tx1 114606 115640 317 - . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX LINE_L1-Tx1 115642 116757 256 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1-Tx1 613260 614012 146 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1-Tx1 614029 614286 68 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1-Tx1 614632 615075 266 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1-Tx1 615363 615584 41 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 1043343 1043510 31 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold1869 WUBlastX LINE_L1-Tx1 96737 96943 32 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 287190 287399 96 - . . . . . -1 -1 -1 . . . C30324 WUBlastX LINE_L1-Tx1 4249 4908 283 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_CR1-L2 67822 68226 362 - . . . . . -1 -1 -1 . . . scaffold1261 WUBlastX LINE_L1 19760 19942 92 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 8817 8987 33 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 9004 9075 58 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 140354 141217 326 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold1179 WUBlastX LINE_RTE-X 421460 421633 96 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 524474 524575 42 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L1-Tx1 247658 249478 467 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX LTR_Gypsy 149943 150026 21 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold1430 WUBlastX LTR_Copia 7 834 811 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 150003 151355 310 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 151610 152128 212 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-X 421421 421627 66 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 313959 314123 23 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX DNA_IS 696091 696615 803 + . . scaffold625 GLEAN mRNA 692176 702467 0.879994 - . ID=CGI_10023433; scaffold1119 WUBlastX LTR_Gypsy 4695 5438 23 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Gypsy 82520 82627 20 - . . . . . -1 -1 -1 . . . scaffold36598 WUBlastX LTR_Ngaro 29580 30023 163 - . . scaffold36598 GLEAN mRNA 27586 31293 0.99428 - . ID=CGI_10002013; scaffold36598 WUBlastX LTR_Ngaro 30301 31068 379 - . . scaffold36598 GLEAN mRNA 27586 31293 0.99428 - . ID=CGI_10002013; scaffold1316 WUBlastX DNA_IS4EU 152885 153049 115 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX RC_Helitron 357313 358317 356 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 58417 58824 258 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Sola 803845 805458 791 + . . . . . -1 -1 -1 . . . scaffold38116 WUBlastX LTR_Gypsy 15878 16636 592 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 368634 368750 46 - . . scaffold1322 GLEAN mRNA 366517 374727 0.833191 + . ID=CGI_10019476; scaffold271 WUBlastX LINE_CR1-L2 476155 476328 70 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1589 WUBlastX LTR_Gypsy-Cigr 594962 595057 51 + . . scaffold1589 GLEAN mRNA 592118 603104 0.965132 - . ID=CGI_10024122; scaffold43680 WUBlastX LINE_L2 69648 70787 674 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_DIRS 58755 59249 212 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_DIRS 59258 59632 185 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_DIRS 59939 60424 274 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 469870 470433 272 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 43074 43481 27 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1 58702 59106 284 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Gypsy 393394 393627 59 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold271 WUBlastX LINE_L1-Tx1 53458 54717 548 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 54759 55235 46 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 679567 679950 161 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy-Cigr 114948 115190 55 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 340968 342008 152 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 17911 18588 429 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold1084 WUBlastX LINE_RTE-X 104928 105284 229 + . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LINE_RTE-X 105337 106485 657 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_L1-Tx1 55768 57762 627 + . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX LINE_L2 459367 460368 59 + . . . . . -1 -1 -1 . . . scaffold36420 WUBlastX LINE_L2 28826 29071 62 - . . scaffold36420 GLEAN mRNA 25878 32161 0.835531 + . ID=CGI_10001889; scaffold491 WUBlastX LINE_L2 16469 16603 54 + . . . . . -1 -1 -1 . . . scaffold491 WUBlastX LINE_L2 16608 16724 36 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_CR1 513604 514116 39 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_L2 325231 325620 44 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_L1 382498 383091 24 + . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LINE_L1 109118 109429 69 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX DNA_hAT 794793 795287 48 + . . scaffold760 GLEAN mRNA 791400 798427 0.985265 + . ID=CGI_10024012; scaffold1093 WUBlastX LINE_Jockey 45072 45236 22 - . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Jockey 25264 25548 41 - . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX LINE_CR1-L2 158419 158544 34 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_hAT-Tip100 280006 280527 75 + . . scaffold1397 GLEAN mRNA 280234 280587 1 + . ID=CGI_10017121; scaffold599 WUBlastX LTR_Ngaro 356668 356916 62 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LTR_Ngaro 51304 51549 75 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 244725 245282 37 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LTR_DIRS 369720 370220 38 - . . . . . -1 -1 -1 . . . C29506 WUBlastX LINE_L2 6205 6690 35 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LINE_L2 17636 17770 22 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold38492 WUBlastX LTR_Gypsy 8265 8414 49 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LTR_Gypsy 169931 170143 30 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_Harbinger 703407 703607 78 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold1321 WUBlastX DNA_Harbinger 124920 125093 56 - . . scaffold1321 GLEAN mRNA 124908 130065 0.986166 - . ID=CGI_10010661; scaffold1286 WUBlastX DNA_Harbinger 157951 158100 69 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX DNA_Harbinger 376469 376780 37 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 226008 226250 31 + . . . . . -1 -1 -1 . . . scaffold372 WUBlastX DNA_Helitron 200402 200596 42 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_hAT-Blackja 182374 182454 37 - . . scaffold43660 GLEAN mRNA 158768 189009 0.999991 - . ID=CGI_10011666; scaffold1397 WUBlastX DNA_hAT-Tip100 113196 113393 28 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX DNA_Harbinger 181306 181674 26 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_IS4EU 72177 72509 59 - . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX DNA_IS4EU 273008 273181 55 + . . . . . -1 -1 -1 . . . scaffold787 WUBlastX DNA_TcMar-Marin 273987 274319 75 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_Kolobok 78716 78904 52 + . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_Kolobok-Hyd 209851 209913 33 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold633 WUBlastX LINE_L1 56639 57370 35 + . . scaffold633 GLEAN mRNA 49171 62840 0.82948 + . ID=CGI_10004269; scaffold608 WUBlastX LINE_L1-Tx1 54532 55104 28 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_L1 194156 194278 75 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_L1 97181 97372 42 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold209 WUBlastX LINE_L2 9716 9913 78 + . . . . . -1 -1 -1 . . . scaffold1692 WUBlastX LINE_Penelope 34959 35159 24 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LTR_ERV1 20512 20613 47 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX DNA_P 283873 284367 69 - . . scaffold1016 GLEAN mRNA 272595 292035 0.804509 - . ID=CGI_10016891; scaffold1093 WUBlastX LINE_Penelope 404881 405096 28 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold40836 WUBlastX LINE_RTE-X 56408 56635 26 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX DNA_Maverick 12179 12448 31 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX DNA_Maverick 12546 12713 35 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_PiggyBac 8785 8892 30 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_Rex-Babar 1042716 1042775 20 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold40182 WUBlastX LINE_RTE-BovB 18582 18830 36 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold493 WUBlastX LINE_RTE-X 36214 36402 34 + . . scaffold493 GLEAN mRNA 33582 40988 0.999595 + . ID=CGI_10007246; scaffold393 WUBlastX LINE_RTE-X 584237 584365 33 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-X 1238057 1238290 36 + . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX LINE_RTE-X 160202 160270 49 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_RTE-X 206920 207144 25 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_RTE-X 251523 251840 39 + . . scaffold43782 GLEAN mRNA 239878 255426 0.64999 + . ID=CGI_10012371; scaffold42268 WUBlastX LINE_RTE-X 72548 72838 93 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_RTE-X 601939 602154 67 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-X 95472 95621 74 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LTR_DIRS 201258 201410 51 - . . . . . -1 -1 -1 . . . C28450 WUBlastX LINE_L1-Tx1 2206 2424 51 - . . . . . -1 -1 -1 . . . C32216 WUBlastX LINE_R1 3097 3249 22 + . . C32216 GLEAN mRNA 2248 3254 0.999212 + . ID=CGI_10000864; scaffold1715 WUBlastX LINE_L1-Tx1 380070 380186 31 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_Telomeric 464034 464432 67 - . . . . . -1 -1 -1 . . . scaffold533 WUBlastX DNA_TcMar-Tc1 25369 25494 20 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LTR_Gypsy 87973 88062 22 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Gypsy 5250 5897 61 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LTR_Copia 36500 36592 29 + . . . . . -1 -1 -1 . . . scaffold1641 WUBlastX LTR_Copia 233179 233349 30 - . . . . . -1 -1 -1 . . . scaffold855 WUBlastX LTR_Pao 13200 13688 44 - . . scaffold855 GLEAN mRNA 12491 13261 0.978042 - . ID=CGI_10001161; scaffold40680 WUBlastX LINE_CR1 69928 70080 22 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_CR1 319031 319234 21 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L2 114321 114623 89 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_Crypton 727203 728027 55 + . . scaffold100 GLEAN mRNA 726987 729860 0.999661 + . ID=CGI_10026450; scaffold1703 WUBlastX DNA_Crypton 32722 33126 73 - . . . . . -1 -1 -1 . . . scaffold35162 WUBlastX DNA_Crypton 16025 16456 79 - . . scaffold35162 GLEAN mRNA 16160 20596 0.996194 - . ID=CGI_10001426; scaffold1358 WUBlastX DNA_Crypton 193544 193933 76 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Ngaro 205750 206010 78 + . . . . . -1 -1 -1 . . . scaffold388 WUBlastX DNA_Academ 279080 279139 28 + . . scaffold388 GLEAN mRNA 264648 287159 0.999647 + . ID=CGI_10020472; scaffold388 WUBlastX DNA_Academ 279080 279139 28 + . . scaffold388 GLEAN mRNA 270944 331971 0.126469 - . ID=CGI_10020473; C31398 WUBlastX LTR_Gypsy 7010 7144 87 + . . . . . -1 -1 -1 . . . scaffold1491 WUBlastX LTR_Gypsy 47351 47695 52 - . . scaffold1491 GLEAN mRNA 47099 47422 0.999372 - . ID=CGI_10005612; scaffold41400 WUBlastX DNA_IS4EU 116717 116848 60 + . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX DNA_IS4EU 210452 211246 83 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX DNA_IS4EU 69899 70441 85 + . . scaffold41568 GLEAN mRNA 69989 70378 0.618186 + . ID=CGI_10005299; scaffold1728 WUBlastX DNA_Harbinger 112388 112507 31 - . . . . . -1 -1 -1 . . . scaffold98 WUBlastX LINE_R2-Hero 144735 144887 107 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_Harbinger 976904 977128 51 - . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold41898 WUBlastX LTR_Gypsy 99037 99657 68 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold459 WUBlastX LTR_Gypsy 364945 365706 35 - . . . . . -1 -1 -1 . . . C25612 WUBlastX LTR_Gypsy 2672 2791 92 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_Penelope 223325 223540 48 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Jockey 25306 25479 56 - . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX DNA_TcMar-Marin 154496 154663 64 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L1 900155 900385 44 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold1815 WUBlastX DNA_Kolobok-Hyd 149869 149937 23 + . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX DNA_Kolobok-Hyd 150377 150721 35 + . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LINE_RTE-X 7551 7877 85 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 381144 381311 21 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_RTE-X 328324 328758 24 - . . . . . -1 -1 -1 . . . scaffold38824 WUBlastX LINE_RTE-X 22196 22402 48 - . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_RTE-X 88249 88494 48 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold43954 WUBlastX LINE_RTE-X 248433 248609 61 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_PiggyBac 169444 169638 71 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX LTR_ERVK 67652 67864 22 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_RTE-BovB 201511 201669 69 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LINE_RTE-BovB 92818 93006 96 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_RTE-BovB 147753 148202 84 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_RTE-BovB 366740 367075 80 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 312712 312933 69 + . . scaffold101 GLEAN mRNA 308692 328638 0.999351 + . ID=CGI_10021645; scaffold101 WUBlastX LINE_RTE-X 312712 312933 69 + . . scaffold101 GLEAN mRNA 312467 328385 0.843729 - . ID=CGI_10021646; scaffold442 WUBlastX DNA_TcMar-Marin 68069 68149 26 + . . . . . -1 -1 -1 . . . C24900 WUBlastX DNA_Sola 2541 2948 63 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Sola 325747 325914 51 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy 155570 155989 79 + . . . . . -1 -1 -1 . . . scaffold32666 WUBlastX LINE_Penelope 9219 9572 20 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_ERV-Foamy 10930 11478 85 + . . . . . -1 -1 -1 . . . C25178 WUBlastX LTR_Ngaro 1540 1863 76 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX DNA_TcMar-Tc1 19038 19745 75 + . . scaffold1816 GLEAN mRNA 19422 19805 0.999372 + . ID=CGI_10014391; scaffold35490 WUBlastX DNA_TcMar-Marin 4328 4474 46 + . . . . . -1 -1 -1 . . . C34174 WUBlastX LINE_L2 15275 15562 25 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_L2 318295 318402 27 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_L2 318404 318562 44 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 706284 706547 28 + . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LTR_Gypsy 103005 103475 85 - . . . . . -1 -1 -1 . . . scaffold353 WUBlastX LTR_Gypsy 444 857 77 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX DNA_TcMar-Marin 269768 269824 23 - . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LTR_Gypsy 70705 70968 34 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Gypsy 299591 299683 22 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Harbinger 854063 854383 59 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX DNA_Harbinger 148421 148741 59 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_R2-Hero 723229 723381 45 + . . scaffold1710 GLEAN mRNA 716235 735298 0.587067 - . ID=CGI_10022373; scaffold660 WUBlastX DNA_hAT-Tip100 200976 201092 42 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Kolobok-Hyd 617128 617385 37 - . . scaffold880 GLEAN mRNA 617251 619729 0.637182 - . ID=CGI_10022203; scaffold332 WUBlastX DNA_Kolobok 530158 530373 38 - . . . . . -1 -1 -1 . . . scaffold188 WUBlastX LINE_L1 227672 227881 103 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1 1180931 1181437 63 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX DNA_TcMar-Marin 427367 427753 45 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_Jockey 495313 495372 20 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold1174 WUBlastX LTR_Gypsy 477921 478151 84 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_Penelope 643735 643986 46 - . . scaffold146 GLEAN mRNA 638309 652967 0.499837 - . ID=CGI_10024916; scaffold156 WUBlastX LINE_Penelope 363461 363967 42 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 87410 87628 42 + . . . . . -1 -1 -1 . . . scaffold1039 WUBlastX LINE_RTE-BovB 3839 4024 85 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 336917 337651 52 - . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX DNA_Maverick 37124 37459 63 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 233898 234233 63 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_RTE-X 813852 814166 64 + . . scaffold1154 GLEAN mRNA 811283 818578 1 - . ID=CGI_10026191; scaffold1020 WUBlastX LTR_Gypsy 107024 107470 39 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LINE_RTE-X 233457 233555 20 + . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX DNA_TcMar-Tigge 2574 2663 27 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LINE_L1-Tx1 157512 157745 44 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 8428 9033 48 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1-Tx1 777886 778233 23 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_L1-Tx1 83244 83651 25 + . . . . . -1 -1 -1 . . . scaffold952 WUBlastX LINE_L1-Tx1 25090 25434 55 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold43764 WUBlastX DNA_TcMar-Tc1 111901 112098 66 + . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L1-Tx1 36676 37170 33 + . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Copia 91067 91141 20 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold348 WUBlastX LINE_CR1 470112 470444 85 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_hAT-Tip100 17700 18164 87 + . . . . . -1 -1 -1 . . . scaffold42264 WUBlastX LINE_L2 77375 77872 76 + . . scaffold42264 GLEAN mRNA 77336 78370 0.999917 + . ID=CGI_10006519; scaffold107 WUBlastX LINE_CR1 992404 992772 54 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_CR1 725485 725901 77 + . . scaffold496 GLEAN mRNA 713503 727921 0.615833 - . ID=CGI_10022473; scaffold77 WUBlastX LINE_CR1 168490 168567 28 + . . scaffold77 GLEAN mRNA 166912 189780 0.993583 + . ID=CGI_10027970; scaffold916 WUBlastX LINE_CR1-L2 77848 78159 38 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L2 134248 134448 39 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_CR1 160130 160435 22 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; C29882 WUBlastX LTR_Ngaro 1826 2053 84 + . . . . . -1 -1 -1 . . . scaffold42264 WUBlastX LTR_Ngaro 130198 130356 39 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_En-Spm 90697 90960 27 + . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy 30573 30770 21 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_En-Spm 93455 93682 29 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LTR_Gypsy-Cigr 306733 307023 39 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1146803 1147045 90 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 224465 224860 68 + . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX DNA_IS4EU 77844 78257 80 + . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_IS4EU 24790 24924 54 + . . scaffold276 GLEAN mRNA 24613 26343 0.999985 + . ID=CGI_10006434; scaffold186 WUBlastX LTR_Gypsy 9137 9424 75 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_Gypsy 756984 757121 26 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold34942 WUBlastX LTR_Pao 454 810 116 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_Penelope 146349 146810 48 + . . . . . -1 -1 -1 . . . scaffold37500 WUBlastX LINE_L2 31366 31752 92 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold343 WUBlastX DNA_Kolobok 624044 624325 111 - . . scaffold343 GLEAN mRNA 618238 636839 0.461317 - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Kolobok 624044 624325 111 - . . scaffold343 GLEAN mRNA 618887 626946 0.427987 + . ID=CGI_10021769; scaffold1388 WUBlastX LINE_L1-Tx1 198836 199132 21 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_RTE-X 52311 52610 79 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-X 266070 266399 47 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold1750 WUBlastX LINE_RTE-X 492031 492321 62 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_RTE-X 72126 72317 55 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_RTE-X 148113 148220 47 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold1881 WUBlastX LINE_RTE-X 117736 117930 92 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_RTE-X 243181 243444 53 + . . . . . -1 -1 -1 . . . scaffold37092 WUBlastX DNA_Maverick 7797 7943 80 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_RTE-BovB 140971 141207 29 - . . . . . -1 -1 -1 . . . scaffold787 WUBlastX DNA_PiggyBac 82900 83025 56 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 254335 254631 41 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-X 425854 426126 61 - . . scaffold203 GLEAN mRNA 422258 430817 0.3597 + . ID=CGI_10021072; scaffold707 WUBlastX DNA_Sola 37243 37593 90 + . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold1512 WUBlastX LINE_L1-Tx1 76334 76648 31 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX DNA_TcMar-Tc1 19239 19373 20 + . . . . . -1 -1 -1 . . . scaffold912 WUBlastX LINE_L1-Tx1 36218 36430 92 - . . scaffold912 GLEAN mRNA 34749 48869 0.492255 - . ID=CGI_10002926; scaffold858 WUBlastX LINE_L1-Tx1 8263 8808 56 - . . . . . -1 -1 -1 . . . scaffold33958 WUBlastX LTR_Gypsy 8962 9372 119 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX DNA_Zator 143919 144011 21 + . . . . . -1 -1 -1 . . . scaffold1840 WUBlastX LTR_Gypsy 62642 63397 40 - . . . . . -1 -1 -1 . . . C31400 WUBlastX LINE_CR1-L2 3831 4184 63 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_CR1-L2 1515028 1515471 82 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_CR1-L2 590828 591550 31 + . . . . . -1 -1 -1 . . . scaffold37698 WUBlastX LINE_CR1-L2 43512 43892 115 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_CR1-L2 922213 922482 123 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX LINE_L2 23139 23336 107 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Pao 688783 688962 34 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_L2 66286 66966 70 + . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_L2 415262 415405 23 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 1152131 1152340 21 + . . scaffold145 GLEAN mRNA 1139972 1169601 0.998984 + . ID=CGI_10026576; scaffold1009 WUBlastX LTR_DIRS 462419 462808 83 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_Crypton 516343 517020 65 - . . scaffold1014 GLEAN mRNA 485363 517722 0.614012 - . ID=CGI_10020274; scaffold1052 WUBlastX LINE_L2 79895 80110 34 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Gypsy 632294 632497 134 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Harbinger 137494 137877 82 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_L1 588777 589538 26 + . . . . . -1 -1 -1 . . . scaffold37028 WUBlastX DNA_IS4EU 6075 6587 114 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_Kolobok-IS4 105605 105919 48 - . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold12 WUBlastX DNA_hAT-hATw 3252 3350 24 - . . scaffold12 GLEAN mRNA 533 12832 0.970295 + . ID=CGI_10018011; scaffold12 WUBlastX DNA_hAT-hATw 3240 3329 27 - . . scaffold12 GLEAN mRNA 533 12832 0.970295 + . ID=CGI_10018011; scaffold12 WUBlastX DNA_hAT-hATw 3715 4314 39 - . . scaffold12 GLEAN mRNA 533 12832 0.970295 + . ID=CGI_10018011; scaffold198 WUBlastX LINE_L1 762111 762821 73 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_L1 149065 149352 76 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LINE_L1-Tx1 120006 120308 83 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX DNA_TcMar-Marin 214750 214986 65 - . . scaffold457 GLEAN mRNA 213050 222173 0.400336 - . ID=CGI_10014534; scaffold1634 WUBlastX DNA_TcMar-Fot1 91374 91628 100 - . . scaffold1634 GLEAN mRNA 89739 98250 0.998588 + . ID=CGI_10005153; scaffold102 WUBlastX DNA_TcMar-Fot1 754366 754449 26 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_RTE-BovB 134022 134246 99 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_Penelope 1162000 1162704 20 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LINE_Penelope 34001 34348 84 - . . scaffold274 GLEAN mRNA 31807 34983 0.990803 + . ID=CGI_10017008; scaffold1816 WUBlastX LINE_Penelope 368181 368966 76 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_RTE-BovB 42454 42930 90 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Maverick 49343 49636 108 + . . scaffold94 GLEAN mRNA 43492 50308 0.779981 + . ID=CGI_10013908; scaffold1328 WUBlastX LTR_Ngaro 59171 59272 26 + . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_L1-Tx1 125371 125565 37 + . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1-Tx1 144679 144894 52 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX DNA_TcMar-Tc1 349395 349613 83 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 351273 351491 83 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold321 WUBlastX LTR_Gypsy-Troyk 90636 91010 74 - . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_CR1 1103 1465 46 - . . . . . -1 -1 -1 . . . scaffold809 WUBlastX LINE_Penelope 83199 83402 87 + . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX LINE_L1 5987 6322 73 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold533 WUBlastX LINE_L2 95960 96691 94 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold1352 WUBlastX LINE_CR1-L2 68494 68622 21 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_L2 86542 87051 43 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1018 WUBlastX LTR_Ngaro 442052 442276 118 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX LTR_Ngaro 442052 442276 118 + . . scaffold1018 GLEAN mRNA 435432 442583 0.542495 - . ID=CGI_10019773; scaffold1673 WUBlastX LTR_Gypsy-Cigr 52922 53119 125 - . . scaffold1673 GLEAN mRNA 51832 54257 0.720264 - . ID=CGI_10013570; scaffold221 WUBlastX LTR_Gypsy 51849 52457 118 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 140069 140539 107 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold43258 WUBlastX DNA_TcMar-Marin 93359 93922 64 - . . scaffold43258 GLEAN mRNA 90747 124672 0.523441 + . ID=CGI_10009633; scaffold126 WUBlastX DNA_Kolobok 232735 233358 62 - . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_Kolobok 77162 77356 76 + . . . . . -1 -1 -1 . . . scaffold35430 WUBlastX LINE_RTE-BovB 2276 2467 62 - . . . . . -1 -1 -1 . . . scaffold1720 WUBlastX LINE_L1-Tx1 138764 139009 27 + . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_Maverick 29352 29804 90 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_RTE-RTE 45477 45773 42 - . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX LINE_RTE-X 266858 267118 80 + . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LINE_RTE-X 212328 212651 68 + . . scaffold116 GLEAN mRNA 199454 222023 0.8905 - . ID=CGI_10009421; scaffold39744 WUBlastX LINE_RTE-X 23572 23934 71 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 407598 407816 103 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_RTE-X 725713 725931 105 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Ngaro 1023469 1023642 27 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold1067 WUBlastX DNA_Sola 102554 102847 32 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold37722 WUBlastX DNA_Sola 33803 34252 95 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 477127 477255 25 - . . . . . -1 -1 -1 . . . scaffold34350 WUBlastX LTR_Gypsy-Cigr 8592 8828 128 + . . . . . -1 -1 -1 . . . C32614 WUBlastX DNA_TcMar-Tc1 8639 8899 32 - . . . . . -1 -1 -1 . . . scaffold42570 WUBlastX LINE_CR1-L2 16572 16847 93 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold1423 WUBlastX LTR_Gypsy-Cigr 1038711 1039217 127 + . . . . . -1 -1 -1 . . . C32578 WUBlastX LINE_L2 8766 9482 66 + . . C32578 GLEAN mRNA 9396 9944 0.649383 + . ID=CGI_10000916; scaffold37386 WUBlastX LINE_CR1 35404 35526 20 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 9612 10388 67 + . . . . . -1 -1 -1 . . . C32714 WUBlastX LTR_Gypsy 9778 10053 94 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Ngaro 223520 223771 80 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Ngaro 589444 590124 63 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold1633 WUBlastX LTR_DIRS 313424 313840 65 + . . . . . -1 -1 -1 . . . scaffold809 WUBlastX LTR_Ngaro 107974 108255 85 + . . scaffold809 GLEAN mRNA 102798 115167 0.991748 + . ID=CGI_10006490; C34256 WUBlastX DNA_Kolobok 13328 13579 108 - . . . . . -1 -1 -1 . . . scaffold36940 WUBlastX DNA_Harbinger 13177 13434 120 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_MuDR 796026 796304 100 - . . scaffold1301 GLEAN mRNA 795655 798380 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 796026 796304 100 - . . scaffold1301 GLEAN mRNA 781075 819646 0.518044 + . ID=CGI_10027743; scaffold1324 WUBlastX LINE_Penelope 19636 19941 111 + . . scaffold1324 GLEAN mRNA 14127 23793 0.98702 - . ID=CGI_10018371; scaffold372 WUBlastX LINE_Penelope 239925 240260 75 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_TcMar-Tc1 11135 11290 69 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold86 WUBlastX LINE_L2 32735 32800 24 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LINE_RTE-X 70115 70282 41 - . . . . . -1 -1 -1 . . . scaffold1379 WUBlastX LINE_RTE-X 18037 18189 50 - . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_RTE-X 49613 49987 73 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 281084 281698 76 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LINE_RTE-X 20372 21247 25 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_RTE-X 58866 59108 84 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_PiggyBac 231201 231443 88 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 371785 372297 73 - . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_ERV1 11659 12099 142 - . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX LTR_Gypsy-Cigr 8099 8503 134 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_L1-Tx1 82314 82484 20 - . . . . . -1 -1 -1 . . . scaffold1399 WUBlastX LTR_Gypsy 119512 120546 87 - . . scaffold1399 GLEAN mRNA 95731 121782 0.470575 + . ID=CGI_10007050; scaffold1885 WUBlastX LINE_L2 292966 293193 27 - . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Gypsy-Cigr 13509 13619 24 + . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Gypsy-Cigr 13622 14005 74 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX DNA_Academ 2863 3228 138 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_CR1-L2 197308 197406 22 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Ngaro 2821 3144 95 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LTR_Ngaro 92576 93316 80 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold37386 WUBlastX LINE_CR1 35115 35333 146 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LTR_Gypsy 6578 7054 141 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold880 WUBlastX LTR_Gypsy 511785 512042 45 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold976 WUBlastX DNA_Harbinger 275067 275273 122 + . . scaffold976 GLEAN mRNA 266197 282153 0.702349 + . ID=CGI_10014014; scaffold976 WUBlastX DNA_Harbinger 275319 275369 28 + . . scaffold976 GLEAN mRNA 266197 282153 0.702349 + . ID=CGI_10014014; scaffold374 WUBlastX LTR_Gypsy 434120 434575 127 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 1022364 1022414 22 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LTR_Gypsy 291186 291602 118 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_I 396685 396771 25 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Marin 439219 440163 66 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_L1-Tx1 28860 29129 103 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_L1-Tx1 1019225 1019416 71 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold1436 WUBlastX LINE_L1-Tx1 32107 32475 114 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L1 1012635 1012691 21 + . . . . . -1 -1 -1 . . . scaffold35238 WUBlastX LINE_L1-Tx1 1048 1218 66 - . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_L1 323098 323211 24 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_RTE-X 312894 313061 51 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 358581 358961 83 - . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LINE_RTE-X 8382 8564 95 + . . . . . -1 -1 -1 . . . scaffold1374 WUBlastX LINE_RTE-X 35931 36191 105 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX DNA_Sola 443887 444030 105 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Sola 253689 254006 83 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Delta 149529 150692 143 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_L1-Tx1 224775 225041 88 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L1-Tx1 308569 308790 24 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L1-Tx1 308973 309272 30 + . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_DRE 92187 92999 64 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold79 WUBlastX DNA_TcMar-Tc1 273193 273336 34 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L2 592318 592404 20 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_CR1-L2 5564 5965 106 - . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX LINE_L2 37813 38073 115 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_L2 293261 293635 72 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_CR1 632017 632610 96 - . . . . . -1 -1 -1 . . . scaffold1867 WUBlastX LINE_CR1-L2 44771 44926 21 - . . . . . -1 -1 -1 . . . scaffold38210 WUBlastX LINE_L2 22874 23455 31 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold1901 WUBlastX LINE_L2 410000 410404 132 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L2 450511 450819 133 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold664 WUBlastX LTR_Ngaro 577896 578225 66 - . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold983 WUBlastX LTR_Ngaro 116131 116475 78 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_IS4EU 138318 138449 48 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_IS4EU 138520 138867 75 - . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_IS4EU 25631 25855 23 + . . scaffold276 GLEAN mRNA 24613 26343 0.999985 + . ID=CGI_10006434; scaffold37668 WUBlastX DNA_IS4EU 21340 21816 94 + . . . . . -1 -1 -1 . . . scaffold39074 WUBlastX LINE_R2-Hero 47124 47450 86 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Gypsy 183393 183893 134 - . . scaffold286 GLEAN mRNA 182912 187198 0.775448 - . ID=CGI_10015964; scaffold834 WUBlastX LINE_L1 47460 48728 55 - . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 27886 28029 90 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold1774 WUBlastX DNA_Kolobok 50589 50819 34 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX DNA_TcMar-Marin 38532 39062 89 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_RTE-X 247633 248001 106 - . . . . . -1 -1 -1 . . . scaffold38990 WUBlastX LINE_RTE-X 63128 63457 138 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 46843 47358 65 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_PiggyBac 231594 231785 73 + . . . . . -1 -1 -1 . . . scaffold33704 WUBlastX DNA_Maverick 3891 4385 124 + . . . . . -1 -1 -1 . . . scaffold43184 WUBlastX LINE_RTE-BovB 5435 5641 53 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 51736 51981 118 - . . scaffold364 GLEAN mRNA 18377 81368 0.812692 + . ID=CGI_10022675; scaffold117 WUBlastX DNA_Harbinger 37096 37284 26 - . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold34610 WUBlastX LINE_L1-Tx1 18217 18663 71 - . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_L1 85602 86249 55 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_DIRS 861703 862656 90 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy-Cigr 109061 109186 29 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Gypsy-Cigr 173111 173431 163 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 129968 130834 99 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LINE_RTE-BovB 115552 115689 36 + . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LTR_Gypsy 41147 41917 142 + . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold1041 WUBlastX LTR_Gypsy 83749 83823 29 + . . . . . -1 -1 -1 . . . scaffold37432 WUBlastX LINE_L1-Tx1 3227 3553 107 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_Penelope 127145 127231 22 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 127434 127820 55 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold1315 WUBlastX LINE_Penelope 688722 689033 63 - . . scaffold1315 GLEAN mRNA 688539 696190 0.999948 - . ID=CGI_10021627; scaffold38934 WUBlastX DNA_Kolobok 44941 45171 38 + . . scaffold38934 GLEAN mRNA 26982 47955 0.375661 + . ID=CGI_10003097; scaffold198 WUBlastX LTR_DIRS 1531789 1532748 77 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Ngaro 80406 80615 74 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1-Tx1 63946 64275 34 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LTR_Copia 395122 396564 964 - . . . . . -1 -1 -1 . . . scaffold37290 WUBlastX LTR_Ngaro 5138 5986 548 - . . . . . -1 -1 -1 . . . scaffold37290 WUBlastX LTR_Ngaro 5964 6296 215 - . . . . . -1 -1 -1 . . . scaffold415 WUBlastX LTR_Gypsy 72232 73743 958 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LTR_Gypsy 29134 29337 82 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_CR1 452173 452871 452 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy-Cigr 154660 156462 941 + . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_RTE-X 306288 307967 805 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LTR_Gypsy 368618 370177 1023 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold721 WUBlastX LINE_RTE-BovB 447387 447893 311 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy 74089 74154 27 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy-Cigr 66770 67009 93 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold122 WUBlastX LINE_RTE-X 240366 240833 51 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX RC_Helitron 93411 93473 23 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 1023816 1024592 192 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Pao 205367 205690 102 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold113 WUBlastX LTR_Copia 204876 205346 30 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L2 5334 5462 24 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L2 1071240 1071365 32 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LTR_DIRS 388872 389018 45 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_Harbinger 288887 289036 46 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1-Tx1 199456 199761 79 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_TcMar-Marin 688159 688338 44 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_TcMar-Marin 688418 688645 84 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX DNA_TcMar-Tc2 58405 59322 143 - . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold226 WUBlastX LINE_RTE-X 146069 146392 122 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_RTE-X 852703 853026 122 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_RTE-X 476503 476916 130 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_RTE-X 741719 742201 73 + . . . . . -1 -1 -1 . . . scaffold1508 WUBlastX LINE_RTE-X 175077 175127 31 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 705273 705602 59 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_RTE-X 30214 30672 92 + . . scaffold20 GLEAN mRNA 25974 32204 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX LINE_RTE-X 30214 30672 92 + . . scaffold20 GLEAN mRNA 28495 32289 0.880534 + . ID=CGI_10023557; scaffold39640 WUBlastX LTR_DIRS 233 748 97 - . . . . . -1 -1 -1 . . . scaffold41628 WUBlastX LINE_L1-Tx1 97200 97442 33 + . . . . . -1 -1 -1 . . . scaffold41628 WUBlastX LINE_L1-Tx1 97606 98034 63 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_L1-Tx1 244565 245284 33 + . . . . . -1 -1 -1 . . . C31324 WUBlastX DNA_TcMar-Tc1 4479 4952 81 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1-Tx1 14692 15033 105 + . . . . . -1 -1 -1 . . . scaffold43084 WUBlastX LINE_RTE-X 10407 12086 616 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 141226 142380 729 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold605 WUBlastX DNA_Helitron 19454 19657 26 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Pao 101469 102893 532 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy-Cigr 87732 87983 116 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 381133 381810 364 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Pao 71219 71302 27 - . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX LINE_L2 297689 297949 23 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX LINE_L2 297954 298181 86 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_CR1 379418 379747 55 - . . scaffold57 GLEAN mRNA 361110 382565 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_CR1 379418 379747 55 - . . scaffold57 GLEAN mRNA 361168 396087 0.322076 - . ID=CGI_10020553; scaffold1329 WUBlastX LINE_CR1-L2 104103 104204 46 - . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_En-Spm 114267 114683 131 - . . . . . -1 -1 -1 . . . scaffold450 WUBlastX LTR_DIRS 111724 111993 154 + . . scaffold450 GLEAN mRNA 106099 115995 0.996213 - . ID=CGI_10010321; scaffold71 WUBlastX LTR_Ngaro 35428 36228 99 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 320406 320561 43 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 496169 496375 60 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_Kolobok-IS4 464190 464552 53 + . . . . . -1 -1 -1 . . . scaffold1509 WUBlastX LINE_Jockey 99764 99943 24 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX DNA_TcMar-Marin 137384 137455 31 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 137523 137792 84 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold1611 WUBlastX DNA_TcMar-Fot1 364953 365444 83 - . . scaffold1611 GLEAN mRNA 361117 373640 0.975667 + . ID=CGI_10014334; scaffold610 WUBlastX DNA_TcMar-Pogo 30384 31070 164 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 547109 547225 62 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_TcMar-Tc1 194545 194868 117 + . . scaffold184 GLEAN mRNA 186538 196154 0.912721 - . ID=CGI_10014797; scaffold37032 WUBlastX LINE_L1 1047 1649 162 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_RTE-X 16690 16884 22 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_RTE-X 111027 112088 100 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-BovB 232459 232632 181 - . . scaffold658 GLEAN mRNA 228316 233174 0.37443 + . ID=CGI_10018968; scaffold400 WUBlastX DNA_Sola 288120 289382 53 + . . scaffold400 GLEAN mRNA 275762 290092 0.47452 - . ID=CGI_10011441; scaffold36624 WUBlastX LINE_RTE-X 35339 35488 45 - . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_Gypsy 8325 8399 22 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_L1-Tx1 324915 325898 233 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_L1-Tx1 325955 326860 234 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_L1-Tx1 326851 327216 197 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_L1-Tx1 327174 327422 102 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Pao 32607 32870 121 - . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX RC_Helitron 81497 83224 363 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_L1-Tx1 87904 88890 494 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_L1-Tx1 88948 90042 515 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_Sola 487698 487967 100 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_Sola 488305 488736 182 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_Sola 489281 489478 151 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_Sola 489682 490902 606 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_L1-Tx1 35621 35821 143 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_L1-Tx1 35751 37130 705 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_L1-Tx1 37121 37720 44 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LTR_Gypsy 1025171 1025527 232 - . . scaffold1836 GLEAN mRNA 1025204 1064430 0.980298 - . ID=CGI_10026321; scaffold962 WUBlastX LTR_Pao 70569 71024 135 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L2 578602 578748 49 + . . . . . -1 -1 -1 . . . scaffold382 WUBlastX LINE_L2 11026 12036 121 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354108 97 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold32550 WUBlastX LTR_Ngaro 521 613 50 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 644890 645417 133 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 82694 83737 124 + . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX LINE_Penelope 32131 32517 61 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Ngaro 114866 115108 35 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 105681 105998 96 - . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_TcMar-Tc1 95084 95332 74 - . . . . . -1 -1 -1 . . . scaffold250 WUBlastX DNA_TcMar-Tc1 31348 32007 66 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_TcMar-Tc1 3406 3645 50 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Pao 412626 415139 260 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1-Tx1 349669 350712 183 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LINE_L1-Tx1 350700 351287 296 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LINE_L1-Tx1 351256 351963 527 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold632 WUBlastX LINE_RTE-X 274425 275033 124 + . . scaffold632 GLEAN mRNA 271859 278767 0.999129 + . ID=CGI_10018450; scaffold107 WUBlastX LINE_RTE-X 497695 498096 87 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_L1-Tx1 108345 110117 680 - . . . . . -1 -1 -1 . . . scaffold1880 WUBlastX LINE_RTE-X 51551 54814 926 + . . scaffold1880 GLEAN mRNA 5602 92195 0.383639 - . ID=CGI_10008204; scaffold622 WUBlastX LINE_L1-Tx1 411611 412237 441 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 412209 412502 143 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 413214 413570 128 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LINE_CR1 357171 357506 41 - . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LINE_CR1 215871 216932 890 - . . . . . -1 -1 -1 . . . scaffold37722 WUBlastX LINE_L2 43856 44605 30 + . . . . . -1 -1 -1 . . . scaffold40514 WUBlastX DNA_Crypton 67122 67454 100 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Gypsy? 246519 247574 66 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Gypsy 81519 82493 170 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_Penelope 188765 189292 158 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 168774 169211 29 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-BovB 219648 219710 24 - . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LINE_RTE-X 64390 65037 98 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_RTE-X 7208 7741 126 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX DNA_TcMar-Marin 149081 149698 155 - . . . . . -1 -1 -1 . . . scaffold38136 WUBlastX LINE_L1-Tx1 28656 28802 64 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Pao 630117 632414 1045 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Pao 632423 633265 223 - . . . . . -1 -1 -1 . . . C30534 WUBlastX LTR_Copia 5075 7339 1343 - . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 37843 38394 410 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_Gypsy 156200 157954 1354 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 55819 56751 573 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX DNA_Academ 489470 489742 57 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX DNA_Academ 490849 492042 460 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX DNA_Academ 492336 492542 35 + . . scaffold507 GLEAN mRNA 492046 492426 0.51402 + . ID=CGI_10019104; scaffold507 WUBlastX DNA_Academ 492548 493906 632 + . . scaffold507 GLEAN mRNA 492575 493705 0.26572 + . ID=CGI_10019105; scaffold38292 WUBlastX LTR_Gypsy 16688 17242 259 + . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_Gypsy 22360 24516 579 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 90375 92531 578 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 23205 24500 874 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 24913 25701 410 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 136305 136907 112 - . . . . . -1 -1 -1 . . . scaffold1087 WUBlastX LTR_Gypsy 14977 15588 529 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold38274 WUBlastX LINE_CR1-L2 12508 12957 49 - . . . . . -1 -1 -1 . . . scaffold993 WUBlastX LINE_L2 223730 223879 33 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_TcMar-Tc1 87026 87388 74 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX DNA_TcMar-Tc1 87402 87593 113 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold1267 WUBlastX LTR_Ngaro 451116 451274 47 - . . . . . -1 -1 -1 . . . scaffold36598 WUBlastX DNA_Kolobok-IS4 12817 13545 130 - . . scaffold36598 GLEAN mRNA 10870 17380 0.999993 + . ID=CGI_10002012; scaffold1616 WUBlastX LINE_Penelope 60431 60730 46 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold498 WUBlastX LTR_Ngaro 156988 157287 189 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_RTE-X 652775 653251 122 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_RTE-X 83340 83420 40 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_RTE-X 84340 84813 120 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_ERV1 15007 16107 134 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_DIRS 13868 14353 103 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_DIRS 14253 15125 702 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_DIRS 15122 16021 529 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Gypsy 490792 490881 69 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold502 WUBlastX LTR_Gypsy-Cigr 180987 181946 718 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy-Cigr 182540 182911 331 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy-Cigr 183765 183989 46 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy-Cigr 184853 185041 104 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 415327 416907 479 - . . . . . -1 -1 -1 . . . scaffold38884 WUBlastX LTR_DIRS 45866 46405 241 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 46854 47921 688 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 47899 48540 359 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold1399 WUBlastX LTR_DIRS 118333 120354 1398 - . . scaffold1399 GLEAN mRNA 95731 121782 0.470575 + . ID=CGI_10007050; scaffold1018 WUBlastX LTR_Gypsy 552694 552906 30 - . . scaffold1018 GLEAN mRNA 547902 567181 0.39343 + . ID=CGI_10019779; scaffold580 WUBlastX LTR_Pao 543245 543373 59 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold425 WUBlastX LINE_CR1-L2 390286 391170 144 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1-L2 361243 361599 116 - . . . . . -1 -1 -1 . . . C26550 WUBlastX LTR_Ngaro 1735 1956 142 - . . . . . -1 -1 -1 . . . scaffold36510 WUBlastX LTR_DIRS? 30143 30538 191 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_Harbinger 775893 776291 172 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_hAT-hATw 545930 546130 32 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L2 518895 519536 108 + . . scaffold298 GLEAN mRNA 501146 527362 0.635848 + . ID=CGI_10018836; scaffold1767 WUBlastX LINE_L1-Tx1 268953 269561 164 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_RTE-X 5864 6322 101 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 148275 148484 50 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold145 WUBlastX LTR_Ngaro 1054027 1054059 22 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Ngaro 1054092 1054721 67 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_DIRS 96996 97211 127 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L1-Tx1 894540 895085 128 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_Zator 47104 47457 41 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_CR1 407078 408052 111 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_DIRS 709328 709498 62 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 101592 101924 196 + . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LTR_DIRS 41254 41523 113 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy-Gmr1 438326 438484 77 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_hAT-hATw 338388 338573 69 - . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LTR_Gypsy 76246 76368 53 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX DNA_TcMar-Tc2 58591 59280 197 - . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold1788 WUBlastX LINE_L1 47120 47644 162 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold392 WUBlastX LINE_Penelope 775017 775739 160 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_RTE-X 165011 165274 80 + . . . . . -1 -1 -1 . . . scaffold43988 WUBlastX LINE_RTE-X 379043 379585 147 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 65876 66847 61 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_PiggyBac 357592 358227 196 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 437261 437575 80 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437261 437575 80 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold184 WUBlastX DNA_Sola 224098 225732 115 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_DIRS 24214 24807 67 + . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX LINE_L1-Tx1 41047 41346 34 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold156 WUBlastX LINE_CR1-L2 723395 723448 33 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold1698 WUBlastX LTR_Gypsy 75518 76834 639 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 260098 260193 61 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Maverick 166441 166815 115 + . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX DNA_Zator 331240 334059 1412 + . . scaffold1469 GLEAN mRNA 328132 363409 0.937512 - . ID=CGI_10015428; scaffold1469 WUBlastX DNA_Zator 334210 334389 64 + . . scaffold1469 GLEAN mRNA 328132 363409 0.937512 - . ID=CGI_10015428; scaffold1469 WUBlastX DNA_Zator 334853 335020 51 + . . scaffold1469 GLEAN mRNA 328132 363409 0.937512 - . ID=CGI_10015428; scaffold964 WUBlastX LTR_DIRS 53588 53995 101 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LTR_Ngaro 154383 154580 25 + . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_Harbinger 137073 137252 46 - . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Maverick 11065 11211 66 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_Zator 308971 309138 54 - . . scaffold364 GLEAN mRNA 307244 318990 0.924605 - . ID=CGI_10022689; scaffold364 WUBlastX DNA_Zator 309609 309788 57 - . . scaffold364 GLEAN mRNA 307244 318990 0.924605 - . ID=CGI_10022689; scaffold364 WUBlastX DNA_Zator 309939 312758 1396 - . . scaffold364 GLEAN mRNA 307244 318990 0.924605 - . ID=CGI_10022689; scaffold1670 WUBlastX LTR_Gypsy-Cigr 226567 229578 1632 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 568350 570650 1349 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 568350 570650 1349 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold406 WUBlastX LINE_L1-Tx1 89873 91813 1055 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 92239 92871 256 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 92832 93065 131 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy 601958 603694 1145 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L2 241657 242649 140 + . . . . . -1 -1 -1 . . . scaffold60 WUBlastX DNA_Academ 98620 98727 34 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 252053 252424 138 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_MuDR 160122 160667 218 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_TcMar-Tc1 672264 672482 53 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L1-Tx1 4110 4976 78 + . . scaffold867 GLEAN mRNA 3265 13655 0.999351 + . ID=CGI_10026210; scaffold262 WUBlastX LINE_L2 20758 23421 1488 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 69640 70179 369 - . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold266 WUBlastX LTR_Gypsy 277918 279519 629 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_CR1-L2 195212 195784 166 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 63254 63901 207 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold1423 WUBlastX DNA_Harbinger 672954 673139 63 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold522 WUBlastX LTR_Gypsy 556195 556488 119 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold39364 WUBlastX LINE_CR1 57092 57235 22 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_L1 465359 465640 108 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold35070 WUBlastX DNA_PiggyBac 10801 11103 69 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LINE_RTE-X 38515 39465 151 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 264930 265511 173 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L1-Tx1 374856 377222 1398 + . . scaffold601 GLEAN mRNA 357849 378829 0.543194 + . ID=CGI_10026822; scaffold601 WUBlastX LINE_L1-Tx1 377228 378025 191 + . . scaffold601 GLEAN mRNA 357849 378829 0.543194 + . ID=CGI_10026822; scaffold1554 WUBlastX LTR_Gypsy-Troyk 373599 373955 179 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 373958 374125 79 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 374101 375858 908 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 375867 376061 207 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 376298 376423 62 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 376428 376910 387 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_CR1 398454 398639 29 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold106 WUBlastX LINE_L2 707771 708067 112 + . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX LINE_L2 92314 93009 190 + . . . . . -1 -1 -1 . . . scaffold722 WUBlastX LINE_L2 299796 299999 143 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Pao 256932 257414 145 + . . . . . -1 -1 -1 . . . scaffold1643 WUBlastX LTR_Pao 105628 105996 219 + . . scaffold1643 GLEAN mRNA 104668 107388 0.99993 + . ID=CGI_10008364; scaffold157 WUBlastX LTR_Gypsy 5326 6231 217 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1133313 1133585 37 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1062 WUBlastX LINE_L2 18956 19420 220 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 280138 280716 131 - . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX DNA_Harbinger 39374 39613 124 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX RC_Helitron 283661 283765 35 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_L1-Tx1 624720 625223 140 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX LINE_L1-Tx1 625243 625359 64 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold1896 WUBlastX DNA_TcMar-Tc1 436626 436808 65 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_RTE-X 513241 513477 41 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 224940 225005 42 + . . scaffold631 GLEAN mRNA 219246 234334 0.970776 - . ID=CGI_10014178; scaffold433 WUBlastX LINE_RTE-X 1244424 1244972 243 - . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX DNA_TcMar-Tc1 129183 129473 86 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_L1-Tx1 568790 568921 82 + . . . . . -1 -1 -1 . . . scaffold35598 WUBlastX LTR_Gypsy 7584 7904 296 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Pao 82470 83048 321 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold1476 WUBlastX LTR_Gypsy 27715 28281 148 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LTR_Gypsy 28456 28971 96 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 539603 540223 103 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy 67864 68220 113 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold1423 WUBlastX DNA_Harbinger 672131 672466 116 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold42208 WUBlastX LTR_ERV1 97119 97796 111 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 75186 75587 142 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX DNA_MuDR 755288 755839 239 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 722876 723109 33 + . . . . . -1 -1 -1 . . . C34856 WUBlastX LTR_Gypsy-Cigr 8836 9372 42 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold1711 WUBlastX LTR_Pao 98240 98416 62 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LTR_Pao 100893 102932 734 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_PiggyBac 204030 204419 203 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_CR1-L2 76863 77039 106 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_CR1-L2 77086 77505 154 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Ngaro 226235 226327 20 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold933 WUBlastX DNA_En-Spm 442961 443089 45 - . . scaffold933 GLEAN mRNA 438762 447503 0.391135 + . ID=CGI_10016727; scaffold13 WUBlastX DNA_Harbinger 324225 324914 200 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 187639 188076 108 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold449 WUBlastX LINE_L1 136583 137158 236 + . . . . . -1 -1 -1 . . . scaffold133 WUBlastX DNA_TcMar-Tc1 9018 9755 161 + . . . . . -1 -1 -1 . . . C25116 WUBlastX LTR_Ngaro 790 1386 188 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1062782 1063405 246 - . . . . . -1 -1 -1 . . . scaffold66 WUBlastX LINE_RTE-BovB 9012 9212 136 + . . . . . -1 -1 -1 . . . scaffold1573 WUBlastX LINE_RTE-X 38226 38426 34 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L1-Tx1 386726 387997 21 - . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1-Tx1 14204 14368 57 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LTR_Gypsy 29007 33062 2124 - . . scaffold43008 GLEAN mRNA 18841 33811 0.999674 - . ID=CGI_10008458; scaffold1188 WUBlastX LINE_CR1-L2 1046788 1047399 204 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 27467 27874 150 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 27894 28022 71 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 19744 20151 150 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 20171 20299 71 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 308917 309039 20 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Gypsy 43785 43937 27 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold1097 WUBlastX LTR_Gypsy 861518 861784 102 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold626 WUBlastX DNA_Harbinger 392060 392620 106 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_hAT-Ac 72378 72593 72 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_hAT-Ac 72697 73086 121 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_hAT-Ac 73082 73192 31 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_hAT-Ac 73705 73800 43 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_TcMar-Fot1 116502 117134 139 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold42558 WUBlastX LINE_L1 124410 124760 80 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 419988 420200 92 + . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold1753 WUBlastX LINE_L1-Tx1 266270 266488 46 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold1885 WUBlastX LTR_Gypsy 240233 240838 568 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 734526 735200 283 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 735558 735737 51 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 735724 736065 295 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 736089 736226 135 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 737160 737375 144 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 738775 739473 619 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 739460 739741 111 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_CR1 616962 617630 248 - . . scaffold113 GLEAN mRNA 609492 622798 0.993341 - . ID=CGI_10021297; scaffold1184 WUBlastX LINE_CR1 2469 3482 221 - . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LTR_DIRS 334167 335105 245 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 210161 210751 75 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Ngaro 329454 330194 198 + . . scaffold716 GLEAN mRNA 317907 344001 0.842692 + . ID=CGI_10014452; scaffold160 WUBlastX LTR_Ngaro 441159 441830 259 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1700980 1701720 199 + . . scaffold1024 GLEAN mRNA 1693215 1725420 0.440752 - . ID=CGI_10028584; C33172 WUBlastX LTR_Ngaro 12402 13142 199 + . . . . . -1 -1 -1 . . . scaffold33242 WUBlastX LINE_L1-Tx1 13142 13726 235 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Fot1 394813 395082 56 - . . scaffold794 GLEAN mRNA 378971 426999 0.796099 - . ID=CGI_10017158; scaffold406 WUBlastX DNA_MuDR 413964 415016 190 - . . scaffold406 GLEAN mRNA 402781 436007 0.999901 + . ID=CGI_10023847; scaffold140 WUBlastX LINE_RTE-X 99506 99712 80 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_RTE-X 43608 43964 110 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_RTE-X 43972 44712 104 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Pao 1341166 1345104 2289 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Pao 1344787 1345275 46 - . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_CR1-L2 88705 89895 188 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Ngaro 89205 89588 24 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 641072 641425 153 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold1262 WUBlastX DNA_IS4EU 511675 511815 29 + . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold38290 WUBlastX DNA_Kolobok-IS4 14286 14804 89 - . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 11513 12475 229 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX DNA_TcMar-Tc1 19481 19894 128 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX DNA_TcMar-Tc1 19842 20162 74 + . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_L1-Tx1 32358 33080 161 + . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_RTE-X 829 1161 89 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-BovB 112846 113154 100 - . . . . . -1 -1 -1 . . . C34552 WUBlastX LINE_RTE-X 7036 7326 118 - . . . . . -1 -1 -1 . . . scaffold42634 WUBlastX LTR_Gypsy 123490 127368 2359 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_CR1-L2 181760 182359 243 + . . scaffold191 GLEAN mRNA 173889 184742 0.717223 - . ID=CGI_10022414; scaffold406 WUBlastX LTR_Gypsy 63946 64110 49 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold1562 WUBlastX LTR_Gypsy 35225 36559 42 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_DIRS 129208 130668 172 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy 262927 263775 299 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_DIRS 852668 853360 74 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 1455385 1455531 24 - . . . . . -1 -1 -1 . . . scaffold38580 WUBlastX DNA_TcMar-Marin 55757 56122 207 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LINE_L1 171731 172162 291 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1 266875 267072 118 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_Penelope 141152 141406 59 - . . . . . -1 -1 -1 . . . C33510 WUBlastX LINE_RTE-X 5159 5272 46 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX DNA_TcMar-Tc1 261772 262296 146 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold42592 WUBlastX DNA_Harbinger 136555 137049 175 - . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_Harbinger 137112 137327 23 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_RTE-X 266952 267713 221 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Sola 784125 784313 132 + . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_L1-Tx1 89264 89758 102 + . . . . . -1 -1 -1 . . . scaffold36928 WUBlastX LINE_L1-Tx1 35481 35735 72 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy 5287 6663 654 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L2 65890 66387 57 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LTR_Gypsy 96257 97891 216 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold1715 WUBlastX LTR_Gypsy-Cigr 444521 445141 326 + . . scaffold1715 GLEAN mRNA 440859 458026 0.998814 + . ID=CGI_10019678; scaffold248 WUBlastX LINE_Penelope 139508 140179 145 - . . . . . -1 -1 -1 . . . scaffold40938 WUBlastX LINE_L1 5186 5416 96 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LINE_RTE-X 89615 90283 215 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LTR_Pao 391883 392725 61 - . . scaffold43986 GLEAN mRNA 386684 393718 0.985724 - . ID=CGI_10015036; scaffold1188 WUBlastX LINE_R2-Hero 78711 81929 2619 - . . . . . -1 -1 -1 . . . scaffold1375 WUBlastX LTR_Pao 23431 23811 242 - . . . . . -1 -1 -1 . . . scaffold1375 WUBlastX LTR_Pao 25048 25494 227 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 19430 19747 63 - . . scaffold143 GLEAN mRNA 16958 23785 0.985197 + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Gypsy 19806 20975 1055 - . . scaffold143 GLEAN mRNA 16958 23785 0.985197 + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Gypsy 20900 22741 1581 - . . scaffold143 GLEAN mRNA 16958 23785 0.985197 + . ID=CGI_10010006; scaffold471 WUBlastX LTR_Gypsy 256689 257306 212 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 266819 266980 56 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; C31300 WUBlastX LTR_Gypsy 7050 7187 46 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LINE_L1-Tx1 196811 197071 206 + . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX DNA_MuDR 70380 71000 140 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold38558 WUBlastX LINE_RTE-X 53299 54171 227 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 265027 265179 27 - . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_Rex-Babar 325119 325826 281 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Ngaro 9098 9709 261 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy 37439 37492 30 + . . . . . -1 -1 -1 . . . C28002 WUBlastX DNA_Harbinger 743 877 41 + . . . . . -1 -1 -1 . . . C17376 WUBlastX LINE_L1-Tx1 1 477 328 + . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX DNA_Maverick 27372 27998 296 - . . scaffold38130 GLEAN mRNA 25137 30326 0.998369 - . ID=CGI_10002636; scaffold576 WUBlastX LINE_RTE-X 108614 109570 48 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Ngaro 454653 454802 27 + . . . . . -1 -1 -1 . . . C35840 WUBlastX DNA_Harbinger 610 825 32 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 1285 1554 194 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 1641 1814 76 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold847 WUBlastX DNA_Kolobok-IS4 672164 672916 315 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_Penelope 66820 67533 314 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 360388 360666 104 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 361332 361505 69 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 361951 362331 36 + . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX LTR_Gypsy 15036 15101 27 + . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1-Tx1 14931 15242 122 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1-Tx1 212040 213209 150 + . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LINE_L2 6993 8771 233 - . . scaffold1708 GLEAN mRNA 6391 9576 0.777526 + . ID=CGI_10005574; scaffold773 WUBlastX DNA_Crypton 15163 15624 161 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX DNA_Crypton 15685 15855 64 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX DNA_Crypton 16216 16575 110 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold1397 WUBlastX DNA_Sola 307828 308139 41 - . . . . . -1 -1 -1 . . . C33658 WUBlastX LINE_L1-Tx1 6630 6899 32 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1-Tx1 1046073 1046276 28 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold145 WUBlastX DNA_TcMar-Tc1 335350 335733 97 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_TcMar-Tc1 93043 93510 239 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L2 488456 488821 99 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold1345 WUBlastX LTR_Pao 6945 7382 397 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L2 397953 398081 32 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy 601771 602250 39 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1-Tx1 58888 59490 269 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LINE_L1-Tx1 351850 353337 240 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX DNA_Sola 135213 135728 155 + . . scaffold917 GLEAN mRNA 121193 151265 0.227919 + . ID=CGI_10011083; scaffold36140 WUBlastX LINE_CR1 10088 10237 32 - . . scaffold36140 GLEAN mRNA 6624 23811 0.998174 + . ID=CGI_10001795; scaffold42210 WUBlastX LTR_Gypsy 50352 50588 88 + . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LINE_L1-Tx1 100537 100785 104 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 101942 102304 21 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold1489 WUBlastX LTR_Gypsy 362 1180 304 + . . . . . -1 -1 -1 . . . scaffold1489 WUBlastX LTR_Gypsy 1353 1946 80 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX DNA_Sola 114836 116086 383 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_DIRS 347209 348327 226 - . . . . . -1 -1 -1 . . . scaffold1514 WUBlastX LTR_Gypsy 122976 123182 77 + . . . . . -1 -1 -1 . . . scaffold1514 WUBlastX LTR_Gypsy 123239 123607 97 + . . . . . -1 -1 -1 . . . scaffold1514 WUBlastX LTR_Gypsy 123964 124044 48 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Tip100 762934 763110 80 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Tip100 792196 792954 327 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-BovB 444286 444600 86 + . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LTR_Gypsy 252080 252877 398 + . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LTR_Gypsy 49368 49508 39 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_IS4EU 301932 302726 372 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1 327510 328010 72 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_Penelope 87989 88621 258 - . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Maverick 66313 66411 51 + . . . . . -1 -1 -1 . . . C24942 WUBlastX LTR_Pao 7 405 420 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L2 274284 275261 280 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L2 144460 146040 266 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_RTE-X 24557 24697 31 + . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_RTE-X 24717 25472 325 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 499722 499970 73 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_TcMar-Fot1 326993 328420 420 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Maverick 43116 43736 389 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold952 WUBlastX DNA_TcMar-Tc1 17102 17869 273 - . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold121 WUBlastX LINE_L2 173764 174165 209 - . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_IS4EU 87258 87560 115 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_IS4EU 87735 88286 294 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 32012 32215 42 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold43804 WUBlastX LTR_Gypsy 318356 318592 65 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 203002 203775 116 - . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX DNA_TcMar-Tc1 161604 161711 35 - . . scaffold1148 GLEAN mRNA 158300 165919 0.858513 + . ID=CGI_10008249; scaffold99 WUBlastX LINE_L1-Tx1 256791 257543 176 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_L1-Tx1 257999 258556 151 + . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-X 27627 27995 96 + . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_Penelope 9962 10402 70 - . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_Penelope 11347 11856 263 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Gypsy 648916 649083 59 + . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_L2 45447 45722 95 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1005851 1006741 183 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LINE_L1-Tx1 39852 40067 39 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold601 WUBlastX LTR_Gypsy 1145023 1145073 27 - . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-X 24109 24990 150 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold488 WUBlastX LTR_Gypsy 62641 63165 68 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 64603 64785 93 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 469325 469858 156 - . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_RTE-X 8899 9399 116 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 11395 11673 47 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold1179 WUBlastX LINE_RTE-X 421367 421591 61 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 585652 587037 508 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 27691 27729 21 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 517821 519395 478 + . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX DNA_IS4EU 55104 56177 426 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX DNA_TcMar-Fot1 89659 90408 382 + . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_L1-Tx1 155522 156547 435 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_L1 143736 144794 423 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold1533 WUBlastX LTR_DIRS 196838 197785 394 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 43738 44313 406 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX DNA_hAT-Ac 141834 142193 172 - . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX DNA_hAT-Ac 142252 143139 195 - . . . . . -1 -1 -1 . . . scaffold36476 WUBlastX DNA_TcMar-m44 23413 24021 328 + . . . . . -1 -1 -1 . . . scaffold36476 WUBlastX DNA_TcMar-m44 24018 24299 157 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 381123 381278 56 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_Sola 224554 225771 395 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_DIRS 5251 5961 490 - . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LTR_Gypsy 68001 69020 446 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_TcMar-Fot1 1089703 1090089 217 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold1004 WUBlastX LINE_Penelope 281675 282493 332 + . . scaffold1004 GLEAN mRNA 274842 298566 0.682505 - . ID=CGI_10020767; scaffold1004 WUBlastX LINE_Penelope 282628 283137 68 + . . scaffold1004 GLEAN mRNA 274842 298566 0.682505 - . ID=CGI_10020767; scaffold315 WUBlastX LTR_Gypsy 51691 51879 37 + . . . . . -1 -1 -1 . . . C22644 WUBlastX DNA_TcMar-Tc1 177 317 84 - . . . . . -1 -1 -1 . . . C22644 WUBlastX DNA_TcMar-Tc1 286 723 257 - . . . . . -1 -1 -1 . . . scaffold937 WUBlastX LINE_Penelope 984 1826 193 - . . . . . -1 -1 -1 . . . scaffold937 WUBlastX LINE_Penelope 1822 2220 134 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 218465 219424 354 + . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold1526 WUBlastX DNA_TcMar-Tc2 88175 89098 436 - . . scaffold1526 GLEAN mRNA 83330 93705 0.632332 - . ID=CGI_10006187; scaffold152 WUBlastX LINE_L2 1601 2539 424 + . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_Ngaro 76762 76821 42 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold43302 WUBlastX DNA_PiggyBac 59252 59986 144 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold481 WUBlastX LTR_Gypsy-Cigr 961889 962107 21 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L1-Tx1 546603 547367 274 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 223906 224106 47 - . . . . . -1 -1 -1 . . . C31156 WUBlastX DNA_hAT-Ac 1651 1806 89 - . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX DNA_Maverick 30942 31211 144 - . . . . . -1 -1 -1 . . . scaffold577 WUBlastX LTR_DIRS 104146 105651 425 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L2 512605 512808 38 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; C18562 WUBlastX LTR_Gypsy 3 632 576 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy-Cigr 331112 331543 204 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1-Tx1 8682 8798 52 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1-Tx1 8990 9421 217 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1-Tx1 9901 10530 200 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1-Tx1 22798 22914 52 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1-Tx1 23106 23537 217 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1-Tx1 24017 24646 200 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LINE_RTE-X 489379 490404 356 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Zator 28217 28429 56 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Zator 28908 29387 143 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Zator 29398 29832 132 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Zator 30730 30900 107 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Zator 30872 31144 73 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LTR_Ngaro 146845 147822 508 + . . . . . -1 -1 -1 . . . scaffold1696 WUBlastX DNA_TcMar-Marin 26098 26328 57 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 1218051 1219280 299 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1741 WUBlastX DNA_Kolobok 813537 813716 77 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold305 WUBlastX LINE_L1 139902 140642 263 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_L1 140867 141076 47 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold41346 WUBlastX DNA_TcMar-Marin 17676 18080 234 - . . scaffold41346 GLEAN mRNA 15464 31699 0.862252 + . ID=CGI_10004998; scaffold42880 WUBlastX DNA_Maverick 55997 56101 44 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1-Tx1 337245 338666 307 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 87433 87831 233 - . . . . . -1 -1 -1 . . . scaffold40512 WUBlastX DNA_Kolobok-IS4 55381 55599 68 - . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold1714 WUBlastX DNA_IS4EU 217904 218230 42 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 525636 526922 236 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold986 WUBlastX DNA_TcMar-Tc1 186809 187657 291 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_TcMar-Tc1 187657 187788 69 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_RTE-X 8587 9180 264 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX DNA_Kolobok-IS4 136802 137083 71 + . . scaffold1808 GLEAN mRNA 136787 137128 1 + . ID=CGI_10008031; scaffold1808 WUBlastX DNA_Kolobok-IS4 137936 138853 448 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Ngaro 250444 250734 206 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1159 WUBlastX LINE_L1-Tx1 191665 193950 248 + . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LINE_RTE-X 123605 124324 244 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L2 751873 753294 367 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Ngaro 299971 300345 173 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 599430 599483 21 + . . . . . -1 -1 -1 . . . scaffold42634 WUBlastX LINE_RTE-X 154053 154847 537 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_L1-Tx1 364208 364510 53 - . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LTR_Pao 186948 187139 131 - . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LINE_L1-Tx1 12900 13139 160 - . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LINE_L1-Tx1 13135 13692 251 - . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX LINE_L1-Tx1 41405 41797 173 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold1204 WUBlastX LTR_Gypsy 42915 42989 49 - . . . . . -1 -1 -1 . . . scaffold50 WUBlastX DNA_TcMar-Tc1 177157 177417 181 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_Gypsy-Cigr 450981 451547 302 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Ngaro 314043 314927 597 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT-Tip100 5011 6696 588 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_Maverick 755753 756862 593 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold1592 WUBlastX LINE_RTE-BovB 117929 118390 129 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Tip100 763006 763212 50 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 268546 268857 109 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 19700 20065 28 + . . . . . -1 -1 -1 . . . scaffold42166 WUBlastX LINE_RTE-X 4094 5119 335 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_IS4EU 460474 461544 604 - . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LTR_Gypsy 30708 31340 97 + . . . . . -1 -1 -1 . . . scaffold34888 WUBlastX LINE_L1-Tx1 8178 9395 274 + . . . . . -1 -1 -1 . . . scaffold34888 WUBlastX LINE_L1-Tx1 7253 7384 91 + . . . . . -1 -1 -1 . . . scaffold34888 WUBlastX LINE_L1-Tx1 7542 7856 160 + . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LTR_Gypsy 50741 51253 410 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX RC_Helitron 277006 278580 288 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX DNA_Maverick 109577 109813 130 + . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 108579 108878 197 + . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 108963 109409 334 + . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold1352 WUBlastX LTR_Gypsy 145181 146194 464 - . . . . . -1 -1 -1 . . . scaffold38056 WUBlastX LTR_Ngaro 50571 51143 364 + . . . . . -1 -1 -1 . . . scaffold1394 WUBlastX LINE_L1 47735 49372 381 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 109744 110817 485 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 109129 109401 140 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 12278 12361 73 - . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_Gypsy 93740 93781 21 - . . . . . -1 -1 -1 . . . scaffold32356 WUBlastX LTR_Pao 4272 5075 747 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 38150 38344 29 - . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LTR_Gypsy 72447 73622 673 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Gypsy 141346 142326 61 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_RTE-BovB 365430 366185 404 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold457 WUBlastX LINE_RTE-BovB 366622 366912 232 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold695 WUBlastX LINE_RTE-X 344347 344496 65 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Maverick 155269 155706 222 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Maverick 155773 155982 162 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Maverick 156391 157236 346 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Maverick 157254 157460 77 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 216242 216592 124 + . . . . . -1 -1 -1 . . . scaffold292 WUBlastX LINE_L1-Tx1 7432 7944 241 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold1771 WUBlastX LTR_Gypsy 94348 95061 72 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold1324 WUBlastX LTR_Gypsy-Cigr 263313 264734 788 + . . . . . -1 -1 -1 . . . scaffold41660 WUBlastX LINE_L1-Tx1 109683 109904 64 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold71 WUBlastX LINE_RTE-X 265078 265167 61 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 265157 265849 39 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 265701 266918 341 + . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX LINE_L1-Tx1 51836 52237 95 - . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX LINE_L1-Tx1 52266 53051 361 - . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX LINE_L1-Tx1 53371 53805 137 - . . . . . -1 -1 -1 . . . scaffold36452 WUBlastX LTR_Pao 32947 34530 769 + . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX LTR_Gypsy-Cigr 99706 100296 418 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1 125538 126125 304 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 23815 24768 881 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_L2 559170 560471 705 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 321532 322575 807 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_DIRS 87400 87966 405 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Gypsy 72299 72415 21 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Pao 147633 147869 225 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 111312 111530 132 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 950973 951137 27 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 951253 951420 61 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 951533 951730 127 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 952012 953301 619 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold1403 WUBlastX LTR_Gypsy 597207 597473 172 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 597475 598011 261 + . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX LTR_Pao 39483 40415 877 + . . scaffold1440 GLEAN mRNA 38192 43331 1 - . ID=CGI_10008353; scaffold40172 WUBlastX LTR_DIRS 58912 59181 109 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy 191447 191602 22 - . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 55434 55670 203 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 484015 484239 108 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 484472 484774 311 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 484699 485391 348 + . . . . . -1 -1 -1 . . . scaffold1464 WUBlastX LINE_RTE-X 26690 28663 604 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 84001 85218 764 - . . . . . -1 -1 -1 . . . C30294 WUBlastX LTR_DIRS 720 1397 424 + . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LTR_DIRS 40885 41475 286 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy 489954 491180 421 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold501 WUBlastX LINE_RTE-X 580926 581732 194 - . . . . . -1 -1 -1 . . . scaffold1771 WUBlastX LTR_Gypsy 94273 95229 48 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold581 WUBlastX LINE_L1-Tx1 17253 17987 177 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold581 WUBlastX LINE_L1-Tx1 18255 18542 279 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold581 WUBlastX LINE_L1-Tx1 18539 19306 267 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold42448 WUBlastX DNA_hAT-Tip100 29075 29905 157 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_PiggyBac 447245 448867 912 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX DNA_TcMar-Tc2 288976 290136 921 - . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX DNA_hAT-Tip100 33824 34531 294 + . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX DNA_hAT-Tip100 34519 35370 440 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy 64327 64476 33 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold786 WUBlastX LINE_L2 204911 205177 52 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_CR1 340895 341014 27 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_CR1 625469 625873 27 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_CR1 112506 112574 26 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LINE_L2 38768 39145 34 - . . . . . -1 -1 -1 . . . scaffold43452 WUBlastX LINE_CR1-L2 153251 153310 24 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_L2 159567 159827 25 - . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold189 WUBlastX LINE_L2 544144 544230 25 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LTR_DIRS 291466 291594 60 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_DIRS 357974 358495 28 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LTR_Ngaro 469435 469614 75 + . . . . . -1 -1 -1 . . . scaffold40194 WUBlastX LINE_L2 52850 53176 63 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_L2 329912 330151 48 + . . scaffold1832 GLEAN mRNA 329015 334644 0.923451 + . ID=CGI_10018478; scaffold1617 WUBlastX LTR_DIRS 5635 5913 36 + . . . . . -1 -1 -1 . . . scaffold1617 WUBlastX LTR_DIRS 6124 6261 54 + . . . . . -1 -1 -1 . . . scaffold35162 WUBlastX DNA_Crypton 19709 20329 62 - . . scaffold35162 GLEAN mRNA 16160 20596 0.996194 - . ID=CGI_10001426; scaffold226 WUBlastX LTR_Gypsy-Cigr 660663 661022 49 - . . scaffold226 GLEAN mRNA 638426 687523 0.559216 + . ID=CGI_10025370; scaffold1896 WUBlastX LTR_Gypsy 104004 104276 43 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 104293 104652 33 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_En-Spm 1177548 1177637 20 + . . scaffold53 GLEAN mRNA 1177611 1179343 1 + . ID=CGI_10026703; scaffold1754 WUBlastX DNA_Helitron 211725 212102 70 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX RC_Helitron 197128 197340 61 + . . . . . -1 -1 -1 . . . scaffold37028 WUBlastX RC_Helitron 23454 23900 49 + . . . . . -1 -1 -1 . . . scaffold38704 WUBlastX LTR_Gypsy 53370 53465 44 - . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX LTR_Gypsy 119926 120243 64 + . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold531 WUBlastX LTR_Gypsy 338163 338246 42 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy 18020 18313 22 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Harbinger 81217 81447 82 - . . scaffold20 GLEAN mRNA 48308 81255 0.673996 - . ID=CGI_10023561; scaffold40822 WUBlastX DNA_Harbinger 60249 60464 56 + . . . . . -1 -1 -1 . . . scaffold1584 WUBlastX LINE_L1-Tx1 20863 20919 31 + . . scaffold1584 GLEAN mRNA 17588 32625 0.463442 - . ID=CGI_10015070; scaffold44054 WUBlastX DNA_Kolobok-Hyd 73388 73603 31 - . . scaffold44054 GLEAN mRNA 73135 76491 0.974222 - . ID=CGI_10016157; scaffold482 WUBlastX DNA_Kolobok-Hyd 42641 42871 40 + . . scaffold482 GLEAN mRNA 41454 43438 0.427398 + . ID=CGI_10010992; scaffold1616 WUBlastX LINE_L1-Tx1 72922 73506 31 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold43764 WUBlastX LINE_L1 2921 3220 23 + . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_L1-Tx1 480769 480879 27 + . . . . . -1 -1 -1 . . . scaffold888 WUBlastX LINE_L1-Tx1 149517 150029 26 - . . scaffold888 GLEAN mRNA 149355 164657 0.644782 - . ID=CGI_10013450; scaffold43388 WUBlastX LINE_L1 238243 238527 62 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_L1 75831 76013 32 - . . . . . -1 -1 -1 . . . scaffold30078 WUBlastX LINE_L1 6222 6359 53 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_L2 17874 18329 44 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LINE_CR1 125502 125903 73 - . . . . . -1 -1 -1 . . . scaffold39696 WUBlastX DNA_TcMar-Fot1 44723 44962 24 - . . scaffold39696 GLEAN mRNA 41717 59740 0.990766 + . ID=CGI_10003524; scaffold772 WUBlastX LINE_Penelope 53469 53717 38 - . . scaffold772 GLEAN mRNA 32739 66911 0.999897 - . ID=CGI_10016575; scaffold772 WUBlastX LINE_Penelope 53783 53950 38 - . . scaffold772 GLEAN mRNA 32739 66911 0.999897 - . ID=CGI_10016575; scaffold489 WUBlastX DNA_MuDR 514998 515438 61 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_Penelope 1476212 1476652 30 + . . . . . -1 -1 -1 . . . scaffold38774 WUBlastX DNA_P 25442 25537 50 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_P 145486 145866 45 - . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_PiggyBac 23916 24086 56 - . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX DNA_Maverick 937 1431 43 - . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_RTE-X 32524 32829 23 + . . scaffold992 GLEAN mRNA 31527 46122 0.937041 - . ID=CGI_10007504; scaffold1706 WUBlastX LINE_RTE-BovB 70227 70412 77 + . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LINE_RTE-BovB 237209 237445 90 + . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LINE_RTE-X 119232 119402 32 - . . scaffold663 GLEAN mRNA 112609 119255 0.999993 + . ID=CGI_10005265; scaffold1872 WUBlastX LINE_RTE-X 77861 78064 55 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 154246 154458 26 + . . scaffold72 GLEAN mRNA 144323 162117 0.999415 + . ID=CGI_10017838; scaffold445 WUBlastX LINE_RTE-X 408525 408641 30 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_RTE-X 652244 652417 63 - . . . . . -1 -1 -1 . . . C30820 WUBlastX LINE_RTE-X 8014 8358 26 - . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 113085 113504 26 - . . . . . -1 -1 -1 . . . scaffold1751 WUBlastX LINE_RTE-X 15712 16134 24 + . . scaffold1751 GLEAN mRNA 1921 19795 0.705782 - . ID=CGI_10010082; scaffold219 WUBlastX LINE_RTE-X 291701 291937 68 + . . scaffold219 GLEAN mRNA 287966 300533 0.843729 - . ID=CGI_10016628; scaffold66 WUBlastX LINE_RTE-BovB 8480 8617 49 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-X 95478 95690 70 - . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX LINE_RTE-X 28967 29284 88 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold394 WUBlastX LINE_RTE-X 467261 467506 35 - . . . . . -1 -1 -1 . . . scaffold1226 WUBlastX LTR_DIRS 24441 24737 52 - . . . . . -1 -1 -1 . . . scaffold866 WUBlastX DNA_Sola 87388 87609 43 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold609 WUBlastX LTR_DIRS 58303 58449 71 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Ngaro 41300 41653 80 + . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LTR_DIRS 467397 467945 61 + . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX DNA_hAT-Tip100 3153 3533 23 - . . scaffold1597 GLEAN mRNA 296 3638 1 - . ID=CGI_10011762; scaffold714 WUBlastX LINE_L1-Tx1 325922 326167 63 - . . . . . -1 -1 -1 . . . scaffold1052 WUBlastX LINE_L2 74918 75502 53 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold1589 WUBlastX LINE_CR1-L2 61074 61148 48 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 69369 69644 21 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy-Cigr 475645 475785 53 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 59140 59430 29 + . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_L2 321094 321300 44 + . . scaffold43894 GLEAN mRNA 321019 321303 0.997806 + . ID=CGI_10013894; scaffold198 WUBlastX LINE_L2 33929 34216 26 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 756254 756595 67 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LTR_Ngaro 400291 400479 77 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LTR_Gypsy 333262 333372 42 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold370 WUBlastX LTR_Gypsy 121472 121615 69 - . . scaffold370 GLEAN mRNA 114547 129313 0.7324 - . ID=CGI_10025524; scaffold1132 WUBlastX LTR_Gypsy 370094 371023 58 - . . . . . -1 -1 -1 . . . C32270 WUBlastX RC_Helitron 10827 11129 72 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_hAT-Blackja 436852 436995 67 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LINE_I 188302 188601 58 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 553914 554180 97 - . . . . . -1 -1 -1 . . . scaffold60 WUBlastX LINE_Penelope 42778 42918 42 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX DNA_Merlin 268095 268208 66 - . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LINE_L1 39176 39499 66 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L2 474514 475173 20 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX LINE_L2 53244 53423 20 + . . . . . -1 -1 -1 . . . scaffold1181 WUBlastX LINE_L2 108837 109550 20 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1 3388 3732 50 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_L1 599737 600459 47 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1 169298 169510 93 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L1 388140 388853 59 - . . scaffold962 GLEAN mRNA 387756 388286 0.492706 - . ID=CGI_10027645; scaffold962 WUBlastX LINE_L1 388140 388853 59 - . . scaffold962 GLEAN mRNA 388389 388649 0.981828 - . ID=CGI_10027646; scaffold1329 WUBlastX DNA_Kolobok 207496 207828 37 + . . . . . -1 -1 -1 . . . scaffold41806 WUBlastX LINE_RTE-X 1466 1795 52 + . . scaffold41806 GLEAN mRNA 391 2493 0.999723 - . ID=CGI_10005641; scaffold400 WUBlastX LINE_RTE-X 271012 271368 31 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_RTE-X 12164 12370 62 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_RTE-X 1041339 1041587 29 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 67941 68195 28 - . . scaffold1132 GLEAN mRNA 47693 94911 0.303068 - . ID=CGI_10023311; scaffold696 WUBlastX LINE_RTE-X 20322 20603 20 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_Maverick 797682 797822 82 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LINE_RTE-X 49985 50233 59 + . . scaffold1743 GLEAN mRNA 46556 59343 0.501263 + . ID=CGI_10011653; scaffold1665 WUBlastX LINE_RTE-X 241078 241530 42 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_RTE-X 147194 147349 25 - . . scaffold143 GLEAN mRNA 117664 149411 0.999949 + . ID=CGI_10010012; scaffold40186 WUBlastX LINE_RTE-X 13381 13599 79 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_Sola 618746 619159 51 - . . scaffold6 GLEAN mRNA 613145 618796 0.999953 - . ID=CGI_10022330; scaffold1519 WUBlastX DNA_Sola 27745 27987 97 - . . . . . -1 -1 -1 . . . scaffold564 WUBlastX DNA_TcMar-Marin 373281 373352 20 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_RTE-X 1180072 1180233 78 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_L1-Tx1 289537 289620 31 + . . . . . -1 -1 -1 . . . scaffold43130 WUBlastX DNA_TcMar-Tc1 44232 44480 39 + . . . . . -1 -1 -1 . . . scaffold38510 WUBlastX DNA_TcMar-Tc1 20636 20773 35 - . . scaffold38510 GLEAN mRNA 7470 20879 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20636 20773 35 - . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; C31910 WUBlastX DNA_TcMar-Tc2 4128 4259 58 - . . . . . -1 -1 -1 . . . scaffold41766 WUBlastX DNA_TcMar-Tc1 86066 86215 82 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Copia 57907 58107 40 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Pao 95979 96698 31 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_L2 166802 167023 51 - . . scaffold1825 GLEAN mRNA 165468 177148 0.695303 - . ID=CGI_10011147; scaffold716 WUBlastX LINE_CR1-L2 218144 218737 56 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX LINE_CR1-L2 297734 297949 27 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_DIRS 1017484 1017717 51 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold520 WUBlastX LTR_Ngaro 46087 46494 38 - . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX LTR_Ngaro 122252 122476 58 - . . scaffold1656 GLEAN mRNA 116802 126372 0.949613 - . ID=CGI_10006145; scaffold1586 WUBlastX DNA_Crypton 85095 85415 45 + . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX LTR_Ngaro 122733 122861 78 - . . scaffold1656 GLEAN mRNA 116802 126372 0.949613 - . ID=CGI_10006145; scaffold1272 WUBlastX LTR_Ngaro 166458 166871 27 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold1232 WUBlastX LTR_Ngaro 62525 62833 44 + . . scaffold1232 GLEAN mRNA 53895 66601 0.999898 - . ID=CGI_10014987; scaffold279 WUBlastX LTR_DIRS 179837 179968 82 + . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_DIRS 49607 49738 82 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_DIRS 346630 346716 32 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Gypsy 86190 86633 78 - . . . . . -1 -1 -1 . . . scaffold998 WUBlastX LTR_Gypsy 145314 145685 78 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 9413 9532 35 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX DNA_IS4EU 249984 250190 104 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249984 250190 104 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold1641 WUBlastX LTR_Gypsy 232604 233017 97 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_Gypsy 852605 852739 20 + . . . . . -1 -1 -1 . . . scaffold38292 WUBlastX LTR_Gypsy 46272 46946 72 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold885 WUBlastX LTR_Gypsy 249944 250129 47 - . . . . . -1 -1 -1 . . . scaffold33958 WUBlastX LTR_Gypsy 8812 9396 94 + . . . . . -1 -1 -1 . . . scaffold487 WUBlastX DNA_Kolobok 426924 427166 88 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX DNA_TcMar-m44 97110 97334 124 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-BovB 296647 296913 93 + . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX LINE_Penelope 56769 57203 21 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LINE_Penelope 293195 293302 24 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_RTE-X 432745 432942 77 + . . scaffold492 GLEAN mRNA 430618 435399 1 - . ID=CGI_10024835; scaffold1583 WUBlastX LINE_RTE-BovB 508289 508588 49 - . . . . . -1 -1 -1 . . . scaffold42062 WUBlastX LINE_RTE-X 142848 143126 40 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_RTE-X 320748 320825 57 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LINE_RTE-X 20117 20191 27 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold831 WUBlastX LINE_RTE-X 208706 208831 71 - . . . . . -1 -1 -1 . . . scaffold37154 WUBlastX LINE_RTE-X 703 894 49 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_RTE-X 100878 101045 64 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_Sola 276661 276813 106 - . . scaffold363 GLEAN mRNA 270812 292199 0.745243 - . ID=CGI_10019300; scaffold647 WUBlastX DNA_Sola 143018 143086 42 - . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX LTR_Ngaro 8113 8436 65 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold664 WUBlastX LTR_Ngaro 542998 543300 77 + . . . . . -1 -1 -1 . . . scaffold31816 WUBlastX DNA_TcMar-Tc1 9861 10136 40 + . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_TcMar-Tigge 215851 216090 31 + . . scaffold43576 GLEAN mRNA 197837 232524 1 - . ID=CGI_10011134; scaffold1341 WUBlastX LINE_L1-Tx1 5529 5801 21 - . . scaffold1341 GLEAN mRNA 4451 30218 0.992186 + . ID=CGI_10004662; scaffold751 WUBlastX LINE_CR1 146271 146303 23 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 71423 71509 23 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_CR1 432575 432712 21 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; scaffold117 WUBlastX LTR_Gypsy 382816 383238 100 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold192 WUBlastX LTR_Ngaro 19848 20081 88 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX DNA_Harbinger 115028 115261 50 - . . . . . -1 -1 -1 . . . scaffold36716 WUBlastX DNA_Harbinger 19284 19928 56 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 11882 11962 22 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_Penelope 256091 256534 20 - . . . . . -1 -1 -1 . . . scaffold1173 WUBlastX DNA_TcMar-m44 69460 69720 77 + . . scaffold1173 GLEAN mRNA 66584 69723 1 + . ID=CGI_10005745; scaffold99 WUBlastX DNA_TcMar-Tc2 314144 314485 111 + . . . . . -1 -1 -1 . . . scaffold734 WUBlastX LINE_L2 21284 21394 21 - . . scaffold734 GLEAN mRNA 15567 24465 0.477862 - . ID=CGI_10003361; scaffold41534 WUBlastX LINE_L1 103200 103304 29 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 262539 262754 23 - . . scaffold1018 GLEAN mRNA 242940 268764 0.606365 + . ID=CGI_10019762; scaffold630 WUBlastX LINE_RTE-X 55638 55955 29 - . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX LINE_RTE-BovB 126901 127230 66 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_RTE-X 77504 77659 74 + . . . . . -1 -1 -1 . . . scaffold33046 WUBlastX DNA_Maverick 11581 11712 77 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 747023 747796 64 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 596612 596836 57 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_DIRS 462406 462945 83 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold1315 WUBlastX DNA_Sola 30522 30689 81 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold37422 WUBlastX DNA_TcMar-Tc1 1699 2094 75 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_TcMar-Marin 459090 459335 65 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1-Tx1 736991 737179 56 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_L1-Tx1 252308 252676 71 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L1-Tx1 456985 457200 96 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LINE_L1-Tx1 209691 209735 22 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L1-Tx1 626727 626897 28 + . . . . . -1 -1 -1 . . . scaffold775 WUBlastX LINE_L1-Tx1 36917 37201 49 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L2 615818 616324 96 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_CR1-L2 474661 475254 52 + . . . . . -1 -1 -1 . . . scaffold930 WUBlastX LINE_L2 145467 145619 75 + . . . . . -1 -1 -1 . . . scaffold930 WUBlastX LINE_L2 146080 146187 63 + . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_L2 159070 159117 26 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 122649 123197 63 - . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX DNA_TcMar-Tc1 1073 1228 28 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_Merlin 571776 572000 43 + . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold106 WUBlastX LINE_Jockey 551853 551945 25 + . . . . . -1 -1 -1 . . . scaffold40828 WUBlastX LTR_Gypsy 56836 57096 48 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold488 WUBlastX DNA_Academ 71183 71437 44 - . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Ngaro 54782 54988 56 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold504 WUBlastX LTR_Gypsy 486 920 120 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy-Cigr 613431 613940 114 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy 205341 205442 32 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX DNA_Harbinger 196092 196757 78 + . . . . . -1 -1 -1 . . . scaffold40564 WUBlastX DNA_Harbinger 4889 5140 76 + . . scaffold40564 GLEAN mRNA 531 6175 0.983455 + . ID=CGI_10004206; scaffold1138 WUBlastX RC_Helitron 193680 193901 41 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_R2-Hero 69602 69928 72 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_R2-Hero 71379 71438 26 - . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_Kolobok-Hyd 210664 211233 65 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold1619 WUBlastX LINE_L1 167182 167241 22 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX LTR_Ngaro 169809 169991 99 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_Penelope 488988 489242 33 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_MuDR 499978 500646 98 - . . scaffold317 GLEAN mRNA 500226 523403 0.473225 - . ID=CGI_10019359; scaffold41700 WUBlastX DNA 19386 19766 38 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA 19882 20133 55 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_Penelope 10868 11326 45 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_NOF 867170 867664 32 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 285877 286041 109 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX DNA_Maverick 71348 71683 52 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 205040 205228 48 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold672 WUBlastX LINE_RTE-BovB 15171 15458 88 + . . scaffold672 GLEAN mRNA 1455 17003 0.927273 - . ID=CGI_10021021; scaffold42226 WUBlastX LINE_RTE-X 92507 92800 93 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 209832 210044 21 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_Sola 231950 232339 62 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 1662 2258 24 - . . . . . -1 -1 -1 . . . scaffold42788 WUBlastX DNA_TcMar-Tc1 67237 67758 49 + . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold672 WUBlastX DNA_TcMar-Tc2 19070 19486 109 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 375969 376856 87 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L2 824115 824204 42 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_CR1-L2 498266 498736 39 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy-Cigr 179482 179616 32 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy-Cigr 179609 179905 78 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LTR_Gypsy-Cigr 169118 169957 58 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LTR_Gypsy-Cigr 152154 152696 92 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LTR_Gypsy 7050 7229 63 + . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LTR_Gypsy 202859 203065 63 + . . scaffold43696 GLEAN mRNA 200896 208237 0.287333 + . ID=CGI_10011805; scaffold1247 WUBlastX LTR_Ngaro 336 545 43 - . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LINE_CR1 262326 262535 111 + . . scaffold1792 GLEAN mRNA 252899 271519 0.999949 - . ID=CGI_10012749; scaffold4 WUBlastX DNA_Kolobok-IS4 219781 220071 50 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Harbinger 400822 401418 90 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX DNA_Kolobok 110895 111080 91 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_L2 277913 278320 118 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1-Tx1 433116 433460 89 + . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LINE_L1-Tx1 50365 51207 22 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_L1 129703 130467 61 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LINE_RTE-X 186740 187099 39 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_RTE-X 29272 29520 111 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 99381 99683 81 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-BovB 1569377 1569667 39 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-BovB 1569634 1569783 53 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_DRE 79693 80367 76 + . . . . . -1 -1 -1 . . . C30608 WUBlastX LINE_L1-Tx1 5718 6086 91 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_L1-Tx1 83163 83582 62 + . . . . . -1 -1 -1 . . . scaffold33618 WUBlastX LINE_L2 11355 11558 110 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LINE_CR1 84213 85475 44 - . . scaffold1849 GLEAN mRNA 72001 111634 0.818968 - . ID=CGI_10015914; scaffold142 WUBlastX LINE_L2 754799 755044 71 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 179014 179346 47 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-Ant1 340295 340828 133 + . . . . . -1 -1 -1 . . . scaffold37206 WUBlastX DNA_Merlin 14884 15117 110 - . . scaffold37206 GLEAN mRNA 11134 25264 0.606704 + . ID=CGI_10002305; scaffold58 WUBlastX LTR_Pao 388764 389342 93 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_DIRS 809599 810054 36 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_Crypton 1329195 1330103 90 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Ngaro 741161 741850 41 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LTR_DIRS 40743 41144 99 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold980 WUBlastX LTR_Gypsy-Cigr 516235 516420 82 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 1455451 1455525 25 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok-IS4 1477075 1477161 20 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX RC_Helitron 476708 477205 92 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX RC_Helitron 478067 478129 31 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1-Tx1 100222 100443 65 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L1 626607 626861 40 + . . . . . -1 -1 -1 . . . scaffold38908 WUBlastX LINE_L1 50434 50691 76 - . . . . . -1 -1 -1 . . . scaffold38466 WUBlastX DNA_Kolobok-Hyd 3880 4548 37 + . . scaffold38466 GLEAN mRNA 3170 4605 0.999675 + . ID=CGI_10002797; scaffold38934 WUBlastX DNA_Kolobok 48311 48511 41 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_L2 382205 382366 38 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_L2 30213 30839 99 + . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_RTE-BovB 3014 3232 40 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_Penelope 957875 958174 103 + . . scaffold1532 GLEAN mRNA 956349 969868 0.999878 + . ID=CGI_10028276; scaffold321 WUBlastX LINE_Penelope 650541 651119 83 - . . . . . -1 -1 -1 . . . scaffold1163 WUBlastX LINE_RTE-BovB 213936 214172 103 + . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX DNA_Maverick 37078 37533 77 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX DNA_Maverick 54079 54579 127 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Maverick 384707 385042 134 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_Penelope 917595 917795 52 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_RTE-X 257127 257471 85 + . . . . . -1 -1 -1 . . . scaffold40254 WUBlastX LINE_RTE-X 49473 49910 53 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_RTE-X 272521 272805 100 - . . scaffold786 GLEAN mRNA 267472 276923 0.985899 + . ID=CGI_10013705; scaffold1075 WUBlastX LTR_Pao 135208 135729 122 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L1-Tx1 492581 492925 41 + . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_L1 86627 86770 44 - . . . . . -1 -1 -1 . . . scaffold36716 WUBlastX LINE_L2 25418 25687 87 + . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_L2 436077 436388 69 - . . scaffold506 GLEAN mRNA 427628 464588 0.39125 + . ID=CGI_10019276; scaffold42584 WUBlastX LINE_L2 100330 100734 47 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold38010 WUBlastX LINE_CR1 36886 36981 33 - . . . . . -1 -1 -1 . . . scaffold487 WUBlastX LINE_CR1 7628 7738 23 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LTR_Gypsy 491488 491679 153 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LTR_DIRS? 226374 226511 29 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 251972 252418 93 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX DNA_hAT-hATw 145415 146350 30 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Harbinger 115657 115782 75 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 271307 271792 117 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold1897 WUBlastX DNA_Kolobok 396384 396617 52 - . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX LINE_L1-Tx1 36251 36466 127 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-X 628143 628385 75 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold533 WUBlastX LINE_RTE-X 78855 79343 22 - . . . . . -1 -1 -1 . . . scaffold534 WUBlastX DNA_Sola 15798 16232 76 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LINE_L1-Tx1 184750 184974 53 - . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_L1-Tx1 10579 10881 72 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 995024 996226 70 - . . . . . -1 -1 -1 . . . C34200 WUBlastX LINE_L1-Tx1 472 891 80 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L2 15327 16022 114 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold514 WUBlastX LTR_Pao 544 594 21 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LTR_Pao 204542 204925 101 - . . scaffold315 GLEAN mRNA 198637 213809 0.999922 + . ID=CGI_10020410; scaffold1470 WUBlastX LTR_Ngaro 45775 46410 111 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Ngaro 225294 225770 121 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold453 WUBlastX LTR_Ngaro 340016 340300 49 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LTR_Gypsy 72093 72731 121 - . . . . . -1 -1 -1 . . . scaffold1264 WUBlastX LINE_L1 37249 37773 38 + . . scaffold1264 GLEAN mRNA 25666 41185 0.612594 + . ID=CGI_10007170; scaffold944 WUBlastX LINE_L1 135918 136409 43 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L2 481587 481649 22 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Ngaro 409863 410306 110 + . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX DNA_TcMar-Marin 276248 276805 125 + . . scaffold43818 GLEAN mRNA 259212 278747 0.997869 + . ID=CGI_10012774; scaffold1736 WUBlastX LINE_RTE-X 627053 627490 56 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold962 WUBlastX DNA_Maverick 358514 358669 88 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 624916 625074 50 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 625259 625765 64 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-RTE 111265 111600 23 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1-Tx1 412951 413088 37 - . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 26236 26535 140 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold698 WUBlastX LINE_L1-Tx1 202915 203298 116 - . . . . . -1 -1 -1 . . . scaffold43526 WUBlastX LINE_L1-Tx1 42876 43286 70 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold1307 WUBlastX LINE_L1-Tx1 184859 185260 65 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_ERV1 1274610 1274879 131 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_ERV1 1275168 1275308 65 - . . . . . -1 -1 -1 . . . scaffold272 WUBlastX LINE_CR1-L2 46182 46340 37 + . . scaffold272 GLEAN mRNA 32744 62954 0.999882 + . ID=CGI_10003057; scaffold53 WUBlastX LINE_CR1-L2 1070517 1070771 25 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LTR_DIRS 198198 198278 35 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold381 WUBlastX LTR_DIRS 303830 304051 28 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 189596 189658 24 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 189596 189658 24 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold1436 WUBlastX RC_Helitron 116057 116242 172 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_Jockey 71031 71579 128 + . . scaffold1024 GLEAN mRNA 70811 87216 0.389681 + . ID=CGI_10028519; scaffold189 WUBlastX LINE_Penelope 546560 547039 107 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_Penelope 782 1222 109 + . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LINE_Penelope 56472 56813 95 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Kolobok 898660 898824 39 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LINE_L1 266781 266906 53 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold1583 WUBlastX LINE_RTE-X 330557 330670 50 + . . scaffold1583 GLEAN mRNA 329253 340870 0.998703 - . ID=CGI_10025825; scaffold1811 WUBlastX LINE_RTE-X 98774 98863 48 - . . . . . -1 -1 -1 . . . scaffold35238 WUBlastX LINE_L1-Tx1 670 981 47 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1-Tx1 879 968 50 - . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_L1-Tx1 10633 10854 104 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 571203 571463 62 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 469276 469476 20 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold145 WUBlastX LTR_DIRS 1152612 1154594 780 + . . scaffold145 GLEAN mRNA 1139972 1169601 0.998984 + . ID=CGI_10026576; scaffold630 WUBlastX LINE_L1 220260 220445 60 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Ngaro 468026 468316 145 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Ngaro 469207 469614 169 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold410 WUBlastX LINE_CR1-L2 486988 488424 653 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_Gypsy 121189 121455 198 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 121189 121455 198 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold82 WUBlastX LTR_Gypsy 474322 475725 883 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Gypsy 475704 475811 114 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_Penelope 186872 186985 43 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_RTE-X 551253 551924 234 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_RTE-X 551942 553099 512 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_RTE-X 553088 553486 61 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 81690 82790 705 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_RTE-X 139742 142222 766 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_CR1-L2 565996 566232 157 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold1476 WUBlastX LINE_CR1-L2 171114 171506 108 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1016 WUBlastX LINE_CR1-L2 420123 420794 90 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_CR1-L2 543159 543386 89 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_L2 134787 135029 87 + . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold1773 WUBlastX LTR_Pao 73454 73999 132 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX DNA_Academ 308837 309049 59 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX DNA_Academ 309144 309509 57 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX DNA_Academ 309514 309687 95 - . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LTR_DIRS 1229 1561 32 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Ngaro 43501 43809 127 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 218324 218659 146 + . . . . . -1 -1 -1 . . . scaffold265 WUBlastX LTR_Ngaro 69374 70069 143 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold454 WUBlastX LTR_Gypsy 243994 244398 154 + . . . . . -1 -1 -1 . . . scaffold424 WUBlastX DNA_hAT-Ac 95241 95372 35 + . . scaffold424 GLEAN mRNA 91671 98594 0.990391 - . ID=CGI_10014353; scaffold568 WUBlastX DNA_IS4EU 152737 153039 130 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_IS4EU 459421 459753 125 + . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX DNA_IS4EU 285067 285684 136 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_IS4EU 70417 71121 133 - . . . . . -1 -1 -1 . . . scaffold37740 WUBlastX DNA_NOF 8222 8803 112 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold574 WUBlastX DNA_TcMar-Fot1 56151 56384 144 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L1 754914 755021 21 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_L1-Tx1 70273 70497 79 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_RTE-BovB 311070 311555 45 - . . scaffold1671 GLEAN mRNA 303116 311549 0.243132 + . ID=CGI_10015154; scaffold733 WUBlastX LINE_RTE-X 789815 790399 118 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 168473 168739 86 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Sola 1252879 1253034 35 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX DNA_Sola 11433 11654 121 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 146798 146986 111 + . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX LTR_DIRS 32581 33015 151 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX LINE_RTE-X 219902 222376 438 - . . scaffold1210 GLEAN mRNA 219854 220240 0.999999 - . ID=CGI_10014605; scaffold11 WUBlastX LTR_Ngaro 35125 36678 996 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Ngaro 1181734 1182822 841 + . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_RTE-X 90885 92414 219 + . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_RTE-X 15757 15924 45 - . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_RTE-X 15921 16220 73 - . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_RTE-X 17052 17657 359 - . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_RTE-X 18319 18546 56 - . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_RTE-X 18554 18682 46 - . . . . . -1 -1 -1 . . . scaffold36802 WUBlastX DNA_Academ 2981 3289 29 + . . scaffold36802 GLEAN mRNA 2993 3328 0.649473 + . ID=CGI_10002073; scaffold36802 WUBlastX DNA_Academ 3517 3747 33 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_DIRS 419383 419748 50 + . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LINE_L2 30902 31522 136 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 200095 200268 42 - . . . . . -1 -1 -1 . . . scaffold39202 WUBlastX LTR_Gypsy 65388 66077 116 + . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy 91090 91506 178 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_Kolobok 54820 55011 86 + . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold962 WUBlastX LINE_Penelope 39732 39947 54 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 424525 424605 30 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_RTE-BovB 157713 158126 122 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 298878 298973 27 + . . scaffold351 GLEAN mRNA 298327 302475 0.747441 - . ID=CGI_10022603; scaffold1788 WUBlastX DNA_Maverick 37761 38063 128 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_RTE-X 455 688 48 + . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_RTE-X 48209 48691 138 - . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LINE_RTE-X 419676 419963 115 - . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LINE_RTE-X 420079 420366 52 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 234466 234588 24 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_CR1-L2 91922 92161 150 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 180549 180971 68 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 1564315 1564737 68 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 499706 500527 366 + . . . . . -1 -1 -1 . . . scaffold39174 WUBlastX LTR_DIRS 12490 13200 136 + . . . . . -1 -1 -1 . . . scaffold39174 WUBlastX LTR_DIRS 13325 15187 839 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Ngaro 304796 306352 1128 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold925 WUBlastX LTR_Pao 128406 130037 628 + . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold31880 WUBlastX LINE_RTE-X 6368 6649 84 - . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_TcMar-Tc1 57886 57942 28 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Pao 345622 346884 99 + . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX DNA_En-Spm 121281 121475 39 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Gypsy 211458 211670 45 + . . . . . -1 -1 -1 . . . scaffold36196 WUBlastX DNA_hAT-Tip100 5484 5717 165 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_hAT-Tip100 202484 202717 169 + . . . . . -1 -1 -1 . . . scaffold37732 WUBlastX LINE_L1 3932 4069 32 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_MuDR 1478259 1478468 45 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_Proto2 578281 579135 132 - . . . . . -1 -1 -1 . . . C33658 WUBlastX DNA_Sola 11681 12196 91 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; scaffold40270 WUBlastX LINE_L1-Tx1 4698 5111 74 - . . . . . -1 -1 -1 . . . scaffold1559 WUBlastX LINE_L1-Tx1 89438 89995 171 + . . . . . -1 -1 -1 . . . scaffold39500 WUBlastX LTR_Gypsy 18231 18971 236 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Pao 103289 103372 25 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 57771 58037 97 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 73114 73437 186 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold3 WUBlastX RC_Helitron 1302715 1304592 814 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LINE_CR1-L2 123122 123790 135 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L2 129865 130023 47 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L2 130031 130498 107 + . . . . . -1 -1 -1 . . . scaffold40342 WUBlastX LINE_L2 632 790 47 + . . . . . -1 -1 -1 . . . scaffold40342 WUBlastX LINE_L2 798 1265 111 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 518768 518809 22 + . . . . . -1 -1 -1 . . . scaffold42568 WUBlastX LINE_RTE-RTE 11492 11947 105 - . . . . . -1 -1 -1 . . . scaffold60 WUBlastX DNA_Academ 96941 97294 152 - . . scaffold60 GLEAN mRNA 96932 97333 0.999661 - . ID=CGI_10004686; scaffold270 WUBlastX LINE_RTE-BovB 95745 96044 146 + . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 46966 47478 107 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 35306 35866 78 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 35878 36018 82 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold1244 WUBlastX LTR_Ngaro 440028 440399 192 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_DIRS 992519 992659 37 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 568842 569234 196 - . . . . . -1 -1 -1 . . . scaffold41852 WUBlastX DNA_Harbinger 110353 110574 43 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LINE_L2 43540 44364 113 + . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LINE_L2 17699 18346 132 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold1588 WUBlastX DNA_TcMar-m44 323503 323802 185 - . . scaffold1588 GLEAN mRNA 323254 325332 0.989218 - . ID=CGI_10014790; scaffold77 WUBlastX LINE_L1 573594 574286 137 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 189539 189781 51 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Maverick 331048 331740 141 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_RTE-X 559966 560349 112 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_RTE-X 107181 107336 27 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_RTE-X 462111 462188 24 - . . scaffold1737 GLEAN mRNA 447854 462520 0.999999 + . ID=CGI_10018255; scaffold120 WUBlastX LINE_RTE-X 12005 12403 145 - . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-X 13789 14289 66 + . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_TcMar-Tc2 22752 23627 214 - . . scaffold38492 GLEAN mRNA 22581 25357 0.777277 - . ID=CGI_10002800; scaffold1460 WUBlastX LTR_Gypsy 9258 9392 21 + . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_L1-Tx1 236 547 179 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy-Cigr 131580 131666 28 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_TcMar-Tc1 2976 3416 84 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LTR_Gypsy 248426 249118 381 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy-Cigr 149865 150764 425 + . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 70212 70658 394 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX RC_Helitron 90746 92176 614 - . . . . . -1 -1 -1 . . . C33730 WUBlastX LINE_CR1 1 1779 1347 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Gypsy 224613 225200 88 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LINE_L1 185992 188925 1100 + . . scaffold42880 GLEAN mRNA 184633 197786 1 - . ID=CGI_10007998; scaffold34 WUBlastX LINE_CR1-L2 65177 65404 49 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 179071 179445 72 + . . . . . -1 -1 -1 . . . scaffold1646 WUBlastX LTR_ERV1 154614 155540 182 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LTR_Gypsy 452681 453022 47 + . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold406 WUBlastX LTR_DIRS 34112 34399 184 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Ngaro 1039780 1039899 22 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Ngaro 1039982 1040233 67 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Ngaro 1040307 1040711 27 - . . . . . -1 -1 -1 . . . scaffold40080 WUBlastX DNA_Harbinger 67611 67874 124 - . . scaffold40080 GLEAN mRNA 45524 71991 0.583639 - . ID=CGI_10003845; scaffold40080 WUBlastX DNA_Harbinger 67864 67983 23 - . . scaffold40080 GLEAN mRNA 45524 71991 0.583639 - . ID=CGI_10003845; scaffold1750 WUBlastX RC_Helitron 617022 617105 25 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX DNA_Helitron 771161 771580 62 + . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LINE_L1 103393 103527 28 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold1653 WUBlastX LINE_L1 6642 6908 154 - . . . . . -1 -1 -1 . . . scaffold574 WUBlastX DNA_TcMar-Fot1 55939 56121 54 + . . . . . -1 -1 -1 . . . C23216 WUBlastX LTR_Gypsy 886 1221 62 - . . . . . -1 -1 -1 . . . C23216 WUBlastX LTR_Gypsy 1351 1824 98 - . . . . . -1 -1 -1 . . . C23216 WUBlastX LTR_Gypsy 1981 2145 70 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_Penelope 114740 115303 147 + . . scaffold942 GLEAN mRNA 113666 137722 0.300224 + . ID=CGI_10019154; scaffold801 WUBlastX DNA_P 561896 561994 20 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_P 562438 562587 44 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_RTE-X 145069 145569 144 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_RTE-X 762168 762389 84 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 763645 764127 38 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-X 1086423 1087097 96 - . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold1585 WUBlastX DNA_NOF 275849 277066 124 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy 65392 65769 248 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 66913 68427 582 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold457 WUBlastX LTR_Pao 90062 90688 306 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 806881 807672 566 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 807659 808117 225 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 808141 809121 582 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_hAT 63507 63695 28 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Pao 179425 179484 26 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-BovB 1047256 1047666 179 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L2 253355 254548 93 + . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L2 21056 21697 92 - . . scaffold36450 GLEAN mRNA 18407 33594 0.503687 - . ID=CGI_10001980; scaffold733 WUBlastX LTR_ERV1 1020507 1021430 187 + . . . . . -1 -1 -1 . . . scaffold193 WUBlastX LINE_R2-Hero 171203 171397 31 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-Ac 463612 463779 21 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_PiggyBac 205496 205816 204 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 392722 392928 79 - . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_RTE-X 56796 57266 129 + . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX LINE_RTE-X 29855 30316 87 - . . . . . -1 -1 -1 . . . scaffold43520 WUBlastX DNA_TcMar-Tc2 53218 54093 234 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_En-Spm 284149 286428 1415 + . . scaffold934 GLEAN mRNA 282815 291724 0.901828 + . ID=CGI_10015447; scaffold514 WUBlastX LTR_Gypsy-Cigr 299254 303012 1396 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_hAT 1354831 1354956 20 + . . . . . -1 -1 -1 . . . scaffold37426 WUBlastX LTR_DIRS 4969 5301 121 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_IS4EU 210060 210182 23 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 129242 129763 224 - . . . . . -1 -1 -1 . . . scaffold250 WUBlastX DNA_TcMar-Tc1 30998 31339 66 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Marin 419464 419580 30 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Marin 418140 418694 95 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_RTE-X 113752 113886 23 + . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LINE_RTE-X 30974 31585 94 - . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LINE_RTE-X 87671 88210 171 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-X 363465 364052 141 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_RTE-X 175078 175752 131 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX DNA_Sola 31488 32882 86 + . . . . . -1 -1 -1 . . . scaffold1664 WUBlastX LTR_Ngaro 43213 43794 155 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1671927 1672616 125 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy-Cigr 301750 303285 505 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Pao 413061 416843 1538 + . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LTR_Gypsy 69989 70801 235 + . . . . . -1 -1 -1 . . . scaffold839 WUBlastX LTR_Gypsy 92614 93897 803 - . . . . . -1 -1 -1 . . . scaffold839 WUBlastX LTR_Gypsy 93927 94358 336 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Pao 25132 25977 127 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 728887 730047 490 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_CR1 174094 174435 106 + . . . . . -1 -1 -1 . . . scaffold39064 WUBlastX LINE_L2 63864 63947 20 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX LTR_Ngaro 363308 364057 133 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Harbinger 251712 251789 34 - . . . . . -1 -1 -1 . . . scaffold1182 WUBlastX RC_Helitron 47237 48064 198 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_Jockey 8240 8593 92 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_MuDR 588527 588730 53 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold753 WUBlastX LINE_RTE-BovB 94238 94915 147 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_RTE-BovB 238841 238987 42 + . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX LTR_Ngaro 112835 113494 200 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_ERV1 73848 74141 23 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1-Tx1 207007 207099 35 - . . . . . -1 -1 -1 . . . scaffold37430 WUBlastX LTR_Pao 42322 42726 202 - . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX DNA_TcMar-Tc1 146020 146352 156 + . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_L2 188371 189366 105 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold712 WUBlastX LTR_Ngaro 164640 164954 79 + . . . . . -1 -1 -1 . . . scaffold42214 WUBlastX LTR_Gypsy-Cigr 15735 15809 40 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 231008 231622 167 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 98452 99522 230 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold227 WUBlastX LINE_Penelope 305512 305622 41 + . . . . . -1 -1 -1 . . . scaffold227 WUBlastX LINE_Penelope 305660 305737 21 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX LTR_Ngaro 154484 154960 211 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-X 938631 939293 173 - . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_L1-Tx1 171225 171392 22 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1-Tx1 115176 115757 328 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1-Tx1 116483 117829 753 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1-Tx1 117796 118812 332 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy 173111 173776 118 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1 131900 131974 43 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX DNA_Kolobok 245737 245979 136 + . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold1816 WUBlastX DNA_NOF? 273138 273740 137 + . . . . . -1 -1 -1 . . . C30816 WUBlastX LINE_RTE-X 7266 7523 53 + . . . . . -1 -1 -1 . . . C30816 WUBlastX LINE_RTE-X 7597 7890 35 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 424337 424792 119 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold983 WUBlastX LTR_Gypsy 10769 10918 55 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX DNA_TcMar-Marin 185094 185267 70 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1-Tx1 186896 187309 105 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1860 WUBlastX LINE_L1-Tx1 97081 97206 38 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1898 WUBlastX LTR_Pao 312140 312553 100 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold513 WUBlastX LTR_Pao 10699 11019 79 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold1643 WUBlastX LTR_Pao 105040 106002 190 + . . scaffold1643 GLEAN mRNA 104668 107388 0.99993 + . ID=CGI_10008364; scaffold40420 WUBlastX LTR_DIRS 1 393 247 - . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_CR1 31298 31429 38 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LTR_Gypsy 57876 58721 197 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LTR_Ngaro 354299 354748 228 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Ngaro 303940 304509 209 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold975 WUBlastX LTR_Ngaro 251861 252508 219 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 212142 213014 198 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Harbinger 859780 860142 222 + . . . . . -1 -1 -1 . . . scaffold1811 WUBlastX DNA_IS4EU 65295 66002 198 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX DNA_hAT-Tip100 147168 147767 257 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_TcMar-Tc1 140158 140700 238 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LINE_Penelope 222225 222557 75 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_Penelope 68153 68248 48 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_Penelope 68221 69036 193 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 307831 308238 67 - . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_RTE-X 110175 110351 50 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold1307 WUBlastX DNA_TcMar-Tc1 585017 585700 185 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_CR1 200578 201588 798 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_Rex-Babar 487684 488733 169 - . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX LTR_Ngaro 19909 20244 110 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_hAT-Tip100 561440 562069 209 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX DNA_hAT-hATw 525548 526513 40 - . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX DNA_IS4EU 82186 82791 234 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_Harbinger 101407 101640 114 - . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 85152 85253 21 + . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX LTR_Gypsy 36429 36818 226 + . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold43648 WUBlastX DNA_Kolobok 232888 233013 73 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold34314 WUBlastX LINE_RTE-X 10591 11343 169 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 281798 282160 108 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold610 WUBlastX LINE_RTE-X 95211 95564 119 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_RTE-X 95582 95998 62 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_RTE-X 96283 96555 27 + . . . . . -1 -1 -1 . . . scaffold38510 WUBlastX DNA_Sola 28327 28410 28 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold1094 WUBlastX DNA_hAT 660058 660246 229 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 660058 660246 229 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 660407 660637 257 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 660407 660637 257 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 661027 661164 151 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661027 661164 151 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 661878 662102 273 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661878 662102 273 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 662405 662617 299 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 662405 662617 299 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 662848 663012 170 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 662848 663012 170 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 663211 663729 703 - . . scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 663211 663729 703 - . . scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; C33580 WUBlastX LTR_Pao 6027 7292 605 + . . . . . -1 -1 -1 . . . C33580 WUBlastX LTR_Pao 8105 9748 1201 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 104744 106642 1436 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 155261 156121 81 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy-Cigr 174170 174235 41 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy-Cigr 174222 174380 56 - . . . . . -1 -1 -1 . . . C34458 WUBlastX LTR_DIRS 12353 13507 209 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_Academ 445101 445694 193 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_Academ 445706 445819 39 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_CR1 1085727 1085909 42 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 209781 210161 124 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_TcMar-Marin 115327 115788 184 - . . . . . -1 -1 -1 . . . scaffold38136 WUBlastX LINE_L1-Tx1 28876 29295 221 - . . . . . -1 -1 -1 . . . C28574 WUBlastX LINE_L1-Tx1 2826 3236 101 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 193749 194063 119 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX RC_Helitron 47149 47400 65 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_Gypsy-Cigr 94911 96068 753 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_Gypsy-Cigr 96172 97410 1158 - . . . . . -1 -1 -1 . . . scaffold43530 WUBlastX LINE_L1-Tx1 209661 210992 691 + . . . . . -1 -1 -1 . . . scaffold43530 WUBlastX LINE_L1-Tx1 210991 213405 1116 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_CR1 74536 74691 78 + . . scaffold152 GLEAN mRNA 60138 75351 0.999676 - . ID=CGI_10014894; scaffold150 WUBlastX LTR_Gypsy-Cigr 82080 82622 256 + . . . . . -1 -1 -1 . . . scaffold837 WUBlastX LTR_Gypsy 8570 8848 54 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1605399 1605533 36 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold1554 WUBlastX DNA_hAT-hATw 82036 82611 218 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX DNA_hAT-hATw 82616 82825 50 + . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_hAT-Ac 106034 106276 173 + . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX DNA_IS4EU 37946 38419 268 + . . scaffold39358 GLEAN mRNA 36445 38443 0.716437 + . ID=CGI_10003326; scaffold1832 WUBlastX DNA_Harbinger 397482 397715 60 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_Harbinger 398380 398778 182 + . . . . . -1 -1 -1 . . . scaffold465 WUBlastX DNA_Kolobok-IS4 68965 69444 58 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 708256 708648 117 - . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LTR_Gypsy 21012 21398 111 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy 490933 491892 212 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold40916 WUBlastX LINE_L1-Tx1 39214 39924 493 + . . scaffold40916 GLEAN mRNA 5250 52256 0.246631 + . ID=CGI_10004570; scaffold40916 WUBlastX LINE_L1-Tx1 39960 42962 1372 + . . scaffold40916 GLEAN mRNA 5250 52256 0.246631 + . ID=CGI_10004570; scaffold39858 WUBlastX LTR_Pao 3746 4330 176 + . . . . . -1 -1 -1 . . . scaffold29372 WUBlastX LTR_Ngaro 2827 2910 39 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-BovB 372057 372167 81 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-BovB 372875 373096 175 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 51828 52367 206 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_L1 200099 200857 192 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold164 WUBlastX LINE_RTE-X 704653 705063 103 - . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX DNA_Sola 115533 116642 114 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX DNA_TcMar-Tc1 303684 304319 219 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Pao 203702 203848 165 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold626 WUBlastX LTR_Pao 581031 581468 253 - . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L2 831570 832592 185 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1 169577 170299 200 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold640 WUBlastX LTR_Gypsy 146319 147791 1029 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_CR1 58447 58803 36 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 597366 597509 41 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; C35760 WUBlastX LTR_Gypsy 13380 13691 278 - . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_L1-Tx1 88360 89283 224 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_Penelope 121681 122004 76 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-X 270851 271342 114 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-X 169222 169749 71 + . . scaffold689 GLEAN mRNA 162763 181677 0.999 - . ID=CGI_10014826; scaffold1605 WUBlastX LINE_L1-Tx1 456614 456763 61 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L1-Tx1 1042999 1043502 83 - . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX LTR_Ngaro 18017 18427 124 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 29910 30245 30 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_Kolobok-IS4 54219 54401 63 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_L1 36487 36591 37 - . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX LINE_RTE-X 39369 40229 120 + . . . . . -1 -1 -1 . . . scaffold39536 WUBlastX LINE_RTE-X 71143 71361 104 + . . . . . -1 -1 -1 . . . scaffold39536 WUBlastX LINE_RTE-X 71466 71804 218 + . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX DNA_PiggyBac 18525 18866 170 - . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX DNA_PiggyBac 18917 19138 138 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 328475 331114 1761 - . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_Gypsy 25828 27156 1124 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LTR_Gypsy 377303 379453 1258 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LTR_Gypsy 379465 380538 163 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Pao 144619 145167 163 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_DIRS 557537 557755 94 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_DIRS 557934 558458 204 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 209043 209279 89 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Harbinger 119447 119752 75 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_Kolobok-IS4 599141 599668 81 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_CR1 129211 129528 105 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold29 WUBlastX LINE_RTE-X 12736 13299 221 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 583945 584229 30 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; C26460 WUBlastX LTR_Ngaro 3029 3700 259 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Ngaro 454119 454331 163 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 40283 40366 31 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LTR_DIRS 139544 139816 46 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 139957 140142 110 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 140960 141328 119 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 141412 141546 23 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold237 WUBlastX LINE_L1-Tx1 440065 441258 204 + . . . . . -1 -1 -1 . . . scaffold36748 WUBlastX LINE_L2 5057 6550 260 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_L2 83951 84331 60 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-Ac 487963 488073 53 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold40424 WUBlastX LINE_L1 84172 85365 111 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 50448 50873 193 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_DIRS 593495 593749 149 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_DIRS 593721 594176 159 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 543047 543766 293 + . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Ngaro 178115 178747 183 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX DNA_Sola 31899 32996 282 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX DNA_Zator 40418 41242 182 + . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_CR1 191684 191770 24 - . . . . . -1 -1 -1 . . . scaffold39212 WUBlastX DNA_hAT-Tip100 53097 53489 35 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_hAT-Tip100 54581 55246 264 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold1797 WUBlastX RC_Helitron 48280 48771 364 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy 175734 176678 353 - . . . . . -1 -1 -1 . . . scaffold130 WUBlastX LINE_RTE-X 636 1370 105 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 91277 92149 77 - . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_TcMar-Tc1 230365 230910 155 + . . . . . -1 -1 -1 . . . scaffold42096 WUBlastX LINE_L2 108923 109411 154 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 108923 109411 154 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold230 WUBlastX DNA_hAT-Tip100 129566 129691 44 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold241 WUBlastX LTR_Gypsy 520299 520475 32 - . . . . . -1 -1 -1 . . . scaffold35926 WUBlastX LINE_RTE-X 978 1118 56 - . . . . . -1 -1 -1 . . . scaffold39598 WUBlastX DNA_Kolobok 28370 28492 73 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 544346 545797 142 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_CR1 257491 257949 125 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 38838 39371 240 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1-Tx1 8507 8905 45 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_TcMar-Marin 725930 726583 196 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_TcMar-Marin 726763 727017 149 + . . . . . -1 -1 -1 . . . scaffold29598 WUBlastX LINE_RTE-X 2770 3006 135 - . . scaffold29598 GLEAN mRNA 1487 5790 0.999943 - . ID=CGI_10000548; scaffold6 WUBlastX DNA_TcMar-Tc1 651473 651703 136 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX DNA_TcMar-Tc1 257426 257974 215 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LTR_Ngaro 189367 190398 346 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 323785 324345 144 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold38448 WUBlastX LTR_Ngaro 34755 34898 68 - . . scaffold38448 GLEAN mRNA 31492 37691 0.999937 + . ID=CGI_10002779; scaffold1551 WUBlastX LTR_Ngaro 75232 76029 280 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold12 WUBlastX LINE_L2 523896 524423 89 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy-Cigr 26896 27225 167 + . . . . . -1 -1 -1 . . . scaffold1282 WUBlastX DNA_Harbinger 6727 6828 64 - . . . . . -1 -1 -1 . . . scaffold1282 WUBlastX DNA_Harbinger 6786 7199 275 - . . . . . -1 -1 -1 . . . scaffold34224 WUBlastX LTR_Ngaro 11706 11990 66 - . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX DNA_TcMar-Marin 22296 22442 79 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_TcMar-Marin 408053 408400 161 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1-Tx1 162296 162703 43 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_DIRS 710974 711663 320 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 336062 336388 174 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 90989 92110 379 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 89935 90108 47 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 89553 89888 173 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold121 WUBlastX LINE_RTE-X 708879 709013 95 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 709013 709138 51 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 709105 709461 167 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-BovB 40203 40778 144 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold606 WUBlastX LINE_RTE-X 66955 67869 282 - . . scaffold606 GLEAN mRNA 64022 68108 0.70137 - . ID=CGI_10012940; scaffold177 WUBlastX LTR_Pao 385484 385687 21 + . . scaffold177 GLEAN mRNA 385460 386038 0.999998 + . ID=CGI_10016067; scaffold177 WUBlastX LTR_Pao 389129 389731 123 + . . scaffold177 GLEAN mRNA 389629 390416 0.987366 - . ID=CGI_10016068; scaffold492 WUBlastX DNA_Harbinger 81087 81329 65 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-hATw 951324 952010 106 + . . scaffold619 GLEAN mRNA 949722 959476 0.544338 - . ID=CGI_10025794; scaffold963 WUBlastX LTR_DIRS 160337 160846 242 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LTR_DIRS 160837 161130 74 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LTR_DIRS 161163 161312 20 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_Sola 73134 73682 94 + . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX LINE_CR1-L2 42550 42666 49 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 41623 42834 77 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 43314 44081 242 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Harbinger 413254 413697 178 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Harbinger 413816 414070 217 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold1267 WUBlastX LINE_RTE-X 762162 762515 54 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_Sola 48525 48872 123 - . . . . . -1 -1 -1 . . . scaffold36510 WUBlastX LTR_DIRS 28042 28692 97 + . . . . . -1 -1 -1 . . . scaffold36510 WUBlastX LTR_DIRS 28817 30085 197 + . . . . . -1 -1 -1 . . . scaffold38976 WUBlastX LTR_Gypsy 7764 8096 39 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold1091 WUBlastX LTR_Gypsy 283 2514 222 - . . . . . -1 -1 -1 . . . scaffold2 WUBlastX LTR_Pao 74 199 100 - . . . . . -1 -1 -1 . . . scaffold33056 WUBlastX LINE_L1-Tx1 4707 4814 26 - . . . . . -1 -1 -1 . . . scaffold587 WUBlastX LINE_L2 74323 75219 295 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1 58032 58250 54 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy 189847 190584 275 + . . . . . -1 -1 -1 . . . scaffold817 WUBlastX DNA_hAT-Ac 210427 210639 35 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Ngaro 85308 86012 396 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 76826 78193 293 - . . . . . -1 -1 -1 . . . scaffold37722 WUBlastX LINE_L2 43558 43833 181 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX DNA_hAT-hATw 121231 121593 42 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_NOF 393582 393728 107 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold241 WUBlastX DNA_NOF 394008 394316 266 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold241 WUBlastX DNA_NOF 394664 394849 49 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold86 WUBlastX DNA_Maverick 1456332 1456463 112 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_RTE-X 190696 190950 118 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_L1-Tx1 363456 364085 104 + . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX DNA_Harbinger 111108 111959 412 + . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_IS4EU 145600 145986 273 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX DNA_TcMar-Tc1 11949 12971 421 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX DNA_Maverick 299617 300318 439 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 325567 326163 167 - . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_RTE-X 7793 8050 37 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold169 WUBlastX LINE_CR1 999 1247 92 + . . . . . -1 -1 -1 . . . scaffold37430 WUBlastX LTR_Pao 37967 38206 34 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold1743 WUBlastX DNA_TcMar-Marin 2346 2768 169 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_TcMar-Marin 3174 3503 170 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_L1 190301 190933 177 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold406 WUBlastX LINE_L1-Tx1 318510 319070 251 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 320349 320738 108 + . . . . . -1 -1 -1 . . . C30072 WUBlastX LINE_RTE-X 5787 6113 22 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 120934 121296 208 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 121277 121705 269 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_CR1-L2 119708 119995 161 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 567593 567757 40 - . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LINE_RTE-X 53172 54062 145 + . . . . . -1 -1 -1 . . . scaffold35896 WUBlastX LINE_RTE-X 26476 28569 353 - . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1-Tx1 98337 98705 38 - . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1-Tx1 100294 100452 99 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_TcMar-Fot1 142313 142573 186 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_TcMar-Fot1 142564 142857 109 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_TcMar-Fot1 140846 141127 74 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_DIRS 346735 347559 173 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_DIRS 348368 348778 129 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Ngaro 440348 441319 482 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 138118 139476 466 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold709 WUBlastX LTR_Ngaro 216889 217650 448 + . . . . . -1 -1 -1 . . . scaffold858 WUBlastX LINE_CR1-L2 15114 15359 50 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold1328 WUBlastX LTR_Gypsy 64950 66512 257 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 212516 213058 64 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_L1 132169 132258 26 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 102578 102796 52 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 182253 182459 26 + . . . . . -1 -1 -1 . . . scaffold139 WUBlastX RC_Helitron 19911 20084 46 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_L1-Tx1 382938 384443 347 - . . scaffold335 GLEAN mRNA 381520 394130 0.458743 - . ID=CGI_10017105; scaffold1889 WUBlastX LINE_L1-Tx1 549159 549455 48 - . . . . . -1 -1 -1 . . . scaffold1394 WUBlastX LINE_L1 50035 50727 104 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 688423 689343 547 - . . scaffold1750 GLEAN mRNA 688402 691316 0.700377 - . ID=CGI_10021502; scaffold43708 WUBlastX LINE_CR1-L2 236971 237036 23 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold102 WUBlastX LTR_Gypsy 677576 677701 62 + . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 55676 56323 449 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L1-Tx1 126461 126625 47 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L1-Tx1 126607 126879 131 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L1-Tx1 127092 127517 309 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-BovB 104239 104784 564 - . . scaffold1750 GLEAN mRNA 103959 143562 0.754188 + . ID=CGI_10021469; scaffold5 WUBlastX LINE_CR1-L2 12411 12710 92 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Ngaro 74744 75319 279 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold498 WUBlastX LINE_L1-Tx1 325394 326188 533 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LINE_Penelope 116324 117208 540 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 499307 499864 43 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX DNA_TcMar-Tc1 94049 94279 138 - . . scaffold705 GLEAN mRNA 93500 98506 0.711609 + . ID=CGI_10015500; scaffold705 WUBlastX DNA_TcMar-Tc1 94294 94770 241 - . . scaffold705 GLEAN mRNA 93500 98506 0.711609 + . ID=CGI_10015500; scaffold942 WUBlastX LINE_L1 92018 93010 498 - . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_RTE-X 399943 402084 460 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 492518 492715 39 + . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy 50128 51360 94 + . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LTR_Gypsy 73651 74106 90 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_hAT-hATw 655939 657138 25 + . . scaffold77 GLEAN mRNA 654725 664026 0.999581 + . ID=CGI_10027987; scaffold695 WUBlastX LINE_RTE-X 801960 802232 29 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-X 77767 78126 80 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold72 WUBlastX LINE_RTE-BovB 158535 159362 345 - . . scaffold72 GLEAN mRNA 144323 162117 0.999415 + . ID=CGI_10017838; scaffold501 WUBlastX LINE_L1 1294959 1295078 58 - . . . . . -1 -1 -1 . . . scaffold33610 WUBlastX LTR_Gypsy 13996 14055 27 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 121065 121436 220 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1-Tx1 102409 102753 22 + . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_L1-Tx1 81608 83107 491 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_Penelope 494952 496040 480 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1 335786 337525 325 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Maverick 221230 221904 393 - . . scaffold1703 GLEAN mRNA 215396 234951 0.309503 + . ID=CGI_10023049; scaffold601 WUBlastX LTR_DIRS 859721 860167 154 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_IS4EU 9655 10338 353 + . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX DNA_IS4EU 10951 11217 169 + . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold1535 WUBlastX DNA_Maverick 100656 100949 147 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 377082 377945 333 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 588497 588895 122 - . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L1-Tx1 70120 70290 28 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold271 WUBlastX LTR_Pao 944254 944991 215 - . . . . . -1 -1 -1 . . . C34122 WUBlastX LTR_Gypsy 13639 13974 88 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_Maverick 468789 470021 552 + . . . . . -1 -1 -1 . . . scaffold587 WUBlastX LINE_CR1-L2 73255 75051 471 - . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_L1-Tx1 157036 157704 479 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_RTE-X 113190 113471 182 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold43358 WUBlastX LTR_Gypsy 133879 134802 708 + . . scaffold43358 GLEAN mRNA 123775 136005 0.949704 + . ID=CGI_10009976; scaffold1562 WUBlastX LINE_CR1 124666 124902 141 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 127664 128065 265 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX DNA_En-Spm 144701 144841 64 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX DNA_En-Spm 145870 145998 67 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_RTE-X 138512 139183 155 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_Gypsy 160312 161376 736 - . . scaffold1321 GLEAN mRNA 144678 167818 0.544485 + . ID=CGI_10010664; scaffold41014 WUBlastX LINE_L1 28971 30815 125 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_TcMar-Tc1 426700 427710 586 + . . scaffold198 GLEAN mRNA 419796 449287 0.84054 + . ID=CGI_10027808; scaffold501 WUBlastX LINE_L1-Tx1 1292405 1294762 328 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LINE_RTE-BovB 55674 56360 333 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LINE_RTE-BovB 56351 56980 306 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LINE_RTE-X 122287 122631 99 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy-Cigr 76900 77676 479 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LTR_Ngaro 269519 270628 704 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold53 WUBlastX DNA_TcMar-Fot1 1004333 1004989 449 + . . scaffold53 GLEAN mRNA 983465 1007230 0.466135 - . ID=CGI_10026695; scaffold615 WUBlastX LINE_RTE-X 17780 18253 48 - . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L1-Tx1 6291 6653 146 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 297376 297672 164 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 133087 133242 53 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 708202 709278 256 + . . . . . -1 -1 -1 . . . C28702 WUBlastX LTR_Gypsy 4624 5055 345 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 263182 263355 31 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 263385 263849 30 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 263789 264217 131 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 264400 265254 340 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 85726 85869 78 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold43574 WUBlastX LINE_RTE-X 246328 248010 615 + . . scaffold43574 GLEAN mRNA 246020 254223 1 - . ID=CGI_10010884; scaffold35430 WUBlastX LINE_RTE-X 17040 17270 84 + . . . . . -1 -1 -1 . . . scaffold35430 WUBlastX LINE_RTE-X 17267 18271 506 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 87467 88477 637 - . . . . . -1 -1 -1 . . . scaffold33704 WUBlastX LTR_DIRS 9783 10508 579 + . . scaffold33704 GLEAN mRNA 9816 10809 0.999833 + . ID=CGI_10001119; scaffold33704 WUBlastX LTR_DIRS 10507 10806 236 + . . scaffold33704 GLEAN mRNA 9816 10809 0.999833 + . ID=CGI_10001119; scaffold36398 WUBlastX LTR_Gypsy 24046 24207 54 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy-Cigr 267961 268344 64 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_Gypsy-Cigr 104990 106435 828 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 120021 121892 432 + . . . . . -1 -1 -1 . . . scaffold38438 WUBlastX LTR_Pao 5296 5715 190 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX DNA_hAT-Tip100 3483 4955 661 + . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_RTE-X 34351 35241 164 + . . . . . -1 -1 -1 . . . scaffold1498 WUBlastX LINE_L2 90180 91052 450 - . . scaffold1498 GLEAN mRNA 83268 94154 0.999953 + . ID=CGI_10004758; scaffold1498 WUBlastX LINE_L2 91010 91402 169 - . . scaffold1498 GLEAN mRNA 83268 94154 0.999953 + . ID=CGI_10004758; scaffold1498 WUBlastX LINE_L2 91387 91611 139 - . . scaffold1498 GLEAN mRNA 83268 94154 0.999953 + . ID=CGI_10004758; scaffold292 WUBlastX LINE_L1-Tx1 5899 7074 316 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LINE_L1-Tx1 7052 7435 135 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold1546 WUBlastX LTR_Ngaro 153142 154260 858 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Gypsy 249415 250587 207 - . . . . . -1 -1 -1 . . . scaffold1549 WUBlastX LINE_RTE-X 55288 57069 737 - . . . . . -1 -1 -1 . . . scaffold41858 WUBlastX LINE_RTE-X 108923 110920 761 + . . scaffold41858 GLEAN mRNA 107447 123979 1 + . ID=CGI_10005770; scaffold759 WUBlastX LTR_Gypsy 104792 105232 317 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy 70837 71496 563 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold43 WUBlastX LTR_Gypsy 481224 482177 47 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-X 78245 78658 233 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold980 WUBlastX LINE_RTE-X 78621 79466 494 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold41762 WUBlastX LINE_L1-Tx1 86128 87102 537 + . . . . . -1 -1 -1 . . . scaffold41762 WUBlastX LINE_L1-Tx1 87069 88289 142 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1-Tx1 612617 613858 346 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1-Tx1 615068 615766 321 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy-Cigr 87317 87784 216 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_Penelope 202903 203409 24 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_Copia 239794 239850 25 - . . . . . -1 -1 -1 . . . scaffold36936 WUBlastX LTR_Pao 18234 18506 28 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; C31304 WUBlastX LTR_Pao 8099 8497 49 - . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_Merlin 101165 101242 29 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Gypsy 171561 171722 52 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Gypsy 171839 171967 36 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_CR1 398385 398564 37 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold1797 WUBlastX LINE_CR1 32463 32696 43 - . . . . . -1 -1 -1 . . . scaffold43692 WUBlastX LINE_CR1 133524 133583 25 + . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1 49710 50153 58 + . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_CR1-L2 278692 278781 58 - . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_CR1 29596 29694 44 + . . scaffold37472 GLEAN mRNA 1629 29724 0.999786 + . ID=CGI_10002390; scaffold41372 WUBlastX LINE_L2 59138 59299 61 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 33242 33445 29 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 33443 33520 21 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 33697 33801 22 + . . . . . -1 -1 -1 . . . C28620 WUBlastX LTR_Gypsy 5301 5558 85 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Gypsy 82757 83215 66 + . . scaffold221 GLEAN mRNA 82988 83629 0.999661 + . ID=CGI_10008345; scaffold601 WUBlastX LTR_Gypsy 1140538 1140777 52 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_L2 196131 196223 23 + . . . . . -1 -1 -1 . . . scaffold36716 WUBlastX LINE_L2 24242 24580 39 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LTR_Gypsy 431473 432045 64 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 750283 751080 47 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_DIRS 253237 253398 44 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LTR_Ngaro 199268 199366 59 - . . scaffold269 GLEAN mRNA 192453 200699 0.999993 + . ID=CGI_10018996; scaffold184 WUBlastX LTR_Gypsy 256636 256866 77 + . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LTR_Gypsy 6637 6867 28 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 135588 135776 20 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold1374 WUBlastX DNA_Harbinger 33495 33638 68 + . . . . . -1 -1 -1 . . . scaffold1374 WUBlastX DNA_Harbinger 40933 41076 68 - . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX DNA_Harbinger 13845 14012 29 - . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX DNA_Harbinger 14141 14281 23 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX DNA_Harbinger 147032 147193 58 + . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold453 WUBlastX DNA_hAT-Ac 372071 372256 69 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX DNA_hAT-Ac 890739 890921 72 + . . . . . -1 -1 -1 . . . scaffold1056 WUBlastX DNA_hAT-Tip100 21703 21933 44 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_R2-Hero 2450 2851 94 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX DNA_Kolobok-IS4 138293 138439 36 - . . scaffold1769 GLEAN mRNA 137555 138587 0.999507 - . ID=CGI_10009241; scaffold252 WUBlastX DNA_Kolobok-IS4 229776 230075 55 - . . . . . -1 -1 -1 . . . C32614 WUBlastX DNA_TcMar-Marin 1783 1863 39 + . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_TcMar-Marin 704225 704299 28 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_Kolobok 199020 199145 50 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1-Tx1 430527 430859 32 + . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX DNA_Kolobok 32560 32976 57 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_IS4EU 331828 331881 33 - . . . . . -1 -1 -1 . . . C32516 WUBlastX LINE_L1 3328 3510 79 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Ngaro 209472 209723 53 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LTR_Gypsy 58038 58481 32 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX DNA_TcMar-Tc1 189970 190179 72 + . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_Penelope 102819 103259 39 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_I-Nimb 556412 556522 21 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_P 562690 562905 31 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_Penelope 930511 930615 24 - . . . . . -1 -1 -1 . . . scaffold42990 WUBlastX LINE_RTE-X 188578 188760 20 - . . scaffold42990 GLEAN mRNA 185047 195604 0.999676 + . ID=CGI_10008386; C33560 WUBlastX LINE_RTE-RTE 936 1040 42 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 33156 33401 58 - . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_RTE-BovB 95307 95456 21 - . . . . . -1 -1 -1 . . . C31762 WUBlastX LINE_Rex-Babar 2655 2858 93 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_Gypsy 606752 607195 38 - . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LTR_Caulimoviru 102322 102795 26 + . . scaffold41210 GLEAN mRNA 102622 102807 0.732703 + . ID=CGI_10004806; scaffold1020 WUBlastX LINE_RTE-X 35007 35297 35 + . . . . . -1 -1 -1 . . . scaffold1693 WUBlastX LINE_RTE-X 19905 20222 45 - . . . . . -1 -1 -1 . . . scaffold39976 WUBlastX LINE_RTE-BovB 20997 21356 47 + . . . . . -1 -1 -1 . . . scaffold929 WUBlastX LINE_RTE-X 7548 7697 45 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 756697 756897 61 - . . scaffold1009 GLEAN mRNA 749055 758501 1 - . ID=CGI_10028758; scaffold394 WUBlastX LINE_RTE-X 467258 467362 48 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 297592 297675 21 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 51144 51242 31 - . . . . . -1 -1 -1 . . . C28676 WUBlastX LTR_Ngaro 795 917 47 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_RTE-X 721117 721431 41 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX DNA_TcMar-Tc2 354500 354649 34 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX DNA_Sola 608411 608824 36 - . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_L1-Tx1 175220 175516 61 - . . scaffold421 GLEAN mRNA 170277 178992 0.999676 + . ID=CGI_10012155; scaffold472 WUBlastX LINE_L1-Tx1 474932 475165 21 + . . . . . -1 -1 -1 . . . scaffold652 WUBlastX LINE_L1-Tx1 2118 2288 71 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Tc1 465008 465139 59 - . . . . . -1 -1 -1 . . . scaffold1235 WUBlastX LINE_L2 160720 161097 29 - . . scaffold1235 GLEAN mRNA 159432 170109 0.960098 - . ID=CGI_10011836; scaffold1286 WUBlastX LINE_CR1 4442 4600 37 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold260 WUBlastX LINE_L2 62732 62884 76 + . . scaffold260 GLEAN mRNA 48314 65715 0.848653 - . ID=CGI_10003729; scaffold315 WUBlastX LINE_L2 398788 398910 36 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Pao 51225 51422 103 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Pao 790174 790614 53 + . . scaffold3 GLEAN mRNA 786230 790722 0.588946 + . ID=CGI_10027302; scaffold1854 WUBlastX LINE_L1 2470 2565 21 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1080272 1080607 39 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold1583 WUBlastX LTR_Gypsy-Cigr 821745 822182 66 - . . . . . -1 -1 -1 . . . scaffold37856 WUBlastX LTR_Gypsy-Cigr 27340 27543 45 + . . scaffold37856 GLEAN mRNA 23108 48588 0.537786 + . ID=CGI_10002519; scaffold364 WUBlastX LTR_Gypsy 202674 203498 34 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_DIRS 146971 147213 37 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Ngaro 205840 206010 94 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 520909 521430 67 + . . scaffold3 GLEAN mRNA 521350 521580 0.999999 + . ID=CGI_10027294; scaffold36778 WUBlastX LTR_Gypsy 33413 34048 61 + . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LTR_Gypsy 542209 542634 54 - . . scaffold563 GLEAN mRNA 541984 542307 0.999955 - . ID=CGI_10019845; scaffold563 WUBlastX LTR_Gypsy 542209 542634 54 - . . scaffold563 GLEAN mRNA 542480 589820 0.135238 + . ID=CGI_10019846; scaffold601 WUBlastX DNA_IS4EU 509098 509211 29 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_IS4EU 509213 509395 75 + . . . . . -1 -1 -1 . . . scaffold41346 WUBlastX RC_Helitron 33266 33763 75 - . . scaffold41346 GLEAN mRNA 32052 37243 0.990251 - . ID=CGI_10004999; scaffold43538 WUBlastX LINE_R2-Hero 70259 70378 40 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX RC_Helitron 313231 313344 26 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_Harbinger 618712 618891 51 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX DNA_Harbinger 224001 224240 54 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_Harbinger 23731 23910 51 - . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LTR_Gypsy 549223 549429 91 - . . . . . -1 -1 -1 . . . scaffold39050 WUBlastX LTR_Gypsy 38948 39154 91 - . . . . . -1 -1 -1 . . . scaffold1026 WUBlastX LINE_Penelope 60466 60639 71 - . . . . . -1 -1 -1 . . . C8775 WUBlastX LINE_Penelope 2 142 76 + . . . . . -1 -1 -1 . . . scaffold1726 WUBlastX LINE_Penelope 234235 234414 65 + . . . . . -1 -1 -1 . . . scaffold444 WUBlastX DNA_TcMar-Marin 411661 411882 73 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LTR_Ngaro 197242 197319 26 + . . scaffold1729 GLEAN mRNA 196724 202355 0.822484 + . ID=CGI_10008492; scaffold193 WUBlastX LINE_L2 418005 418157 69 - . . scaffold193 GLEAN mRNA 416048 422414 0.990769 - . ID=CGI_10015248; scaffold105 WUBlastX DNA_TcMar-Marin 264470 264919 86 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_L1 402678 403574 55 + . . scaffold1772 GLEAN mRNA 402462 402860 1 + . ID=CGI_10014821; scaffold1882 WUBlastX LINE_L1 70212 70238 25 - . . . . . -1 -1 -1 . . . scaffold38596 WUBlastX LINE_L1-Tx1 47403 48116 26 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_L1 219255 219680 45 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok-Hyd 394288 394572 25 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold42466 WUBlastX LINE_RTE-X 114642 115049 23 + . . scaffold42466 GLEAN mRNA 111968 131665 0.500645 + . ID=CGI_10006942; scaffold759 WUBlastX LINE_RTE-X 81171 81341 90 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-BovB 106794 106916 28 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Maverick 57303 57542 53 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_PiggyBac 357528 357620 37 + . . scaffold453 GLEAN mRNA 346906 361240 0.116749 + . ID=CGI_10015050; scaffold625 WUBlastX LINE_RTE-BovB 164600 164731 52 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_RTE-X 268984 269160 84 - . . scaffold507 GLEAN mRNA 254357 273838 0.999949 - . ID=CGI_10019093; scaffold99 WUBlastX DNA_Sola 295165 295380 48 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_Sola 295530 295616 43 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_Gypsy 218575 218991 71 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold44 WUBlastX LINE_L1-Tx1 215941 216195 25 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 373517 373771 25 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L1-Tx1 384436 384690 25 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 236058 236471 35 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX DNA_Chapaev 872900 873175 51 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX DNA_hAT-Tip100 28577 28897 75 + . . scaffold1160 GLEAN mRNA 28577 28954 0.995277 + . ID=CGI_10015340; scaffold34942 WUBlastX DNA_hAT-Tip100 14840 15160 75 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold1009 WUBlastX DNA_TcMar-Fot1 1790600 1790905 72 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_CR1-L2 283894 283983 51 + . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LINE_CR1 64873 65253 57 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 706680 706760 47 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 61194 61799 65 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LTR_Gypsy 46813 47253 97 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 994140 994172 22 - . . . . . -1 -1 -1 . . . C31096 WUBlastX LTR_DIRS 5468 5737 29 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold42840 WUBlastX DNA_Crypton 120166 120570 88 - . . scaffold42840 GLEAN mRNA 99061 121834 0.994857 - . ID=CGI_10007835; scaffold1018 WUBlastX DNA_Crypton 387259 387768 71 + . . . . . -1 -1 -1 . . . scaffold1508 WUBlastX LINE_L2 173877 174170 37 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy 104843 104971 71 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 1023842 1023967 42 - . . scaffold425 GLEAN mRNA 997658 1029515 0.993112 - . ID=CGI_10026011; scaffold1532 WUBlastX DNA_Harbinger 657802 657909 101 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Harbinger 391360 391389 23 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_Harbinger 681127 681345 59 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold743 WUBlastX DNA_Harbinger 210546 210758 81 - . . scaffold743 GLEAN mRNA 190625 210773 0.715666 - . ID=CGI_10008616; scaffold583 WUBlastX DNA_Harbinger 312375 312602 87 - . . . . . -1 -1 -1 . . . scaffold445 WUBlastX DNA_hAT-Tip100 470454 471065 59 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_Jockey 416726 417058 96 + . . . . . -1 -1 -1 . . . scaffold487 WUBlastX DNA_TcMar-Tc2 5867 6388 82 + . . . . . -1 -1 -1 . . . scaffold1492 WUBlastX LINE_L1 84419 84664 54 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1 171429 172001 77 - . . scaffold321 GLEAN mRNA 170991 171881 0.996199 - . ID=CGI_10020800; scaffold733 WUBlastX LTR_ERV1 31895 32080 34 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L2 129125 129400 67 + . . . . . -1 -1 -1 . . . scaffold35286 WUBlastX LINE_R1 5546 5614 24 + . . . . . -1 -1 -1 . . . scaffold41730 WUBlastX DNA_TcMar-Marin 63901 64140 39 + . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_RTE-BovB 193525 193890 90 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_RTE-X 173303 173629 30 - . . scaffold445 GLEAN mRNA 165031 179035 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX LINE_RTE-X 173303 173629 30 - . . scaffold445 GLEAN mRNA 157494 175078 0.500104 + . ID=CGI_10019431; scaffold471 WUBlastX LINE_RTE-X 119997 120155 76 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 495681 495842 33 + . . scaffold107 GLEAN mRNA 482349 496880 0.436429 + . ID=CGI_10025056; scaffold42268 WUBlastX LINE_RTE-X 72354 72563 49 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LTR_DIRS 749938 750084 72 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LTR_DIRS 106207 106542 36 + . . . . . -1 -1 -1 . . . C28272 WUBlastX DNA_Sola 1563 1721 44 - . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX LINE_L1-Tx1 9836 9970 23 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_hAT-Tip100 193015 193380 36 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; scaffold433 WUBlastX LINE_CR1-L2 125338 125487 40 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L2 134839 134955 116 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L2 212529 213188 53 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_hAT-Tip100 202505 202834 80 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX DNA_hAT-Tip100 159520 159849 90 + . . scaffold1518 GLEAN mRNA 153424 166490 0.996783 + . ID=CGI_10017796; scaffold280 WUBlastX LINE_L2 631712 632044 40 + . . . . . -1 -1 -1 . . . C28626 WUBlastX LINE_L2 1064 1762 62 + . . . . . -1 -1 -1 . . . C26370 WUBlastX LINE_L2 1833 2339 55 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LTR_DIRS 388457 388867 44 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 870883 871182 83 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LTR_Gypsy 172670 172912 110 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy-Cigr 116806 117036 68 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_hAT-Blackja 436478 436609 50 + . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX DNA_hAT-Tip100 95706 95945 39 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX DNA_hAT-Ac 250503 250796 34 - . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_IS4EU 26381 26596 31 + . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_IS4EU 26722 27012 35 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_Kolobok-IS4 93778 94080 52 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_IS4EU 108050 108427 70 + . . scaffold99 GLEAN mRNA 106780 117604 0.544851 - . ID=CGI_10021191; scaffold588 WUBlastX LTR_Gypsy 414310 415284 57 + . . scaffold588 GLEAN mRNA 413724 423614 0.849231 + . ID=CGI_10016228; scaffold38978 WUBlastX LTR_Gypsy 62493 62519 24 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy 283939 284277 109 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 131593 131973 98 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Marin 185707 185778 24 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX DNA_TcMar-Tc2 302733 303074 97 + . . . . . -1 -1 -1 . . . scaffold1173 WUBlastX DNA_TcMar-m44 69445 69603 78 + . . scaffold1173 GLEAN mRNA 66584 69723 1 + . ID=CGI_10005745; scaffold252 WUBlastX LINE_L2 252546 252623 21 - . . . . . -1 -1 -1 . . . scaffold38498 WUBlastX LTR_Ngaro 20612 20857 68 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Ngaro 111398 111559 58 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_Penelope 55877 56065 38 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_MuDR 1071869 1072093 86 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_MuDR 579445 579690 48 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold1377 WUBlastX LINE_L1 172764 173000 30 + . . scaffold1377 GLEAN mRNA 172994 173758 0.999572 + . ID=CGI_10008622; scaffold1377 WUBlastX LINE_L1 172991 173335 80 + . . scaffold1377 GLEAN mRNA 172994 173758 0.999572 + . ID=CGI_10008622; scaffold1035 WUBlastX LINE_L1 12145 12474 53 - . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LINE_L1-Tx1 146412 146585 25 - . . . . . -1 -1 -1 . . . C25038 WUBlastX LINE_Penelope 1761 1943 61 + . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_RTE-X 135591 135695 45 - . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_RTE-X 19829 20023 60 - . . . . . -1 -1 -1 . . . scaffold33806 WUBlastX LINE_RTE-X 1899 2375 73 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_RTE-X 157835 158080 73 + . . scaffold1402 GLEAN mRNA 154950 158880 0.996561 - . ID=CGI_10017580; scaffold1017 WUBlastX LINE_RTE-X 87446 87655 56 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_RTE-X 408733 409029 48 - . . scaffold443 GLEAN mRNA 402348 431121 0.212109 - . ID=CGI_10022775; scaffold433 WUBlastX LINE_RTE-X 559091 559276 72 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_RTE-X 208476 208661 72 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 67917 68372 21 - . . scaffold1132 GLEAN mRNA 47693 94911 0.303068 - . ID=CGI_10023311; scaffold474 WUBlastX DNA_PiggyBac 94910 95149 47 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX DNA_Maverick 106725 106877 88 - . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold31880 WUBlastX LINE_RTE-X 9909 10097 102 - . . . . . -1 -1 -1 . . . scaffold707 WUBlastX DNA_Sola 37267 37560 96 + . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; C24900 WUBlastX DNA_Sola 1852 2046 75 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_L1-Tx1 391820 392485 35 + . . scaffold145 GLEAN mRNA 380231 413214 0.61414 + . ID=CGI_10026556; scaffold1359 WUBlastX LINE_CR1 182122 182271 20 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX DNA_TcMar-Marin 73732 74475 36 - . . scaffold352 GLEAN mRNA 55040 89183 0.972718 + . ID=CGI_10012244; scaffold1523 WUBlastX LTR_Copia 2269 3372 123 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Copia 556338 556538 36 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold1665 WUBlastX LINE_CR1-L2 415411 415866 62 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold1014 WUBlastX LINE_L2 593595 594122 82 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold1726 WUBlastX LINE_L2 361903 362127 79 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Gypsy 134178 134825 93 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Ngaro 475388 475594 48 + . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LTR_DIRS 66055 66255 92 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L2 8215 8505 71 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LTR_Ngaro 697593 697874 48 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Harbinger 14354 14731 25 - . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_IS4EU 31496 31903 32 + . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_IS4EU 32019 32210 58 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX DNA_hAT-Tip100 269703 271088 58 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_CR1 277457 277549 20 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_Penelope 320222 320542 73 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1 14263 14691 107 - . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LINE_RTE-X 12197 12466 92 + . . . . . -1 -1 -1 . . . scaffold39976 WUBlastX LINE_RTE-BovB 21024 21275 73 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LINE_RTE-X 41569 41811 28 + . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 30870 31043 48 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_RTE-X 852675 852899 66 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 94620 94907 104 + . . . . . -1 -1 -1 . . . scaffold39986 WUBlastX LINE_RTE-X 67661 68011 89 - . . . . . -1 -1 -1 . . . scaffold42264 WUBlastX LINE_RTE-X 117176 117478 34 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_RTE-X 151884 152075 99 + . . . . . -1 -1 -1 . . . scaffold38750 WUBlastX LINE_RTE-X 5763 6011 87 - . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold1771 WUBlastX LINE_RTE-X 64999 65178 115 - . . . . . -1 -1 -1 . . . scaffold39464 WUBlastX DNA_Sola 37825 38031 101 + . . scaffold39464 GLEAN mRNA 33607 57080 0.275021 - . ID=CGI_10003387; scaffold87 WUBlastX LINE_RTE-X 47170 47418 122 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 569779 569832 23 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 978260 978361 21 - . . . . . -1 -1 -1 . . . C27092 WUBlastX LINE_L2 1788 2258 78 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 373579 373878 73 - . . . . . -1 -1 -1 . . . scaffold43452 WUBlastX LINE_CR1-L2 153303 153638 92 + . . . . . -1 -1 -1 . . . C28544 WUBlastX LTR_Copia 3698 4687 85 - . . . . . -1 -1 -1 . . . scaffold35104 WUBlastX LTR_Pao 15950 16441 113 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Ngaro 220760 220870 73 - . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_Ngaro 53202 53771 41 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_DRE 305417 305911 21 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Gypsy 85973 86116 59 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 312137 312289 33 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_ERVL 10230 10313 22 + . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LTR_Gypsy 141713 142735 110 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_IS4EU 112112 112276 39 + . . scaffold750 GLEAN mRNA 95673 121067 0.651358 - . ID=CGI_10022212; scaffold750 WUBlastX DNA_IS4EU 112284 112466 65 + . . scaffold750 GLEAN mRNA 95673 121067 0.651358 - . ID=CGI_10022212; scaffold1796 WUBlastX DNA_IS4EU 10170 10616 71 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_I 440778 440891 26 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX DNA_Kolobok-IS4 44622 44783 53 - . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold541 WUBlastX LTR_Gypsy 16698 17294 109 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_TcMar-Pogo 259188 259511 80 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX DNA_MuDR 43518 45074 31 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_MuDR 1229012 1230214 29 - . . scaffold471 GLEAN mRNA 1226022 1238861 0.423333 - . ID=CGI_10027038; scaffold39858 WUBlastX DNA_Kolobok 9759 9908 77 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_IS4EU 182107 182160 24 + . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LTR_Gypsy 72684 73004 91 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-X 1138262 1138495 34 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold419 WUBlastX DNA_PiggyBac 39605 39943 113 + . . scaffold419 GLEAN mRNA 39110 43712 0.992133 + . ID=CGI_10028318; scaffold128 WUBlastX DNA_PiggyBac 227895 228221 63 + . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LTR_Ngaro 41073 41327 56 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1 738720 738788 38 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold1024 WUBlastX DNA_PiggyBac 1055690 1055926 70 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_CR1 173011 173205 25 + . . . . . -1 -1 -1 . . . C34310 WUBlastX LINE_CR1-L2 12734 13129 65 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LINE_L2 354625 354978 49 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L2 130459 130857 117 + . . scaffold348 GLEAN mRNA 129346 131334 0.749493 + . ID=CGI_10022971; scaffold541 WUBlastX LTR_Gypsy 62362 62619 128 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold40054 WUBlastX LTR_Ngaro 77604 77957 58 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Ngaro 190576 190746 50 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LTR_DIRS 303938 304114 29 + . . . . . -1 -1 -1 . . . scaffold1600 WUBlastX LTR_DIRS 185827 185988 56 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 185827 185988 56 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold31032 WUBlastX DNA_Harbinger 8089 8226 76 + . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX DNA_Harbinger 294602 294868 132 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX DNA_TcMar-Tc1 288083 288592 96 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_Penelope 498344 498757 76 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_L1 158606 158734 53 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_MuDR 1329451 1329714 41 - . . scaffold198 GLEAN mRNA 1312239 1337375 0.960179 - . ID=CGI_10027863; scaffold177 WUBlastX LINE_Penelope 118877 119272 86 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_TcMar-Tc1 10887 10997 30 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold1583 WUBlastX LINE_RTE-BovB 507840 508130 79 - . . . . . -1 -1 -1 . . . C27444 WUBlastX LINE_RTE-RTE 3333 3434 24 - . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX LINE_RTE-BovB 25772 25855 21 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-X 559197 559283 23 + . . . . . -1 -1 -1 . . . scaffold38756 WUBlastX DNA_hAT-Tip100 20936 21145 139 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_RTE-X 297290 297538 84 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX DNA_TcMar-Tc1 569615 569836 92 + . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX LINE_L1-Tx1 112815 113042 103 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_L1-Tx1 320839 321234 72 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Zator 257359 257544 114 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Zator 257751 257792 29 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_CR1 359846 360196 95 + . . scaffold983 GLEAN mRNA 353704 360265 0.995128 + . ID=CGI_10014035; scaffold847 WUBlastX LINE_CR1 174276 174614 27 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 56351 56749 35 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 56096 56224 35 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Ngaro 75869 76231 116 - . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy 41216 41923 128 - . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy 50909 51616 128 + . . scaffold39096 GLEAN mRNA 50582 58209 0.813277 + . ID=CGI_10003149; scaffold1554 WUBlastX LTR_Gypsy 499305 499955 106 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 308228 308740 119 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 170172 170225 25 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1512 WUBlastX DNA_Kolobok-IS4 68828 69019 28 + . . . . . -1 -1 -1 . . . scaffold1173 WUBlastX LTR_ERVK 112355 112498 25 - . . . . . -1 -1 -1 . . . scaffold1088 WUBlastX LINE_R2-Hero 37106 37702 134 + . . scaffold1088 GLEAN mRNA 30301 38437 0.893641 - . ID=CGI_10003651; scaffold1789 WUBlastX DNA_TcMar-Tc1 26218 26283 56 - . . scaffold1789 GLEAN mRNA 24055 30627 0.651132 - . ID=CGI_10003176; C24640 WUBlastX LINE_Penelope 442 687 82 - . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX LINE_L1 197480 197842 113 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_L1 406261 406500 38 + . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_RTE-X 57061 57381 117 + . . . . . -1 -1 -1 . . . scaffold452 WUBlastX LINE_RTE-X 10804 10929 56 + . . . . . -1 -1 -1 . . . scaffold452 WUBlastX LINE_RTE-X 11817 11924 23 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_RTE-X 366854 367036 98 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_PiggyBac 1262933 1263718 93 - . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold32160 WUBlastX LTR_Pao 450 821 20 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Gypsy 50203 50820 124 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 293491 293694 34 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold1423 WUBlastX LTR_Ngaro 690603 690860 65 + . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX LTR_Ngaro 40058 40429 92 - . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LINE_L2 87857 88276 113 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Ngaro 486207 486317 48 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold223 WUBlastX LTR_Gypsy 6667 7182 33 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 7286 7570 123 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold40208 WUBlastX RC_Helitron 35512 35775 35 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold1077 WUBlastX DNA_Harbinger 500148 500357 55 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX DNA_IS4EU 9257 9379 36 + . . scaffold672 GLEAN mRNA 1455 17003 0.927273 - . ID=CGI_10021021; scaffold43836 WUBlastX DNA_Harbinger 35712 35822 40 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 97998 98387 153 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold194 WUBlastX LINE_L1 78721 79947 43 + . . . . . -1 -1 -1 . . . scaffold1056 WUBlastX LINE_L1-Tx1 248868 249242 109 + . . . . . -1 -1 -1 . . . scaffold43396 WUBlastX LINE_Penelope 186734 186841 44 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold32282 WUBlastX DNA_TcMar-Pogo 3852 4325 64 + . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Maverick 4150 4425 101 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_Proto2 158302 158520 42 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_RTE-X 174948 175184 24 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 314550 315197 69 + . . scaffold709 GLEAN mRNA 310064 322384 0.999026 + . ID=CGI_10020089; scaffold41858 WUBlastX DNA_TcMar-Tc1 90875 91222 119 + . . scaffold41858 GLEAN mRNA 78438 94955 0.999356 - . ID=CGI_10005768; scaffold145 WUBlastX DNA_PiggyBac 811668 811958 101 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 435017 435346 100 - . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LINE_L1-Tx1 291088 291561 39 + . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX DNA_TcMar-Tc1 218780 219598 89 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy-Cigr 16668 17330 125 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 1009923 1010312 26 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Ngaro 402756 403205 131 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LTR_Gypsy 20979 21215 57 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy 240492 240887 102 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold487 WUBlastX LTR_Gypsy 384536 384757 97 + . . . . . -1 -1 -1 . . . scaffold194 WUBlastX RC_Helitron 273120 273767 155 - . . scaffold194 GLEAN mRNA 271235 277293 0.464633 - . ID=CGI_10011069; scaffold194 WUBlastX RC_Helitron 273120 273767 155 - . . scaffold194 GLEAN mRNA 249396 274108 0.709931 + . ID=CGI_10011068; scaffold446 WUBlastX DNA_Kolobok 187467 187586 59 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_Kolobok 512028 512270 133 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 169820 170041 47 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_RTE-X 614438 615319 99 - . . scaffold492 GLEAN mRNA 614231 614530 0.489668 - . ID=CGI_10024849; scaffold410 WUBlastX LINE_RTE-X 56262 56690 44 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX DNA_Sola 208701 208838 63 - . . scaffold43552 GLEAN mRNA 203091 219517 0.574406 + . ID=CGI_10011022; scaffold43552 WUBlastX DNA_Sola 208701 208838 63 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold168 WUBlastX DNA_TcMar-Tc1 1061885 1062061 26 + . . scaffold168 GLEAN mRNA 1061165 1068516 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1061885 1062061 26 + . . scaffold168 GLEAN mRNA 1061468 1075146 0.901342 - . ID=CGI_10025627; scaffold1635 WUBlastX DNA_TcMar-Tc1 29133 29729 124 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_TcMar-Tc1 435099 435179 26 - . . scaffold286 GLEAN mRNA 423114 437338 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 435099 435179 26 - . . scaffold286 GLEAN mRNA 433158 447481 0.525246 + . ID=CGI_10015974; scaffold39142 WUBlastX LTR_DIRS 64776 65426 313 - . . . . . -1 -1 -1 . . . scaffold39142 WUBlastX LTR_DIRS 65441 66391 600 - . . . . . -1 -1 -1 . . . scaffold41902 WUBlastX LTR_Ngaro 74642 76006 991 - . . . . . -1 -1 -1 . . . scaffold34438 WUBlastX RC_Helitron 10463 12034 385 - . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX DNA_hAT 166709 167257 161 + . . scaffold44098 GLEAN mRNA 163319 167512 1 + . ID=CGI_10017705; scaffold37816 WUBlastX LTR_Ngaro 32030 32383 36 + . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LTR_Gypsy 176459 176743 147 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1041753 1042199 74 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_hAT-Ac 87353 88132 120 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX DNA_hAT-Tip100 431724 432554 114 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_IS4EU 569432 569608 75 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_IS4EU 118366 118599 73 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_Penelope 62117 62473 129 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok 376002 376181 28 + . . scaffold406 GLEAN mRNA 374338 376248 0.990609 + . ID=CGI_10023846; scaffold406 WUBlastX DNA_Kolobok 376388 376516 81 + . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_L1 112010 112615 118 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_L1 671256 671675 139 + . . . . . -1 -1 -1 . . . scaffold32024 WUBlastX LINE_L1 8370 9140 130 - . . . . . -1 -1 -1 . . . scaffold452 WUBlastX LINE_RTE-X 11817 12014 20 + . . . . . -1 -1 -1 . . . scaffold1200 WUBlastX LINE_RTE-X 35884 36012 20 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LINE_RTE-X 244695 244766 33 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1 WUBlastX DNA_TcMar-Tc1 103858 104169 88 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 1690603 1690821 53 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 605241 605396 53 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 605687 605917 141 + . . . . . -1 -1 -1 . . . scaffold331 WUBlastX LINE_L1-Tx1 23926 24462 142 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 578835 579032 40 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_RTE-X 271612 271782 68 + . . . . . -1 -1 -1 . . . scaffold278 WUBlastX LTR_Gypsy 32961 34097 1092 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 33844 34818 169 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L2 214381 215103 97 - . . . . . -1 -1 -1 . . . scaffold37134 WUBlastX LINE_L2 850 1572 82 - . . . . . -1 -1 -1 . . . scaffold36816 WUBlastX LINE_L2 7158 7694 137 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_CR1-L2 222679 223482 95 - . . scaffold43726 GLEAN mRNA 221786 248971 0.998252 + . ID=CGI_10012027; scaffold43842 WUBlastX LINE_CR1 219427 219549 30 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold1546 WUBlastX LTR_Ngaro 154307 155074 94 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Ngaro 303877 304749 75 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold1532 WUBlastX LTR_Ngaro 641360 641776 89 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold22 WUBlastX DNA_Crypton 1857197 1857511 28 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_Crypton 1857656 1857823 22 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_Crypton 1857997 1858287 110 + . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 101382 102053 115 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Harbinger 468937 469023 40 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 146002 146439 84 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold705 WUBlastX LINE_Penelope 59855 60289 120 + . . scaffold705 GLEAN mRNA 54891 78972 0.408277 - . ID=CGI_10015497; scaffold317 WUBlastX LTR_Ngaro 351178 351741 98 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 603051 603278 75 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Marin 476003 476374 53 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Marin 476413 476784 98 - . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_RTE-X 2609 3058 126 + . . scaffold42840 GLEAN mRNA 78 8126 0.998904 + . ID=CGI_10007830; scaffold1179 WUBlastX LINE_RTE-X 84454 84960 103 + . . scaffold1179 GLEAN mRNA 79874 93183 1 + . ID=CGI_10027341; scaffold40786 WUBlastX LINE_RTE-X 20156 20578 115 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LINE_L1-Tx1 58613 59302 86 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 100819 101298 100 - . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_L1-Tx1 142068 142883 66 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_TcMar-Tc1 233511 233654 29 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_Pao 88880 89806 908 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_Sola 213358 215217 845 + . . scaffold664 GLEAN mRNA 213415 231457 0.897817 + . ID=CGI_10021440; scaffold1103 WUBlastX LINE_L2 12970 13848 448 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold40982 WUBlastX LTR_DIRS 85618 85791 110 + . . . . . -1 -1 -1 . . . C31300 WUBlastX LTR_Gypsy-Cigr 7729 8163 270 - . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_CR1 89494 89970 56 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L2 321505 321684 54 + . . scaffold204 GLEAN mRNA 318709 324303 0.610548 - . ID=CGI_10026103; scaffold1061 WUBlastX LINE_CR1-L2 379824 380402 64 + . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 25605 25685 20 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Ngaro 759136 759258 53 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Ngaro 759270 759575 80 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 227334 228053 93 + . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_Kolobok 18615 18878 41 - . . scaffold1782 GLEAN mRNA 7792 19893 0.99249 - . ID=CGI_10004240; scaffold42840 WUBlastX LINE_RTE-X 2606 3184 103 + . . scaffold42840 GLEAN mRNA 78 8126 0.998904 + . ID=CGI_10007830; scaffold951 WUBlastX LINE_RTE-X 166576 166824 104 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 1137631 1138191 85 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold36624 WUBlastX LINE_RTE-X 35008 35310 111 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 191490 191666 34 + . . scaffold149 GLEAN mRNA 179199 193397 0.990232 - . ID=CGI_10025295; scaffold142 WUBlastX LTR_Gypsy 1224296 1225336 345 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1226300 1226803 457 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Gypsy 306743 306958 37 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 499807 500265 72 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 86584 88014 1228 + . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_RTE-X 39414 42548 869 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX RC_Helitron 36715 39180 588 - . . . . . -1 -1 -1 . . . scaffold1052 WUBlastX LTR_DIRS 35731 37764 1220 - . . scaffold1052 GLEAN mRNA 1917 38966 0.980203 - . ID=CGI_10005467; scaffold514 WUBlastX LTR_Pao 2792 3127 153 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L2 611384 611809 83 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_DIRS 262718 263443 179 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_DIRS 254425 254529 35 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX DNA_IS4EU 102962 103123 43 - . . . . . -1 -1 -1 . . . C35716 WUBlastX DNA_IS4EU 15296 15640 163 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_TcMar-Pogo 30549 31070 165 + . . . . . -1 -1 -1 . . . scaffold39352 WUBlastX LINE_LOA 57735 57983 31 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_L1-Tx1 190368 190514 138 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_L1-Tx1 190549 190638 51 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_RTE-RTE 158848 159051 79 + . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_L1-Tx1 499469 499813 70 + . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_L1-Tx1 205873 206334 123 - . . scaffold1869 GLEAN mRNA 201078 208517 1 - . ID=CGI_10009025; scaffold1817 WUBlastX LINE_L1-Tx1 17588 17683 27 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold1041 WUBlastX LINE_L1-Tx1 21385 21801 79 + . . . . . -1 -1 -1 . . . scaffold37730 WUBlastX LINE_L1-Tx1 43382 43744 152 - . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_L1-Tx1 182768 184381 707 - . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LTR_Gypsy-Troyk 100357 100791 158 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 104175 104639 292 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold101 WUBlastX LINE_L2 615198 615506 157 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Pao 11331 11435 24 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Ngaro 73099 73275 73 + . . scaffold412 GLEAN mRNA 49163 134272 0.261275 - . ID=CGI_10018559; scaffold501 WUBlastX LINE_Tad1? 583477 583527 21 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_Harbinger 681387 681512 61 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold1475 WUBlastX LINE_L1-Tx1 87117 87221 28 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LINE_L1 61206 61319 46 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold576 WUBlastX LINE_RTE-X 455597 456388 37 + . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-X 291555 292706 55 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_Sola 60826 61056 56 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX LTR_Ngaro 154508 155272 140 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_TcMar-Tc1 92905 93510 116 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_L1-Tx1 280382 280612 23 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_L1-Tx1 484384 484776 161 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 610369 611400 563 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 611447 612757 613 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 267026 268036 546 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 268903 269367 74 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_hAT-Tip100 35093 35881 478 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_hAT-Tip100 35859 37136 840 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy-Cigr 27560 28876 428 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 35060 36562 954 + . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LTR_Pao 271733 273238 892 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 273374 273628 84 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 273706 274350 479 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 274749 274979 35 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold343 WUBlastX LINE_R2-Hero 372043 372096 22 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-X 155461 155973 112 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-X 155994 156650 408 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-X 156632 158167 763 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LTR_Pao 53928 54026 24 + . . . . . -1 -1 -1 . . . scaffold40894 WUBlastX LINE_CR1-L2 102694 103221 121 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_CR1 298304 299464 105 - . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LTR_Gypsy 120539 121060 189 + . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LTR_Gypsy 26976 27497 191 - . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LTR_Gypsy 285130 285651 189 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 567949 568053 26 - . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX LTR_Gypsy 36324 36860 225 + . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold189 WUBlastX LINE_L1 404580 404927 66 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 51778 51945 29 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 205773 206186 178 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold337 WUBlastX LINE_RTE-X 1189411 1190403 50 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-BovB 39710 40093 50 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold1155 WUBlastX LINE_RTE-BovB 101222 101566 53 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_RTE-X 229449 229907 91 - . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LINE_RTE-X 5497 5589 22 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-X 834064 834705 47 + . . scaffold601 GLEAN mRNA 814190 834629 0.512568 + . ID=CGI_10026849; scaffold601 WUBlastX LINE_RTE-X 834807 835334 40 + . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LTR_Gypsy 172113 172202 45 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LTR_Gypsy 172645 172905 74 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 327390 328637 689 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 329001 329732 483 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy-Cigr 200276 200611 143 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L1-Tx1 185233 185604 96 - . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold508 WUBlastX LINE_CR1 215498 215959 183 - . . . . . -1 -1 -1 . . . scaffold27 WUBlastX LTR_Gypsy-Cigr 57333 57866 171 + . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LTR_DIRS 147728 148471 174 + . . scaffold1084 GLEAN mRNA 143113 160475 0.702333 + . ID=CGI_10010078; scaffold474 WUBlastX RC_Helitron 104456 104572 26 - . . . . . -1 -1 -1 . . . scaffold40512 WUBlastX DNA_IS4EU 52153 52719 189 + . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold1132 WUBlastX LINE_L1-Tx1 79529 80005 205 + . . scaffold1132 GLEAN mRNA 47693 94911 0.303068 - . ID=CGI_10023311; scaffold178 WUBlastX LINE_Penelope 103716 104120 65 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold664 WUBlastX DNA_PiggyBac 352263 352994 56 + . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_RTE-X 127562 127732 98 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_RTE-X 334222 334659 201 - . . scaffold1860 GLEAN mRNA 329243 343922 0.916009 + . ID=CGI_10013950; scaffold499 WUBlastX LINE_L1-Tx1 71855 73297 922 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_L1-Tx1 73243 74844 321 + . . . . . -1 -1 -1 . . . scaffold1394 WUBlastX LINE_L1-Tx1 47948 49318 902 + . . . . . -1 -1 -1 . . . scaffold1394 WUBlastX LINE_L1-Tx1 50209 51846 405 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 374403 378104 1145 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX RC_Helitron 406039 407124 161 - . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Pao 31632 31751 23 + . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Pao 32435 32683 82 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_L1 59963 60613 181 + . . . . . -1 -1 -1 . . . C22400 WUBlastX LINE_L2 1533 1751 28 - . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX LINE_CR1-L2 153832 154470 112 - . . scaffold1734 GLEAN mRNA 152020 160994 0.46186 + . ID=CGI_10010541; scaffold1836 WUBlastX LINE_CR1 150598 150705 66 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L1 639417 639476 23 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_MuDR 95309 95929 195 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_RTE-X 97561 97611 20 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 152672 153130 93 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_Maverick 320798 321076 59 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_TcMar-Tc1 756966 757058 20 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 26926 27726 99 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_CR1-L2 25105 25692 203 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_CR1 482773 483162 42 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold43920 WUBlastX LTR_Gypsy 270055 270486 233 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_hAT-hATw 266491 266592 71 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_hAT-hATw 266615 266785 84 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_hAT-hATw 266865 267125 85 - . . . . . -1 -1 -1 . . . C28884 WUBlastX LTR_Gypsy 3 374 236 - . . . . . -1 -1 -1 . . . scaffold36118 WUBlastX LTR_Gypsy 1135 1554 32 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 613792 614427 173 - . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_L1 56237 56674 213 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_Kolobok 184078 184293 58 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1714 WUBlastX LTR_Gypsy 70188 70622 225 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_DIRS 164986 165381 202 - . . . . . -1 -1 -1 . . . scaffold36642 WUBlastX LINE_L1-Tx1 2365 2808 31 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold36642 WUBlastX LINE_L1-Tx1 3237 3746 55 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold525 WUBlastX LINE_L2 172936 173283 247 - . . scaffold525 GLEAN mRNA 146699 175472 0.279546 - . ID=CGI_10008575; scaffold280 WUBlastX LTR_Pao 909756 910226 92 + . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LTR_Pao 41849 42388 249 - . . scaffold474 GLEAN mRNA 31807 44448 0.711345 + . ID=CGI_10007591; scaffold867 WUBlastX LTR_Gypsy 620336 620497 54 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 620779 621102 73 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 322880 323596 230 - . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX DNA_Harbinger 13683 13898 65 - . . scaffold1810 GLEAN mRNA 13680 13841 1 - . ID=CGI_10007554; scaffold1337 WUBlastX LINE_L1 299489 300346 90 - . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX LINE_Penelope 329168 329503 71 + . . scaffold43964 GLEAN mRNA 323260 333228 0.634978 + . ID=CGI_10014658; scaffold588 WUBlastX LINE_Penelope 103057 103269 121 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 103493 103891 66 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 188117 188302 58 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 188790 188942 20 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_RTE-X 390278 390910 43 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_DIRS 1356488 1356880 234 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_L1-Tx1 13837 14883 68 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 130977 131147 23 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX DNA_TcMar-Tc1 695275 695754 145 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 1324100 1324261 27 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LTR_Gypsy-Cigr 47008 49701 1755 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 107848 107997 32 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LTR_Gypsy-Cigr 313 3888 1939 - . . . . . -1 -1 -1 . . . scaffold1070 WUBlastX LINE_CR1 95756 96745 141 - . . scaffold1070 GLEAN mRNA 87834 98509 0.499838 - . ID=CGI_10004521; scaffold1714 WUBlastX LINE_CR1-L2 244139 244705 141 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_CR1 436650 437264 218 + . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold39358 WUBlastX LTR_Ngaro 19927 20073 40 + . . . . . -1 -1 -1 . . . scaffold1824 WUBlastX LTR_DIRS 95985 96989 112 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX DNA_TcMar-Fot1 29613 30563 220 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_RTE-X 548386 548898 107 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Pao 630693 632423 1163 - . . . . . -1 -1 -1 . . . scaffold34910 WUBlastX LTR_Gypsy-Cigr 4529 6091 944 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LTR_Pao 448 786 259 + . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_L2 105460 105678 95 - . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_L2 105672 106019 158 - . . . . . -1 -1 -1 . . . scaffold1256 WUBlastX LTR_Gypsy 78656 79456 245 + . . scaffold1256 GLEAN mRNA 77329 79943 0.81415 + . ID=CGI_10005427; scaffold204 WUBlastX DNA_Kolobok 956547 956933 77 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok 956966 957115 42 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 281696 282052 102 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold1191 WUBlastX LINE_RTE-X 19909 20397 247 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_L1-Tx1 643764 644567 159 + . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LTR_Gypsy 71416 73701 1459 + . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 40285 40482 30 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Copia 929920 930447 289 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 526838 527224 275 - . . . . . -1 -1 -1 . . . scaffold37760 WUBlastX LTR_DIRS 21155 21223 35 - . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold589 WUBlastX DNA_IS4EU 50742 51284 103 + . . . . . -1 -1 -1 . . . scaffold786 WUBlastX DNA_TcMar-Marin 364848 365168 94 + . . scaffold786 GLEAN mRNA 348664 365361 0.5 - . ID=CGI_10013709; scaffold591 WUBlastX DNA_TcMar-Tc1 1050193 1050426 145 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_TcMar-Tc1 293114 293521 102 - . . . . . -1 -1 -1 . . . scaffold296 WUBlastX LINE_L2 245057 245473 264 + . . scaffold296 GLEAN mRNA 234533 247179 0.999949 - . ID=CGI_10011701; scaffold1862 WUBlastX LINE_CR1 257900 258211 149 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1607694 1607756 30 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold43 WUBlastX DNA_Crypton 115284 116258 207 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 428241 428513 102 + . . . . . -1 -1 -1 . . . scaffold1252 WUBlastX LINE_RTE-BovB 207514 208185 223 + . . . . . -1 -1 -1 . . . scaffold42328 WUBlastX LINE_RTE-X 78855 79613 141 - . . scaffold42328 GLEAN mRNA 76482 81194 0.999612 + . ID=CGI_10006554; scaffold290 WUBlastX LINE_RTE-BovB 60097 60453 256 - . . scaffold290 GLEAN mRNA 51430 74485 0.815504 + . ID=CGI_10018531; scaffold309 WUBlastX LINE_L1-Tx1 173631 174686 403 - . . . . . -1 -1 -1 . . . scaffold309 WUBlastX LINE_L1-Tx1 174682 177087 1448 - . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_CR1 31346 31420 53 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_L2 89430 90029 200 - . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LTR_Gypsy 10437 11351 257 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy 90747 91028 71 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_R2-Hero 131122 131598 282 - . . . . . -1 -1 -1 . . . scaffold296 WUBlastX LINE_RTE-X 5149 5592 223 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX DNA_PiggyBac 197529 197639 77 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_Sola 132261 132542 70 + . . . . . -1 -1 -1 . . . scaffold34872 WUBlastX LTR_Pao 5 1045 271 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 87441 88322 213 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold44008 WUBlastX LTR_Gypsy-Cigr 19669 20151 119 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 20309 20458 71 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 27392 27874 119 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 28032 28181 71 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_Gypsy 595239 595277 26 - . . . . . -1 -1 -1 . . . scaffold287 WUBlastX DNA_Harbinger 73561 74505 194 - . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX DNA_Harbinger 126655 127068 120 + . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX DNA_Harbinger 127585 127692 53 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Kolobok 293699 293773 36 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold783 WUBlastX LINE_L1 268206 268403 78 + . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LINE_L1 6316 6957 256 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_L1 148325 148966 254 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 224267 224992 296 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_RTE-X 86736 87104 40 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LTR_Ngaro 182272 183141 247 + . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX LTR_Gypsy 124516 124785 71 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Pao 451563 455030 2276 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold102 WUBlastX LTR_Gypsy 1431326 1432345 253 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX DNA_hAT 109348 109917 161 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold203 WUBlastX LINE_L2 366413 366517 27 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_L2 366514 366609 74 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_L2 366597 367262 193 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 574396 574626 141 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 574629 574847 164 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 148142 148546 147 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX DNA_Kolobok 121725 121985 148 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold43726 WUBlastX LINE_RTE-X 188111 188245 67 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_Sola 523815 524303 137 - . . . . . -1 -1 -1 . . . scaffold33026 WUBlastX DNA_TcMar-Tc1 12620 12889 89 - . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX LTR_Pao 331940 332104 28 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold492 WUBlastX LTR_Gypsy-Troyk 115175 116746 1361 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_Gypsy-Troyk 116754 116897 36 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_Gypsy-Troyk 117115 118422 1005 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_Gypsy-Troyk 118422 118481 52 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy 342871 343188 234 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX DNA_En-Spm 55570 56475 255 - . . scaffold40638 GLEAN mRNA 41609 59545 0.679878 - . ID=CGI_10004286; scaffold64 WUBlastX DNA_Harbinger 117085 117243 47 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Fot1 394816 394971 75 - . . scaffold794 GLEAN mRNA 378971 426999 0.796099 - . ID=CGI_10017158; scaffold743 WUBlastX LINE_RTE-X 110392 110721 121 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_RTE-X 42836 43849 235 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 401116 401679 217 - . . . . . -1 -1 -1 . . . scaffold37816 WUBlastX LTR_Ngaro 31317 31790 69 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Crypton 389604 389783 96 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_Crypton 389942 390325 190 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; C34552 WUBlastX DNA_IS4EU 12622 13455 287 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 52307 52675 47 + . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_L1 88545 89024 282 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1 127048 127860 167 + . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_L1-Tx1 241881 242012 75 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_RTE-X 116671 117369 261 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 560807 561241 42 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Ngaro 222882 223370 298 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 245627 245893 94 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 246449 246598 82 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy 194533 194664 35 + . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX DNA_hAT-hATw 87108 87497 66 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_L1 687055 687429 105 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold1786 WUBlastX LINE_RTE-X 50931 51044 39 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 706960 707133 80 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 707546 707713 82 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_RTE-X 389128 390144 147 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy 40602 40691 21 - . . . . . -1 -1 -1 . . . scaffold35960 WUBlastX LINE_L1-Tx1 19703 20311 305 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_RTE-X 174232 174705 205 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold3 WUBlastX LTR_Ngaro 973297 973938 146 - . . scaffold3 GLEAN mRNA 958982 982969 0.663393 + . ID=CGI_10027317; scaffold172 WUBlastX LTR_Ngaro 279507 279881 212 - . . scaffold172 GLEAN mRNA 274118 285723 0.998306 - . ID=CGI_10013528; scaffold41242 WUBlastX LINE_L1 100322 100459 77 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1 101063 101347 69 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold1016 WUBlastX LINE_L1-Tx1 130280 130708 210 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 131467 131892 108 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1-Tx1 161822 161956 23 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 76727 77086 80 + . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX DNA_Kolobok 63062 63214 39 + . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX DNA_Kolobok 63243 63518 150 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63635 63904 60 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 64264 64476 27 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold169 WUBlastX DNA_Sola 785177 785770 151 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX DNA_Harbinger 358637 359155 276 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX DNA_Harbinger 359263 359385 37 - . . . . . -1 -1 -1 . . . C35068 WUBlastX DNA_hAT-Tip100 4704 4988 40 + . . C35068 GLEAN mRNA 2139 13943 0.995001 + . ID=CGI_10001414; scaffold1480 WUBlastX LINE_R2 137670 138191 271 - . . scaffold1480 GLEAN mRNA 131830 138953 0.535981 - . ID=CGI_10008637; scaffold1670 WUBlastX LINE_L1-Tx1 464461 465078 139 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold1189 WUBlastX LINE_CR1 488807 489331 388 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Pao 102259 103233 204 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_DIRS 215049 215945 308 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold21736 WUBlastX LTR_Gypsy 167 895 274 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Harbinger 226625 226969 131 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_Harbinger 138790 139134 131 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold334 WUBlastX DNA_Harbinger 724815 724892 40 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_Harbinger 724864 725190 168 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 190470 190601 94 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_DIRS 52297 52776 46 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_CR1 127436 128191 37 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX DNA_IS4EU 290533 290751 94 - . . scaffold34 GLEAN mRNA 290500 292814 0.678889 - . ID=CGI_10015943; scaffold42490 WUBlastX LINE_L1-Tx1 63591 63710 41 - . . . . . -1 -1 -1 . . . scaffold43522 WUBlastX LINE_L1-Tx1 101177 102064 333 - . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold1601 WUBlastX LTR_Gypsy 254947 255639 146 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_CR1 162476 163021 189 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold1281 WUBlastX LTR_DIRS 12597 12875 193 - . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold767 WUBlastX LTR_Gypsy 91583 92836 255 - . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_RTE-X 12448 12597 80 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_L2 287829 288089 38 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_L2 288351 288716 145 + . . . . . -1 -1 -1 . . . scaffold788 WUBlastX LINE_L1 34563 36326 136 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_CR1-L2 106944 107234 142 + . . scaffold1800 GLEAN mRNA 94548 111010 0.999101 - . ID=CGI_10016398; scaffold1800 WUBlastX LINE_CR1-L2 107215 107853 208 + . . scaffold1800 GLEAN mRNA 94548 111010 0.999101 - . ID=CGI_10016398; scaffold3 WUBlastX LTR_Ngaro 1315938 1316159 115 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold145 WUBlastX LTR_Gypsy-Gmr1 792219 792773 235 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 125034 125897 59 - . . . . . -1 -1 -1 . . . scaffold32096 WUBlastX DNA_Harbinger 48 287 153 - . . . . . -1 -1 -1 . . . scaffold32096 WUBlastX DNA_Harbinger 283 696 217 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_L2 500438 500731 51 + . . . . . -1 -1 -1 . . . scaffold35072 WUBlastX LTR_Caulimoviru 18687 19244 213 - . . . . . -1 -1 -1 . . . scaffold42604 WUBlastX LTR_DIRS 136599 136745 47 + . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_DIRS 78078 78305 85 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX DNA_TcMar-Tc1 72966 73313 55 - . . scaffold1449 GLEAN mRNA 67747 83098 0.84051 + . ID=CGI_10010691; scaffold1402 WUBlastX LINE_L1-Tx1 138529 138921 77 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LTR_Pao 194203 194478 108 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 764715 765770 236 + . . . . . -1 -1 -1 . . . scaffold1807 WUBlastX LTR_DIRS 44531 45811 106 + . . scaffold1807 GLEAN mRNA 37010 47983 0.990974 - . ID=CGI_10004644; scaffold1807 WUBlastX LTR_DIRS 45808 46053 92 + . . scaffold1807 GLEAN mRNA 37010 47983 0.990974 - . ID=CGI_10004644; scaffold1807 WUBlastX LTR_DIRS 46056 46349 51 + . . scaffold1807 GLEAN mRNA 37010 47983 0.990974 - . ID=CGI_10004644; scaffold142 WUBlastX LTR_Pao 1231212 1231289 24 - . . . . . -1 -1 -1 . . . C25178 WUBlastX LTR_Ngaro 1223 1474 132 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_DIRS 27031 27417 256 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy-Gmr1 954695 955333 377 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1-Tx1 870482 871264 163 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1-Tx1 871443 871985 90 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Merlin 397748 398020 111 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Merlin 398007 398576 247 - . . . . . -1 -1 -1 . . . C26612 WUBlastX DNA_Merlin 1952 2611 382 + . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX DNA_TcMar-Marin 42019 42411 240 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_RTE-X 441424 441627 128 + . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX DNA_TcMar-Tc1 56210 56383 88 - . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_CR1 89750 90079 175 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX DNA_Maverick 348403 349026 409 - . . scaffold1462 GLEAN mRNA 348326 383431 0.995853 + . ID=CGI_10014386; scaffold37668 WUBlastX LTR_Ngaro 30596 31501 317 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 543088 543273 36 + . . . . . -1 -1 -1 . . . scaffold38966 WUBlastX DNA_TcMar-Tc1 52435 52818 105 + . . scaffold38966 GLEAN mRNA 40711 56502 0.505852 + . ID=CGI_10003113; scaffold1780 WUBlastX LTR_Gypsy 133969 134916 188 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_TcMar-Marin 552166 552453 191 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold1665 WUBlastX LINE_RTE-X 421761 422432 137 + . . . . . -1 -1 -1 . . . C26726 WUBlastX DNA_TcMar-Tc1 501 1235 351 + . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LTR_Gypsy 27441 27581 38 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 11012 11521 463 + . . . . . -1 -1 -1 . . . scaffold29 WUBlastX DNA_Zator 2 883 460 - . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_Pao 87170 88246 77 + . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy 40720 41070 56 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 794682 794822 56 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Gypsy 3924 4088 53 - . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_En-Spm 191487 191606 57 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191942 193129 312 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold43280 WUBlastX LTR_Gypsy 170807 170974 60 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold38026 WUBlastX LTR_Gypsy 27080 27547 90 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold43066 WUBlastX DNA_Harbinger 96844 97398 258 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 1074920 1075783 309 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_DIRS 278811 279275 218 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 187942 188436 218 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 187942 188436 218 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 188451 188933 284 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188451 188933 284 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold118 WUBlastX DNA_MuDR 19208 20164 295 - . . . . . -1 -1 -1 . . . scaffold118 WUBlastX DNA_MuDR 20313 20675 56 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_CR1 219588 219692 24 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_DIRS 457037 457615 231 - . . . . . -1 -1 -1 . . . scaffold409 WUBlastX DNA_TcMar-Marin 60209 60439 57 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold149 WUBlastX LINE_L1 425968 427578 267 + . . . . . -1 -1 -1 . . . scaffold1756 WUBlastX LINE_RTE-X 13819 14355 184 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 104502 104669 107 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 104684 105583 169 + . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_DIRS 10667 10996 137 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 714335 715531 368 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Ngaro 28694 29110 34 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Ngaro 10559 11071 208 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_L2 41550 42206 288 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_L2 42314 42670 113 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_hAT-hATw 135238 135354 36 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold500 WUBlastX LINE_CR1 37977 38549 85 - . . . . . -1 -1 -1 . . . scaffold40526 WUBlastX LTR_DIRS 57150 57362 157 - . . . . . -1 -1 -1 . . . scaffold40526 WUBlastX LTR_DIRS 57388 57933 394 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_Kolobok 331938 332156 116 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 332284 332553 62 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 333036 333284 93 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold1307 WUBlastX LINE_RTE-BovB 103705 105054 324 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_RTE-BovB 105247 105510 142 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 132295 132501 21 - . . . . . -1 -1 -1 . . . scaffold1696 WUBlastX DNA_TcMar-Marin 25529 26086 262 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy-Cigr 255352 255618 176 - . . . . . -1 -1 -1 . . . C32606 WUBlastX LTR_Gypsy 10978 12075 514 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_L2 754353 754541 43 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy 166121 166156 28 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold502 WUBlastX LTR_Gypsy 182328 182453 49 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 240767 241126 67 - . . . . . -1 -1 -1 . . . scaffold33610 WUBlastX LTR_Gypsy 6966 8126 450 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX DNA_MuDR 36611 36988 59 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX DNA_MuDR 37124 38593 472 - . . . . . -1 -1 -1 . . . scaffold39594 WUBlastX LINE_L2 68407 69537 496 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 707334 707714 307 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_Penelope 246898 247413 261 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_Penelope 247416 248201 311 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 67299 67706 42 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 197320 197838 341 + . . . . . -1 -1 -1 . . . scaffold40196 WUBlastX LINE_L1-Tx1 32 1327 434 + . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LTR_DIRS 72242 72844 386 - . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LTR_DIRS 72963 73610 128 - . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1-Tx1 162236 162730 26 - . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1-Tx1 165126 165695 95 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX DNA_TcMar-Marin 111195 111599 240 - . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-X 316565 317497 430 - . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-X 317482 317652 132 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_TcMar-Tc1 2266 2775 301 + . . . . . -1 -1 -1 . . . C30988 WUBlastX LINE_CR1-L2 6501 6992 102 + . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Gypsy-Cigr 8011 8217 87 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold43608 WUBlastX LTR_Gypsy 193761 194288 434 + . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LTR_DIRS 140068 140583 329 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold1708 WUBlastX LTR_Ngaro 69890 70282 41 + . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy 63980 64261 56 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1792 WUBlastX LTR_Gypsy 331049 332011 170 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold38056 WUBlastX LINE_RTE-X 46621 47244 302 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 282112 282753 387 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX DNA_TcMar-Tc1 72301 72957 387 - . . scaffold1449 GLEAN mRNA 67747 83098 0.84051 + . ID=CGI_10010691; scaffold1733 WUBlastX LINE_L1-Tx1 219651 219959 36 - . . . . . -1 -1 -1 . . . C31370 WUBlastX LTR_Gypsy 2477 3391 177 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_L2 304775 305032 79 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_L2 305178 306041 412 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_CR1-L2 296626 297246 177 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 128438 129649 277 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 392471 393205 171 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 393570 393947 312 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_CR1-L2 324492 326024 495 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 1285273 1285620 110 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 1285626 1285763 70 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 1286055 1286651 368 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 1286657 1286713 36 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 665743 667158 652 - . . . . . -1 -1 -1 . . . scaffold38310 WUBlastX DNA_hAT-hATw 44828 46222 588 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1072255 1072635 53 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 331013 331156 47 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy-Cigr 157927 159003 675 - . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 114105 114830 231 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 115025 115186 161 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_L2 177885 178298 29 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LTR_Pao 69378 69818 332 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LTR_Gypsy 91215 91373 30 - . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_Gypsy 141573 141899 174 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; C27146 WUBlastX LTR_Gypsy 3451 4188 202 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_Gypsy 160285 160395 32 - . . scaffold1321 GLEAN mRNA 144678 167818 0.544485 + . ID=CGI_10010664; scaffold1154 WUBlastX DNA_PiggyBac 173706 174545 333 + . . scaffold1154 GLEAN mRNA 126524 188335 0.933838 - . ID=CGI_10026155; scaffold38854 WUBlastX LTR_Gypsy 35051 35146 34 + . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LTR_Gypsy 35541 35621 33 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L1-Tx1 901895 903010 337 + . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX DNA_hAT-Tip100 29535 30812 576 - . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX DNA_hAT-Tip100 30809 31099 74 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L1-Tx1 600773 601087 66 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX DNA_PiggyBac 124204 124674 196 - . . scaffold942 GLEAN mRNA 113666 137722 0.300224 + . ID=CGI_10019154; scaffold142 WUBlastX LTR_Gypsy 1225489 1226337 162 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 534499 534846 268 - . . . . . -1 -1 -1 . . . scaffold309 WUBlastX DNA_hAT-Tip100 137537 139081 634 - . . . . . -1 -1 -1 . . . scaffold309 WUBlastX DNA_hAT-Tip100 139389 139682 113 - . . . . . -1 -1 -1 . . . scaffold823 WUBlastX LTR_Gypsy 59986 60549 473 + . . scaffold823 GLEAN mRNA 49313 67666 0.999676 - . ID=CGI_10004169; scaffold1054 WUBlastX LTR_Gypsy 112746 113828 344 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1 4812 5081 45 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX RC_Helitron 5148 6428 63 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold43244 WUBlastX LINE_RTE-X 55736 56251 151 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Gypsy 655224 655667 27 + . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1-Tx1 23229 23366 59 + . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1-Tx1 23386 23733 144 + . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1-Tx1 23697 23939 66 + . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1-Tx1 24250 24903 192 + . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1-Tx1 24905 25609 141 + . . . . . -1 -1 -1 . . . scaffold1464 WUBlastX LINE_RTE-X 27377 28975 445 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LTR_Gypsy 74396 75820 842 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1 153684 153770 21 - . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_RTE-BovB 48320 49597 560 - . . . . . -1 -1 -1 . . . scaffold39500 WUBlastX LTR_Gypsy 18832 19524 273 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 56304 56807 103 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 1833110 1833313 133 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Ngaro 468390 469151 384 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold1593 WUBlastX LINE_Penelope 44928 45071 56 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 444672 445316 379 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L1-Tx1 52416 52685 44 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L1-Tx1 135356 135532 39 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 229634 229900 36 - . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_Penelope 162914 164800 753 - . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LINE_DRE 39065 39400 53 - . . . . . -1 -1 -1 . . . scaffold35950 WUBlastX DNA_TcMar-Tc1 27902 28087 61 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LTR_Copia 95925 96194 62 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold1213 WUBlastX DNA_hAT-Tip100 359063 359497 68 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold1703 WUBlastX DNA_PiggyBac 91610 91711 29 + . . scaffold1703 GLEAN mRNA 88691 94932 1 + . ID=CGI_10023040; scaffold42880 WUBlastX DNA_PiggyBac 115369 115629 54 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_L2 373159 373419 37 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold1093 WUBlastX LINE_CR1-L2 82044 82265 83 + . . scaffold1093 GLEAN mRNA 77464 87990 0.558336 + . ID=CGI_10019787; scaffold40822 WUBlastX LINE_CR1 90648 91310 35 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L2 133273 133326 23 - . . scaffold631 GLEAN mRNA 131392 145592 0.831917 - . ID=CGI_10014172; scaffold1307 WUBlastX LTR_Gypsy 592125 592307 94 + . . scaffold1307 GLEAN mRNA 586550 596673 0.992394 + . ID=CGI_10023769; scaffold581 WUBlastX DNA_En-Spm 197904 198173 83 - . . scaffold581 GLEAN mRNA 197152 206745 0.808206 - . ID=CGI_10013741; scaffold1272 WUBlastX LTR_Ngaro 39554 39655 45 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_DIRS 341118 341384 40 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Ngaro 299334 299507 73 - . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy 46887 46982 25 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LTR_Gypsy 597197 597286 28 - . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LTR_Gypsy 5599 6123 73 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Gypsy 70820 71005 24 + . . scaffold964 GLEAN mRNA 66518 70854 0.999999 - . ID=CGI_10009729; scaffold964 WUBlastX LTR_Gypsy 70820 71005 24 + . . scaffold964 GLEAN mRNA 70913 72246 0.544809 + . ID=CGI_10009730; scaffold38704 WUBlastX LTR_Gypsy 53260 53376 67 - . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX LTR_Gypsy 8493 8669 36 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX DNA_hAT-Blackja 12097 12306 67 + . . . . . -1 -1 -1 . . . C26654 WUBlastX RC_Helitron 33 389 79 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_I 446102 446746 26 - . . scaffold365 GLEAN mRNA 445580 454152 1 - . ID=CGI_10022738; scaffold737 WUBlastX LINE_I 94826 95164 26 + . . . . . -1 -1 -1 . . . scaffold37946 WUBlastX DNA_IS4EU 14536 14637 59 + . . scaffold37946 GLEAN mRNA 2025 20198 0.734311 + . ID=CGI_10002553; scaffold767 WUBlastX DNA_IS4EU 102307 102426 24 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX DNA_IS4EU 102498 102641 60 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_IS4EU 129544 130173 60 - . . scaffold1730 GLEAN mRNA 128597 135866 0.888729 - . ID=CGI_10012255; scaffold1599 WUBlastX LINE_Penelope 246612 246650 21 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold1722 WUBlastX DNA_TcMar-Marin 280237 280353 36 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_Penelope 49841 50023 79 - . . . . . -1 -1 -1 . . . scaffold38974 WUBlastX LINE_Penelope 46562 46996 45 - . . . . . -1 -1 -1 . . . C10245 WUBlastX LINE_Penelope 5 154 59 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_TcMar-Marin 394187 394393 49 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold343 WUBlastX DNA_TcMar-Marin 57403 57906 44 + . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX DNA_TcMar-Marin 29336 29560 57 - . . . . . -1 -1 -1 . . . scaffold174 WUBlastX DNA_TcMar-Marin 4055 4285 72 + . . . . . -1 -1 -1 . . . scaffold31002 WUBlastX DNA_TcMar-Marin 5317 5490 25 - . . . . . -1 -1 -1 . . . scaffold35896 WUBlastX LINE_L1 26002 26052 24 - . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold1100 WUBlastX LINE_L1 85798 86088 67 + . . . . . -1 -1 -1 . . . scaffold194 WUBlastX LINE_L1 140569 140868 22 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 550680 550967 21 + . . scaffold77 GLEAN mRNA 550497 553488 1 + . ID=CGI_10027984; scaffold723 WUBlastX LINE_L1 313432 313908 51 + . . scaffold723 GLEAN mRNA 313507 313764 0.481188 + . ID=CGI_10015269; scaffold290 WUBlastX LINE_L1 310082 310255 81 + . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LINE_L1 57902 58120 42 - . . scaffold1833 GLEAN mRNA 49110 69658 0.917044 + . ID=CGI_10007300; scaffold1682 WUBlastX LINE_L1 430039 430290 34 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 217682 217909 31 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold145 WUBlastX DNA_Kolobok 997065 997526 45 - . . . . . -1 -1 -1 . . . scaffold1366 WUBlastX LINE_RTE-BovB 109453 109809 39 - . . scaffold1366 GLEAN mRNA 109000 119073 0.999351 + . ID=CGI_10012291; scaffold49 WUBlastX LINE_RTE-BovB 294018 294161 50 + . . scaffold49 GLEAN mRNA 270599 295772 0.644326 - . ID=CGI_10013286; scaffold348 WUBlastX LINE_RTE-X 712643 712837 42 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 462681 462872 42 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LINE_RTE-X 174364 174555 43 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 584361 584501 40 - . . . . . -1 -1 -1 . . . scaffold42990 WUBlastX LINE_RTE-X 188641 188769 45 - . . scaffold42990 GLEAN mRNA 185047 195604 0.999676 + . ID=CGI_10008386; scaffold419 WUBlastX DNA_Maverick 1365225 1365461 40 - . . . . . -1 -1 -1 . . . C3369 WUBlastX LINE_RTE-BovB 1 114 53 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-BovB 167555 167716 49 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX LINE_RTE-X 66333 66605 67 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Sola 799859 800221 36 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_RTE-X 874649 874948 48 + . . scaffold492 GLEAN mRNA 857186 878137 0.999349 + . ID=CGI_10024870; scaffold728 WUBlastX LINE_L1-Tx1 211541 211705 74 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_Jockey 149597 150022 48 - . . . . . -1 -1 -1 . . . scaffold1747 WUBlastX LINE_L1-Tx1 25604 25849 42 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LINE_L1-Tx1 294235 294459 27 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LINE_L1-Tx1 85690 85992 22 + . . . . . -1 -1 -1 . . . scaffold44006 WUBlastX LINE_CR1-L2 430338 430568 96 + . . scaffold44006 GLEAN mRNA 422154 432525 0.999395 - . ID=CGI_10015593; scaffold1397 WUBlastX LINE_CR1-L2 318292 318384 41 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LTR_Gypsy-Cigr 342220 342450 85 - . . scaffold1711 GLEAN mRNA 341811 351623 0.999555 + . ID=CGI_10015612; scaffold1816 WUBlastX LTR_Pao 252914 253252 22 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX LINE_L2 196572 197321 22 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1382 WUBlastX LINE_L2 272001 272585 29 + . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX LTR_DIRS 34794 34910 48 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_hAT-Ac 762279 762488 101 + . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LINE_Jockey 52427 52504 23 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Gypsy 494644 494862 21 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 1017757 1018191 26 + . . scaffold733 GLEAN mRNA 1017652 1019905 0.995936 + . ID=CGI_10025901; scaffold21 WUBlastX LTR_Gypsy 13362 13796 26 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX DNA_IS4EU 343080 343475 91 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold804 WUBlastX DNA_IS4EU 162078 162572 32 + . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold1138 WUBlastX DNA_IS4EU 207121 207186 21 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_IS4EU 207723 208052 44 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Harbinger 131041 131169 25 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 630304 630504 78 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_Kolobok 80935 81123 74 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L1 548164 548445 72 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold348 WUBlastX LINE_L1 130235 130462 24 + . . scaffold348 GLEAN mRNA 129346 131334 0.749493 + . ID=CGI_10022971; scaffold38376 WUBlastX LINE_L1-Tx1 43791 43946 64 + . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_L1 125437 125562 27 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold36674 WUBlastX LINE_L1 33399 33590 82 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_L1 3004 3552 52 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_L1-Tx1 657749 657898 102 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1 253259 253387 38 + . . . . . -1 -1 -1 . . . scaffold36598 WUBlastX LTR_Ngaro 32661 32780 61 - . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX LINE_L2 27362 27490 50 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX DNA_TcMar-Fot1 316246 316608 67 + . . . . . -1 -1 -1 . . . scaffold793 WUBlastX DNA_NOF 67491 67610 31 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold433 WUBlastX LINE_RTE-X 283473 283751 60 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_RTE-BovB 143672 143926 58 - . . scaffold43026 GLEAN mRNA 135566 144191 0.699088 + . ID=CGI_10008550; scaffold42896 WUBlastX LINE_RTE-X 9102 9272 36 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_RTE-X 23183 23524 32 + . . scaffold1711 GLEAN mRNA 19250 25931 0.598612 + . ID=CGI_10015595; scaffold1497 WUBlastX LINE_RTE-BovB 40967 41155 57 - . . scaffold1497 GLEAN mRNA 38658 42952 0.927373 + . ID=CGI_10006963; scaffold43574 WUBlastX LINE_L1-Tx1 275612 275911 66 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX DNA_hAT-Tip100 238845 239093 77 - . . scaffold156 GLEAN mRNA 233811 241733 0.990897 + . ID=CGI_10026484; scaffold1733 WUBlastX LINE_CR1 164541 164837 35 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold38422 WUBlastX LINE_CR1 30413 30538 80 - . . scaffold38422 GLEAN mRNA 27073 31824 0.999996 - . ID=CGI_10002764; scaffold678 WUBlastX LINE_CR1 590530 590781 79 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 101958 102632 68 + . . scaffold759 GLEAN mRNA 101001 103047 0.957564 + . ID=CGI_10010775; scaffold759 WUBlastX DNA_hAT-Ac 73549 73776 47 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Pao 264349 264660 96 + . . . . . -1 -1 -1 . . . scaffold382 WUBlastX LINE_CR1-L2 1495 1707 79 - . . . . . -1 -1 -1 . . . scaffold37900 WUBlastX LINE_CR1 20370 20792 80 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold502 WUBlastX LINE_CR1 145698 146384 32 - . . . . . -1 -1 -1 . . . scaffold491 WUBlastX LINE_L2 48879 49217 59 + . . . . . -1 -1 -1 . . . scaffold1867 WUBlastX LINE_CR1 44547 44780 37 - . . . . . -1 -1 -1 . . . scaffold1366 WUBlastX LTR_Gypsy 31524 32135 53 + . . scaffold1366 GLEAN mRNA 30390 31955 0.743724 + . ID=CGI_10012283; scaffold1253 WUBlastX LTR_Gypsy 44178 44711 63 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold43122 WUBlastX LINE_L2 165464 165736 79 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2 25497 25922 42 + . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_Gypsy 3780 4325 95 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LTR_Gypsy 186028 186303 87 - . . . . . -1 -1 -1 . . . C34116 WUBlastX LTR_Gypsy 2634 2861 53 - . . . . . -1 -1 -1 . . . scaffold1088 WUBlastX LINE_R2-Hero 37533 37742 68 + . . scaffold1088 GLEAN mRNA 30301 38437 0.893641 - . ID=CGI_10003651; scaffold868 WUBlastX DNA_Kolobok 147383 147472 21 + . . . . . -1 -1 -1 . . . scaffold868 WUBlastX DNA_Kolobok 147610 147804 93 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_Penelope 329198 329701 50 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy 38597 38743 56 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_TcMar-Tc1 273241 273333 43 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_L2 13088 13372 58 - . . . . . -1 -1 -1 . . . scaffold49 WUBlastX LINE_CR1 193717 194286 36 - . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_L1 134414 134632 67 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_RTE-BovB 199721 200236 68 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_RTE-X 172501 172926 56 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 143391 143678 31 - . . scaffold3 GLEAN mRNA 140543 146890 0.72249 + . ID=CGI_10027280; scaffold422 WUBlastX LINE_RTE-X 185470 185691 80 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold35252 WUBlastX LINE_RTE-X 9647 9916 59 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 57842 58201 24 + . . scaffold290 GLEAN mRNA 51430 74485 0.815504 + . ID=CGI_10018531; scaffold586 WUBlastX LINE_RTE-X 177903 178190 68 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold1597 WUBlastX LINE_RTE-X 284743 284958 57 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_RTE-X 25998 26186 36 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_PiggyBac 228235 228351 71 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 63283 63657 21 - . . scaffold963 GLEAN mRNA 61192 70868 0.999999 - . ID=CGI_10015615; scaffold280 WUBlastX DNA_Sola 885617 885805 47 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX DNA_TcMar-Tc2 249825 250043 80 + . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_L1-Tx1 98254 98535 32 - . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold101 WUBlastX LTR_Gypsy-Cigr 572236 572460 44 - . . . . . -1 -1 -1 . . . scaffold44064 WUBlastX LINE_CR1 215306 215734 47 + . . scaffold44064 GLEAN mRNA 201756 215782 0.297034 - . ID=CGI_10016763; scaffold117 WUBlastX LINE_CR1 53831 54082 105 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold335 WUBlastX LINE_CR1 400177 400401 26 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_TcMar-Marin 279225 279386 27 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 453614 453685 30 - . . scaffold1896 GLEAN mRNA 449372 460411 0.989805 - . ID=CGI_10019651; C32714 WUBlastX LTR_Gypsy 8754 9290 51 - . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LTR_ERV1 37262 37336 38 + . . scaffold1084 GLEAN mRNA 31266 40802 0.801676 + . ID=CGI_10010075; scaffold38784 WUBlastX LTR_Gypsy 2013 2495 75 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Kolobok 503150 503293 55 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX RC_Helitron 141292 142239 20 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX DNA_IS4EU 21488 21754 53 + . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold1155 WUBlastX DNA_Kolobok-IS4 118446 118586 66 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX DNA_IS4EU 20573 20800 104 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LTR_Gypsy 41497 42003 36 + . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold315 WUBlastX DNA_Kolobok 41562 41783 61 - . . scaffold315 GLEAN mRNA 38585 42231 0.984467 + . ID=CGI_10020399; scaffold1036 WUBlastX DNA_IS4EU 67772 68227 52 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold1730 WUBlastX LINE_L1 69609 70250 36 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L1 256027 256314 66 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold419 WUBlastX LINE_L1 870410 870841 56 + . . . . . -1 -1 -1 . . . scaffold579 WUBlastX DNA_TcMar-Tc1 205917 206075 31 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold591 WUBlastX DNA_TcMar-Tc2 1078961 1079320 97 + . . scaffold591 GLEAN mRNA 1079117 1079341 0.732046 + . ID=CGI_10027597; scaffold1031 WUBlastX LINE_Penelope 9103 9324 28 - . . scaffold1031 GLEAN mRNA 3884 11736 0.84103 - . ID=CGI_10019690; scaffold1031 WUBlastX LINE_Penelope 10281 10424 56 - . . scaffold1031 GLEAN mRNA 3884 11736 0.84103 - . ID=CGI_10019690; scaffold681 WUBlastX DNA_P 268683 269009 101 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Gypsy 53360 53893 67 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold36118 WUBlastX LINE_RTE-X 24239 24508 92 - . . . . . -1 -1 -1 . . . scaffold1200 WUBlastX LINE_RTE-X 35102 35368 83 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_RTE-X 274957 275262 32 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_RTE-X 330197 330589 54 - . . scaffold109 GLEAN mRNA 303639 363474 0.446526 - . ID=CGI_10022113; scaffold1698 WUBlastX LINE_RTE-X 12209 12412 73 - . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_RTE-X 119806 119952 61 - . . scaffold44098 GLEAN mRNA 115382 139154 0.999935 - . ID=CGI_10017702; scaffold1204 WUBlastX LTR_Ngaro 74245 74325 23 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 636954 637373 62 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_TcMar-Tc1 229476 229697 66 - . . scaffold816 GLEAN mRNA 223398 238743 0.358147 + . ID=CGI_10015655; scaffold42268 WUBlastX DNA_TcMar-Tc1 127878 128183 42 + . . scaffold42268 GLEAN mRNA 125796 135049 0.955691 + . ID=CGI_10006563; scaffold79 WUBlastX DNA_TcMar-Tc1 261611 261952 67 - . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold825 WUBlastX LINE_L1-Tx1 197046 197501 38 - . . scaffold825 GLEAN mRNA 194651 220674 0.998225 + . ID=CGI_10012712; scaffold298 WUBlastX LTR_Gypsy-Cigr 312423 313022 91 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_Gypsy-Cigr 166097 166501 82 - . . . . . -1 -1 -1 . . . scaffold1723 WUBlastX LINE_CR1-L2 70507 70794 109 - . . . . . -1 -1 -1 . . . scaffold33082 WUBlastX LINE_CR1 7465 8112 40 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold42754 WUBlastX LINE_L2 30932 31195 71 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L2 77432 77623 32 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L2 78059 78130 31 - . . . . . -1 -1 -1 . . . C26206 WUBlastX LTR_Gypsy 28 324 136 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LTR_Gypsy 3 215 133 + . . . . . -1 -1 -1 . . . scaffold752 WUBlastX LTR_Gypsy 201299 201628 49 - . . . . . -1 -1 -1 . . . C31156 WUBlastX DNA_hAT-Restles 1385 1672 53 - . . . . . -1 -1 -1 . . . scaffold316 WUBlastX LTR_Gypsy 16781 17017 76 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold253 WUBlastX LTR_Gypsy 2602 2844 71 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold591 WUBlastX DNA_Harbinger 537256 537660 66 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_IS4EU 597578 597931 99 + . . . . . -1 -1 -1 . . . C32222 WUBlastX DNA_IS4EU 1308 1655 67 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_IS4EU 1724061 1724477 101 + . . scaffold1024 GLEAN mRNA 1693215 1725420 0.440752 - . ID=CGI_10028584; scaffold1080 WUBlastX DNA_IS4EU 247127 247402 121 + . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX DNA_IS4EU 59811 60644 32 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 314125 314202 20 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_ERV1 545392 545703 102 + . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX DNA_Kolobok 114770 114928 25 - . . scaffold43272 GLEAN mRNA 114590 115074 1 - . ID=CGI_10009668; scaffold39014 WUBlastX DNA_MuDR 51071 51409 96 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_MuDR 579743 579997 79 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; C32838 WUBlastX DNA_TcMar-Fot1 9314 9691 94 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX DNA_TcMar-Tc1 511693 512289 61 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L1 478503 478748 51 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L1 316632 317348 54 - . . scaffold753 GLEAN mRNA 307757 329663 0.499275 + . ID=CGI_10014210; scaffold34 WUBlastX LINE_I 64219 64362 43 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 283852 284004 27 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LINE_RTE-X 203709 203936 61 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 85430 85654 75 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 63448 63657 100 - . . scaffold963 GLEAN mRNA 61192 70868 0.999999 - . ID=CGI_10015615; scaffold361 WUBlastX DNA_Maverick 502406 502636 126 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 54456 54935 93 - . . . . . -1 -1 -1 . . . scaffold1873 WUBlastX LINE_RTE-X 179460 179558 29 - . . scaffold1873 GLEAN mRNA 176185 193037 0.487855 + . ID=CGI_10009300; scaffold395 WUBlastX LINE_L1-Tx1 361365 361535 65 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1-Tx1 430527 430763 63 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX DNA_TcMar-Tc1 111229 111372 94 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_TcMar-Tc1 276652 277014 80 + . . scaffold385 GLEAN mRNA 273365 289522 0.998167 - . ID=CGI_10011601; scaffold39900 WUBlastX LINE_CR1 5861 6169 59 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_CR1-L2 91097 92038 56 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; C32888 WUBlastX LINE_L2 11623 11673 23 - . . . . . -1 -1 -1 . . . C24942 WUBlastX LTR_Ngaro 1331 1720 107 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LTR_DIRS? 201053 201187 20 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS? 201192 201338 78 + . . scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold376 WUBlastX LTR_Gypsy 296408 296746 44 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Gypsy 296758 297036 22 - . . . . . -1 -1 -1 . . . scaffold1354 WUBlastX LINE_Jockey 170034 170225 24 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold535 WUBlastX LTR_Gypsy 286408 287325 77 + . . . . . -1 -1 -1 . . . scaffold424 WUBlastX DNA_hAT-Ac 94421 94936 52 + . . scaffold424 GLEAN mRNA 91671 98594 0.990391 - . ID=CGI_10014353; scaffold425 WUBlastX DNA_hAT-hATw 457191 457703 90 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_hAT-hATw 457791 458024 20 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 61342 61746 119 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 429171 429290 41 - . . . . . -1 -1 -1 . . . scaffold1636 WUBlastX LTR_Gypsy 5215 6234 63 + . . . . . -1 -1 -1 . . . C33204 WUBlastX LINE_L1-Tx1 12558 12785 34 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX DNA_Kolobok-Hyd 688368 688724 79 - . . scaffold156 GLEAN mRNA 669682 693584 0.721042 - . ID=CGI_10026516; scaffold3 WUBlastX DNA_Kolobok-Hyd 289380 289703 33 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold794 WUBlastX LINE_L2 285928 286371 83 + . . . . . -1 -1 -1 . . . scaffold227 WUBlastX LINE_Penelope 305761 305916 50 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_RTE-X 257523 257807 112 + . . scaffold305 GLEAN mRNA 250174 258948 0.912097 + . ID=CGI_10019124; scaffold1123 WUBlastX LINE_RTE-BovB 13815 14171 141 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold1186 WUBlastX LINE_RTE-X 70729 70809 46 + . . scaffold1186 GLEAN mRNA 62909 95132 0.584728 + . ID=CGI_10010593; scaffold1525 WUBlastX DNA_Maverick 253414 253734 115 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_Maverick 253737 253838 46 + . . . . . -1 -1 -1 . . . scaffold193 WUBlastX LINE_RTE-X 65278 65727 62 - . . scaffold193 GLEAN mRNA 59988 95620 0.99962 + . ID=CGI_10015222; scaffold808 WUBlastX LINE_L1-Tx1 202619 202729 26 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Pao 402609 403073 101 + . . . . . -1 -1 -1 . . . C7555 WUBlastX LTR_Gypsy 3 134 142 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LTR_Ngaro 90722 90997 54 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold410 WUBlastX DNA_Crypton 51909 52079 59 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX DNA_Crypton 91790 92035 73 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX DNA_Crypton 92771 92911 24 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Gypsy 512080 512487 121 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold1769 WUBlastX LTR_Gypsy 192152 192328 146 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LTR_Gypsy 287975 288178 64 + . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX LTR_Gypsy 102026 102652 121 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 1225973 1226578 134 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold170 WUBlastX DNA_Harbinger 124223 124456 132 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX RC_Helitron 143841 144401 66 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_R2-Hero 35276 35425 22 - . . scaffold1670 GLEAN mRNA 20416 44429 0.542324 + . ID=CGI_10017595; scaffold169 WUBlastX DNA_IS4EU 789244 789411 29 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_IS4EU 789579 789818 40 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Ngaro 14395 14694 115 - . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_TcMar-Marin 95065 95163 36 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_TcMar-Marin 57255 57491 64 + . . . . . -1 -1 -1 . . . scaffold40120 WUBlastX LINE_L1-Tx1 69162 69512 68 + . . scaffold40120 GLEAN mRNA 53643 82923 0.999676 + . ID=CGI_10003879; scaffold1719 WUBlastX LINE_L1-Tx1 331436 331666 134 + . . . . . -1 -1 -1 . . . scaffold43522 WUBlastX LINE_L1 118135 118752 96 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1 570279 570335 20 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_RTE-X 292807 293214 81 - . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_RTE-X 119843 120151 78 - . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LINE_RTE-X 42067 42399 52 - . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold22 WUBlastX LINE_RTE-X 242713 243132 78 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-X 215747 216061 68 + . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX DNA_Maverick 130239 130397 99 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-BovB 1047196 1047726 148 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Sola 325693 325962 34 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L1-Tx1 203566 203964 27 - . . scaffold189 GLEAN mRNA 162558 220166 0.999165 - . ID=CGI_10018675; scaffold581 WUBlastX LINE_L1-Tx1 301607 301741 42 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 334058 334399 99 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc1 709566 709955 112 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LINE_L1-Tx1 163496 163693 34 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold1687 WUBlastX DNA_Academ 187419 187676 80 - . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX DNA_Academ 187910 188119 42 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_PiggyBac 8218 8325 40 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Pao 894 1298 93 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L2 53025 53630 49 + . . . . . -1 -1 -1 . . . scaffold1070 WUBlastX LINE_L2 96873 96944 23 - . . scaffold1070 GLEAN mRNA 87834 98509 0.499838 - . ID=CGI_10004521; scaffold1791 WUBlastX LTR_Ngaro 100562 100831 100 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; scaffold1710 WUBlastX LTR_Ngaro 12739 13044 135 + . . . . . -1 -1 -1 . . . scaffold43494 WUBlastX LTR_Ngaro 53763 54062 99 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 456406 456549 88 - . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LTR_Gypsy 101113 101376 94 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 12887 13522 101 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_IS4EU 432193 432384 61 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX RC_Helitron 184080 184361 74 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX RC_Helitron 185184 185534 74 - . . . . . -1 -1 -1 . . . scaffold35070 WUBlastX DNA_Harbinger 16934 17749 129 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX DNA_Harbinger 30384 30521 70 - . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX DNA_Harbinger 3979 4251 111 - . . . . . -1 -1 -1 . . . scaffold42076 WUBlastX DNA_Harbinger 144347 144736 106 + . . scaffold42076 GLEAN mRNA 138926 144974 1 - . ID=CGI_10006087; scaffold1188 WUBlastX DNA_Kolobok 217203 217409 34 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold1798 WUBlastX DNA_IS4EU 29369 29530 39 - . . . . . -1 -1 -1 . . . scaffold1798 WUBlastX DNA_IS4EU 29684 29755 42 - . . . . . -1 -1 -1 . . . scaffold1798 WUBlastX DNA_IS4EU 30291 30395 50 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_Penelope 1186928 1187248 99 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_Penelope 26579 27124 76 + . . . . . -1 -1 -1 . . . scaffold36334 WUBlastX LINE_RTE-BovB 11124 11273 22 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_RTE-X 627627 627869 67 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold461 WUBlastX LINE_RTE-X 96224 96421 31 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_RTE-X 96445 96753 70 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LINE_RTE-X 147437 147796 96 - . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX LINE_RTE-BovB 126910 127437 51 + . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX LINE_RTE-BovB 127801 127932 69 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LINE_RTE-X 43375 43653 28 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Sola 1524400 1524879 140 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX DNA_TcMar-Tc1 14865 14984 20 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_TcMar-Tc1 62925 63182 113 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_PiggyBac 231360 232007 66 + . . . . . -1 -1 -1 . . . scaffold88 WUBlastX DNA_hAT-Tip100 5647 5862 56 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 8050 8151 28 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold524 WUBlastX LINE_CR1 453580 453951 39 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold150 WUBlastX LINE_L2 506027 506185 28 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L2 506149 506817 33 - . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX LINE_L2 21990 22700 50 - . . . . . -1 -1 -1 . . . scaffold38912 WUBlastX LINE_L2 6085 6420 85 - . . scaffold38912 GLEAN mRNA 2347 7051 1 + . ID=CGI_10003031; scaffold416 WUBlastX DNA_En-Spm 51836 52240 153 - . . . . . -1 -1 -1 . . . scaffold41472 WUBlastX DNA_Harbinger 18367 18873 107 + . . scaffold41472 GLEAN mRNA 5767 21457 0.999674 - . ID=CGI_10005140; scaffold730 WUBlastX RC_Helitron 183846 184205 64 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_R2-Hero 679149 679682 164 + . . scaffold313 GLEAN mRNA 678155 687721 0.369345 - . ID=CGI_10026618; C32918 WUBlastX DNA_TcMar-Fot1 9363 9725 67 + . . . . . -1 -1 -1 . . . scaffold1745 WUBlastX LTR_Ngaro 118140 118388 41 + . . scaffold1745 GLEAN mRNA 107455 123228 0.998783 - . ID=CGI_10005406; scaffold58 WUBlastX LINE_L1-Tx1 539793 540023 69 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 540023 540187 82 - . . . . . -1 -1 -1 . . . scaffold1763 WUBlastX LINE_RTE-X 538293 538439 68 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 103159 103425 96 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX DNA_Sola 443487 443720 47 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_hAT-Tip100 457528 457797 103 + . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L2 45182 45373 22 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Copia 721535 721714 59 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Copia 728345 728524 59 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold461 WUBlastX LTR_Gypsy 119451 119723 121 - . . . . . -1 -1 -1 . . . scaffold27 WUBlastX LTR_Gypsy 57402 58250 96 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 44133 44873 88 - . . scaffold86 GLEAN mRNA 43587 47639 0.943261 + . ID=CGI_10028132; scaffold501 WUBlastX LTR_Gypsy 1231182 1231334 59 - . . . . . -1 -1 -1 . . . scaffold36790 WUBlastX LTR_Ngaro 25463 25768 157 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold38920 WUBlastX DNA_Helitron 10459 11115 151 + . . . . . -1 -1 -1 . . . scaffold462 WUBlastX LINE_Penelope 4411 5175 109 + . . scaffold462 GLEAN mRNA 1402 8627 1 + . ID=CGI_10000714; scaffold993 WUBlastX LINE_RTE-BovB 99588 99836 137 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LINE_RTE-X 147554 147874 94 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LTR_DIRS 312804 313172 142 + . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LINE_RTE-X 10382 10618 68 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1-Tx1 12223 12477 124 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_DIRS 91700 93172 834 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold1388 WUBlastX LTR_Ngaro 152989 153441 354 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy-Cigr 180642 181949 642 + . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy-Gmr1 75712 76014 248 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold413 WUBlastX DNA_Helitron 279673 280605 22 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX DNA_Helitron 280690 281292 51 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Gypsy 54316 54960 161 + . . . . . -1 -1 -1 . . . scaffold41628 WUBlastX LTR_Gypsy 508 1863 1008 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LTR_Gypsy 94776 95054 49 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 599375 599971 247 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 299994 300503 158 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Pao 232256 232456 23 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 872197 872286 20 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_L2 220703 221389 101 + . . . . . -1 -1 -1 . . . scaffold37408 WUBlastX LINE_CR1-L2 43530 43805 143 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_DIRS 621097 621495 84 - . . . . . -1 -1 -1 . . . C32222 WUBlastX DNA_IS4EU 1368 1655 88 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 871283 871381 20 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 871381 871566 49 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 872431 872919 57 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 312214 312456 116 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold756 WUBlastX DNA_TcMar-Marin 166639 167262 124 + . . . . . -1 -1 -1 . . . scaffold1725 WUBlastX LINE_Penelope 60833 61537 72 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Penelope 179739 179969 69 - . . . . . -1 -1 -1 . . . scaffold40994 WUBlastX LINE_L1-Tx1 98867 99364 51 + . . . . . -1 -1 -1 . . . scaffold40994 WUBlastX LINE_L1-Tx1 99379 99591 24 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 616269 616505 32 - . . . . . -1 -1 -1 . . . scaffold787 WUBlastX DNA_PiggyBac 82363 82449 34 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_PiggyBac 251800 251904 24 - . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold315 WUBlastX LINE_RTE-X 304850 304948 43 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-X 305069 305290 24 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold422 WUBlastX LINE_RTE-X 185733 186137 51 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 186218 186340 23 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold31 WUBlastX LINE_RTE-X 171751 172242 61 - . . scaffold31 GLEAN mRNA 167305 183497 0.965717 + . ID=CGI_10013560; scaffold43940 WUBlastX DNA_TcMar-Marin 385088 385288 51 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 664176 664526 39 + . . scaffold77 GLEAN mRNA 661837 671903 1 - . ID=CGI_10027988; scaffold77 WUBlastX LINE_L1-Tx1 665488 665658 73 + . . scaffold77 GLEAN mRNA 661837 671903 1 - . ID=CGI_10027988; scaffold257 WUBlastX DNA_TcMar-Tc2 480599 481051 141 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 426908 428587 996 - . . scaffold257 GLEAN mRNA 408517 430332 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_DIRS 426908 428587 996 - . . scaffold257 GLEAN mRNA 415447 429822 0.479397 + . ID=CGI_10027911; scaffold288 WUBlastX LTR_DIRS 595646 597325 996 - . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX LTR_DIRS 32581 32931 178 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_L1-Tx1 175350 175535 38 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy-Cigr 502950 503342 312 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy-Cigr 503804 504472 412 - . . . . . -1 -1 -1 . . . scaffold1654 WUBlastX LINE_RTE-BovB 10739 11479 207 + . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 17794 18288 205 + . . . . . -1 -1 -1 . . . scaffold1872 WUBlastX LINE_Jockey 66193 66675 54 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 705681 706349 26 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 341276 342256 51 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold116 WUBlastX LTR_Gypsy 41751 42458 147 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 324098 324196 21 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_RTE-BovB 5673 5879 102 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX DNA_Harbinger 428897 429316 66 - . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 429650 430009 40 - . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold150 WUBlastX DNA_hAT-Ac 87236 87469 92 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_hAT-Ac 88316 88378 26 - . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX LINE_L1-Tx1 108034 108327 97 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold150 WUBlastX LINE_L1 577946 578098 33 + . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX LINE_RTE-BovB 11924 12214 137 - . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-X 119875 120120 45 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX DNA_Sola 163026 163565 133 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LTR_Gypsy 141641 141784 62 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX DNA_hAT-hATw 68200 69996 1088 + . . . . . -1 -1 -1 . . . C28588 WUBlastX LTR_Gypsy 4202 5710 1109 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX LTR_Gypsy 148773 149675 244 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold422 WUBlastX DNA_hAT-Tip100 840 1574 440 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_hAT-Tip100 1514 2890 743 + . . . . . -1 -1 -1 . . . C29022 WUBlastX LTR_Gypsy 1934 2176 35 + . . . . . -1 -1 -1 . . . C29022 WUBlastX LTR_Gypsy 2172 2330 125 + . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy 46593 47198 140 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_DIRS 1531966 1532640 130 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX DNA_Harbinger 112724 113137 105 - . . scaffold489 GLEAN mRNA 93550 113740 0.603671 - . ID=CGI_10020228; scaffold1445 WUBlastX LINE_L1 217647 218231 45 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; C24148 WUBlastX LINE_RTE-X 1542 1982 123 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 107017 107553 106 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LINE_RTE-BovB 215609 216097 119 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 423114 423806 23 + . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_DIRS 11476 11556 31 + . . . . . -1 -1 -1 . . . C28272 WUBlastX DNA_Sola 2439 2609 46 - . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Sola 216093 216899 179 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_L1-Tx1 162720 162992 32 + . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX LINE_L1-Tx1 23908 24405 133 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_RTE-X 4962 6428 701 + . . . . . -1 -1 -1 . . . C32228 WUBlastX LTR_Copia 6374 7396 610 + . . . . . -1 -1 -1 . . . C32228 WUBlastX LTR_Copia 7457 7831 131 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy-Cigr 226203 227789 765 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy-Cigr 224449 224847 164 - . . . . . -1 -1 -1 . . . C30608 WUBlastX LTR_Gypsy-Cigr 2118 2594 263 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_hAT-Tip100 228005 229984 1238 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 98237 98695 39 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LTR_Pao 596761 597189 186 + . . . . . -1 -1 -1 . . . scaffold120 WUBlastX DNA_Crypton 220071 220136 22 - . . scaffold120 GLEAN mRNA 195224 226189 0.999675 - . ID=CGI_10017534; scaffold43406 WUBlastX DNA_Harbinger 252079 252600 73 - . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX DNA_Harbinger 252947 253306 46 - . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX DNA_MuDR 86472 87032 91 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_MuDR 1259938 1260519 122 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_MuDR 1260584 1261126 50 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_RTE-X 16172 16684 95 - . . . . . -1 -1 -1 . . . scaffold38510 WUBlastX DNA_Sola 28534 28995 23 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 29349 29459 22 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold1707 WUBlastX LTR_ERV-Foamy 20876 21892 161 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Gypsy 520278 521045 203 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_TcMar-Tc1 196322 196744 75 + . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LTR_Gypsy-Cigr 95389 98157 1253 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 9738 10943 564 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 11986 12864 308 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 43301 43801 103 + . . . . . -1 -1 -1 . . . C33482 WUBlastX LINE_CR1-L2 4772 4942 69 + . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LTR_Gypsy 3254 3427 105 - . . . . . -1 -1 -1 . . . C31982 WUBlastX LTR_Ngaro 9066 9128 57 + . . . . . -1 -1 -1 . . . scaffold850 WUBlastX LTR_DIRS 76718 77434 136 - . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LTR_Ngaro 144544 144978 120 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Ngaro 278081 278311 166 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 390880 390993 63 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX RC_Helitron 184173 184640 100 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_R2-Hero 628737 628871 101 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_IS4EU 69976 70320 185 + . . . . . -1 -1 -1 . . . scaffold33502 WUBlastX LINE_Penelope 12107 12640 73 - . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L1 455807 456448 76 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 1049786 1050775 40 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-BovB 26456 26773 82 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold43988 WUBlastX LINE_RTE-X 60987 61370 167 - . . scaffold43988 GLEAN mRNA 49566 61691 0.999886 - . ID=CGI_10014965; C25176 WUBlastX LINE_RTE-X 1259 1783 141 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 362205 362648 129 - . . . . . -1 -1 -1 . . . C31246 WUBlastX LTR_Ngaro 7359 7979 146 - . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_TcMar-Tc1 57374 57853 178 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_TcMar-Tc1 615483 615821 59 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_L1-Tx1 41381 44806 886 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy-Troyk 527161 527418 138 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Pao 11025 11609 220 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; C31300 WUBlastX LTR_Gypsy 5428 5670 93 - . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX RC_Helitron 46341 46889 132 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 636768 637082 126 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold156 WUBlastX LINE_L1-Tx1 708406 709890 534 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_L1-Tx1 710593 711582 331 + . . . . . -1 -1 -1 . . . C26518 WUBlastX DNA_Harbinger 3265 3513 207 + . . . . . -1 -1 -1 . . . scaffold665 WUBlastX LINE_I 164790 165116 30 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_Gypsy 21574 21699 26 + . . . . . -1 -1 -1 . . . C32918 WUBlastX DNA_TcMar-Fot1 9363 9623 91 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 1029624 1030115 212 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LTR_Ngaro 73223 73879 160 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold41636 WUBlastX LINE_RTE-X 96622 96756 41 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 576298 576432 69 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold351 WUBlastX DNA_Sola 311679 312191 175 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; C31300 WUBlastX LTR_Gypsy 6113 7081 592 - . . . . . -1 -1 -1 . . . scaffold327 WUBlastX LINE_L2 30399 30899 158 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LTR_Gypsy 28938 29804 193 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 67828 68682 176 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Gypsy 94046 94786 185 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 70825 71475 154 + . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Ngaro 8939 9643 155 - . . . . . -1 -1 -1 . . . scaffold32912 WUBlastX LTR_Ngaro 5498 6100 151 + . . . . . -1 -1 -1 . . . scaffold331 WUBlastX DNA_En-Spm 37498 37629 33 - . . . . . -1 -1 -1 . . . scaffold331 WUBlastX DNA_En-Spm 37626 37994 132 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_DIRS 34139 34378 189 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_DIRS 34381 34530 39 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 438641 438928 171 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 438954 439073 44 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold750 WUBlastX LTR_Gypsy 444931 445482 172 + . . . . . -1 -1 -1 . . . scaffold841 WUBlastX DNA_IS4EU 25969 26454 162 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_TcMar-Marin 54445 54843 154 + . . . . . -1 -1 -1 . . . scaffold1001 WUBlastX LINE_RTE-X 129275 129733 193 - . . scaffold1001 GLEAN mRNA 107697 137690 0.433806 + . ID=CGI_10007119; scaffold787 WUBlastX LINE_RTE-X 209707 210168 94 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_PiggyBac 242184 242402 21 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX DNA_Maverick 90510 91046 180 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-X 764974 767292 1022 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Gypsy 487856 489790 1027 + . . scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; C31300 WUBlastX LTR_Gypsy 8687 8911 30 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy 1303706 1304620 397 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_CR1 43500 43958 68 + . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX LINE_CR1 100727 101077 114 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 397109 397210 23 + . . . . . -1 -1 -1 . . . scaffold37772 WUBlastX DNA_Maverick 22943 23248 175 - . . scaffold37772 GLEAN mRNA 22803 28480 0.678428 - . ID=CGI_10002493; scaffold170 WUBlastX LINE_RTE-X 107909 108076 91 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1-Tx1 210468 210734 92 - . . . . . -1 -1 -1 . . . scaffold36816 WUBlastX LINE_L2 6946 7119 47 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_IS4EU 171435 171740 103 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_Kolobok-IS4 307292 307447 28 + . . . . . -1 -1 -1 . . . scaffold43084 WUBlastX LINE_I 13042 13341 58 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX DNA_Harbinger 63446 64108 193 + . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX DNA_TcMar-Tc1 25874 26035 56 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1 10541 10936 90 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold40822 WUBlastX LINE_L1 44569 44691 29 - . . . . . -1 -1 -1 . . . scaffold766 WUBlastX LINE_L1-Tx1 63110 63505 89 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Gypsy 34490 36340 1880 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold1244 WUBlastX LINE_L2 137137 137244 34 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_L2 371007 371357 80 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold42784 WUBlastX LTR_Pao 53037 53546 58 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 80218 80451 45 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 528341 528643 135 - . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LTR_DIRS 40718 41257 100 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 172155 172577 203 - . . . . . -1 -1 -1 . . . scaffold42214 WUBlastX LTR_Gypsy 15735 15833 36 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Gypsy 1204831 1205172 79 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1 444857 446416 213 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 629486 629833 122 - . . . . . -1 -1 -1 . . . C31694 WUBlastX LINE_L1-Tx1 2 547 196 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Gypsy-Cigr 143987 146368 1296 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Gypsy 158219 160489 1155 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 461022 463529 1205 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 464102 464377 219 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 2016 4082 1451 - . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX LTR_Pao 117505 117672 129 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_CR1-L2 224267 224557 172 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1382 WUBlastX LTR_Gypsy 253043 253792 144 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Ngaro 876269 876547 131 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Ngaro 876735 876788 24 + . . . . . -1 -1 -1 . . . scaffold1742 WUBlastX DNA_Harbinger 140235 140597 62 - . . scaffold1742 GLEAN mRNA 139017 145553 0.542354 - . ID=CGI_10010934; scaffold1742 WUBlastX DNA_Harbinger 140734 141108 127 - . . scaffold1742 GLEAN mRNA 139017 145553 0.542354 - . ID=CGI_10010934; scaffold1581 WUBlastX DNA_IS4EU 30814 31575 109 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_L1-Tx1 3156 3245 35 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX DNA_TcMar-Marin 77412 77807 98 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Ngaro 304087 304563 223 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold1692 WUBlastX LINE_RTE-BovB 30793 30957 111 + . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_RTE-X 109161 109541 181 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold1699 WUBlastX DNA_PiggyBac 195479 195775 86 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_Proto2 5427 6239 20 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Maverick 157257 157562 70 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_Ngaro 648081 648188 32 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold1673 WUBlastX LINE_L1-Tx1 114615 114794 28 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L2 250952 251632 189 - . . . . . -1 -1 -1 . . . scaffold41380 WUBlastX LINE_RTE-BovB 66793 66834 20 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 66840 67109 65 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 67361 67609 93 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold1221 WUBlastX DNA_Kolobok 32951 33271 87 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Kolobok 34262 34471 51 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Kolobok 35092 35259 57 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Kolobok 35392 35634 93 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_TcMar-Fot1 668593 670182 199 - . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LINE_L1 216567 216677 24 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_RTE-BovB 130056 130142 26 - . . scaffold1551 GLEAN mRNA 130008 130199 0.776736 - . ID=CGI_10011474; scaffold43660 WUBlastX LTR_Gypsy 3544 4026 116 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_CR1 222970 223680 541 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold1066 WUBlastX LTR_Pao 109926 110816 778 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy-Cigr 117120 119957 2031 + . . . . . -1 -1 -1 . . . scaffold31222 WUBlastX LTR_Ngaro 6883 7335 252 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Harbinger 119552 119755 123 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 143717 143902 33 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Fot1 394801 394872 36 - . . scaffold794 GLEAN mRNA 378971 426999 0.796099 - . ID=CGI_10017158; scaffold11 WUBlastX LINE_RTE-X 53242 53439 73 - . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX LINE_RTE-X 106703 107416 167 + . . . . . -1 -1 -1 . . . scaffold40948 WUBlastX LTR_Pao 102685 104412 1120 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 258997 260058 367 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_CR1 83349 84128 147 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_L2 78825 79406 225 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX DNA_TcMar-Tc1 71505 72143 251 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX DNA_Crypton 127636 127800 64 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold1377 WUBlastX DNA_Crypton 127781 128170 138 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold339 WUBlastX DNA_Kolobok-IS4 14641 15081 116 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX DNA_Harbinger 256903 257406 153 - . . . . . -1 -1 -1 . . . scaffold42164 WUBlastX LINE_L1 146997 147722 203 - . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_RTE-BovB 141289 141549 72 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 494 1189 225 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 330742 331482 199 - . . scaffold1532 GLEAN mRNA 321703 334271 0.99935 + . ID=CGI_10028244; scaffold1532 WUBlastX LINE_RTE-X 330742 331482 199 - . . scaffold1532 GLEAN mRNA 325933 331440 0.918094 - . ID=CGI_10028245; scaffold488 WUBlastX LINE_RTE-X 69439 69618 91 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LINE_RTE-X 69620 69796 34 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LINE_RTE-X 69780 70460 133 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LTR_Gypsy 38530 42471 2225 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L2 15000 15245 56 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_CR1 49716 49793 52 + . . . . . -1 -1 -1 . . . scaffold1354 WUBlastX LINE_DRE 174521 174682 26 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold1736 WUBlastX DNA_Harbinger 656028 656240 130 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_Harbinger 536806 537177 180 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_Harbinger 537338 537517 85 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Harbinger 403351 403506 101 - . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1 16116 16427 84 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1521 WUBlastX LINE_RTE-X 336848 336931 29 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-X 51004 51486 98 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_L1-Tx1 115269 115553 74 + . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX LTR_Copia 148464 149909 871 - . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX LTR_Copia 150336 152705 1470 - . . . . . -1 -1 -1 . . . scaffold36642 WUBlastX LTR_Gypsy 30971 31858 375 - . . . . . -1 -1 -1 . . . scaffold36642 WUBlastX LTR_Gypsy 33534 34889 496 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_L1 568909 569091 82 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_L1 569094 569579 141 + . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX LINE_L1 63368 64387 208 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1-Tx1 144184 144861 52 + . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1-Tx1 145253 145834 106 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_RTE-X 166234 166749 65 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_RTE-BovB 388835 389233 280 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LTR_Gypsy-Troyk 45116 45427 190 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LTR_Gypsy-Troyk 45408 45866 140 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 317328 318620 799 - . . . . . -1 -1 -1 . . . scaffold37134 WUBlastX LTR_Gypsy 6006 6443 214 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX DNA_Maverick 198601 200091 665 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX DNA_Maverick 201207 201851 459 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Pao 91367 95734 2217 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LTR_Gypsy-Cigr 161566 162660 855 - . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_L1 50117 50521 35 - . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LINE_RTE-BovB 56411 56479 26 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 177681 178052 44 + . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_RTE-X 169591 170265 262 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX DNA_Sola 56458 57672 203 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 635605 636108 163 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 635605 636108 163 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold48 WUBlastX LTR_Gypsy 772748 774046 270 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Gypsy 264156 264623 37 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Kolobok-IS4 120039 120179 50 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 242740 242859 33 - . . . . . -1 -1 -1 . . . scaffold39078 WUBlastX LINE_L1-Tx1 59664 59948 79 - . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX LINE_L1 55714 56157 117 - . . . . . -1 -1 -1 . . . C25328 WUBlastX LINE_CR1 1015 1407 225 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_Penelope 276738 277391 97 + . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_RTE-X 38151 38600 146 + . . scaffold1283 GLEAN mRNA 32464 43957 1 + . ID=CGI_10011783; scaffold141 WUBlastX LTR_ERV1 149295 149336 38 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_Sola 96433 96972 25 + . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 19860 20765 181 - . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LINE_CR1 16430 16903 113 - . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LTR_Gypsy 72305 72445 35 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 38006 38170 40 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 457835 458350 69 + . . . . . -1 -1 -1 . . . scaffold1256 WUBlastX DNA_Harbinger 83274 83408 75 - . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LTR_Ngaro 118445 119245 220 + . . scaffold825 GLEAN mRNA 107602 120026 0.634689 - . ID=CGI_10012705; scaffold772 WUBlastX DNA_TcMar-Tc1 174587 174778 90 - . . scaffold772 GLEAN mRNA 173305 179319 1 + . ID=CGI_10016584; C30694 WUBlastX LTR_Gypsy 6553 7641 256 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_L1-Tx1 21358 22755 54 + . . . . . -1 -1 -1 . . . scaffold65 WUBlastX LINE_RTE-X 140671 141150 163 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-X 270932 271333 140 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-X 271377 271526 53 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_RTE-X 389233 390060 171 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_RTE-X 420295 420789 108 - . . . . . -1 -1 -1 . . . scaffold29534 WUBlastX LINE_RTE-X 1373 2812 158 + . . scaffold29534 GLEAN mRNA 32 6456 1 - . ID=CGI_10000544; scaffold748 WUBlastX LINE_RTE-X 259876 260394 115 - . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_L1 88952 89029 28 + . . scaffold42558 GLEAN mRNA 84864 89391 0.979088 + . ID=CGI_10007220; scaffold323 WUBlastX LINE_L1-Tx1 136514 136687 55 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L2 192883 193134 32 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_CR1-L2 150229 150387 93 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Gypsy 119829 120107 63 + . . scaffold1350 GLEAN mRNA 116715 124816 0.68864 + . ID=CGI_10017298; scaffold1350 WUBlastX LTR_Gypsy 119829 120107 63 + . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold39966 WUBlastX LTR_Gypsy 11591 12058 85 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; C28702 WUBlastX LTR_Gypsy 5038 5388 215 - . . . . . -1 -1 -1 . . . scaffold43066 WUBlastX LTR_Ngaro 93548 94363 247 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_L1-Tx1 98780 99055 234 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_L1-Tx1 100118 100264 43 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_L1-Tx1 100242 100463 77 - . . . . . -1 -1 -1 . . . scaffold33904 WUBlastX LINE_RTE-X 6209 6553 64 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LINE_RTE-X 209828 210748 301 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_DIRS 344457 345362 281 + . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX DNA_TcMar-Tc1 34719 35621 252 - . . scaffold1541 GLEAN mRNA 21231 36409 0.999675 + . ID=CGI_10017876; scaffold1448 WUBlastX LTR_Ngaro 28861 29199 131 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 29181 29684 161 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold41648 WUBlastX LTR_Gypsy 59281 59484 23 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_hAT-Tip100 721132 722031 282 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_hAT-Tip100 722186 722314 57 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold1836 WUBlastX LINE_RTE-X 36556 37593 94 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L2 1441295 1441579 81 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L2 1441602 1442162 205 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_DIRS 53208 53486 89 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_L1 631673 631807 39 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; C33730 WUBlastX LINE_L1 14178 14720 112 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-BovB 342498 342851 28 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_Rex-Babar 78032 78682 166 + . . . . . -1 -1 -1 . . . scaffold1612 WUBlastX DNA_Sola 10162 10617 138 - . . . . . -1 -1 -1 . . . scaffold1612 WUBlastX DNA_Sola 10614 11813 151 - . . . . . -1 -1 -1 . . . scaffold38272 WUBlastX LINE_L1-Tx1 39551 39787 104 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold425 WUBlastX DNA_Kolobok 143282 143530 96 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold1671 WUBlastX LINE_L1-Tx1 42357 42428 42 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1-Tx1 43044 43613 174 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_TcMar-Fot1 168120 168797 127 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_TcMar-Fot1 168802 168957 62 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_TcMar-Fot1 168911 169270 176 + . . . . . -1 -1 -1 . . . C36680 WUBlastX LINE_CR1 9894 9986 24 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold406 WUBlastX LTR_Gypsy-Cigr 63897 64007 76 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold424 WUBlastX LTR_Gypsy 66180 66377 94 - . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LINE_L1-Tx1 104854 105873 332 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 713797 713829 21 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Gypsy 490136 490378 146 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold1780 WUBlastX DNA_TcMar-Tc1 220252 220350 33 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Tc1 792092 792187 33 - . . scaffold354 GLEAN mRNA 789292 794805 0.742842 - . ID=CGI_10025738; scaffold210 WUBlastX LTR_Gypsy 278621 278818 169 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 132531 133034 209 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 133027 133296 133 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 132385 132441 23 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_TcMar-Marin 88246 88533 183 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 376174 377094 186 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_RTE-X 252432 252938 54 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_RTE-X 132550 132840 78 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 136347 136538 32 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Ngaro 313534 314247 403 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_L1-Tx1 81083 81535 244 + . . scaffold597 GLEAN mRNA 78607 89731 0.999999 - . ID=CGI_10004930; scaffold597 WUBlastX LINE_L1-Tx1 81547 82131 117 + . . scaffold597 GLEAN mRNA 78607 89731 0.999999 - . ID=CGI_10004930; scaffold457 WUBlastX LINE_L1-Tx1 216851 217981 194 + . . scaffold457 GLEAN mRNA 213050 222173 0.400336 - . ID=CGI_10014534; scaffold38130 WUBlastX DNA_Maverick 28724 29824 372 - . . scaffold38130 GLEAN mRNA 25137 30326 0.998369 - . ID=CGI_10002636; scaffold1605 WUBlastX LINE_L1-Tx1 829414 829629 23 + . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX DNA_hAT-hATw 47790 48476 102 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-BovB 33052 33117 73 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-BovB 33165 33368 210 + . . . . . -1 -1 -1 . . . scaffold1501 WUBlastX DNA_hAT-Tip100 6280 6921 134 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 153235 153306 61 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 381126 381224 78 + . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LINE_RTE-X 55205 55285 43 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 311883 312014 65 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold582 WUBlastX LTR_Gypsy 38661 38735 26 - . . . . . -1 -1 -1 . . . scaffold37672 WUBlastX LINE_L1-Tx1 13617 14708 116 + . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX LINE_L1 9978 10391 150 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 404975 405370 114 + . . . . . -1 -1 -1 . . . scaffold40264 WUBlastX LINE_Proto2 51354 52400 157 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold1132 WUBlastX LINE_RTE-X 421649 421987 61 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_RTE-X 423175 423465 194 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold121 WUBlastX LINE_L1-Tx1 338843 339175 56 - . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_CR1-L2 224913 225119 116 + . . . . . -1 -1 -1 . . . scaffold1429 WUBlastX DNA_Kolobok-IS4 15455 15862 27 + . . scaffold1429 GLEAN mRNA 13458 17611 0.727726 + . ID=CGI_10001355; scaffold9 WUBlastX LINE_RTE-X 146186 146509 34 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LINE_RTE-X 147339 147737 162 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_CR1-L2 122727 124616 208 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_CR1 330080 330841 271 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_L2 11876 12616 122 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_L2 12642 13301 234 - . . . . . -1 -1 -1 . . . scaffold1242 WUBlastX LINE_RTE-BovB 1644 1982 132 - . . . . . -1 -1 -1 . . . scaffold1242 WUBlastX LINE_RTE-BovB 2049 2174 79 - . . . . . -1 -1 -1 . . . scaffold1242 WUBlastX LINE_RTE-BovB 2284 2493 97 - . . . . . -1 -1 -1 . . . scaffold1242 WUBlastX LINE_RTE-BovB 2499 2885 149 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-BovB 18856 19038 27 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX DNA_Academ 25523 26266 332 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold123 WUBlastX RC_Helitron 143682 144479 437 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 280610 280651 21 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Ngaro 544548 545492 365 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold647 WUBlastX LTR_Gypsy 161372 162187 40 - . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LINE_RTE-X 469075 470724 383 - . . . . . -1 -1 -1 . . . scaffold34572 WUBlastX DNA_TcMar-Tc1 16138 17151 406 - . . scaffold34572 GLEAN mRNA 9523 18095 0.999909 - . ID=CGI_10001316; scaffold1603 WUBlastX LTR_Pao 332076 332528 170 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1009 WUBlastX LINE_RTE-BovB 790992 791117 81 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 791156 791476 224 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_R2-Hero 397258 397995 373 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX DNA_Harbinger 148373 148612 55 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Harbinger 854192 854431 55 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 707080 708645 398 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX DNA_TcMar-Tc1 673526 674335 482 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold1148 WUBlastX DNA_TcMar-Tc1 160710 161027 76 - . . scaffold1148 GLEAN mRNA 158300 165919 0.858513 + . ID=CGI_10008249; scaffold1148 WUBlastX DNA_TcMar-Tc1 161051 161644 218 - . . scaffold1148 GLEAN mRNA 158300 165919 0.858513 + . ID=CGI_10008249; C32536 WUBlastX LINE_RTE-X 4324 4992 114 - . . C32536 GLEAN mRNA 3574 9269 0.999661 - . ID=CGI_10000910; scaffold38854 WUBlastX LTR_Gypsy 35956 36321 208 + . . . . . -1 -1 -1 . . . scaffold38448 WUBlastX LINE_Proto2 15421 18138 326 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-X 196372 197175 376 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LTR_Ngaro 86789 87931 410 - . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX DNA_TcMar-Tc1 99729 100286 300 - . . scaffold1447 GLEAN mRNA 98553 105907 0.92535 - . ID=CGI_10013817; scaffold1447 WUBlastX DNA_TcMar-Tc1 100285 100683 42 - . . scaffold1447 GLEAN mRNA 98553 105907 0.92535 - . ID=CGI_10013817; scaffold157 WUBlastX LTR_Gypsy 646816 647280 203 + . . . . . -1 -1 -1 . . . scaffold118 WUBlastX LINE_RTE-X 21757 22053 195 - . . . . . -1 -1 -1 . . . scaffold118 WUBlastX LINE_RTE-X 22061 22684 293 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 597891 598076 171 + . . . . . -1 -1 -1 . . . C31144 WUBlastX LTR_Gypsy 7802 8908 561 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 346835 347248 24 - . . scaffold4 GLEAN mRNA 343942 353209 0.759631 + . ID=CGI_10021174; scaffold338 WUBlastX DNA_Academ 258933 259820 434 + . . scaffold338 GLEAN mRNA 258409 258933 0.999999 + . ID=CGI_10011189; scaffold338 WUBlastX DNA_Academ 258933 259820 434 + . . scaffold338 GLEAN mRNA 259329 259880 0.557893 + . ID=CGI_10011190; scaffold42618 WUBlastX LTR_Gypsy 94309 94851 148 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_DIRS 37017 37598 268 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_L1 26382 26696 63 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 26382 26696 63 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold39642 WUBlastX DNA_Maverick 5165 5218 25 + . . . . . -1 -1 -1 . . . scaffold1871 WUBlastX LINE_RTE-X 140050 141630 392 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX DNA_TcMar-Tc1 170805 171563 391 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_TcMar-Tc1 266219 267142 387 - . . scaffold461 GLEAN mRNA 255647 275095 0.999942 - . ID=CGI_10020107; scaffold1843 WUBlastX LTR_Pao 96052 96987 235 + . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_CR1-L2 692 1105 88 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Gypsy 132571 133863 542 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_L2 225669 226391 428 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_L2 226417 226698 80 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_IS4EU 338586 338960 36 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_IS4EU 339374 340357 435 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1-Tx1 170760 171128 47 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold41648 WUBlastX DNA_Maverick 88619 88855 108 - . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 56451 57197 258 - . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 57649 57765 101 - . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 58036 58164 109 - . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 58152 58472 133 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1-Tx1 214403 215398 197 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LTR_Gypsy 90049 90102 23 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_TcMar-Marin 333256 333660 233 + . . . . . -1 -1 -1 . . . scaffold50 WUBlastX DNA_TcMar-Tc1 176448 177155 315 + . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX DNA_TcMar-Tc1 340421 340918 318 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX DNA_Maverick 109465 109620 66 + . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; C30072 WUBlastX LINE_RTE-X 5787 6014 66 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 257119 258042 380 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_L2 443483 444172 257 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_L2 445367 446053 243 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 380552 381463 184 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_IS4EU 661995 662222 40 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-BovB 715568 716179 602 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold42604 WUBlastX LTR_DIRS 136661 137614 545 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1-Tx1 84062 84538 62 - . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX DNA_IS4EU 58988 60124 549 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_L1 2930 3376 267 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 368672 370162 408 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_CR1-L2 44951 45841 478 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy-Cigr 503321 505012 358 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LTR_Gypsy 271463 271543 21 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_Penelope 43075 44112 372 - . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LTR_Gypsy 14224 14265 21 - . . . . . -1 -1 -1 . . . C29558 WUBlastX LINE_RTE-X 2224 3729 505 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 78558 79157 318 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_L2 430974 431594 430 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; C26936 WUBlastX LTR_Gypsy 1613 2275 350 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold1016 WUBlastX LINE_RTE-X 148965 150188 354 - . . . . . -1 -1 -1 . . . scaffold38576 WUBlastX LINE_L2 25649 25918 132 + . . . . . -1 -1 -1 . . . scaffold38576 WUBlastX LINE_L2 25917 26432 361 + . . . . . -1 -1 -1 . . . scaffold38576 WUBlastX LINE_L2 26432 26848 131 + . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX DNA_hAT 12507 12635 86 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold286 WUBlastX LTR_Ngaro 28365 28706 258 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1-Tx1 85627 85995 101 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_L2 560898 561773 503 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_L2 561799 562128 107 + . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX LINE_CR1-L2 461145 461708 418 + . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX LINE_CR1-L2 462526 463494 105 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_Sola 178954 180357 561 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 12751 12819 21 - . . . . . -1 -1 -1 . . . scaffold37430 WUBlastX LTR_Pao 38082 38456 141 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 38473 40479 463 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold1849 WUBlastX LTR_Gypsy 133753 134088 234 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold1160 WUBlastX LTR_Gypsy 160310 160447 21 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 160606 160890 204 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 160869 161372 324 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Maverick 352167 352520 163 - . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1-Tx1 110556 111278 329 + . . . . . -1 -1 -1 . . . scaffold39754 WUBlastX LTR_Pao 12858 14069 700 + . . scaffold39754 GLEAN mRNA 11997 16678 0.584385 + . ID=CGI_10003598; scaffold40492 WUBlastX LINE_CR1-L2 90586 91767 377 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L2 733543 734748 560 + . . . . . -1 -1 -1 . . . scaffold439 WUBlastX LTR_Gypsy 31133 32188 187 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LTR_Gypsy 132974 133759 505 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold298 WUBlastX LTR_Ngaro 402291 402530 81 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 39550 39705 74 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 39692 40195 91 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 40248 40994 236 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy-Troyk 529150 529368 65 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Ngaro 27445 28056 353 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy-Gmr1 563787 563837 20 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX RC_Helitron 5403 6947 200 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold658 WUBlastX LINE_L1 225503 226126 272 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX LTR_Gypsy 59709 60398 394 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX LTR_Gypsy 60328 60774 103 - . . . . . -1 -1 -1 . . . scaffold788 WUBlastX LINE_L1 36207 36350 46 - . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX DNA_Zator 44335 44568 75 + . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX DNA_Zator 44550 45623 498 + . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX DNA_Zator 45592 46002 115 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 620632 621081 85 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold90 WUBlastX LTR_Gypsy 137890 138801 802 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold34610 WUBlastX LTR_Gypsy 4 357 39 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LTR_Gypsy 1222 1779 377 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 9392 9706 180 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 10675 10740 23 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-BovB 14388 14735 391 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold1123 WUBlastX LINE_RTE-BovB 14704 15384 494 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold41896 WUBlastX LINE_L2 29515 30369 349 + . . . . . -1 -1 -1 . . . scaffold41896 WUBlastX LINE_L2 30629 30808 109 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LTR_Gypsy 63543 63731 40 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 364819 364971 52 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 365195 365473 118 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 365446 366195 347 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 366189 366299 62 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 366983 367387 186 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1 58693 59199 231 + . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LTR_Ngaro 30978 31523 276 - . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LINE_RTE-X 40680 40856 88 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1 341752 341949 50 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold35640 WUBlastX LINE_CR1 21706 22452 630 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_L1 210764 212110 221 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Ngaro 1181614 1181682 34 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy 306211 307164 36 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 264950 265783 275 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Pao 220930 222450 906 + . . scaffold1448 GLEAN mRNA 205659 222787 0.97529 + . ID=CGI_10011856; scaffold34438 WUBlastX DNA_Helitron 10454 11794 442 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_L1-Tx1 152784 153791 120 - . . scaffold712 GLEAN mRNA 144650 156180 1 + . ID=CGI_10016478; scaffold712 WUBlastX LINE_L1-Tx1 153965 155245 504 - . . scaffold712 GLEAN mRNA 144650 156180 1 + . ID=CGI_10016478; scaffold1521 WUBlastX DNA_hAT-Tip100 2965 3507 185 + . . . . . -1 -1 -1 . . . scaffold41572 WUBlastX LTR_Copia 65688 65879 26 - . . scaffold41572 GLEAN mRNA 65640 78823 0.810505 - . ID=CGI_10005295; scaffold354 WUBlastX LTR_Pao 289930 290157 24 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_hAT-Tip100 282614 282838 65 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_CR1 51521 52066 35 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold41786 WUBlastX DNA_hAT-Tip100 109057 109458 22 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold885 WUBlastX LTR_Copia 925310 926821 47 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LTR_Copia 780894 781784 33 - . . scaffold271 GLEAN mRNA 780567 782249 0.988234 - . ID=CGI_10024495; scaffold459 WUBlastX LINE_CR1-L2 359134 359451 35 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_CR1-L2 126715 126873 45 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_L2 737657 738004 31 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_CR1 52489 52533 24 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold917 WUBlastX LTR_DIRS? 243493 243603 80 - . . . . . -1 -1 -1 . . . scaffold1404 WUBlastX LTR_Ngaro 153842 153946 33 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_DIRS 346079 346174 23 - . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_L2 237121 237249 45 - . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_L2 237351 237482 37 - . . scaffold1815 GLEAN mRNA 237374 237631 0.998748 - . ID=CGI_10010271; scaffold1138 WUBlastX LINE_L2 185523 185960 29 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1214 WUBlastX LTR_Gypsy 383616 384155 53 + . . . . . -1 -1 -1 . . . C27890 WUBlastX LTR_Gypsy 3586 3747 51 - . . . . . -1 -1 -1 . . . C27890 WUBlastX LTR_Gypsy 4536 4637 28 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy-Cigr 78724 79248 63 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LTR_Gypsy 166767 167399 47 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Gypsy 120464 120772 28 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_Harbinger 291153 291353 76 - . . scaffold934 GLEAN mRNA 282815 291724 0.901828 + . ID=CGI_10015447; scaffold1301 WUBlastX DNA_hAT-Charlie 63678 63944 62 - . . scaffold1301 GLEAN mRNA 63902 64216 0.618186 - . ID=CGI_10027703; scaffold186 WUBlastX DNA_Harbinger 16351 16593 49 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Harbinger 197207 197446 36 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX DNA_Harbinger 133579 133767 63 + . . . . . -1 -1 -1 . . . scaffold33462 WUBlastX DNA_hAT-Tip100 1750 1878 82 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX DNA_IS4EU 68962 69186 92 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 471913 472023 46 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1-Tx1 214255 214554 43 - . . scaffold1459 GLEAN mRNA 205018 215216 0.471924 - . ID=CGI_10010114; scaffold36816 WUBlastX LINE_L1-Tx1 18727 18990 70 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_L1 542481 542705 59 + . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LINE_L1 146415 146459 33 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LINE_L1-Tx1 153341 153520 62 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_R2 426688 427233 41 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_TcMar-Marin 656090 656176 51 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062465 60 + . . scaffold168 GLEAN mRNA 1061165 1068516 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062465 60 + . . scaffold168 GLEAN mRNA 1061468 1075146 0.901342 - . ID=CGI_10025627; scaffold1634 WUBlastX DNA_TcMar-Fot1 91308 91637 47 - . . scaffold1634 GLEAN mRNA 89739 98250 0.998588 + . ID=CGI_10005153; scaffold625 WUBlastX LINE_RTE-BovB 164394 164510 44 - . . . . . -1 -1 -1 . . . scaffold372 WUBlastX LINE_Penelope 239802 240089 58 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_NOF 366438 366740 45 - . . scaffold962 GLEAN mRNA 363407 372886 0.374498 - . ID=CGI_10027644; scaffold419 WUBlastX LTR_ERV1 1273790 1274203 23 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold419 WUBlastX LTR_ERV1 1273790 1274203 23 - . . scaffold419 GLEAN mRNA 1273694 1274755 0.481511 - . ID=CGI_10028403; scaffold1874 WUBlastX LTR_ERV1 141837 142202 24 + . . scaffold1874 GLEAN mRNA 141606 143108 0.999999 + . ID=CGI_10011926; scaffold364 WUBlastX DNA_MuDR 345205 345411 35 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_MuDR 345604 345843 47 - . . . . . -1 -1 -1 . . . scaffold465 WUBlastX LINE_Penelope 83846 83977 31 - . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_Proto2 7126 7170 20 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_PiggyBac 391433 391675 32 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-X 234577 234759 37 - . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LINE_RTE-BovB 304262 304939 38 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold38116 WUBlastX LINE_RTE-X 1 162 37 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 422183 422266 62 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 422268 422336 31 - . . . . . -1 -1 -1 . . . scaffold43522 WUBlastX LINE_RTE-X 92722 92985 31 + . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold709 WUBlastX LINE_RTE-X 315519 315611 24 + . . scaffold709 GLEAN mRNA 310064 322384 0.999026 + . ID=CGI_10020089; scaffold354 WUBlastX LINE_RTE-X 72893 73009 35 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold322 WUBlastX LINE_RTE-X 40135 40446 49 + . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-X 179598 179645 21 - . . scaffold552 GLEAN mRNA 158159 180316 1 + . ID=CGI_10009325; scaffold43446 WUBlastX LINE_RTE-X 188416 188535 24 + . . scaffold43446 GLEAN mRNA 175111 204349 0.996568 - . ID=CGI_10010404; scaffold569 WUBlastX DNA_TcMar-Marin 173681 173893 73 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX DNA_Sola 497000 497113 54 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX DNA_Sola 497978 498076 32 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_RTE-X 206848 207048 57 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 732853 733086 39 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1-L2 297015 297113 25 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Caulimoviru 87104 87310 20 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Pao 48232 48270 27 + . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX LINE_L1 9776 9949 76 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Ac 160782 160931 21 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX DNA_PiggyBac 196234 196365 63 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_CR1 1300328 1300849 34 + . . scaffold77 GLEAN mRNA 1293095 1309496 0.999074 - . ID=CGI_10028031; scaffold1199 WUBlastX LTR_Gypsy 101536 101751 80 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 136219 136482 99 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 164358 164564 50 + . . scaffold1081 GLEAN mRNA 151167 168373 0.603491 + . ID=CGI_10007686; scaffold424 WUBlastX LTR_Gypsy-Cigr 105266 105625 65 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_DIRS 1609623 1609901 56 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Ngaro 220733 220870 63 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_Harbinger 275067 275342 93 + . . scaffold976 GLEAN mRNA 266197 282153 0.702349 + . ID=CGI_10014014; scaffold1094 WUBlastX LTR_Gypsy 552136 552423 21 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_IS4EU 278514 278693 62 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 278514 278693 62 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 277077 277199 39 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 277077 277199 39 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 278100 278204 45 + . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 278100 278204 45 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1785 WUBlastX DNA_hAT-Ac 927511 927960 67 - . . scaffold1785 GLEAN mRNA 909020 927662 0.54223 - . ID=CGI_10024406; scaffold1213 WUBlastX LINE_L1-Tx1 102953 103111 28 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_L1-Tx1 128452 129006 37 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Kolobok 492708 492878 91 + . . scaffold267 GLEAN mRNA 492434 492911 1 + . ID=CGI_10018313; scaffold267 WUBlastX DNA_Kolobok 493177 493263 20 + . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LINE_Penelope 123188 123451 84 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_Penelope 127639 127881 20 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; C33378 WUBlastX DNA_TcMar-Fot1 2099 2326 29 - . . . . . -1 -1 -1 . . . scaffold718 WUBlastX LINE_L2 16143 16373 60 + . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LTR_Ngaro 227704 227784 23 + . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LTR_Ngaro 228980 229057 25 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LINE_L1-Tx1 657933 658400 56 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_Kolobok-Hyd 213343 213768 43 + . . scaffold448 GLEAN mRNA 213388 215689 0.999613 + . ID=CGI_10024936; scaffold42448 WUBlastX LINE_L1-Tx1 24616 24684 20 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 87187 87240 34 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LINE_RTE-X 169271 169414 53 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LINE_RTE-X 169425 169481 39 + . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_RTE-X 92866 93105 62 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 328959 329108 38 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_RTE-BovB 3756 3839 67 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_PiggyBac 390933 391283 66 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Tc2 360327 360635 81 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LTR_Gypsy 344813 345169 58 - . . scaffold378 GLEAN mRNA 344618 345241 0.999372 - . ID=CGI_10017652; scaffold1701 WUBlastX LTR_Gypsy 40997 41407 51 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 940149 940244 21 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_L1-Tx1 168646 168936 71 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 385338 385754 49 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Zator 842746 842949 76 - . . scaffold271 GLEAN mRNA 809860 849502 0.997113 - . ID=CGI_10024500; scaffold271 WUBlastX DNA_Zator 842746 842949 76 - . . scaffold271 GLEAN mRNA 833226 854564 0.51616 + . ID=CGI_10024501; scaffold695 WUBlastX DNA_TcMar-M44 367092 367328 53 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_RTE-BovB 268913 269038 23 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold237 WUBlastX LTR_ERV1 545320 545703 90 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_CR1-L2 350299 350385 51 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_CR1 208180 208356 47 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Crypton 815029 815424 63 + . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LTR_Gypsy-Cigr 154987 155445 70 - . . scaffold1625 GLEAN mRNA 154393 155445 0.999064 - . ID=CGI_10007531; scaffold1686 WUBlastX LTR_Gypsy-Cigr 29957 30634 41 - . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_R2 442020 442397 72 - . . scaffold381 GLEAN mRNA 430162 460289 0.970742 - . ID=CGI_10017566; scaffold90 WUBlastX LTR_Gypsy 213110 213298 96 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX DNA_hAT-Tip100 201670 201957 97 + . . scaffold660 GLEAN mRNA 201436 201984 0.999661 + . ID=CGI_10013753; scaffold559 WUBlastX DNA_Harbinger 14487 14816 57 + . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX DNA_Harbinger 16096 16308 88 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 1455733 1456074 52 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LTR_Gypsy 153518 153796 27 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold596 WUBlastX DNA_Harbinger 1580 1762 71 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_IS4EU 467309 467533 62 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok-Hyd 394336 394725 23 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold502 WUBlastX LINE_L1 248304 248420 27 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_Penelope 804582 804887 60 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_Penelope 329315 329641 64 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_Penelope 1162444 1162623 42 - . . . . . -1 -1 -1 . . . scaffold1163 WUBlastX LINE_RTE-BovB 200150 200284 28 + . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold237 WUBlastX LINE_Penelope 325480 325806 62 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_PiggyBac 227311 227697 62 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_PiggyBac 192139 192321 95 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX DNA_Maverick 342701 342955 49 + . . . . . -1 -1 -1 . . . scaffold38898 WUBlastX DNA_Maverick 24027 24251 59 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Gypsy 22776 22988 102 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX DNA_MuDR 271625 271906 55 - . . scaffold5 GLEAN mRNA 271613 271948 0.999999 - . ID=CGI_10012932; scaffold43184 WUBlastX LINE_RTE-X 5360 5644 34 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 134153 134479 70 + . . scaffold313 GLEAN mRNA 134319 135998 0.83601 - . ID=CGI_10026584; scaffold678 WUBlastX LINE_RTE-X 1100336 1100590 75 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 626488 626859 48 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_RTE-X 68792 69013 80 - . . . . . -1 -1 -1 . . . scaffold793 WUBlastX LINE_RTE-X 133191 133664 63 + . . . . . -1 -1 -1 . . . scaffold40564 WUBlastX LINE_RTE-X 29429 29560 51 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 546984 547175 69 + . . scaffold1599 GLEAN mRNA 541949 554448 0.648153 + . ID=CGI_10027151; scaffold1700 WUBlastX LINE_L1-Tx1 109172 109441 87 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L1-Tx1 589212 589262 20 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_L1-Tx1 209506 209709 35 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LINE_L1-Tx1 25634 26200 62 + . . scaffold520 GLEAN mRNA 25646 27014 0.984983 + . ID=CGI_10010951; scaffold773 WUBlastX LINE_L2 116487 116621 64 + . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LINE_CR1-L2 19685 20080 72 + . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_L1 44197 44289 38 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1 1303497 1303955 64 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX DNA_hAT-Tip100 148756 149016 75 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 134724 134981 114 - . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy-Cigr 43744 43938 71 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Ngaro 412256 412807 42 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Ngaro 251217 251711 26 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold678 WUBlastX DNA_Harbinger 990605 990961 45 - . . scaffold678 GLEAN mRNA 990593 990979 0.955912 - . ID=CGI_10026391; scaffold817 WUBlastX LTR_Gypsy 167696 168010 25 + . . . . . -1 -1 -1 . . . scaffold36598 WUBlastX DNA_hAT-Blackja 34006 34314 77 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_IS4EU 156696 156875 71 - . . scaffold513 GLEAN mRNA 149609 156857 0.819622 - . ID=CGI_10022138; scaffold513 WUBlastX DNA_IS4EU 157525 157662 21 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 645497 645601 35 - . . . . . -1 -1 -1 . . . scaffold42740 WUBlastX DNA_IS4EU 8476 8649 72 - . . . . . -1 -1 -1 . . . scaffold42740 WUBlastX DNA_IS4EU 9199 9354 27 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_Penelope 480369 480980 80 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_Penelope 280227 280313 36 - . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX DNA_MuDR 31304 31528 112 - . . scaffold1650 GLEAN mRNA 31012 31380 0.991548 - . ID=CGI_10017769; scaffold1209 WUBlastX DNA_MuDR 121133 121561 45 - . . scaffold1209 GLEAN mRNA 106847 123923 0.38603 - . ID=CGI_10007967; scaffold1209 WUBlastX DNA_MuDR 121891 122082 52 - . . scaffold1209 GLEAN mRNA 106847 123923 0.38603 - . ID=CGI_10007967; scaffold169 WUBlastX LINE_L2 658038 658430 72 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LTR_Ngaro 589564 589653 30 - . . scaffold149 GLEAN mRNA 584854 590268 0.922469 + . ID=CGI_10025308; scaffold149 WUBlastX LTR_Ngaro 589647 589880 27 - . . scaffold149 GLEAN mRNA 584854 590268 0.922469 + . ID=CGI_10025308; C31346 WUBlastX DNA_TcMar-Marin 4465 4683 58 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L1 112291 112986 92 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 395335 395550 46 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 396014 396109 43 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 646379 646465 23 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold370 WUBlastX LINE_RTE-X 213798 214058 59 + . . scaffold370 GLEAN mRNA 206452 214758 0.593383 + . ID=CGI_10025528; scaffold370 WUBlastX LINE_RTE-X 213798 214058 59 + . . scaffold370 GLEAN mRNA 209445 220615 0.499656 - . ID=CGI_10025529; scaffold490 WUBlastX LINE_RTE-X 70163 70486 66 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 360822 360977 38 - . . . . . -1 -1 -1 . . . scaffold1460 WUBlastX LINE_RTE-BovB 4344 4457 34 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 261833 262102 84 - . . . . . -1 -1 -1 . . . scaffold1452 WUBlastX DNA_TcMar-Tc1 128816 129013 33 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX DNA_Sola 158866 158928 26 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold575 WUBlastX DNA_Sola 159430 159567 32 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold1512 WUBlastX LINE_L1-Tx1 76406 76648 56 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 477875 478441 78 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_TcMar-Tc1 273354 273590 50 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_hAT-Tip100 37917 38159 102 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_TcMar-ISRm1 274093 274281 119 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_TcMar-Tc1 1062911 1063264 115 + . . scaffold168 GLEAN mRNA 1061165 1068516 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062911 1063264 115 + . . scaffold168 GLEAN mRNA 1061468 1075146 0.901342 - . ID=CGI_10025627; scaffold1711 WUBlastX LINE_L2 16230 17393 31 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_CR1 591368 591943 45 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_CR1-L2 51028 51108 62 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold1350 WUBlastX LTR_Ngaro 109950 110333 22 - . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold41816 WUBlastX LTR_Ngaro 24995 25210 50 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 25246 25353 23 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold1894 WUBlastX LTR_Gypsy-Cigr 206227 206697 59 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy 198330 198458 75 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 339343 339486 24 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold1388 WUBlastX LTR_Gypsy 120694 121116 100 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 932663 932860 85 - . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX DNA_IS4EU 22383 22982 46 + . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_R2-Hero 123225 123443 93 + . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold1100 WUBlastX LTR_Gypsy 104343 104699 70 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Harbinger 418123 418389 33 - . . scaffold313 GLEAN mRNA 405100 422748 0.675929 + . ID=CGI_10026603; scaffold313 WUBlastX DNA_Harbinger 418418 418702 56 - . . scaffold313 GLEAN mRNA 405100 422748 0.675929 + . ID=CGI_10026603; scaffold756 WUBlastX LTR_Gypsy 260114 260440 78 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 386917 387366 92 - . . . . . -1 -1 -1 . . . C26240 WUBlastX LINE_Jockey 1726 1806 21 - . . . . . -1 -1 -1 . . . scaffold42904 WUBlastX DNA_Kolobok 101959 102522 77 + . . scaffold42904 GLEAN mRNA 87880 118208 0.944676 - . ID=CGI_10008103; scaffold1883 WUBlastX LINE_L1-Tx1 87937 88086 25 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L1 23227 23454 106 + . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX DNA_TcMar-Fot1 97930 98412 85 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX DNA_NOF? 182239 182523 81 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Penelope 10922 11206 97 - . . . . . -1 -1 -1 . . . scaffold41380 WUBlastX LINE_RTE-BovB 67289 67477 66 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold1362 WUBlastX LINE_RTE-X 426652 426798 108 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 205658 205924 66 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold280 WUBlastX DNA_Sola 885172 885453 23 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 622958 623368 90 + . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_L1-Tx1 31715 32041 73 - . . . . . -1 -1 -1 . . . scaffold35438 WUBlastX LINE_L1-Tx1 13738 14004 112 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold43340 WUBlastX LINE_L1-Tx1 239315 239626 46 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_CR1 292341 292538 37 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_CR1-L2 1680216 1680497 61 - . . . . . -1 -1 -1 . . . scaffold40114 WUBlastX LINE_CR1-L2 21601 21744 57 + . . scaffold40114 GLEAN mRNA 20826 33927 0.999548 + . ID=CGI_10003919; scaffold100 WUBlastX LINE_CR1-L2 230140 230253 96 + . . . . . -1 -1 -1 . . . scaffold910 WUBlastX LINE_CR1-L2 21388 21657 91 - . . . . . -1 -1 -1 . . . scaffold41388 WUBlastX LINE_CR1-L2 61047 61343 81 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_CR1-L2 79702 80058 109 + . . scaffold442 GLEAN mRNA 79786 80136 0.999397 + . ID=CGI_10005515; scaffold1599 WUBlastX LINE_CR1-L2 1322892 1323287 115 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_CR1 23120 23155 20 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Pao 352431 352763 136 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold99 WUBlastX LTR_Ngaro 453229 453549 111 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 28032 28358 63 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold43136 WUBlastX DNA_Harbinger 3623 3883 108 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LINE_Penelope 34133 34504 68 - . . scaffold274 GLEAN mRNA 31807 34983 0.990803 + . ID=CGI_10017008; scaffold1622 WUBlastX LINE_Penelope 2525 3037 89 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_Penelope 220992 221297 40 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX DNA_TcMar-Marin 448617 448751 57 + . . scaffold1682 GLEAN mRNA 447464 452325 1 - . ID=CGI_10016060; scaffold1682 WUBlastX DNA_TcMar-Marin 448820 449266 33 + . . scaffold1682 GLEAN mRNA 447464 452325 1 - . ID=CGI_10016060; scaffold43146 WUBlastX LINE_L2 16587 16661 22 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Ngaro 178455 178829 108 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1 113664 114170 105 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 27853 28038 85 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold606 WUBlastX LINE_L1 17612 17713 40 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_RTE-X 54355 54564 50 + . . scaffold113 GLEAN mRNA 53720 57757 0.859957 + . ID=CGI_10021283; scaffold1014 WUBlastX LINE_RTE-X 292140 292361 121 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_RTE-X 413547 414107 33 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_RTE-X 414121 414378 25 - . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_RTE-X 297109 297633 52 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_DIRS 449772 450419 48 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Ngaro 42840 43340 73 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LTR_Ngaro 83106 83552 88 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_L1-Tx1 15768 16208 73 + . . . . . -1 -1 -1 . . . scaffold1873 WUBlastX LINE_L1-Tx1 64736 64792 28 + . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1673 WUBlastX LTR_Gypsy 283084 283176 55 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX DNA_TcMar-Tc1 164760 164939 46 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX DNA_TcMar-Tc1 164935 165282 55 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Pao 742 774 20 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_TcMar-Tc1 87402 87644 100 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold784 WUBlastX LINE_L2 434641 434847 103 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_CR1 172944 173333 129 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L2 15324 15875 115 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold41228 WUBlastX LINE_L2 15957 16511 135 + . . scaffold41228 GLEAN mRNA 12628 43602 0.144447 - . ID=CGI_10004861; scaffold115 WUBlastX LTR_DIRS 377030 377371 85 + . . . . . -1 -1 -1 . . . scaffold41034 WUBlastX LTR_DIRS 58402 58713 67 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold489 WUBlastX LTR_Gypsy 590865 591755 82 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LTR_Gypsy 21176 22036 108 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 328181 328246 24 - . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LTR_Gypsy 208886 209152 43 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LTR_Gypsy 209983 210147 100 + . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold43314 WUBlastX DNA_hAT-hATw 156846 156974 27 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_TcMar-Marin 270208 270438 40 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX DNA_IS4EU 141425 141946 120 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1 350158 350361 50 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_L1-Tx1 42978 43334 93 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_L1 293318 293725 75 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L1 550252 550455 130 - . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_L1 79853 80047 47 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1 385482 385754 97 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L1 516618 516878 85 + . . scaffold591 GLEAN mRNA 499941 525575 0.696977 - . ID=CGI_10027572; scaffold527 WUBlastX LINE_L1 308607 309176 79 - . . . . . -1 -1 -1 . . . C32276 WUBlastX LTR_ERV1 9452 9691 27 - . . C32276 GLEAN mRNA 2612 10129 0.932261 - . ID=CGI_10000874; scaffold35796 WUBlastX LINE_Penelope 361 630 73 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_RTE-X 18069 18356 93 - . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold42850 WUBlastX LINE_RTE-X 10738 11187 73 + . . scaffold42850 GLEAN mRNA 3662 13171 0.999996 + . ID=CGI_10007918; scaffold1154 WUBlastX LINE_RTE-X 1033077 1033415 80 + . . scaffold1154 GLEAN mRNA 1031436 1038206 0.969571 + . ID=CGI_10026203; scaffold37068 WUBlastX LINE_RTE-X 1409 1612 82 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-BovB 53148 53627 75 + . . . . . -1 -1 -1 . . . scaffold1460 WUBlastX LINE_RTE-BovB 4317 4466 29 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX DNA_Sola 272495 273016 124 + . . scaffold82 GLEAN mRNA 272167 273067 0.994575 + . ID=CGI_10025252; scaffold82 WUBlastX LINE_RTE-X 1010319 1010801 93 - . . . . . -1 -1 -1 . . . scaffold644 WUBlastX LINE_L1-Tx1 84693 84803 63 - . . . . . -1 -1 -1 . . . scaffold644 WUBlastX LINE_L1-Tx1 84841 84900 40 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LINE_CR1-L2 122250 122612 131 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_L2 176587 177132 93 + . . scaffold1350 GLEAN mRNA 175145 193937 0.999592 - . ID=CGI_10017302; scaffold54 WUBlastX LINE_CR1 637381 637578 154 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 10575 10856 41 - . . . . . -1 -1 -1 . . . scaffold1742 WUBlastX LTR_Copia 248291 248800 113 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 299882 300568 57 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LTR_Gypsy 33923 34084 77 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_hAT-Tip100 26073 26390 87 - . . scaffold40246 GLEAN mRNA 25998 27045 0.997233 - . ID=CGI_10003986; scaffold40246 WUBlastX DNA_hAT-Tip100 26506 26838 32 - . . scaffold40246 GLEAN mRNA 25998 27045 0.997233 - . ID=CGI_10003986; scaffold1700 WUBlastX LTR_ERV1 53583 54344 118 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_L2 49375 49452 21 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LTR_DIRS 13029 13421 112 - . . scaffold1650 GLEAN mRNA 11438 15410 0.647114 - . ID=CGI_10017768; scaffold43146 WUBlastX LTR_Ngaro 62949 63335 76 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_Ngaro 647907 648212 24 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold354 WUBlastX LTR_Ngaro 746636 747445 54 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Ngaro 89803 89943 41 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold719 WUBlastX LTR_Ngaro 221527 221853 82 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Gypsy 258981 260000 85 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 139932 140594 94 + . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX DNA_IS4EU 46405 46662 102 - . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX DNA_Harbinger 81478 81765 123 - . . . . . -1 -1 -1 . . . scaffold34894 WUBlastX DNA_Harbinger 1417 1641 155 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Helitron 117301 117813 155 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 459242 459559 118 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 713142 713486 99 - . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_L1-Tx1 142317 142889 96 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-BovB 554126 554581 116 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LINE_RTE-BovB 226761 226835 55 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LINE_RTE-BovB 226855 227013 69 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 1280382 1280534 28 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold1283 WUBlastX LINE_RTE-X 51645 51986 52 + . . scaffold1283 GLEAN mRNA 50365 61759 0.999936 - . ID=CGI_10011785; scaffold1736 WUBlastX LINE_RTE-X 470041 470241 108 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_RTE-X 470246 470308 41 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_RTE-X 408968 409333 76 - . . . . . -1 -1 -1 . . . scaffold41806 WUBlastX LINE_RTE-X 65263 65532 116 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Ngaro 376877 377047 21 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Ngaro 377290 377487 89 + . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_L1-Tx1 110248 110682 66 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_TcMar-Tc2 190258 190956 111 - . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX DNA_TcMar-Tc1 111901 112155 59 + . . . . . -1 -1 -1 . . . scaffold42556 WUBlastX DNA_hAT 98030 98758 68 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_L2 144114 144413 141 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_L2 50585 51085 65 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 51111 51200 21 - . . scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold44008 WUBlastX LINE_CR1-L2 179642 179911 100 - . . scaffold44008 GLEAN mRNA 176056 181412 0.761228 - . ID=CGI_10015290; scaffold1301 WUBlastX LTR_Ngaro 419999 420088 30 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX DNA_Crypton 102177 102578 120 + . . . . . -1 -1 -1 . . . scaffold823 WUBlastX LTR_Ngaro 39786 39968 74 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1041569 1042363 35 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX DNA_Harbinger 546752 546865 21 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Harbinger 424092 424382 127 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_Harbinger 261139 261429 144 - . . . . . -1 -1 -1 . . . scaffold850 WUBlastX LTR_DIRS 77569 77901 121 - . . . . . -1 -1 -1 . . . scaffold532 WUBlastX LINE_L1 255967 256308 145 + . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1 144637 144861 54 + . . . . . -1 -1 -1 . . . scaffold43772 WUBlastX DNA_Kolobok 306174 306404 25 + . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LTR_Ngaro 21096 21473 140 - . . scaffold1854 GLEAN mRNA 10780 21821 0.727692 - . ID=CGI_10004409; scaffold265 WUBlastX LTR_Ngaro 69374 69778 151 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold413 WUBlastX LTR_Ngaro 143602 143979 142 - . . scaffold413 GLEAN mRNA 138311 158515 0.482983 + . ID=CGI_10022796; scaffold852 WUBlastX DNA_Merlin 11814 12242 128 + . . . . . -1 -1 -1 . . . scaffold1886 WUBlastX DNA_PiggyBac 176903 177007 59 - . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_RTE-BovB 138217 138411 129 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_RTE-RTE 276114 276443 44 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1-Tx1 572693 572788 22 - . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_CR1-L2 114028 114084 21 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold1100 WUBlastX LTR_Gypsy-Cigr 104710 104925 84 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 317975 318109 28 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Ngaro 62934 63173 138 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX DNA_Crypton 369794 369868 26 + . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LTR_DIRS 68880 68993 28 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Ngaro 42918 43271 131 - . . . . . -1 -1 -1 . . . scaffold180 WUBlastX LTR_Gypsy 72251 72730 145 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_hAT-Ac 238702 238800 57 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX DNA_IS4EU 41398 41796 116 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_Penelope 38872 39171 130 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Kolobok 898244 898411 65 - . . . . . -1 -1 -1 . . . scaffold40938 WUBlastX LINE_L1 5548 5784 26 - . . . . . -1 -1 -1 . . . scaffold36278 WUBlastX DNA_PiggyBac 26207 26746 127 - . . scaffold36278 GLEAN mRNA 22300 32002 0.651135 - . ID=CGI_10001848; scaffold1583 WUBlastX LINE_RTE-X 97640 98215 60 + . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LINE_RTE-X 57949 58347 125 + . . scaffold41884 GLEAN mRNA 50798 64593 0.351321 + . ID=CGI_10005780; scaffold203 WUBlastX LINE_RTE-X 628107 628337 30 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold1599 WUBlastX LINE_RTE-X 811840 812007 88 + . . . . . -1 -1 -1 . . . C26394 WUBlastX LINE_L1-Tx1 3444 3875 94 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_Zorro 94508 94573 20 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_Gypsy 72692 74383 939 + . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LTR_Pao 76737 77306 48 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold1327 WUBlastX LTR_Gypsy 217304 217540 188 - . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 6755 6898 57 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 2483 2956 86 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 4213 4500 72 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_CR1-L2 422973 423155 129 + . . . . . -1 -1 -1 . . . C27146 WUBlastX LTR_Gypsy 1000 1665 420 - . . . . . -1 -1 -1 . . . C27146 WUBlastX LTR_Gypsy 1659 2471 526 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 115005 115328 94 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 115532 116548 508 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 567671 568333 69 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 567671 568333 69 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold546 WUBlastX LINE_RTE-X 352590 353972 558 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-X 354107 354574 68 - . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy 47660 48019 73 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_CR1-L2 947 1723 97 + . . . . . -1 -1 -1 . . . C34174 WUBlastX LINE_CR1 14686 14922 87 - . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 30278 30640 115 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LTR_Ngaro 381396 381995 92 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_hAT-Ac 46677 47051 187 + . . scaffold986 GLEAN mRNA 30562 55582 0.15443 + . ID=CGI_10009957; scaffold43182 WUBlastX DNA_Kolobok 148651 148824 76 - . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold150 WUBlastX LINE_L1 541072 541869 89 + . . . . . -1 -1 -1 . . . C29244 WUBlastX DNA_TcMar-Marin 118 501 72 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Ngaro 45680 46087 141 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 602925 603311 110 + . . . . . -1 -1 -1 . . . scaffold35272 WUBlastX LINE_RTE-X 7319 7606 98 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_RTE-X 1 594 116 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_RTE-BovB 94051 94428 136 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_L1-Tx1 416820 417167 163 + . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX DNA_hAT-Tip100 29069 29752 211 - . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LTR_Pao 175077 176183 1120 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold632 WUBlastX LINE_CR1-L2 511376 511618 59 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; C29558 WUBlastX LTR_Gypsy-Cigr 5009 5101 49 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_hAT-Tip100 261068 261679 330 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_CR1 428607 429425 85 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_CR1-L2 1216907 1217275 93 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_L2 18 737 81 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_DIRS 207255 207770 113 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Pao 66571 66681 21 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold70 WUBlastX LTR_Ngaro 294894 295904 69 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_DIRS 768023 768664 120 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 380760 380927 32 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_DIRS 163543 163704 86 - . . . . . -1 -1 -1 . . . scaffold39334 WUBlastX LTR_Gypsy 22631 22936 154 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 525303 525827 153 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX RC_Helitron 106669 106857 58 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_Kolobok-IS4 161051 161215 48 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Gypsy 324874 325569 162 - . . . . . -1 -1 -1 . . . scaffold37002 WUBlastX LINE_L2 9181 9822 129 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-X 23847 24086 61 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX DNA_Maverick 411259 411597 124 - . . . . . -1 -1 -1 . . . scaffold38756 WUBlastX LINE_L1-Tx1 34741 35268 68 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 1026484 1027185 241 - . . . . . -1 -1 -1 . . . scaffold273 WUBlastX LINE_RTE-X 95277 96908 509 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Maverick 624629 624760 76 + . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 40842 41063 193 - . . . . . -1 -1 -1 . . . C27812 WUBlastX LTR_DIRS 2460 4187 842 - . . . . . -1 -1 -1 . . . C27812 WUBlastX LTR_DIRS 4100 4771 163 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 33018 34598 208 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Gypsy 223153 224454 1169 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 656381 657817 717 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 657816 658313 100 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L1-Tx1 234257 235816 864 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L1-Tx1 235828 236130 32 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Pao 38676 40019 1240 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_RTE-X 106095 107765 915 + . . . . . -1 -1 -1 . . . scaffold36494 WUBlastX LINE_CR1-L2 1113 1691 131 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_L2 599427 600074 144 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_L2 12 572 107 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 598536 598691 21 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold43574 WUBlastX DNA_IS4EU 273008 273133 81 + . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX DNA_IS4EU 273734 274003 127 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Tc1 67978 68898 103 - . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX DNA_Kolobok 64952 65281 100 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold41852 WUBlastX LINE_L1-Tx1 2216 2326 29 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 367653 367928 155 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_Penelope 103511 103966 21 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX DNA_Maverick 7448 7600 71 + . . . . . -1 -1 -1 . . . C33510 WUBlastX LINE_RTE-X 5168 5236 49 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_RTE-X 96217 96588 73 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 581505 581927 122 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold461 WUBlastX DNA_Maverick 624602 624748 40 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 728813 729043 33 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 1196832 1199069 1093 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Maverick 166603 166890 49 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LINE_L2 174978 176045 459 - . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX DNA_Academ 7783 7992 77 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold38448 WUBlastX LINE_Tad1? 46020 46547 84 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX DNA_hAT-Tip100 178540 178824 67 - . . scaffold305 GLEAN mRNA 172174 179381 0.995798 - . ID=CGI_10019119; scaffold976 WUBlastX LTR_Pao 46363 46794 209 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold1571 WUBlastX LTR_Pao 273899 273961 23 + . . . . . -1 -1 -1 . . . scaffold39274 WUBlastX LINE_CR1 29331 29444 44 - . . . . . -1 -1 -1 . . . scaffold1595 WUBlastX LINE_CR1-L2 10756 11124 153 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_CR1 398753 399064 133 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold630 WUBlastX LTR_DIRS 489969 490103 23 + . . . . . -1 -1 -1 . . . scaffold33588 WUBlastX LTR_Gypsy 13904 14188 157 + . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LTR_Gypsy 23927 24322 192 + . . scaffold35994 GLEAN mRNA 21382 24601 0.722015 + . ID=CGI_10001675; scaffold1436 WUBlastX LTR_Gypsy 26575 26952 91 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 113126 113479 114 + . . . . . -1 -1 -1 . . . C33256 WUBlastX DNA_TcMar-Tc1 6366 6452 26 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LINE_L1 266814 267389 85 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold852 WUBlastX LTR_Ngaro 105398 105952 177 + . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LTR_Ngaro 449696 450250 177 - . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-X 119884 120075 70 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-X 1237571 1237687 45 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-X 1237767 1238039 27 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 400233 400490 66 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 341558 342256 494 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 342925 343101 166 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 343100 343228 108 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold1251 WUBlastX LTR_Pao 42840 42926 20 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 267356 267952 152 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LTR_Gypsy 306915 309275 1349 - . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold448 WUBlastX LTR_Gypsy-Cigr 172745 173308 180 + . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_L2 38837 39775 24 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Ngaro 521778 522287 203 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 48629 49261 167 - . . . . . -1 -1 -1 . . . scaffold35808 WUBlastX LTR_Gypsy 22443 23294 157 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 514533 515057 166 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 597271 597369 38 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold39720 WUBlastX DNA_Harbinger 924 1292 178 + . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX DNA_IS4EU 46032 46469 192 + . . . . . -1 -1 -1 . . . C32578 WUBlastX LINE_L1 10659 10928 64 + . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX LINE_L1-Tx1 36825 37754 95 + . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX LINE_RTE-BovB 12666 12941 91 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_RTE-BovB 192130 192549 77 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_RTE-BovB 192561 192896 108 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_RTE-RTE 948472 948555 21 + . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold42584 WUBlastX LINE_RTE-X 135001 135198 37 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-X 357609 358037 45 - . . . . . -1 -1 -1 . . . scaffold35272 WUBlastX LINE_RTE-X 7608 7775 79 - . . . . . -1 -1 -1 . . . scaffold941 WUBlastX DNA_TcMar-Tc1 34080 34277 20 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Gypsy 179360 180121 749 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 225523 225990 309 - . . . . . -1 -1 -1 . . . scaffold1354 WUBlastX LINE_L1-Tx1 171709 174201 1162 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold1546 WUBlastX RC_Helitron 191073 191624 88 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold156 WUBlastX LINE_L1-Tx1 709883 710653 507 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_L1-Tx1 711611 711898 34 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_L2 724736 725056 173 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LTR_Gypsy-Cigr 61413 61685 186 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold610 WUBlastX LTR_Pao 292766 293053 111 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 590530 590934 59 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L2 1569489 1570151 172 - . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_CR1 191157 191456 119 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold43844 WUBlastX LTR_Gypsy 324705 324821 24 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 623392 623907 82 - . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LTR_Ngaro 228820 228981 75 + . . . . . -1 -1 -1 . . . scaffold1824 WUBlastX LTR_DIRS 96988 97305 80 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_Jockey 360657 360938 38 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Ngaro 456058 456639 180 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_Harbinger 681648 681761 54 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold88 WUBlastX LINE_L2 46695 47099 63 - . . . . . -1 -1 -1 . . . scaffold268 WUBlastX LINE_L1 119402 119566 22 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1-Tx1 1118602 1119237 112 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 221659 222489 182 - . . . . . -1 -1 -1 . . . scaffold1286 WUBlastX DNA_MuDR 161091 162464 134 + . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LINE_RTE-X 92274 92876 164 + . . scaffold459 GLEAN mRNA 88021 99888 0.843454 + . ID=CGI_10018169; scaffold1018 WUBlastX DNA_Maverick 492641 493183 97 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Maverick 350186 350917 173 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX DNA_TcMar-Tc1 456837 456941 25 - . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1-Tx1 37859 38245 86 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_L1-Tx1 128626 128997 154 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 637338 637748 254 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 634464 635846 528 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 635858 636439 359 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1462 WUBlastX RC_Helitron 6996 10430 1296 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L1-Tx1 25852 26436 413 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L1-Tx1 26430 26924 315 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L1-Tx1 27158 27904 471 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L1-Tx1 27862 28098 144 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX DNA_Crypton 3600 3659 32 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX DNA_Crypton 3781 4446 77 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy-Cigr 26220 26534 77 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 233904 233984 59 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 234163 234312 56 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX DNA_TcMar-Tc2 87515 87694 93 + . . . . . -1 -1 -1 . . . scaffold38302 WUBlastX LINE_L1-Tx1 44871 45422 119 - . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LINE_CR1 12731 13708 95 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LINE_Penelope 112720 113652 24 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_Proto2 203578 204879 158 - . . . . . -1 -1 -1 . . . scaffold1876 WUBlastX LINE_RTE-BovB 108832 109302 129 + . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 170255 170308 39 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold35358 WUBlastX LINE_RTE-X 9352 9942 91 + . . . . . -1 -1 -1 . . . C32056 WUBlastX LINE_L1-Tx1 5950 6537 84 + . . . . . -1 -1 -1 . . . C31300 WUBlastX LTR_Gypsy 5279 5461 62 - . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Maverick 44752 46563 1492 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold43648 WUBlastX LTR_Pao 115072 115875 400 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy-Cigr 48586 48723 27 + . . . . . -1 -1 -1 . . . C35168 WUBlastX LTR_Gypsy 20339 21529 477 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Gypsy-Cigr 223734 224273 152 + . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LTR_Gypsy 72675 72935 163 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 370843 370968 89 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Gypsy 207027 207164 108 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_hAT-Tip100 213680 214144 133 + . . . . . -1 -1 -1 . . . scaffold1721 WUBlastX DNA_IS4EU 1453 1734 85 + . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1 411671 412360 152 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX LTR_Ngaro 366087 366809 168 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 134609 134707 71 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 134713 134886 24 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 134937 135086 59 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_RTE-X 742988 743572 168 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L1-Tx1 455908 456276 197 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 88595 88651 20 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; C31300 WUBlastX LTR_Gypsy 5676 6086 390 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 27214 27726 114 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 28577 29302 347 - . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX LTR_Pao 114781 115923 337 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX LTR_Pao 115865 117496 863 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_IS4EU 790294 791037 195 - . . . . . -1 -1 -1 . . . scaffold38674 WUBlastX LINE_L1-Tx1 50103 50444 54 - . . . . . -1 -1 -1 . . . scaffold38674 WUBlastX LINE_L1-Tx1 50495 50629 41 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX DNA_Sola 171645 171887 46 + . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LTR_Ngaro 66732 67508 162 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 151308 152150 97 + . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1-Tx1 170756 171010 190 - . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1-Tx1 171347 171475 25 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_L1-Tx1 646481 646663 118 + . . . . . -1 -1 -1 . . . scaffold41390 WUBlastX LINE_L1-Tx1 157 1761 1033 - . . . . . -1 -1 -1 . . . scaffold41390 WUBlastX LINE_L1-Tx1 1707 2708 456 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LTR_ERV1 140572 140700 29 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 735625 736062 157 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_hAT-hATw 102574 103518 223 - . . . . . -1 -1 -1 . . . C18664 WUBlastX DNA_Helitron 2 559 211 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 130280 130906 148 - . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LINE_L1 16352 17038 60 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1 57423 57959 164 + . . . . . -1 -1 -1 . . . scaffold366 WUBlastX LINE_RTE-X 102295 102960 107 + . . . . . -1 -1 -1 . . . scaffold41988 WUBlastX DNA_PiggyBac 97879 98418 142 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 1100520 1100894 123 - . . . . . -1 -1 -1 . . . scaffold1536 WUBlastX LTR_Gypsy 29058 31259 1703 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_CR1-L2 447264 447326 22 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy 198232 198333 83 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX DNA_Kolobok-IS4 401559 402071 78 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold541 WUBlastX LINE_I 469602 471608 30 + . . scaffold541 GLEAN mRNA 466590 480582 0.782383 + . ID=CGI_10022394; scaffold1521 WUBlastX DNA_TcMar-Tc1 217413 217655 112 + . . scaffold1521 GLEAN mRNA 212318 231130 0.482046 + . ID=CGI_10017939; scaffold165 WUBlastX LTR_Gypsy 110693 110923 46 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold1131 WUBlastX LINE_RTE-X 17101 17718 162 - . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_RTE-X 32239 32730 132 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 35548 35652 56 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy-Cigr 723074 725161 1341 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy-Cigr 729884 731971 1341 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold1188 WUBlastX LTR_Gypsy 707329 708615 1066 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 734420 734527 68 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 735362 735553 59 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 737850 738800 721 + . . . . . -1 -1 -1 . . . scaffold43562 WUBlastX LINE_CR1 167148 167780 180 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167148 167780 180 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold557 WUBlastX LINE_CR1 389590 390363 190 - . . scaffold557 GLEAN mRNA 389014 397940 0.685724 - . ID=CGI_10017978; scaffold1194 WUBlastX LINE_CR1 3710 4483 190 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LINE_CR1 387401 388594 169 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 268737 268964 53 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_DIRS 24551 25111 225 + . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LTR_Ngaro 15435 16199 205 + . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LTR_Gypsy 70281 70334 20 - . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_TcMar-Marin 375149 375481 256 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_TcMar-Tc1 14317 15267 67 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX DNA_TcMar-Fot1 120830 121021 74 - . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_Penelope 118126 118839 204 - . . . . . -1 -1 -1 . . . scaffold35110 WUBlastX LINE_L1 5957 6424 246 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1 326754 327248 245 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1 413998 414420 182 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_L1-Tx1 387711 387950 26 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_L1-Tx1 388317 388787 139 + . . . . . -1 -1 -1 . . . scaffold40068 WUBlastX LINE_RTE-X 69975 70649 183 - . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_RTE-BovB 265893 266051 91 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L1-Tx1 385535 385699 45 - . . . . . -1 -1 -1 . . . scaffold309 WUBlastX LTR_Gypsy-Cigr 131368 132399 190 + . . . . . -1 -1 -1 . . . scaffold35138 WUBlastX LTR_Gypsy 15074 15490 34 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Gypsy 254721 255125 309 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Pao 170554 171708 785 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Pao 172892 174289 686 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold39858 WUBlastX RC_Helitron 47071 47373 21 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LINE_L2 96405 97091 213 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_Kolobok-IS4 232654 233481 160 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_IS4EU 153831 154151 99 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_Proto2 458294 458650 37 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold347 WUBlastX LINE_L1-Tx1 62767 63261 173 - . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX LTR_Gypsy 112447 116058 2091 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1-L2 128979 129125 89 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1-L2 129122 129481 143 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 26184 26369 76 + . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LTR_Gypsy 186465 187034 225 - . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Ngaro 58419 58781 88 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold40088 WUBlastX LTR_Gypsy 32284 32691 42 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 62656 63069 73 - . . . . . -1 -1 -1 . . . scaffold1721 WUBlastX DNA_Kolobok-IS4 3655 3876 20 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_MuDR 64280 64513 65 - . . . . . -1 -1 -1 . . . scaffold1201 WUBlastX LTR_Gypsy 4647 5339 305 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_RTE-X 8904 9746 193 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_RTE-X 406913 407566 131 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_TcMar-Tc1 222577 222930 94 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_CR1 111431 112651 182 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX DNA_MuDR 129239 129631 85 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX DNA_MuDR 129656 130072 70 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX DNA_MuDR 130170 130268 37 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 264700 264858 43 - . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX DNA_PiggyBac 11907 12422 128 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold1403 WUBlastX LTR_DIRS 613513 614202 45 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX RC_Helitron 96547 98334 647 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LTR_Ngaro 90735 90977 139 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_Ngaro 76388 76537 71 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_hAT-Ac 92624 93541 188 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold873 WUBlastX DNA_Harbinger 233277 233474 61 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 233614 233811 111 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 234163 234285 82 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_Sola 754683 755807 254 + . . scaffold383 GLEAN mRNA 742434 758358 1 + . ID=CGI_10023553; scaffold541 WUBlastX LTR_Gypsy 599158 599205 25 + . . . . . -1 -1 -1 . . . scaffold640 WUBlastX LTR_Gypsy 148127 148879 710 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_CR1 165803 166387 22 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Pao 243 431 92 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Pao 410 529 58 + . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy 96479 96988 298 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 38762 38950 66 + . . . . . -1 -1 -1 . . . scaffold38290 WUBlastX DNA_IS4EU 12621 13703 131 - . . . . . -1 -1 -1 . . . scaffold287 WUBlastX LINE_L1-Tx1 61577 62461 225 + . . . . . -1 -1 -1 . . . scaffold287 WUBlastX LINE_L1-Tx1 62529 62843 22 + . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX DNA_Sola 108060 109643 198 - . . . . . -1 -1 -1 . . . scaffold1161 WUBlastX LTR_Gypsy 22895 23683 556 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_Harbinger 669892 670071 47 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_Harbinger 671124 671300 158 + . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_RTE-BovB 236263 236649 97 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_Sola 754251 755858 232 + . . scaffold383 GLEAN mRNA 742434 758358 1 + . ID=CGI_10023553; scaffold53 WUBlastX DNA_Sola 1160547 1160816 136 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold40624 WUBlastX LINE_L1-Tx1 89252 89641 103 + . . . . . -1 -1 -1 . . . scaffold1299 WUBlastX LINE_RTE-BovB 141478 141657 58 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold21736 WUBlastX LTR_Gypsy 182 1348 230 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy 91189 91587 186 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX DNA_Kolobok 896393 896731 87 - . . scaffold392 GLEAN mRNA 896113 900283 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 896988 897230 111 - . . scaffold392 GLEAN mRNA 896113 900283 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 897361 897576 44 - . . scaffold392 GLEAN mRNA 896113 900283 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 898023 898208 46 - . . scaffold392 GLEAN mRNA 896113 900283 0.782453 - . ID=CGI_10024239; scaffold241 WUBlastX DNA_Sola 523526 523684 72 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 87813 88301 64 + . . . . . -1 -1 -1 . . . scaffold39620 WUBlastX LTR_Pao 67792 68175 175 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_Kolobok-IS4 95550 95777 127 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 17609 17818 100 + . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX DNA_MuDR 13082 13558 236 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_CR1-L2 64350 64628 26 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1 197231 197929 89 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_RTE-X 248848 249804 157 + . . scaffold43836 GLEAN mRNA 242579 251086 0.650911 - . ID=CGI_10013062; scaffold1377 WUBlastX DNA_Kolobok-IS4 185293 185904 259 - . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold1377 WUBlastX DNA_Kolobok-IS4 185897 186310 48 - . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold680 WUBlastX LINE_Penelope 36982 37728 255 + . . scaffold680 GLEAN mRNA 28858 40321 0.544852 - . ID=CGI_10003337; scaffold43280 WUBlastX LTR_Ngaro 40426 41094 336 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 162162 162551 85 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L2 512581 512712 35 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold544 WUBlastX LTR_DIRS 563682 564386 95 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold41398 WUBlastX DNA_IS4EU 43064 43312 28 - . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX DNA_IS4EU 43347 43805 166 - . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX DNA_IS4EU 44074 44511 98 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX DNA_Harbinger 7527 7757 72 - . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 7527 7757 72 - . . scaffold38978 GLEAN mRNA 7539 8521 0.655792 - . ID=CGI_10003127; scaffold42274 WUBlastX DNA_Harbinger 126730 127083 147 + . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX DNA_Harbinger 128221 128481 83 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 268479 269006 124 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_L1 785908 786165 49 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_L2 454457 455443 230 + . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LINE_L1-Tx1 141872 142276 176 + . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LINE_L1-Tx1 142872 143267 40 + . . . . . -1 -1 -1 . . . scaffold37286 WUBlastX LINE_L1-Tx1 39626 40561 322 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_RTE-X 22795 23307 164 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold1605 WUBlastX LINE_L1-Tx1 828384 828584 63 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1-L2 72126 72293 65 + . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_DIRS? 53292 53816 186 + . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_DIRS? 53902 54126 134 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 368364 368459 37 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368364 368459 37 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold630 WUBlastX LTR_Gypsy 374131 375750 342 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold1796 WUBlastX LINE_L1 7394 7543 57 + . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX DNA_TcMar-Tc1 135238 135513 36 - . . scaffold1865 GLEAN mRNA 122219 140121 0.998221 + . ID=CGI_10013535; scaffold1730 WUBlastX DNA_TcMar-Tc1 211570 212007 284 + . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX DNA_TcMar-Tc1 56210 56446 66 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Ngaro 138606 138881 94 + . . . . . -1 -1 -1 . . . scaffold35070 WUBlastX DNA_Harbinger 17018 17662 309 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1 87668 87838 58 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA 333539 334297 105 - . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_L2 90649 92007 62 - . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX DNA_hAT 35872 37212 387 + . . scaffold42948 GLEAN mRNA 26605 37566 0.913626 + . ID=CGI_10008222; scaffold99 WUBlastX LTR_Ngaro 305005 305223 139 - . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX DNA_Kolobok 10445 10579 54 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold156 WUBlastX LINE_L1-Tx1 707398 707523 26 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 383755 383946 42 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_Sola 83122 83481 67 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_Sola 83481 84038 142 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_Sola 84556 84636 43 + . . . . . -1 -1 -1 . . . C28702 WUBlastX LTR_Gypsy 5038 5562 208 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LTR_Gypsy 875014 875811 391 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Gypsy 355173 355958 392 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold1024 WUBlastX LTR_Gypsy 1677376 1677978 403 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Harbinger 69335 70333 338 + . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX LINE_L1-Tx1 44034 44588 193 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 115101 115235 83 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 116760 116891 71 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 117008 117142 104 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX DNA_Maverick 9317 9925 369 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 155154 155786 364 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX DNA_TcMar-Tc2 272705 272860 97 + . . . . . -1 -1 -1 . . . scaffold326 WUBlastX DNA_TcMar-Tc1 406 1149 329 + . . scaffold326 GLEAN mRNA 37 8806 0.855561 + . ID=CGI_10003294; scaffold1570 WUBlastX LTR_Gypsy-Cigr 44568 46400 298 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy 295905 296435 225 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 265027 265137 33 - . . . . . -1 -1 -1 . . . scaffold1464 WUBlastX LTR_Gypsy 2336 2596 78 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold172 WUBlastX LTR_DIRS 263505 264347 377 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX DNA_Crypton 523502 524014 224 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX DNA_Crypton 523992 524504 162 + . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX DNA_hAT-hATw 101351 101434 38 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1 196582 196935 184 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_L1 3492 3770 22 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 323387 323725 62 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; C30294 WUBlastX LTR_DIRS 1364 1738 228 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy-Gmr1 283831 284073 48 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_Harbinger 626277 626492 90 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_Harbinger 626459 627058 225 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Harbinger 519424 519705 223 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 599393 600091 57 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_Kolobok 55418 55597 63 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 55669 55911 61 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 56103 56174 37 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 56195 56305 72 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 56498 57094 136 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold1632 WUBlastX LINE_RTE-X 37535 38239 289 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_Sola 337023 337193 63 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Tip100 762185 763021 253 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L2 123077 123313 33 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_Gypsy 242416 242862 180 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1785 WUBlastX LINE_L1-Tx1 626119 626547 92 + . . . . . -1 -1 -1 . . . C26486 WUBlastX LINE_Penelope 1076 1426 147 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 217415 218347 352 - . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; C31902 WUBlastX LINE_RTE-X 9251 10423 356 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_RTE-X 192070 192255 30 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 951256 951522 23 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold807 WUBlastX LINE_L2 176206 177411 267 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_L2 299762 300661 334 - . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_L2 75838 76413 146 + . . scaffold1222 GLEAN mRNA 68719 82791 0.648135 - . ID=CGI_10016236; scaffold1862 WUBlastX LINE_RTE-X 105760 105969 33 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_RTE-X 105968 106972 375 + . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LINE_CR1 21622 22509 332 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy 64428 64976 28 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold40560 WUBlastX DNA_Harbinger 56407 56508 79 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; C34116 WUBlastX DNA_Merlin 13944 14837 341 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LTR_Ngaro 162699 163652 333 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_TcMar-Tc1 86712 87743 408 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_L1-Tx1 185283 186209 383 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_L2 88016 88303 39 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 264479 264799 22 + . . . . . -1 -1 -1 . . . scaffold1252 WUBlastX LINE_RTE-BovB 207285 207818 182 + . . . . . -1 -1 -1 . . . scaffold1252 WUBlastX LINE_RTE-BovB 207757 208281 249 + . . . . . -1 -1 -1 . . . scaffold35966 WUBlastX LINE_L1-Tx1 25656 25745 22 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 424682 425014 65 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_CR1 404153 404551 29 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 1313924 1314538 243 - . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LINE_RTE-X 97823 98575 127 - . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_hAT-Ac 105029 105529 188 + . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_hAT-Ac 105543 105710 57 + . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX LTR_Ngaro 36694 36891 50 + . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX LTR_Ngaro 37271 37762 246 + . . . . . -1 -1 -1 . . . scaffold1052 WUBlastX LINE_RTE-X 78031 79116 373 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold1589 WUBlastX DNA_Maverick 151414 151563 53 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LTR_DIRS 303537 303680 21 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_L1-Tx1 226389 226865 101 + . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LTR_Gypsy 65802 66251 33 - . . scaffold40638 GLEAN mRNA 61308 67362 0.755375 - . ID=CGI_10004287; scaffold471 WUBlastX LTR_Gypsy 1223665 1223991 47 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 1224022 1224858 400 + . . . . . -1 -1 -1 . . . scaffold43302 WUBlastX DNA_PiggyBac 59908 60261 243 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold174 WUBlastX DNA_Sola 41760 42596 297 - . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L1-Tx1 827465 828394 187 + . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 76775 77089 214 + . . . . . -1 -1 -1 . . . scaffold1859 WUBlastX LINE_CR1-L2 46990 47919 244 - . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 43871 44179 34 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L1-Tx1 364872 365246 96 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold1186 WUBlastX LINE_RTE-RTE 155770 156789 88 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 383505 383627 21 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 392744 393028 178 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_CR1 441630 441911 99 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_CR1 223068 224582 354 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Gypsy 25229 25405 26 - . . . . . -1 -1 -1 . . . scaffold41174 WUBlastX DNA_hAT-Tip100 1 897 468 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L1-Tx1 296410 297579 280 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-BovB 735956 736126 64 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_Sola 613721 613783 44 - . . scaffold6 GLEAN mRNA 613145 618796 0.999953 - . ID=CGI_10022330; scaffold34594 WUBlastX LINE_L2 6113 6667 186 - . . scaffold34594 GLEAN mRNA 5594 16260 0.992512 + . ID=CGI_10001317; scaffold34594 WUBlastX LINE_L2 6678 7181 273 - . . scaffold34594 GLEAN mRNA 5594 16260 0.992512 + . ID=CGI_10001317; scaffold1014 WUBlastX LTR_Gypsy 387833 388402 246 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L1 334601 335251 99 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 233097 233252 40 - . . . . . -1 -1 -1 . . . scaffold35926 WUBlastX DNA_hAT-Ac 27057 28280 394 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_TcMar-Marin 185935 186198 116 + . . scaffold43844 GLEAN mRNA 182095 193587 0.917611 + . ID=CGI_10013151; scaffold43844 WUBlastX DNA_TcMar-Marin 187252 187656 230 + . . scaffold43844 GLEAN mRNA 182095 193587 0.917611 + . ID=CGI_10013151; scaffold79 WUBlastX LINE_RTE-BovB 499656 499802 49 + . . . . . -1 -1 -1 . . . scaffold38274 WUBlastX LINE_RTE-X 11763 12431 273 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 83071 83721 289 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold1578 WUBlastX LINE_L2 157426 158520 473 - . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LTR_Gypsy 47334 47696 167 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Gypsy 1236415 1237443 378 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 106341 106985 135 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 106963 107919 298 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 55259 55588 58 + . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LTR_DIRS 241760 242707 558 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_RTE-X 309677 309892 120 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 677075 677692 214 - . . . . . -1 -1 -1 . . . scaffold36926 WUBlastX LTR_Pao 10360 10551 23 + . . . . . -1 -1 -1 . . . C31370 WUBlastX LTR_Gypsy 5287 5898 232 - . . . . . -1 -1 -1 . . . scaffold387 WUBlastX LTR_Gypsy 33508 34287 477 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold387 WUBlastX LTR_Gypsy 35171 35359 156 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold442 WUBlastX LTR_Gypsy 45431 46084 641 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 101095 101439 181 - . . . . . -1 -1 -1 . . . scaffold326 WUBlastX LTR_Gypsy 65512 66399 477 + . . . . . -1 -1 -1 . . . scaffold326 WUBlastX LTR_Gypsy 66659 67006 187 + . . scaffold326 GLEAN mRNA 66602 67012 0.649408 + . ID=CGI_10003297; scaffold790 WUBlastX LTR_Gypsy 102617 102811 62 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 103482 104417 401 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_DIRS 124978 125595 121 + . . scaffold1670 GLEAN mRNA 125122 125499 1 + . ID=CGI_10017601; scaffold1670 WUBlastX LTR_DIRS 125720 126049 126 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_DIRS 126031 127050 316 + . . . . . -1 -1 -1 . . . scaffold42166 WUBlastX LINE_RTE-X 9026 10051 302 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_RTE-X 67388 68185 329 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_L1-Tx1 3594 3956 93 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 15211 16134 482 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 860173 860310 23 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 861771 862169 123 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 862264 862935 133 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1889 WUBlastX LINE_L1-Tx1 549614 549856 112 - . . . . . -1 -1 -1 . . . scaffold37892 WUBlastX DNA_Harbinger 25787 26680 640 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_MuDR 605976 607616 527 - . . . . . -1 -1 -1 . . . scaffold36336 WUBlastX DNA_PiggyBac 28544 29650 658 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 58975 60267 585 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-BovB 716797 716871 35 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold296 WUBlastX LINE_RTE-X 238422 240209 495 - . . scaffold296 GLEAN mRNA 234533 247179 0.999949 - . ID=CGI_10011701; scaffold1020 WUBlastX LTR_Gypsy 259100 259228 40 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 141136 141576 152 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 10002 10169 135 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L1-Tx1 136577 136762 83 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L1-Tx1 137917 138984 68 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 553334 553402 33 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold730 WUBlastX LTR_Gypsy 210650 210961 39 + . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LTR_Gypsy 83345 83536 21 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_Penelope 71095 71226 24 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_Penelope 71259 71429 26 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_Penelope 72378 73139 220 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 583509 583880 51 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 583865 584251 112 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 584630 585673 229 + . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L1-Tx1 10993 12036 225 + . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L1-Tx1 12035 12523 408 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 1079253 1079999 582 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX RC_Helitron 64671 66413 656 + . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold593 WUBlastX LINE_L2 189345 190097 365 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 149559 151016 204 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold392 WUBlastX LTR_Gypsy-Cigr 126761 126979 124 - . . . . . -1 -1 -1 . . . scaffold33618 WUBlastX LTR_DIRS 3601 3879 48 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy-Cigr 127315 127656 319 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy 338751 338882 20 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-X 344604 345005 57 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_RTE-X 78456 79112 74 + . . . . . -1 -1 -1 . . . scaffold34282 WUBlastX LINE_RTE-X 8283 8987 333 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold34282 WUBlastX LINE_RTE-X 8999 9484 314 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold1788 WUBlastX DNA_Maverick 33456 33524 29 + . . . . . -1 -1 -1 . . . scaffold29126 WUBlastX LINE_L2 4621 5991 702 - . . scaffold29126 GLEAN mRNA 802 4649 1 - . ID=CGI_10000483; scaffold38514 WUBlastX LTR_Gypsy 4 1209 776 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX DNA_Maverick 302767 303813 773 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-X 77698 78246 74 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold280 WUBlastX LINE_L2 527871 529061 783 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy 562465 563316 267 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 171952 172836 633 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 1224145 1225695 590 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L2 612781 613278 322 + . . . . . -1 -1 -1 . . . scaffold42060 WUBlastX LINE_RTE-X 75337 75804 121 + . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LINE_RTE-X 424015 425427 490 - . . . . . -1 -1 -1 . . . scaffold1879 WUBlastX LINE_CR1-L2 120064 120471 147 - . . scaffold1879 GLEAN mRNA 117371 122368 1 - . ID=CGI_10007960; scaffold1213 WUBlastX LTR_Gypsy-Cigr 1175285 1176154 620 + . . . . . -1 -1 -1 . . . scaffold1290 WUBlastX LTR_Gypsy 9764 10225 45 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy 74672 74737 25 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Pao 1272875 1273549 436 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 495250 497634 463 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LTR_Gypsy 87603 88109 48 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 327841 328341 125 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 328616 329119 330 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 329125 329550 147 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 329943 330296 152 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1024 WUBlastX LINE_RTE-X 1620866 1622044 509 - . . scaffold1024 GLEAN mRNA 1620821 1621741 0.999894 - . ID=CGI_10028582; scaffold1024 WUBlastX LINE_RTE-X 1622757 1622984 155 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Pao 551638 551982 58 - . . scaffold107 GLEAN mRNA 542463 558772 0.592352 + . ID=CGI_10025060; scaffold1329 WUBlastX LINE_Jockey 265813 266103 43 - . . . . . -1 -1 -1 . . . scaffold738 WUBlastX DNA_hAT-Tip100 1935 2261 45 + . . scaffold738 GLEAN mRNA 1336 4448 1 + . ID=CGI_10000540; scaffold664 WUBlastX LTR_Ngaro 540333 540671 41 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_CR1 54683 54883 32 - . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LINE_CR1 172777 172929 33 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_CR1-L2 18346 18546 77 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_CR1-L2 122879 122986 69 + . . scaffold1698 GLEAN mRNA 115530 127809 0.999999 + . ID=CGI_10019370; scaffold59 WUBlastX LINE_L2 129822 130058 62 - . . . . . -1 -1 -1 . . . C26338 WUBlastX LINE_L2 2880 3149 61 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LTR_Gypsy 84684 84803 56 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Gypsy 673615 674040 53 - . . . . . -1 -1 -1 . . . scaffold43108 WUBlastX LTR_ERVK 157910 158089 24 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_ERV1 64273 64476 24 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold481 WUBlastX LINE_L2 1229536 1229733 75 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1491 WUBlastX LINE_L2 79897 80436 22 + . . . . . -1 -1 -1 . . . C22710 WUBlastX LTR_DIRS 963 1070 36 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Gypsy 12109 12429 59 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX DNA_Harbinger 225333 225536 57 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Harbinger 72041 72184 79 + . . scaffold126 GLEAN mRNA 72071 89869 0.988186 + . ID=CGI_10019179; scaffold1001 WUBlastX DNA_Harbinger 146288 146656 70 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX RC_Helitron 427392 427742 56 + . . scaffold676 GLEAN mRNA 427167 428131 0.984027 + . ID=CGI_10021426; C27552 WUBlastX DNA_hAT-Tip100 365 1006 61 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX DNA_hAT-Ac 403793 404005 56 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX DNA_IS4EU 219055 219423 28 + . . . . . -1 -1 -1 . . . scaffold754 WUBlastX DNA_IS4EU 141008 141676 47 + . . scaffold754 GLEAN mRNA 139769 141980 1 - . ID=CGI_10014067; scaffold41400 WUBlastX DNA_IS4EU 72628 73002 43 - . . scaffold41400 GLEAN mRNA 67304 82045 0.489818 + . ID=CGI_10005034; scaffold139 WUBlastX DNA_IS4EU 50457 50591 27 + . . . . . -1 -1 -1 . . . scaffold139 WUBlastX DNA_IS4EU 50761 50853 29 + . . . . . -1 -1 -1 . . . scaffold139 WUBlastX DNA_IS4EU 50892 50969 31 + . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX DNA_IS4EU 31052 31144 49 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX DNA_TcMar-Tc1 590444 590665 62 - . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1860 WUBlastX LINE_L1 245907 245999 35 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_RTE-BovB 1058656 1059009 39 + . . . . . -1 -1 -1 . . . scaffold675 WUBlastX DNA_PiggyBac 71668 71901 81 + . . . . . -1 -1 -1 . . . scaffold296 WUBlastX LINE_R2 6554 6589 29 + . . . . . -1 -1 -1 . . . scaffold38568 WUBlastX LINE_RTE-X 41324 41635 36 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_RTE-X 378060 378296 59 + . . scaffold563 GLEAN mRNA 371737 379906 0.613364 - . ID=CGI_10019837; scaffold334 WUBlastX LTR_Gypsy-Troyk 818393 818671 29 - . . scaffold334 GLEAN mRNA 818405 818653 0.645784 - . ID=CGI_10025963; C31132 WUBlastX LINE_CR1 6938 7549 35 + . . . . . -1 -1 -1 . . . scaffold1103 WUBlastX LINE_L2 1844 2023 74 - . . . . . -1 -1 -1 . . . scaffold42128 WUBlastX LINE_CR1 136918 137238 62 - . . scaffold42128 GLEAN mRNA 133578 138420 0.702204 - . ID=CGI_10006201; scaffold142 WUBlastX LINE_CR1-L2 750463 750570 56 + . . . . . -1 -1 -1 . . . scaffold285 WUBlastX LTR_DIRS 231734 232024 56 + . . . . . -1 -1 -1 . . . scaffold38848 WUBlastX LINE_L2 29111 29242 74 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LTR_DIRS 346057 346284 52 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LTR_DIRS 99691 99858 52 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Ngaro 62393 62680 36 + . . scaffold1232 GLEAN mRNA 53895 66601 0.999898 - . ID=CGI_10014987; scaffold1882 WUBlastX LTR_Ngaro 148372 148914 99 - . . scaffold1882 GLEAN mRNA 139430 150969 0.999129 + . ID=CGI_10010506; scaffold1551 WUBlastX LTR_Ngaro 123957 124154 94 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 133086 133187 22 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 106667 106831 43 - . . scaffold728 GLEAN mRNA 80377 108098 0.99809 - . ID=CGI_10018228; scaffold6 WUBlastX DNA_IS4EU 714849 714950 58 - . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold1808 WUBlastX DNA_Kolobok-IS4 47988 48101 30 + . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX DNA_IS4EU 218943 219299 53 - . . . . . -1 -1 -1 . . . scaffold39946 WUBlastX DNA_hAT-Tip100 27759 27920 82 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX DNA_hAT-Blackja 120703 120933 28 + . . scaffold1160 GLEAN mRNA 114601 121331 0.290577 - . ID=CGI_10015349; scaffold614 WUBlastX DNA_Harbinger 343116 343337 89 - . . scaffold614 GLEAN mRNA 339324 355515 0.640385 - . ID=CGI_10016269; scaffold40412 WUBlastX DNA_Harbinger 9466 9624 51 - . . scaffold40412 GLEAN mRNA 4188 16676 0.991013 - . ID=CGI_10004112; scaffold773 WUBlastX DNA_Harbinger 259016 259177 44 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold354 WUBlastX DNA_Harbinger 954853 955011 51 + . . . . . -1 -1 -1 . . . scaffold39346 WUBlastX LTR_Gypsy 33561 33728 67 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LTR_Gypsy 17167 17844 44 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L1 419314 420165 40 + . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_L1 237130 237330 38 - . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_L1 237494 237598 61 - . . scaffold1815 GLEAN mRNA 237374 237631 0.998748 - . ID=CGI_10010271; scaffold1843 WUBlastX LINE_L1 89286 89831 40 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LINE_Penelope 50295 50396 42 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_TcMar-Marin 696211 696603 45 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_TcMar-Fot1 696428 696628 74 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_L2 86773 87108 51 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-BovB 234473 234646 24 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LINE_RTE-X 230933 231304 47 - . . . . . -1 -1 -1 . . . scaffold42422 WUBlastX LINE_RTE-RTE 137098 137169 23 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 704785 705135 43 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 706125 706226 24 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 558094 558141 21 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_RTE-X 90081 90281 86 + . . scaffold828 GLEAN mRNA 78778 92221 0.986584 - . ID=CGI_10007365; scaffold332 WUBlastX LINE_RTE-X 176767 176961 30 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_RTE-X 570012 570263 43 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_RTE-X 427 660 34 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_RTE-X 128540 128860 39 - . . . . . -1 -1 -1 . . . scaffold194 WUBlastX DNA_Sola 206500 207129 68 - . . scaffold194 GLEAN mRNA 205150 207069 0.728723 - . ID=CGI_10011067; scaffold751 WUBlastX DNA_TcMar-Tc1 155383 155913 43 - . . scaffold751 GLEAN mRNA 154176 165740 0.999947 - . ID=CGI_10017388; scaffold635 WUBlastX LTR_Gypsy 117822 118010 75 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold33486 WUBlastX LINE_L1-Tx1 1043 1192 32 + . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LTR_DIRS 253242 253577 54 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_En-Spm 51763 52041 43 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LTR_Pao 273337 273570 31 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_CR1 745951 746307 26 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-BovB 394116 394364 71 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_RTE-BovB 43130 43318 101 - . . . . . -1 -1 -1 . . . scaffold36020 WUBlastX LTR_Gypsy 21622 21804 81 - . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_L2 43718 44497 75 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_Ngaro 285379 285792 41 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 96319 96411 20 - . . . . . -1 -1 -1 . . . C30570 WUBlastX LINE_L1 5246 5959 40 + . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LINE_L1 121606 122358 39 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Harbinger 258121 258264 24 - . . scaffold90 GLEAN mRNA 256704 258219 0.982419 + . ID=CGI_10015169; scaffold1532 WUBlastX DNA_Harbinger 176657 176953 77 - . . scaffold1532 GLEAN mRNA 176651 177200 0.889583 - . ID=CGI_10028236; scaffold1321 WUBlastX LINE_I 97111 97632 112 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX DNA_hAT-Ac 293877 294188 93 + . . scaffold1210 GLEAN mRNA 285896 306998 0.325296 + . ID=CGI_10014610; scaffold156 WUBlastX DNA_IS4EU 303352 303654 77 - . . scaffold156 GLEAN mRNA 302829 305068 0.999798 - . ID=CGI_10026492; scaffold120 WUBlastX DNA_TcMar-Tc1 5200 5379 49 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 1340984 1341265 40 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX DNA_Kolobok-Hyd 268778 268972 41 - . . scaffold1448 GLEAN mRNA 268542 268915 0.943479 - . ID=CGI_10011859; scaffold773 WUBlastX LINE_L1 285027 285203 23 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_RTE-BovB 287294 287470 99 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 265792 265980 75 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_RTE-X 308224 308412 75 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_RTE-X 85171 85338 59 - . . . . . -1 -1 -1 . . . scaffold1354 WUBlastX DNA_Sola 383651 383905 76 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 801426 801824 37 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold575 WUBlastX LTR_Gypsy 93541 94200 49 + . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1-Tx1 139693 140001 81 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_L1-Tx1 72131 72364 74 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L1-Tx1 307977 308192 78 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_CR1-L2 108166 108855 55 + . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_CR1 190796 190918 46 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold1743 WUBlastX DNA_TcMar-Marin 163632 163970 51 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Ngaro 1261759 1261932 95 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 354180 354782 77 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Ngaro 223418 223747 28 - . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 184793 185428 47 - . . . . . -1 -1 -1 . . . scaffold38944 WUBlastX LTR_Gypsy 22826 23467 57 + . . scaffold38944 GLEAN mRNA 22468 23617 0.769564 + . ID=CGI_10003070; scaffold298 WUBlastX LTR_Gypsy 281290 281688 109 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold148 WUBlastX LTR_Gypsy 100286 100492 102 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 229336 229812 104 - . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LTR_Gypsy 172622 172912 97 + . . . . . -1 -1 -1 . . . scaffold952 WUBlastX LINE_L1 23196 23495 31 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold983 WUBlastX DNA_TcMar-Tc1 369484 369585 22 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX DNA_TcMar-Fot1 87443 87664 63 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_P 145603 145860 73 - . . . . . -1 -1 -1 . . . scaffold1835 WUBlastX LINE_RTE-BovB 316150 316437 71 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Maverick 181211 181801 62 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_RTE-X 56160 56513 63 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Ngaro 25198 25446 75 - . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX DNA_Sola 19020 19223 37 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 602732 602881 24 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Zator 246181 246354 48 + . . scaffold237 GLEAN mRNA 221874 256381 0.776496 + . ID=CGI_10021574; scaffold237 WUBlastX DNA_Zator 246617 246670 29 + . . scaffold237 GLEAN mRNA 221874 256381 0.776496 + . ID=CGI_10021574; scaffold1061 WUBlastX DNA_PiggyBac 155906 156052 25 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_CR1 547236 547643 62 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_CR1-L2 315130 315255 45 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold22 WUBlastX LTR_Ngaro 1812748 1813062 73 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_CR1 792179 792391 29 - . . scaffold501 GLEAN mRNA 786323 819712 0.813868 + . ID=CGI_10027531; scaffold1226 WUBlastX DNA_Crypton 19890 20225 99 + . . scaffold1226 GLEAN mRNA 14403 23712 0.702385 + . ID=CGI_10002681; scaffold1014 WUBlastX DNA_Crypton 516205 516987 31 - . . scaffold1014 GLEAN mRNA 485363 517722 0.614012 - . ID=CGI_10020274; scaffold40010 WUBlastX DNA_IS4EU 77742 78227 56 + . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX DNA_IS4EU 78312 78383 50 + . . . . . -1 -1 -1 . . . scaffold1497 WUBlastX DNA_Kolobok 24509 24751 68 + . . scaffold1497 GLEAN mRNA 15026 34353 0.836332 + . ID=CGI_10006959; scaffold1144 WUBlastX LTR_Gypsy 174252 174386 60 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_Penelope 489532 489681 77 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_TcMar-Marin 273518 273793 55 - . . . . . -1 -1 -1 . . . scaffold38216 WUBlastX LINE_L1 52523 52633 24 + . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX LINE_RTE-X 80210 80602 71 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_PiggyBac 631804 631944 31 - . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 186694 187236 69 - . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_RTE-X 553791 553967 89 + . . . . . -1 -1 -1 . . . scaffold41824 WUBlastX LINE_RTE-X 58840 59163 41 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_L1-Tx1 114941 115351 91 - . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_DIRS 52260 52532 23 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold58 WUBlastX DNA_TcMar-Tc1 211204 211350 20 - . . . . . -1 -1 -1 . . . scaffold42788 WUBlastX DNA_TcMar-Tc1 67803 68123 53 + . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold759 WUBlastX LINE_CR1 74140 74349 44 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_CR1 137903 138058 48 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_Merlin 249479 249880 111 + . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold818 WUBlastX DNA_Academ 4017 4553 110 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_DIRS 27911 28711 92 - . . . . . -1 -1 -1 . . . scaffold43108 WUBlastX LTR_DIRS 123938 124738 92 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L2 132779 133087 111 - . . scaffold631 GLEAN mRNA 131392 145592 0.831917 - . ID=CGI_10014172; scaffold501 WUBlastX LTR_Ngaro 926606 926926 110 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Ngaro 333932 334354 74 + . . scaffold304 GLEAN mRNA 327782 339627 0.999019 - . ID=CGI_10016567; scaffold191 WUBlastX DNA_En-Spm 51982 53061 55 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_Kolobok 7026 7325 26 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_ERV1 1142798 1143268 97 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Kolobok 648375 648611 26 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Kolobok 648590 649018 61 + . . . . . -1 -1 -1 . . . scaffold1198 WUBlastX DNA_Kolobok 20621 21301 63 + . . . . . -1 -1 -1 . . . C33378 WUBlastX DNA_TcMar-Fot1 2147 2332 31 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_TcMar-Tc1 193968 194258 50 + . . scaffold184 GLEAN mRNA 186538 196154 0.912721 - . ID=CGI_10014797; C28702 WUBlastX DNA_TcMar-Tc1 2382 2516 52 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_Penelope 320285 320560 89 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_Penelope 135135 135395 84 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Maverick 332867 333280 92 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 644792 645238 121 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-X 147779 148084 123 - . . . . . -1 -1 -1 . . . scaffold493 WUBlastX LINE_RTE-X 504 773 79 - . . . . . -1 -1 -1 . . . scaffold503 WUBlastX LINE_RTE-X 16025 16318 81 - . . . . . -1 -1 -1 . . . scaffold1203 WUBlastX LINE_RTE-X 147537 147809 82 - . . . . . -1 -1 -1 . . . scaffold35956 WUBlastX DNA_Sola 504 776 57 - . . . . . -1 -1 -1 . . . scaffold35956 WUBlastX DNA_Sola 1628 1780 46 - . . . . . -1 -1 -1 . . . scaffold35956 WUBlastX DNA_Sola 2146 2244 35 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_L2 51910 52836 50 - . . . . . -1 -1 -1 . . . C30752 WUBlastX LINE_L2 6500 6775 62 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_CR1-L2 670386 670511 40 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold1237 WUBlastX LTR_Gypsy 222155 222307 20 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold161 WUBlastX LTR_Gypsy 110020 110184 26 + . . scaffold161 GLEAN mRNA 106688 117037 0.832376 + . ID=CGI_10008589; scaffold40584 WUBlastX DNA_Kolobok-IS4 34404 34952 132 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_hAT-Tip100 17470 17682 130 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX RC_Helitron 22805 23245 53 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_Kolobok 346880 347080 65 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold733 WUBlastX LINE_Penelope 513063 513179 28 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold773 WUBlastX LINE_L2 150756 150938 30 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold38854 WUBlastX DNA_TcMar-Tc1 50040 50513 78 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX DNA_TcMar-Tc1 50578 50931 51 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_TcMar-Marin 268744 269433 91 + . . . . . -1 -1 -1 . . . scaffold40442 WUBlastX LINE_L2 86910 86969 20 - . . . . . -1 -1 -1 . . . scaffold941 WUBlastX LINE_L1-Tx1 24932 25090 64 - . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_L1 36991 37203 90 - . . . . . -1 -1 -1 . . . scaffold1716 WUBlastX LINE_RTE-X 6057 6452 70 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 120305 120469 21 - . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX LINE_L1-Tx1 6005 6250 111 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold79 WUBlastX LINE_CR1-L2 857205 857408 48 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_PiggyBac 590083 590286 22 - . . . . . -1 -1 -1 . . . scaffold200 WUBlastX LTR_Ngaro 90775 90942 113 - . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LTR_DIRS? 330412 330717 81 - . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX DNA_IS4EU 219093 219356 111 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 397883 397954 57 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold1396 WUBlastX LINE_L2 127178 127420 140 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 179942 180367 80 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LINE_RTE-X 186794 187090 107 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-X 77203 77532 64 - . . scaffold203 GLEAN mRNA 73754 84317 0.651071 + . ID=CGI_10021063; scaffold513 WUBlastX DNA_Sola 534131 534370 42 + . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_TcMar-Tc1 16839 17168 32 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_L1-Tx1 193698 194135 51 - . . . . . -1 -1 -1 . . . scaffold43302 WUBlastX LINE_L1-Tx1 217952 218404 85 - . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_L1-Tx1 155333 155752 83 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 284600 285136 147 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold43818 WUBlastX LTR_Gypsy-Cigr 318121 318594 146 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_IS4EU 218795 219139 40 - . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX DNA_IS4EU 25765 25929 62 + . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LTR_Gypsy 21629 21979 50 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX DNA_TcMar-Tc1 13576 13995 141 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_Penelope 673842 674183 98 + . . . . . -1 -1 -1 . . . scaffold38498 WUBlastX LINE_Penelope 33656 34399 60 - . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_L1 467964 468026 29 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Kolobok 1580672 1580986 121 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold150 WUBlastX DNA_Kolobok 1581593 1581652 34 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold583 WUBlastX LINE_L1 58843 59649 122 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-BovB 452509 452904 57 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_Maverick 240088 240432 123 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold502 WUBlastX LINE_RTE-X 223948 224706 70 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX LINE_RTE-X 41905 41970 32 - . . . . . -1 -1 -1 . . . scaffold40526 WUBlastX LTR_DIRS 66930 67298 27 - . . . . . -1 -1 -1 . . . scaffold40526 WUBlastX LTR_DIRS 67403 67717 54 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 481310 481642 145 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_TcMar-Tc1 100904 100972 25 - . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_Jockey 2887 3078 21 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold1171 WUBlastX LINE_L2 44443 45294 64 - . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX LINE_CR1 40616 40807 77 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold39096 WUBlastX LTR_Gypsy-Cigr 22034 22738 108 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold1745 WUBlastX LTR_Ngaro 118382 118606 137 + . . scaffold1745 GLEAN mRNA 107455 123228 0.998783 - . ID=CGI_10005406; scaffold86 WUBlastX DNA_Academ 399734 399979 115 + . . scaffold86 GLEAN mRNA 398522 403007 0.217037 + . ID=CGI_10028152; scaffold722 WUBlastX LTR_Ngaro 301397 301738 34 - . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX DNA_IS4EU 4774 4998 52 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Gypsy 632231 632566 77 + . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy 51251 51832 149 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX DNA_Harbinger 130799 131119 87 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_Harbinger 707481 707621 69 + . . scaffold334 GLEAN mRNA 704564 710933 0.999675 - . ID=CGI_10025959; scaffold334 WUBlastX DNA_Harbinger 707481 707621 69 + . . scaffold334 GLEAN mRNA 704630 717663 0.616168 + . ID=CGI_10025960; scaffold334 WUBlastX DNA_Harbinger 707900 708046 36 + . . scaffold334 GLEAN mRNA 704564 710933 0.999675 - . ID=CGI_10025959; scaffold334 WUBlastX DNA_Harbinger 707900 708046 36 + . . scaffold334 GLEAN mRNA 704630 717663 0.616168 + . ID=CGI_10025960; scaffold410 WUBlastX DNA_Kolobok 649487 649576 28 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX DNA_Kolobok 396420 396629 77 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 368510 369193 98 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX DNA_Maverick 217344 217430 47 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX DNA_TcMar-Tc1 107359 107619 85 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_DIRS 121817 122020 83 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_DIRS 122035 122724 443 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_DIRS 122670 123248 385 - . . . . . -1 -1 -1 . . . scaffold1207 WUBlastX LINE_L1-Tx1 1377 3479 754 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_CR1-L2 164872 165087 106 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L1 599910 600890 274 + . . . . . -1 -1 -1 . . . C22212 WUBlastX LTR_Gypsy 611 1717 691 - . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LTR_Ngaro 172728 172922 83 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 172907 174247 851 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 176483 176677 83 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 176662 178002 851 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; C34174 WUBlastX LTR_Ngaro 1701 1856 45 + . . C34174 GLEAN mRNA 745 7629 0.544712 - . ID=CGI_10001232; scaffold1703 WUBlastX DNA_Harbinger 778539 778979 473 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Harbinger 779069 779365 239 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 281409 282935 201 - . . . . . -1 -1 -1 . . . scaffold1072 WUBlastX LINE_L1-Tx1 14639 16252 380 + . . . . . -1 -1 -1 . . . scaffold1072 WUBlastX LINE_L1-Tx1 16233 16748 394 + . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LTR_Gypsy-Cigr 72634 74505 985 + . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_L1-Tx1 13490 14218 136 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_L2 158552 158728 45 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 850064 850405 113 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold461 WUBlastX LINE_L2 292954 293055 27 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold481 WUBlastX LTR_Ngaro 1181046 1181354 104 + . . . . . -1 -1 -1 . . . C33378 WUBlastX LTR_Ngaro 10410 11252 58 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 200570 200734 41 + . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX LTR_DIRS 32979 33479 124 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_Crypton 887990 888412 120 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 741136 741975 90 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_Kolobok 15539 15787 129 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Kolobok 296173 296418 118 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LINE_L1 196298 197071 104 + . . . . . -1 -1 -1 . . . scaffold43364 WUBlastX LINE_L1-Tx1 17180 17551 86 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_Penelope 124576 124821 117 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Maverick 201088 201372 106 - . . . . . -1 -1 -1 . . . scaffold793 WUBlastX LINE_RTE-BovB 154024 154308 158 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Sola 1252876 1253001 74 - . . . . . -1 -1 -1 . . . C20808 WUBlastX LINE_L1-Tx1 464 991 74 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_L1-Tx1 397831 398250 126 + . . . . . -1 -1 -1 . . . scaffold1727 WUBlastX RC_Helitron 22227 23408 363 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 89468 90163 403 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_hAT-hATw 149985 150461 208 - . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 14311 14949 307 - . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LTR_Gypsy 18750 21713 744 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LTR_Pao 69189 69659 506 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_DIRS 303166 303441 124 + . . scaffold1403 GLEAN mRNA 301039 311460 0.999994 + . ID=CGI_10020166; scaffold1403 WUBlastX LTR_DIRS 303446 305377 912 + . . scaffold1403 GLEAN mRNA 301039 311460 0.999994 + . ID=CGI_10020166; scaffold42618 WUBlastX LTR_Gypsy 94099 94605 143 - . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_Gypsy 94656 95018 157 - . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_Gypsy 95159 95614 256 - . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_Gypsy 95608 96291 107 - . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_Gypsy 96429 96845 323 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 235329 236318 313 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_Merlin 572244 572684 153 + . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold387 WUBlastX LINE_L2 78375 78713 119 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L2 146514 146546 21 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_CR1 287608 287880 54 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Ngaro 641282 641350 30 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Ngaro 641320 641943 129 - . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX DNA_MuDR 86104 86388 35 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_Penelope 182773 183180 113 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX DNA_TcMar-Tc1 457527 457907 71 - . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX LINE_L1 196493 197026 125 + . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold867 WUBlastX LINE_CR1 480610 481140 92 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 702979 703170 35 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold36806 WUBlastX LINE_RTE-BovB 1094 1213 64 + . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LINE_RTE-BovB 1213 1479 81 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-X 47709 48578 84 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold1703 WUBlastX LINE_RTE-X 158223 158726 112 - . . . . . -1 -1 -1 . . . scaffold802 WUBlastX LINE_RTE-X 438013 438102 33 - . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX DNA_TcMar-Tc1 70581 70775 58 - . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 11591 11959 223 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold1209 WUBlastX DNA_Helitron 11707 12363 57 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Pao 254676 255440 255 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1-Tx1 733590 734675 575 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 225806 225997 117 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold209 WUBlastX LINE_L1-Tx1 34199 35170 340 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 35173 35958 344 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 36155 36652 234 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LTR_Gypsy 28722 29084 197 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LTR_Gypsy 29076 30026 466 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy 198623 199129 166 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 214148 214237 44 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 214304 214456 39 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 214501 214557 36 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 719645 719782 80 - . . . . . -1 -1 -1 . . . C35952 WUBlastX DNA_Helitron 1577 1981 154 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; C35952 WUBlastX DNA_Helitron 1983 2360 44 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold37900 WUBlastX DNA_IS4EU 31933 32226 61 - . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold4 WUBlastX DNA_IS4EU 219437 219595 25 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX DNA_IS4EU 219561 219896 118 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_Penelope 216082 216906 42 + . . scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold1585 WUBlastX LINE_RTE-X 67652 68137 99 + . . scaffold1585 GLEAN mRNA 47886 74932 0.392655 - . ID=CGI_10012588; scaffold43 WUBlastX LINE_L1-Tx1 466865 467641 26 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LINE_L1-Tx1 81480 81947 127 + . . scaffold97 GLEAN mRNA 72894 92330 0.60683 - . ID=CGI_10005686; scaffold527 WUBlastX LINE_L1-Tx1 309918 310061 38 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy 81609 83135 946 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold36034 WUBlastX LINE_L1-Tx1 11815 13533 1078 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Pao 407979 408200 80 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 408846 409445 36 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold406 WUBlastX LTR_Gypsy 135492 136523 586 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold998 WUBlastX LTR_Pao 1985 2044 26 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 849759 850046 81 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold42596 WUBlastX LINE_CR1 100580 101041 82 - . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX LINE_CR1 101055 101219 69 - . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX LINE_CR1 1237 1371 88 + . . . . . -1 -1 -1 . . . scaffold36862 WUBlastX DNA_En-Spm 5513 5956 148 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Ngaro 1245552 1245980 172 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Crypton 255026 255364 125 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX DNA_IS4EU 223134 223493 70 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX DNA_IS4EU 223960 224202 34 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX DNA_Harbinger 11204 11701 88 + . . . . . -1 -1 -1 . . . scaffold37740 WUBlastX DNA_NOF 8426 8923 136 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold1397 WUBlastX LTR_Ngaro 23130 24074 173 + . . scaffold1397 GLEAN mRNA 23367 24092 0.999994 + . ID=CGI_10017114; scaffold1397 WUBlastX LTR_Ngaro 23130 24074 173 + . . scaffold1397 GLEAN mRNA 22041 34038 0.684002 - . ID=CGI_10017113; scaffold1307 WUBlastX LINE_L1 189476 189781 33 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX LINE_RTE-X 111805 112161 75 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_RTE-BovB 227311 227478 109 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_RTE-X 869375 869917 110 - . . . . . -1 -1 -1 . . . scaffold39064 WUBlastX LINE_RTE-X 62579 62836 159 - . . . . . -1 -1 -1 . . . C32228 WUBlastX LTR_Copia 7774 8463 436 + . . . . . -1 -1 -1 . . . C32228 WUBlastX LTR_Copia 8406 9092 358 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 39440 39880 295 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Pao 1494385 1495410 1077 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L2 943732 944652 489 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L2 944652 945716 705 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 390223 390918 145 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Tip100 737492 737740 42 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Ngaro 42144 42536 190 - . . scaffold507 GLEAN mRNA 41380 65568 0.398486 - . ID=CGI_10019084; scaffold591 WUBlastX LTR_Ngaro 554794 555195 206 - . . . . . -1 -1 -1 . . . C23836 WUBlastX LTR_Ngaro 2146 2442 167 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Gypsy 325093 325569 195 - . . . . . -1 -1 -1 . . . scaffold715 WUBlastX LTR_Gypsy-Cigr 64940 65296 176 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX DNA_Harbinger 569867 570229 186 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_I 472986 473051 24 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX DNA_hAT-hATw 33489 34163 32 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-X 947083 947340 51 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LINE_RTE-X 92836 93024 27 + . . scaffold459 GLEAN mRNA 88021 99888 0.843454 + . ID=CGI_10018169; scaffold621 WUBlastX DNA_Academ 314683 315774 536 - . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 315804 316538 225 - . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 316984 317430 298 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX DNA_Academ 317387 317626 71 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX DNA_Academ 317641 318339 149 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX DNA_Academ 318345 318578 96 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 637254 637748 219 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1301 WUBlastX LTR_Pao 733670 734218 486 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy-Cigr 167923 169386 811 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold517 WUBlastX LTR_Pao 176167 176337 30 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LTR_Pao 179088 179786 272 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy 209104 209604 85 - . . scaffold723 GLEAN mRNA 194118 214562 0.999791 - . ID=CGI_10015263; scaffold109 WUBlastX LTR_Gypsy 72003 72584 145 - . . . . . -1 -1 -1 . . . scaffold43526 WUBlastX LTR_Pao 169066 169242 21 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_CR1 195807 195992 53 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_DIRS 512538 512936 198 + . . . . . -1 -1 -1 . . . scaffold707 WUBlastX DNA_Harbinger 48230 48385 79 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold885 WUBlastX DNA_Kolobok 12883 13128 105 + . . scaffold885 GLEAN mRNA 12934 13146 1 + . ID=CGI_10025186; scaffold885 WUBlastX DNA_Kolobok 12883 13128 105 + . . scaffold885 GLEAN mRNA 11627 19636 0.352613 - . ID=CGI_10025184; scaffold243 WUBlastX DNA_Kolobok 45931 46275 159 - . . scaffold243 GLEAN mRNA 45508 46823 0.518363 - . ID=CGI_10006814; scaffold42372 WUBlastX DNA_MuDR 86535 86894 159 + . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX LINE_Penelope 32526 32729 97 - . . . . . -1 -1 -1 . . . C34256 WUBlastX DNA_Kolobok 10842 11066 36 + . . C34256 GLEAN mRNA 10416 11159 1 + . ID=CGI_10001258; scaffold773 WUBlastX LINE_RTE-BovB 217728 218564 102 + . . . . . -1 -1 -1 . . . C27694 WUBlastX DNA_Maverick 2574 2687 66 - . . C27694 GLEAN mRNA 2532 3020 1 - . ID=CGI_10000376; scaffold3 WUBlastX DNA_Harbinger 1171 1398 113 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_CR1 517496 518449 599 + . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold90 WUBlastX DNA_Maverick 166868 167434 92 + . . . . . -1 -1 -1 . . . C31300 WUBlastX LTR_Gypsy 5150 5461 58 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy-Cigr 227111 227581 293 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 149542 149886 50 + . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 152547 152966 186 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX LTR_Pao 117505 117717 120 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_L2 144683 146959 1260 - . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold37 WUBlastX LINE_L2 118340 118618 24 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Kolobok 373550 373768 22 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Kolobok 373888 374142 95 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Kolobok 374339 374458 41 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Kolobok 374588 374746 44 + . . . . . -1 -1 -1 . . . scaffold38136 WUBlastX LINE_L1 28559 28879 50 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-BovB 164803 164970 122 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 205782 205958 99 - . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy-Troyk 38791 39294 145 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 58220 58351 20 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 175234 175806 333 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold412 WUBlastX LTR_Gypsy 307282 310647 1645 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1-L2 360828 361004 23 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L2 39081 39656 158 - . . scaffold288 GLEAN mRNA 38387 49127 0.651135 + . ID=CGI_10020657; scaffold58 WUBlastX LINE_L2 325828 326529 218 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 590171 590551 95 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 205719 205958 88 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 70185 70748 211 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_L1 435639 436601 113 - . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_RTE-X 3886 3945 31 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_RTE-X 373862 374410 156 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_TcMar-Tc1 103796 104005 82 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Pao 167215 168951 795 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Pao 405670 408018 1394 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold38284 WUBlastX LTR_Gypsy 30811 30975 94 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 36348 38288 1138 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 38279 39022 467 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Pao 24787 25308 28 + . . . . . -1 -1 -1 . . . scaffold1824 WUBlastX LTR_DIRS 96543 96980 143 + . . . . . -1 -1 -1 . . . scaffold998 WUBlastX LTR_Pao 1621 1980 219 - . . . . . -1 -1 -1 . . . C32106 WUBlastX LTR_Pao 8972 9238 35 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_CR1 1051798 1051860 22 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 147645 147872 26 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX DNA_IS4EU 403096 403779 164 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold392 WUBlastX LINE_Penelope 481316 481918 21 - . . . . . -1 -1 -1 . . . scaffold178 WUBlastX LINE_Penelope 104102 104359 96 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 104707 104865 70 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 104931 105107 48 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold1009 WUBlastX LTR_Ngaro 1344996 1345316 76 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 58890 59171 104 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 59171 59296 23 + . . . . . -1 -1 -1 . . . scaffold40196 WUBlastX DNA_TcMar-Marin 4441 4659 104 - . . . . . -1 -1 -1 . . . scaffold37680 WUBlastX LINE_RTE-X 459 1160 95 - . . . . . -1 -1 -1 . . . scaffold1506 WUBlastX LINE_RTE-X 48405 48746 87 - . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LTR_Gypsy 83524 84588 757 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 207338 208366 658 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 209277 209981 526 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 210440 211309 540 + . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 14539 14889 380 - . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 14903 15625 512 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_CR1-L2 223470 223682 47 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold491 WUBlastX LTR_Ngaro 20712 21191 166 - . . scaffold491 GLEAN mRNA 20441 25555 0.994918 - . ID=CGI_10006648; scaffold38904 WUBlastX LTR_Ngaro 22374 23183 148 + . . scaffold38904 GLEAN mRNA 21184 27002 0.495502 - . ID=CGI_10003048; scaffold36790 WUBlastX LTR_Ngaro 25324 25449 77 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold36790 WUBlastX LTR_Ngaro 25791 25865 56 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold962 WUBlastX LTR_Gypsy 140500 141372 196 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_TcMar-Marin 49987 50307 136 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 296001 296291 130 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX DNA_Harbinger 71696 72172 204 + . . . . . -1 -1 -1 . . . scaffold775 WUBlastX DNA_Harbinger 137763 138239 204 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX DNA_TcMar-Tc1 284512 284793 192 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1 547585 548379 80 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_RTE-X 352812 353453 144 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_RTE-X 173050 173688 192 - . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LTR_Gypsy-Cigr 203881 204627 200 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_L1-Tx1 297758 297901 44 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy-Cigr 106295 107275 783 + . . . . . -1 -1 -1 . . . scaffold42306 WUBlastX LINE_CR1 39604 40455 201 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LTR_Pao 224120 224482 183 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Pao 3 377 268 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Ngaro 877504 877737 89 + . . . . . -1 -1 -1 . . . scaffold38480 WUBlastX LTR_Ngaro 52602 52841 80 - . . scaffold38480 GLEAN mRNA 52810 53205 1 - . ID=CGI_10002772; scaffold1590 WUBlastX LTR_Gypsy 66952 67638 191 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_RTE-X 119356 120021 165 - . . . . . -1 -1 -1 . . . scaffold33842 WUBlastX LINE_L1-Tx1 9013 9231 42 - . . . . . -1 -1 -1 . . . scaffold1742 WUBlastX LTR_Copia 247244 248689 855 - . . . . . -1 -1 -1 . . . scaffold1742 WUBlastX LTR_Copia 249074 250054 639 - . . . . . -1 -1 -1 . . . scaffold1742 WUBlastX LTR_Copia 250068 251135 508 - . . . . . -1 -1 -1 . . . scaffold1881 WUBlastX LINE_CR1 136159 136884 47 + . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX LINE_L2 86311 86952 106 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_L2 456834 457931 188 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold9 WUBlastX LTR_Ngaro 87875 88117 97 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_L2 74116 74376 31 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 110691 111065 175 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_MuDR 18376 18594 26 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1 867636 867941 44 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L1-Tx1 385532 386203 24 - . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LINE_L1-Tx1 193588 194115 54 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1-Tx1 686876 687364 48 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1-Tx1 687293 687649 135 + . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Harbinger 104753 105265 192 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold1707 WUBlastX DNA_Sola 91336 91521 20 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1-Tx1 42339 42428 30 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 1417486 1418061 96 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 175725 176180 287 - . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold37944 WUBlastX DNA_MuDR 18611 19414 227 - . . . . . -1 -1 -1 . . . scaffold864 WUBlastX DNA_TcMar-Tc1 3140 3544 121 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 175805 176491 163 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_L1 366474 366647 85 + . . . . . -1 -1 -1 . . . scaffold1367 WUBlastX DNA_TcMar-Tc1 89683 90249 113 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_RTE-X 604970 605497 119 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_RTE-BovB 75655 76242 211 + . . scaffold43702 GLEAN mRNA 66519 92177 0.245591 - . ID=CGI_10011903; scaffold1476 WUBlastX LINE_RTE-X 172540 172662 73 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1041 WUBlastX LINE_RTE-X 310685 311566 188 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 16406 17767 457 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 13029 13406 298 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Academ 188571 188846 70 - . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_CR1-L2 47216 47671 91 - . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_RTE-X 657109 657576 124 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_RTE-X 657612 657821 51 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 465180 465308 79 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LTR_Ngaro 144993 145940 225 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_hAT-hATw 8682 9611 53 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LTR_Ngaro 115737 116750 187 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1 632150 632779 247 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 79767 80600 186 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 40639 41328 254 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_RTE-X 8919 10001 190 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Gypsy 12470 15361 2628 + . . . . . -1 -1 -1 . . . scaffold41974 WUBlastX LINE_RTE-BovB 30787 30930 79 + . . scaffold41974 GLEAN mRNA 275 36868 0.405305 - . ID=CGI_10005902; scaffold854 WUBlastX DNA_hAT-Tip100 640960 641073 52 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Harbinger 114025 114477 233 - . . scaffold42648 GLEAN mRNA 113950 114126 0.999968 - . ID=CGI_10007391; scaffold1427 WUBlastX DNA_Harbinger 104834 105268 215 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold38162 WUBlastX LTR_Gypsy 34999 36093 307 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Gypsy 264279 264617 39 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 229206 229781 114 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Maverick 525499 525675 50 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 1112769 1113905 484 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 1115555 1116163 507 + . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LTR_DIRS 333718 333807 22 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1046151 1046471 154 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1046470 1046697 175 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Kolobok-IS4 1158589 1158738 32 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold305 WUBlastX LINE_L1 140641 140901 74 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold550 WUBlastX LINE_L1-Tx1 61209 61301 55 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold880 WUBlastX LINE_L1-Tx1 579178 579669 60 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L1-Tx1 546474 547304 124 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L2 747198 747368 113 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_L2 747492 747641 75 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold4 WUBlastX LTR_DIRS 203260 203502 155 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 203508 203741 20 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_DIRS 557486 557746 80 - . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_Harbinger 202742 202855 131 + . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_Harbinger 203198 203380 126 + . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_Harbinger 203478 203672 49 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 104263 104451 114 + . . . . . -1 -1 -1 . . . scaffold41452 WUBlastX LINE_L2 62730 63119 191 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold415 WUBlastX LTR_Gypsy 73734 74135 62 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_CR1-L2 42202 42312 46 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Gypsy 921740 922240 251 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold508 WUBlastX LTR_Gypsy 15350 15850 251 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold36928 WUBlastX LINE_L1-Tx1 33456 33740 215 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_PiggyBac 611164 611556 84 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_En-Spm 51977 52183 45 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_En-Spm 53128 53721 162 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_L1 161758 162033 20 - . . scaffold911 GLEAN mRNA 159613 170351 0.499121 + . ID=CGI_10012141; scaffold1352 WUBlastX LTR_Gypsy 150397 150861 395 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_Harbinger 616333 616449 60 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616528 616860 169 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold908 WUBlastX DNA_Kolobok-IS4 36175 36453 106 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_L1-Tx1 5104 5349 41 + . . . . . -1 -1 -1 . . . scaffold1835 WUBlastX LINE_RTE-BovB 308120 309073 312 - . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LINE_RTE-BovB 127755 128516 333 + . . scaffold585 GLEAN mRNA 123270 129092 1 - . ID=CGI_10005544; scaffold1322 WUBlastX LTR_Ngaro 301070 301465 97 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold950 WUBlastX LINE_L1-Tx1 184205 184543 200 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1 979507 980130 110 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LTR_Gypsy 759036 759476 22 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 3446 3949 172 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 63684 64376 203 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_Gypsy 243484 243612 29 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1262 WUBlastX LTR_Gypsy-Cigr 544263 544541 172 + . . . . . -1 -1 -1 . . . C33024 WUBlastX LINE_L1 2711 2800 24 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_L1-Tx1 267593 267991 167 + . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_L1-Tx1 268110 268517 50 + . . . . . -1 -1 -1 . . . C27400 WUBlastX LINE_L1-Tx1 3287 4657 170 - . . . . . -1 -1 -1 . . . scaffold1335 WUBlastX LINE_Penelope 12674 13180 121 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold1335 WUBlastX LINE_Penelope 13183 13659 202 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold312 WUBlastX DNA_Maverick 43878 45398 232 - . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1-Tx1 110655 111728 222 + . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 17443 17568 23 - . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 17643 18416 347 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Ngaro 232540 232878 176 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Ngaro 232869 233324 165 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 159555 160244 206 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 147358 149031 230 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_TcMar-Tc1 103581 103757 81 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_TcMar-Tc1 103786 104427 283 + . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 465226 465306 41 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Maverick 203535 204182 371 + . . . . . -1 -1 -1 . . . scaffold29 WUBlastX LINE_RTE-X 14069 14260 88 + . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LINE_RTE-X 104587 105087 77 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LTR_Gypsy-Cigr 21725 21847 46 + . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LTR_Gypsy 254259 254633 99 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Gypsy 489218 490069 150 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold728 WUBlastX LINE_RTE-X 3129 3419 135 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_TcMar-Tc1 152662 153531 337 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 48291 48635 29 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 365117 365452 54 - . . . . . -1 -1 -1 . . . C36680 WUBlastX LINE_CR1 9988 10233 67 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 10593 10742 37 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold1740 WUBlastX LTR_Gypsy 116263 116931 438 + . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 185874 186452 198 - . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 187336 187401 23 - . . . . . -1 -1 -1 . . . C34116 WUBlastX DNA_IS4EU 16615 17148 426 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 84055 84108 34 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_RTE-X 167637 168707 188 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX DNA_TcMar-Tc1 77299 78000 327 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Gypsy-Cigr 540852 541313 147 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_L1-Tx1 383236 383841 244 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_L1-Tx1 383810 384049 149 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LTR_Gypsy 271066 271470 55 - . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_Kolobok-IS4 27408 28088 388 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold784 WUBlastX DNA_TcMar-Marin 908603 909262 241 - . . scaffold784 GLEAN mRNA 903046 922274 0.999676 + . ID=CGI_10024450; scaffold1737 WUBlastX DNA_TcMar-Marin 364520 364966 256 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LTR_Ngaro 127703 127912 110 + . . . . . -1 -1 -1 . . . scaffold932 WUBlastX LTR_DIRS 37685 38218 288 - . . . . . -1 -1 -1 . . . scaffold932 WUBlastX LTR_DIRS 38277 38654 129 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_TcMar-Tc1 836695 837180 219 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_TcMar-Tc1 837162 837512 80 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX DNA_TcMar-Tc1 121281 121811 149 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_L1-Tx1 355516 356340 115 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Gypsy 227367 227813 162 + . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 350300 350470 57 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_CR1 329956 330087 31 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_RTE-X 99407 99628 42 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_RTE-X 100506 100619 61 - . . . . . -1 -1 -1 . . . scaffold43522 WUBlastX LINE_L1-Tx1 117045 118226 217 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 480119 480514 101 - . . . . . -1 -1 -1 . . . scaffold1526 WUBlastX LTR_Pao 123466 125202 382 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 390864 390998 21 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_DIRS 136404 136859 77 + . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX LTR_Ngaro 1850 2455 276 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 619001 619831 191 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 619843 620670 190 - . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1-Tx1 163050 163496 86 - . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1-Tx1 164590 164823 35 - . . . . . -1 -1 -1 . . . C23922 WUBlastX LINE_L1-Tx1 1641 2441 409 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 11152 11373 179 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold139 WUBlastX DNA_hAT-Tip100 47434 47856 94 - . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LINE_CR1 21300 21704 122 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 229871 230629 490 + . . . . . -1 -1 -1 . . . scaffold37900 WUBlastX DNA_IS4EU 29598 30356 490 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold301 WUBlastX LINE_L1 909180 909236 47 + . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LTR_DIRS 108696 109610 414 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LINE_CR1-L2 401479 401724 27 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_L1-Tx1 146713 147087 156 + . . scaffold546 GLEAN mRNA 136572 153074 0.999871 - . ID=CGI_10020995; scaffold834 WUBlastX LTR_Gypsy 55765 56217 24 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_Penelope 593979 594944 470 - . . . . . -1 -1 -1 . . . scaffold41174 WUBlastX LINE_RTE-X 69401 69622 135 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold1318 WUBlastX DNA_TcMar-Tc1 21348 22310 453 - . . . . . -1 -1 -1 . . . scaffold33360 WUBlastX LINE_CR1-L2 1745 2125 143 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LINE_CR1 157808 159091 382 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX DNA_TcMar-Tc1 397029 397151 76 + . . scaffold942 GLEAN mRNA 390660 406366 0.734087 - . ID=CGI_10019170; scaffold1314 WUBlastX LINE_L1-Tx1 83845 84048 61 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_Pao 88129 88320 22 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy-Cigr 465630 467402 466 - . . . . . -1 -1 -1 . . . C35952 WUBlastX LTR_DIRS 18121 18708 285 + . . . . . -1 -1 -1 . . . C35952 WUBlastX LTR_DIRS 18708 18980 142 + . . . . . -1 -1 -1 . . . C35952 WUBlastX LTR_DIRS 18964 19167 48 + . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LTR_Ngaro 70689 71150 282 - . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LTR_Ngaro 71143 71307 91 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LINE_RTE-X 120055 120423 70 + . . . . . -1 -1 -1 . . . scaffold1643 WUBlastX LTR_Pao 183837 185672 469 + . . . . . -1 -1 -1 . . . scaffold37092 WUBlastX LINE_L1-Tx1 30037 30417 46 - . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX DNA_Kolobok 48204 49013 75 + . . scaffold1774 GLEAN mRNA 36391 50061 0.563353 + . ID=CGI_10006376; scaffold867 WUBlastX LTR_DIRS 549562 549786 24 + . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LTR_Gypsy-Cigr 24777 25109 46 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold1647 WUBlastX LTR_Gypsy 4931 5275 147 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy 210342 210437 43 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_DIRS 421856 422836 140 + . . . . . -1 -1 -1 . . . C27230 WUBlastX DNA_Maverick 3333 4436 526 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Gypsy 122136 123572 500 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold43986 WUBlastX LINE_L1 410552 411544 449 - . . . . . -1 -1 -1 . . . scaffold1184 WUBlastX LINE_L1 3 2024 364 - . . . . . -1 -1 -1 . . . scaffold42486 WUBlastX DNA_TcMar-Tc1 148449 149078 228 + . . scaffold42486 GLEAN mRNA 141403 154918 0.998251 - . ID=CGI_10006982; scaffold42486 WUBlastX DNA_TcMar-Tc1 149068 149301 165 + . . scaffold42486 GLEAN mRNA 141403 154918 0.998251 - . ID=CGI_10006982; scaffold42618 WUBlastX LTR_Gypsy 96372 96887 144 - . . . . . -1 -1 -1 . . . scaffold43184 WUBlastX LINE_RTE-BovB 5646 6062 247 + . . . . . -1 -1 -1 . . . C28632 WUBlastX LINE_CR1 4917 5756 611 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 107247 107639 124 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 516652 516966 92 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_RTE-BovB 949885 950397 357 + . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold43076 WUBlastX LTR_Gypsy 164074 164367 109 + . . . . . -1 -1 -1 . . . scaffold675 WUBlastX LTR_Gypsy 182504 183565 635 - . . . . . -1 -1 -1 . . . scaffold675 WUBlastX LTR_Gypsy 183938 184015 23 - . . . . . -1 -1 -1 . . . C26936 WUBlastX LTR_Gypsy 2271 3059 408 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold667 WUBlastX LTR_Gypsy 89456 89911 30 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Gypsy 224636 224734 23 + . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX DNA_Maverick 99903 100589 351 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold1670 WUBlastX DNA_En-Spm 507910 508857 602 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_Harbinger 144582 144836 31 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L1-Tx1 50691 51872 127 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_L2 119549 119995 148 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_L2 119997 120260 89 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_L2 120208 121008 318 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 478080 478763 172 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold804 WUBlastX DNA_hAT-hATw 346185 348044 630 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Kolobok 3822 3989 91 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4175 4333 88 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4508 4747 122 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4834 5031 107 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 5250 5780 239 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold461 WUBlastX LTR_Gypsy 120905 121057 108 - . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_L1-Tx1 84654 84956 153 + . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_L1-Tx1 84891 85634 222 + . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_L1-Tx1 85616 86434 62 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Gypsy 254101 254334 35 - . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX LINE_CR1 141574 142674 686 - . . scaffold1119 GLEAN mRNA 133915 143385 0.654676 + . ID=CGI_10009604; scaffold1119 WUBlastX LINE_CR1 141574 142674 686 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold43280 WUBlastX LTR_Gypsy 170837 171073 21 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold102 WUBlastX LTR_Gypsy 673288 674454 646 + . . scaffold102 GLEAN mRNA 674182 674616 0.999999 + . ID=CGI_10028446; scaffold317 WUBlastX LTR_DIRS 487036 487842 48 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_L2 169035 169112 20 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Gypsy 14810 14968 21 - . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1 325128 325655 480 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy 125201 125794 535 - . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_RTE-X 113130 113546 159 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold36398 WUBlastX LTR_Gypsy 26474 27358 310 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_hAT 491703 491867 102 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 492737 492901 66 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 493213 493449 84 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 494087 494239 89 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 494582 494689 47 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 497569 497703 35 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold43764 WUBlastX LINE_RTE-X 41089 42516 646 - . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LINE_RTE-X 98685 99365 352 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-BovB 11935 12051 95 - . . . . . -1 -1 -1 . . . scaffold38400 WUBlastX LTR_DIRS 11361 11594 72 + . . . . . -1 -1 -1 . . . scaffold38400 WUBlastX LTR_DIRS 11638 11958 173 + . . . . . -1 -1 -1 . . . scaffold38400 WUBlastX LTR_DIRS 11966 12412 238 + . . . . . -1 -1 -1 . . . scaffold38400 WUBlastX LTR_DIRS 12418 12684 263 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_L1 214999 218310 366 + . . . . . -1 -1 -1 . . . C32272 WUBlastX LTR_Gypsy 10662 11216 547 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LTR_Ngaro 86389 87246 341 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LTR_Pao 945299 945712 154 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 113040 113693 294 + . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_L1-Tx1 114623 115375 220 - . . . . . -1 -1 -1 . . . C32578 WUBlastX LINE_L1-Tx1 10701 10928 143 + . . . . . -1 -1 -1 . . . C32578 WUBlastX LINE_L1-Tx1 10901 11191 116 + . . . . . -1 -1 -1 . . . C32578 WUBlastX LINE_L1-Tx1 11197 11331 51 + . . . . . -1 -1 -1 . . . C32578 WUBlastX LINE_L1-Tx1 11647 12006 354 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Gypsy 126140 126520 231 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold1058 WUBlastX LTR_Gypsy 42262 42738 44 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 165020 165262 116 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 165234 165845 337 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 166135 166860 308 + . . . . . -1 -1 -1 . . . scaffold1235 WUBlastX LTR_Gypsy 24589 25332 23 + . . scaffold1235 GLEAN mRNA 24706 26124 0.999999 + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 24589 25332 23 + . . scaffold1235 GLEAN mRNA 16837 34725 0.738057 - . ID=CGI_10011828; scaffold481 WUBlastX LINE_L2 1325545 1326450 335 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L2 1327335 1328243 308 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LTR_Gypsy 310499 310873 142 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 231028 231144 69 - . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 57383 57955 114 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 83903 84058 43 - . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LTR_Gypsy 27566 29164 849 - . . . . . -1 -1 -1 . . . scaffold37054 WUBlastX RC_Helitron 38567 40378 876 - . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX LINE_L1-Tx1 54448 55449 161 - . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX LINE_L1-Tx1 55431 55721 171 - . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX LINE_L1-Tx1 55807 56154 303 - . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX LINE_L1-Tx1 56157 56315 96 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_CR1-L2 164396 164965 170 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Sola 249045 249200 33 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Sola 249390 250007 299 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 265863 266864 457 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 267522 267875 46 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 89502 89990 160 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Pao 26669 26893 63 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 72148 72483 55 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_TcMar-Fot1 257590 257889 43 - . . scaffold102 GLEAN mRNA 251987 267295 0.910885 - . ID=CGI_10028430; scaffold43 WUBlastX LTR_Copia 92244 92399 21 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy-Cigr 29946 30500 49 + . . . . . -1 -1 -1 . . . scaffold42246 WUBlastX DNA_hAT 46676 46780 33 + . . scaffold42246 GLEAN mRNA 5727 48525 0.65558 + . ID=CGI_10006474; scaffold42246 WUBlastX DNA_hAT 47144 47350 47 + . . scaffold42246 GLEAN mRNA 5727 48525 0.65558 + . ID=CGI_10006474; scaffold576 WUBlastX LINE_L1 451786 451854 28 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Pao 28790 28936 66 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Pao 1098261 1098365 56 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Pao 910845 911096 92 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_CR1-L2 119171 119278 29 - . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_CR1-L2 16500 16721 63 + . . . . . -1 -1 -1 . . . scaffold993 WUBlastX LINE_L2 136167 136403 34 - . . . . . -1 -1 -1 . . . scaffold34574 WUBlastX LINE_L2 8542 8724 43 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L2 1071415 1071612 58 - . . . . . -1 -1 -1 . . . scaffold382 WUBlastX LINE_CR1 1867 1950 37 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX DNA_hAT-Tip100 470187 470270 26 + . . scaffold1541 GLEAN mRNA 469948 471973 0.864419 + . ID=CGI_10017901; scaffold1876 WUBlastX LTR_ERVL 98950 99015 23 - . . . . . -1 -1 -1 . . . C28260 WUBlastX LINE_RTE-BovB 4390 4473 46 + . . . . . -1 -1 -1 . . . C28260 WUBlastX LINE_RTE-BovB 4957 5010 25 + . . . . . -1 -1 -1 . . . scaffold36778 WUBlastX LTR_Gypsy 33215 33823 34 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 81943 82041 27 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy-Cigr 499152 499955 39 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 12828 13094 28 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 209150 209296 70 - . . scaffold1703 GLEAN mRNA 209003 209413 0.77673 - . ID=CGI_10023048; scaffold1888 WUBlastX LINE_L2 147517 147957 52 + . . scaffold1888 GLEAN mRNA 114572 148611 0.858074 + . ID=CGI_10013297; scaffold962 WUBlastX LINE_L2 1257576 1257959 37 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L2 1258285 1258395 22 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Ngaro 788953 789138 68 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX RC_Helitron 185101 185178 20 + . . . . . -1 -1 -1 . . . C32216 WUBlastX DNA_hAT-hATw 6219 6458 22 + . . C32216 GLEAN mRNA 4198 8009 0.78994 + . ID=CGI_10000865; scaffold100 WUBlastX DNA_hAT-Charlie 1008717 1009250 22 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX DNA_Harbinger 10247 10426 49 - . . scaffold352 GLEAN mRNA 9441 13919 0.738574 - . ID=CGI_10012242; scaffold1634 WUBlastX LTR_Gypsy 81321 81485 68 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX DNA_Harbinger 504887 505066 52 - . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX DNA_Harbinger 10395 10481 35 + . . . . . -1 -1 -1 . . . scaffold1524 WUBlastX DNA_Kolobok 179851 180009 51 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L1 405291 405680 65 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_L1 220398 220517 26 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Kolobok 293079 293225 26 - . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; C32054 WUBlastX DNA_Kolobok-Hyd 2934 2993 25 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_Kolobok-Hyd 245315 245641 34 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L1 126150 126734 44 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_L2 181629 181817 28 - . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX DNA_TcMar-Marin 195557 195640 48 + . . scaffold42948 GLEAN mRNA 186071 196987 0.150089 + . ID=CGI_10008236; scaffold1016 WUBlastX DNA_P 283942 284322 92 - . . scaffold1016 GLEAN mRNA 272595 292035 0.804509 - . ID=CGI_10016891; scaffold6 WUBlastX LINE_Penelope 121556 121660 29 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold557 WUBlastX LINE_RTE-BovB 147681 147866 57 - . . . . . -1 -1 -1 . . . scaffold42062 WUBlastX LINE_RTE-BovB 112289 112465 67 + . . . . . -1 -1 -1 . . . scaffold42568 WUBlastX LINE_RTE-BovB 157890 158027 69 - . . . . . -1 -1 -1 . . . scaffold39320 WUBlastX LINE_RTE-X 13535 13624 22 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-BovB 204681 204884 22 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold1080 WUBlastX DNA_En-Spm 263365 264198 25 - . . scaffold1080 GLEAN mRNA 255570 275608 0.591325 - . ID=CGI_10012678; scaffold266 WUBlastX DNA_Maverick 330819 330941 40 - . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LINE_RTE-X 129144 129392 41 + . . . . . -1 -1 -1 . . . scaffold487 WUBlastX LINE_RTE-X 484013 484210 41 - . . scaffold487 GLEAN mRNA 478464 485762 0.999375 + . ID=CGI_10017056; scaffold392 WUBlastX LINE_RTE-X 293486 293656 77 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LINE_RTE-X 5590 5958 84 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 238440 238634 24 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-X 486726 486959 57 - . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LTR_Gypsy 33911 34084 28 - . . scaffold116 GLEAN mRNA 33800 34222 1 - . ID=CGI_10009410; scaffold1149 WUBlastX DNA_TcMar-Tc1 674608 674772 43 + . . . . . -1 -1 -1 . . . scaffold661 WUBlastX LINE_CR1 29639 29728 28 + . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX LINE_CR1-L2 20691 20768 27 + . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX LINE_CR1-L2 20785 20940 52 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_CR1-L2 226327 226539 66 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX DNA_TcMar-Tc1 1288905 1288949 30 + . . . . . -1 -1 -1 . . . scaffold42366 WUBlastX DNA_hAT 71295 71453 88 + . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold39174 WUBlastX LTR_Gypsy 13151 13822 27 + . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_TcMar-Fot1 88207 88455 73 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Pao 204611 204745 37 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_DIRS 384822 385226 52 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Ngaro 113817 113945 37 - . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LTR_DIRS 88245 88679 95 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold393 WUBlastX LTR_Gypsy 57552 58208 95 + . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Gypsy 310110 310313 30 + . . scaffold1800 GLEAN mRNA 309587 323793 0.999996 + . ID=CGI_10016406; scaffold581 WUBlastX LTR_Gypsy 331319 331717 74 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_IS4EU 308063 308260 44 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_IS4EU 309195 309257 44 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_Penelope 89779 90312 38 - . . . . . -1 -1 -1 . . . scaffold227 WUBlastX LINE_Penelope 310125 310331 67 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 547284 547325 26 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_L1 179602 179853 58 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX DNA_Kolobok-Hyd 208049 208345 31 + . . scaffold853 GLEAN mRNA 204099 212863 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 208049 208345 31 + . . scaffold853 GLEAN mRNA 206619 210945 0.253956 + . ID=CGI_10017495; scaffold714 WUBlastX LINE_RTE-X 248414 248509 37 + . . scaffold714 GLEAN mRNA 247457 275977 0.677949 + . ID=CGI_10016643; scaffold601 WUBlastX LINE_RTE-X 834319 834705 77 + . . scaffold601 GLEAN mRNA 814190 834629 0.512568 + . ID=CGI_10026849; scaffold1868 WUBlastX LINE_RTE-X 144493 144900 53 - . . scaffold1868 GLEAN mRNA 144442 144990 0.993839 - . ID=CGI_10007983; scaffold1041 WUBlastX LINE_RTE-BovB 24076 24231 81 - . . . . . -1 -1 -1 . . . scaffold34694 WUBlastX LINE_RTE-BovB 4964 5128 85 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-X 220710 221078 30 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_Sola 198312 198773 49 + . . . . . -1 -1 -1 . . . scaffold285 WUBlastX LTR_DIRS 231521 232015 49 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_DIRS 29119 29502 41 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LTR_Gypsy-Cigr 68831 69166 21 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L1-Tx1 711517 711822 21 - . . . . . -1 -1 -1 . . . scaffold660 WUBlastX DNA_hAT-Tip100 201727 201969 102 + . . scaffold660 GLEAN mRNA 201436 201984 0.999661 + . ID=CGI_10013753; scaffold275 WUBlastX LTR_Gypsy 147827 148243 42 - . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_TcMar-Ant1 13487 13801 103 + . . scaffold37880 GLEAN mRNA 2966 17075 0.52423 - . ID=CGI_10002532; scaffold44064 WUBlastX LINE_CR1 215321 215455 51 + . . scaffold44064 GLEAN mRNA 201756 215782 0.297034 - . ID=CGI_10016763; scaffold40624 WUBlastX LINE_L2 1959 2303 41 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_L2 155533 156087 77 + . . . . . -1 -1 -1 . . . C23836 WUBlastX LINE_L2 637 1191 77 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 345338 345514 20 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold172 WUBlastX LTR_Gypsy 15798 15950 60 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold20 WUBlastX LTR_Gypsy 752667 753494 84 - . . scaffold20 GLEAN mRNA 752421 753041 1 - . ID=CGI_10023596; scaffold1794 WUBlastX LTR_Gypsy 606953 607129 106 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_En-Spm 29847 30188 100 - . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold70 WUBlastX LTR_DIRS 585479 586204 87 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_Jockey 170944 171150 35 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_IS4EU 217800 217949 30 - . . . . . -1 -1 -1 . . . scaffold39144 WUBlastX DNA_Harbinger 52833 53459 64 + . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LTR_Gypsy 55310 55417 21 + . . . . . -1 -1 -1 . . . scaffold33050 WUBlastX LTR_Gypsy 5590 6282 83 + . . . . . -1 -1 -1 . . . scaffold42076 WUBlastX DNA_Harbinger 5227 5478 44 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Tc2 360327 360500 85 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_Kolobok-Hyd 556961 557128 41 + . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold664 WUBlastX DNA_Kolobok-Hyd 558102 558305 52 + . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold265 WUBlastX LINE_L1-Tx1 13690 13887 27 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1 574468 574809 74 + . . scaffold43 GLEAN mRNA 558255 582492 0.807709 - . ID=CGI_10021361; scaffold286 WUBlastX LINE_L1 205232 205339 25 + . . . . . -1 -1 -1 . . . scaffold38908 WUBlastX LINE_L1-Tx1 49312 49785 26 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_L1 140055 140321 45 - . . . . . -1 -1 -1 . . . C22998 WUBlastX LINE_L1 1 120 60 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_Penelope 40170 40718 35 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_Penelope 354890 355327 43 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX DNA_TcMar-Marin 232271 232372 63 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Marin 726602 726835 47 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_RTE-BovB 15264 15599 77 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold579 WUBlastX LINE_RTE-BovB 268089 268334 74 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold728 WUBlastX LINE_RTE-X 230163 230486 25 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_RTE-X 852585 852908 20 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_RTE-X 505588 505731 58 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX LINE_RTE-X 506053 506301 28 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold42840 WUBlastX LINE_RTE-X 25140 25316 87 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_RTE-X 136101 136343 74 - . . scaffold783 GLEAN mRNA 131104 140635 0.99762 + . ID=CGI_10011677; scaffold24070 WUBlastX LTR_DIRS 1777 1920 87 - . . . . . -1 -1 -1 . . . scaffold24070 WUBlastX LTR_DIRS 2118 2192 25 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1 394929 395378 64 - . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LTR_Gypsy 459909 460676 71 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 187617 188204 76 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold1889 WUBlastX LINE_RTE-X 207440 207661 88 + . . scaffold1889 GLEAN mRNA 199666 208024 0.836613 - . ID=CGI_10019608; scaffold1895 WUBlastX LINE_L1-Tx1 22871 23146 64 + . . scaffold1895 GLEAN mRNA 10144 35398 0.383689 - . ID=CGI_10010969; scaffold939 WUBlastX LINE_L1-Tx1 53907 54377 43 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LTR_Gypsy 9 371 71 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_CR1-L2 41228 41563 37 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_L2 91125 91754 48 - . . . . . -1 -1 -1 . . . scaffold37386 WUBlastX LINE_L2 35010 35333 94 - . . . . . -1 -1 -1 . . . scaffold32160 WUBlastX LTR_Pao 586 723 47 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_CR1-L2 656893 657156 92 - . . scaffold1188 GLEAN mRNA 648038 660238 0.573951 - . ID=CGI_10025493; scaffold332 WUBlastX LINE_CR1 626685 626804 23 + . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX LTR_Ngaro 345738 345977 98 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_L2 88944 89375 84 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L2 133738 134052 67 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_DIRS 119397 119756 30 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Ngaro 125024 125329 81 + . . scaffold412 GLEAN mRNA 49163 134272 0.261275 - . ID=CGI_10018559; scaffold37148 WUBlastX LINE_RTE-BovB 28863 29117 58 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold41700 WUBlastX DNA_Harbinger 40697 40795 44 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Harbinger 284736 285125 50 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold1154 WUBlastX DNA_Kolobok-IS4 300308 300589 69 - . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold535 WUBlastX DNA_IS4EU 2812 3006 28 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 3753 3890 59 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold631 WUBlastX DNA_TcMar-Tc1 72498 72788 86 - . . . . . -1 -1 -1 . . . scaffold634 WUBlastX DNA_TcMar-Marin 8384 8686 74 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LTR_Ngaro 790672 791043 75 - . . . . . -1 -1 -1 . . . scaffold114 WUBlastX LTR_Ngaro 4230 4592 99 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 245049 245132 48 + . . . . . -1 -1 -1 . . . scaffold1622 WUBlastX LINE_Penelope 2429 3061 62 + . . . . . -1 -1 -1 . . . scaffold809 WUBlastX LINE_Penelope 82421 82534 35 + . . . . . -1 -1 -1 . . . C32318 WUBlastX LINE_L1 7548 7802 93 - . . C32318 GLEAN mRNA 2480 10983 0.999998 + . ID=CGI_10000883; scaffold619 WUBlastX LINE_RTE-X 659713 659994 90 + . . . . . -1 -1 -1 . . . scaffold1745 WUBlastX LINE_RTE-X 79241 79411 93 - . . scaffold1745 GLEAN mRNA 77513 92057 0.437746 + . ID=CGI_10005405; scaffold1438 WUBlastX LINE_RTE-X 36494 36835 75 + . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_RTE-X 86304 86513 97 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold580 WUBlastX LINE_RTE-X 6308 6685 42 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_ERV1 81823 81972 20 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Maverick 48057 48251 97 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Maverick 435834 436334 81 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_RTE-X 12224 12391 88 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 313015 313662 102 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_Sola 38508 38978 30 - . . scaffold43182 GLEAN mRNA 25821 44165 0.795977 + . ID=CGI_10009197; scaffold43136 WUBlastX DNA_hAT-Tip100 41943 42182 76 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LINE_CR1-L2 151639 152259 21 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_L2 128195 128629 84 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LINE_CR1-L2 459248 459541 118 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LINE_CR1-L2 134285 134710 70 + . . scaffold670 GLEAN mRNA 126176 136910 0.999932 + . ID=CGI_10007410; scaffold1052 WUBlastX LINE_L2 75143 75502 109 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold99 WUBlastX LINE_L2 610600 610878 49 - . . scaffold99 GLEAN mRNA 591642 622309 0.948988 + . ID=CGI_10021214; scaffold99 WUBlastX LINE_L2 610600 610878 49 - . . scaffold99 GLEAN mRNA 601112 622168 1 - . ID=CGI_10021215; scaffold398 WUBlastX LINE_L2 4767 4877 20 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold1736 WUBlastX LINE_L2 528705 529133 42 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_L2 159365 159628 78 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 90266 90421 23 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 90498 90776 47 + . . . . . -1 -1 -1 . . . C32714 WUBlastX LTR_Gypsy 8835 9284 89 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L2 67451 67630 36 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_hAT-Ac 57533 57994 104 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 231620 231802 56 + . . scaffold873 GLEAN mRNA 230650 233202 0.99998 + . ID=CGI_10014424; scaffold917 WUBlastX DNA_Harbinger 155058 155315 21 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold33618 WUBlastX LTR_Gypsy 3538 3801 32 + . . . . . -1 -1 -1 . . . scaffold1107 WUBlastX LINE_L1 42599 42946 80 - . . scaffold1107 GLEAN mRNA 25384 68274 0.797312 + . ID=CGI_10004768; scaffold1362 WUBlastX LINE_L1-Tx1 582129 582242 47 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_L1-Tx1 582524 582697 21 - . . . . . -1 -1 -1 . . . scaffold369 WUBlastX LINE_Penelope 161507 161893 31 + . . scaffold369 GLEAN mRNA 147278 163434 0.70167 + . ID=CGI_10006958; scaffold58 WUBlastX DNA_TcMar-Fot1 427030 427929 109 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LINE_Penelope 30551 30676 44 + . . . . . -1 -1 -1 . . . scaffold975 WUBlastX DNA_NOF 293025 293549 39 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-BovB 448212 448547 64 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-BovB 52577 53155 47 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 1225 1449 81 - . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LINE_RTE-X 143512 143784 56 - . . scaffold43258 GLEAN mRNA 134740 154295 0.483992 + . ID=CGI_10009634; scaffold313 WUBlastX LINE_RTE-X 676652 676702 47 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_hAT-Tip100 122778 123119 61 - . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_DIRS 222977 223192 60 - . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_DIRS 223683 223841 37 - . . . . . -1 -1 -1 . . . scaffold35336 WUBlastX DNA_TcMar-Tc1 10746 10817 42 - . . . . . -1 -1 -1 . . . scaffold35336 WUBlastX DNA_TcMar-Tc1 10966 11064 25 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1-Tx1 193069 193398 102 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1819 WUBlastX LINE_L1-Tx1 176042 176200 75 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 390261 390614 93 + . . . . . -1 -1 -1 . . . scaffold38372 WUBlastX LINE_L2 52771 53079 52 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_CR1-L2 538365 538814 39 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L2 908083 908622 73 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 21130 21171 23 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Ngaro 312422 312622 67 + . . . . . -1 -1 -1 . . . scaffold42486 WUBlastX DNA_Academ 153670 153948 44 - . . scaffold42486 GLEAN mRNA 141403 154918 0.998251 - . ID=CGI_10006982; scaffold617 WUBlastX LTR_DIRS 62124 62525 46 - . . . . . -1 -1 -1 . . . scaffold27 WUBlastX LTR_Gypsy 58188 58745 105 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-BovB 148635 148769 50 + . . . . . -1 -1 -1 . . . scaffold36202 WUBlastX LTR_Gypsy 28683 28991 60 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 98086 98208 33 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold1640 WUBlastX DNA_TcMar-Marin 2341 2934 81 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 543567 543662 41 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_IS4EU 64040 64144 55 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold42448 WUBlastX LINE_L1 24319 24666 33 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 218922 219092 98 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 219206 219328 48 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LINE_RTE-BovB 199537 199767 121 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 544320 544637 54 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 234359 234550 26 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 208567 209007 125 - . . . . . -1 -1 -1 . . . C28316 WUBlastX DNA_Sola 460 735 48 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_Sola 44720 44827 21 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_Sola 43490 43735 124 - . . . . . -1 -1 -1 . . . scaffold40094 WUBlastX DNA_Zator 63816 64013 74 - . . scaffold40094 GLEAN mRNA 58391 65550 1 + . ID=CGI_10003842; scaffold40094 WUBlastX DNA_Zator 64172 64255 30 - . . scaffold40094 GLEAN mRNA 58391 65550 1 + . ID=CGI_10003842; scaffold280 WUBlastX LINE_CR1 631631 631936 90 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_CR1-L2 35949 36419 95 + . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_CR1-L2 78395 78772 84 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_CR1-L2 35949 36200 132 + . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LINE_L2 88290 88916 51 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_L2 126925 127161 33 + . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LINE_L2 231753 232169 26 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LTR_Gypsy 134499 134624 28 + . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LTR_Gypsy 134558 135220 111 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Ngaro 83392 83553 50 - . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LTR_Ngaro 130374 130607 51 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Gypsy 918587 919105 91 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_Harbinger 7244 7513 97 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_hAT-Tip100 281997 282299 93 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX DNA_Helitron 431834 432319 136 - . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX DNA_Helitron 71693 72241 114 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX DNA_TcMar-Marin 231975 232172 43 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX DNA_Kolobok 231620 231805 65 - . . scaffold236 GLEAN mRNA 231446 232793 0.958487 - . ID=CGI_10018140; scaffold383 WUBlastX LINE_RTE-BovB 737233 737682 37 + . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_RTE-X 159377 159739 71 - . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_L1-Tx1 43920 44042 49 + . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_L1-Tx1 44486 44533 23 + . . . . . -1 -1 -1 . . . scaffold1781 WUBlastX LINE_L1-Tx1 105637 105762 20 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_L1-Tx1 517439 517660 40 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold980 WUBlastX LINE_CR1-L2 227935 228249 86 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_Jockey 104173 104952 32 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Gypsy 170958 171701 80 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy 30245 30553 129 + . . scaffold583 GLEAN mRNA 11252 30786 0.538908 + . ID=CGI_10023603; C30176 WUBlastX DNA_Harbinger 5217 5273 24 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_TcMar-Tc1 440552 441142 134 - . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold351 WUBlastX LTR_ERV1 184943 185146 20 - . . scaffold351 GLEAN mRNA 182214 186264 0.847521 + . ID=CGI_10022595; scaffold43598 WUBlastX LINE_RTE-X 124559 124738 25 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_RTE-X 125600 125875 21 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Sola 143977 144135 46 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold35154 WUBlastX LINE_CR1 5407 5736 55 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_CR1 1043385 1043633 21 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold18 WUBlastX DNA_hAT-Tip100 2487 2594 44 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Pao 300127 300384 163 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy 715804 716106 152 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 133603 133701 69 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_hAT-hATw 266973 267161 64 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_Harbinger 99846 100181 109 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Gypsy 572275 572397 31 + . . scaffold980 GLEAN mRNA 571438 573129 0.991145 + . ID=CGI_10019247; scaffold257 WUBlastX LTR_Gypsy 429373 429495 31 - . . scaffold257 GLEAN mRNA 408517 430332 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_Gypsy 429373 429495 31 - . . scaffold257 GLEAN mRNA 415447 429822 0.479397 + . ID=CGI_10027911; scaffold288 WUBlastX LTR_Gypsy 598102 598224 31 - . . scaffold288 GLEAN mRNA 597379 599061 0.999238 - . ID=CGI_10020682; scaffold1647 WUBlastX DNA_Kolobok 166547 166867 65 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX DNA_Kolobok 132676 132795 56 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Ngaro 13777 13863 56 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1 235674 235853 24 - . . . . . -1 -1 -1 . . . C26402 WUBlastX LINE_L1 3475 3726 137 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_L1 70610 70711 20 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1 198661 198738 74 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-BovB 395436 395897 73 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 48326 48583 103 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_RTE-X 117521 118393 89 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX DNA_Sola 39477 40019 74 + . . scaffold924 GLEAN mRNA 39924 42016 0.322694 + . ID=CGI_10006838; scaffold924 WUBlastX DNA_Sola 40732 40965 34 + . . scaffold924 GLEAN mRNA 39924 42016 0.322694 + . ID=CGI_10006838; scaffold192 WUBlastX DNA_Sola 30189 30584 78 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX DNA_Sola 18805 19200 78 - . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_RTE-X 78754 79116 91 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_L2 580266 581072 72 + . . scaffold115 GLEAN mRNA 575453 585479 0.845977 + . ID=CGI_10021407; scaffold248 WUBlastX LTR_Gypsy 114589 114723 24 - . . . . . -1 -1 -1 . . . scaffold1675 WUBlastX LTR_DIRS 10382 10864 58 - . . scaffold1675 GLEAN mRNA 745 11817 0.679204 - . ID=CGI_10001288; scaffold38854 WUBlastX LTR_Gypsy 31547 31867 151 + . . scaffold38854 GLEAN mRNA 27679 32695 0.651134 - . ID=CGI_10003012; scaffold578 WUBlastX DNA_Kolobok 22242 22397 48 + . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold41346 WUBlastX DNA_TcMar-Marin 18266 18883 63 - . . scaffold41346 GLEAN mRNA 15464 31699 0.862252 + . ID=CGI_10004998; scaffold41834 WUBlastX DNA_Maverick 42172 42357 77 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_RTE-X 175180 175599 125 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_DIRS 13941 14297 162 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 525751 525957 108 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 526000 526911 193 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 126426 127274 420 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 127298 128113 427 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Gypsy 157424 160504 580 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 528651 528785 27 + . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LTR_Gypsy 12280 13788 987 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; C25486 WUBlastX LTR_Gypsy 565 1266 484 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Ngaro 356606 358066 978 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_Maverick 343329 343637 187 - . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L1-Tx1 11375 12607 694 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX DNA_Academ 316211 316969 149 - . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 317659 318882 48 - . . . . . -1 -1 -1 . . . C22212 WUBlastX LTR_Gypsy 7 609 354 - . . . . . -1 -1 -1 . . . C32054 WUBlastX LTR_Gypsy 125 814 191 + . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LINE_L2 459308 459538 141 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_CR1-L2 380657 380782 23 + . . scaffold412 GLEAN mRNA 380663 381094 0.999998 + . ID=CGI_10018577; scaffold1532 WUBlastX LTR_Gypsy 645399 646238 73 - . . . . . -1 -1 -1 . . . C35282 WUBlastX LTR_Gypsy 1406 1957 123 + . . C35282 GLEAN mRNA 1142 2704 0.999228 + . ID=CGI_10001456; C31978 WUBlastX LTR_Gypsy 9 425 183 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy 285136 285666 50 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_DIRS 147942 148220 110 + . . . . . -1 -1 -1 . . . C25792 WUBlastX LTR_Ngaro 2266 3039 112 + . . . . . -1 -1 -1 . . . C33172 WUBlastX LTR_Ngaro 12672 13289 68 + . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LTR_Gypsy 3483 3593 34 - . . . . . -1 -1 -1 . . . C34110 WUBlastX DNA_IS4EU 16598 16936 109 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX DNA_IS4EU 526054 526491 94 - . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_IS4EU 526054 526491 94 - . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold1104 WUBlastX DNA_IS4EU 526457 526663 70 - . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_IS4EU 526457 526663 70 - . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold1164 WUBlastX DNA_TcMar-Tc1 79134 79247 40 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_Penelope 93477 93617 41 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; C31070 WUBlastX DNA_Maverick 19 243 159 - . . . . . -1 -1 -1 . . . scaffold1468 WUBlastX LINE_RTE-X 147137 147673 73 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_RTE-X 213423 213848 80 - . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_RTE-X 65798 65881 22 - . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LINE_RTE-X 139782 139922 83 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_L1-Tx1 129879 130352 136 - . . scaffold162 GLEAN mRNA 125039 158542 0.510942 - . ID=CGI_10014090; scaffold35070 WUBlastX DNA_PiggyBac 10870 11037 90 + . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LTR_Pao 301522 301848 228 - . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LINE_RTE-BovB 40327 40548 116 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LINE_RTE-BovB 40556 41248 172 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LINE_RTE-BovB 41143 41697 234 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LINE_RTE-BovB 41855 41935 47 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LINE_RTE-BovB 42201 42383 31 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_RTE-X 406279 406971 105 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_RTE-X 408115 409191 349 + . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX LINE_CR1-L2 461088 461759 402 + . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX LINE_CR1-L2 462806 463096 132 + . . . . . -1 -1 -1 . . . scaffold43170 WUBlastX DNA_Zator 116007 116393 86 - . . scaffold43170 GLEAN mRNA 109769 118628 0.999676 - . ID=CGI_10009102; scaffold43170 WUBlastX DNA_Zator 116007 116393 86 - . . scaffold43170 GLEAN mRNA 114474 133457 0.997994 + . ID=CGI_10009103; scaffold43170 WUBlastX DNA_Zator 116499 118718 922 - . . scaffold43170 GLEAN mRNA 109769 118628 0.999676 - . ID=CGI_10009102; scaffold43170 WUBlastX DNA_Zator 116499 118718 922 - . . scaffold43170 GLEAN mRNA 114474 133457 0.997994 + . ID=CGI_10009103; scaffold1586 WUBlastX LTR_DIRS 32454 32573 109 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_L1-Tx1 144591 145736 812 + . . scaffold546 GLEAN mRNA 136572 153074 0.999871 - . ID=CGI_10020995; scaffold546 WUBlastX LINE_L1-Tx1 145730 146524 102 + . . scaffold546 GLEAN mRNA 136572 153074 0.999871 - . ID=CGI_10020995; scaffold107 WUBlastX LINE_L1-Tx1 531265 532071 538 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1-Tx1 532062 533429 395 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_RTE-X 394110 395795 560 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_RTE-X 395795 396193 107 - . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_CR1-L2 171677 171946 130 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_L2 142250 142552 49 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Pao 410 556 43 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Crypton 307122 307502 96 + . . . . . -1 -1 -1 . . . scaffold38736 WUBlastX LTR_Gypsy-Cigr 417 1016 144 - . . . . . -1 -1 -1 . . . scaffold38672 WUBlastX LTR_Gypsy 42226 42966 156 - . . . . . -1 -1 -1 . . . scaffold39334 WUBlastX LTR_Gypsy 47304 47873 120 - . . . . . -1 -1 -1 . . . scaffold39334 WUBlastX LTR_Gypsy 47914 47982 29 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX DNA_Harbinger 7118 7453 178 - . . scaffold695 GLEAN mRNA 4125 9096 0.716645 + . ID=CGI_10023266; scaffold99 WUBlastX LTR_Gypsy 264103 264177 20 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LTR_DIRS 265024 265686 141 + . . . . . -1 -1 -1 . . . scaffold43064 WUBlastX LINE_L1-Tx1 183814 184188 76 + . . scaffold43064 GLEAN mRNA 165128 188165 0.499838 + . ID=CGI_10008633; scaffold905 WUBlastX LINE_Penelope 61255 61860 87 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Marin 418392 418661 98 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX DNA_Maverick 7179 7403 122 + . . . . . -1 -1 -1 . . . C26040 WUBlastX LINE_RTE-X 1896 2150 26 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 375416 375580 28 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 376402 376809 26 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_R2-Hero 123888 124577 589 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_R2-Hero 124906 125541 383 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LTR_Gypsy 219651 219776 32 + . . . . . -1 -1 -1 . . . scaffold36118 WUBlastX LINE_RTE-X 7525 8961 603 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_L1-Tx1 701343 702983 615 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold101 WUBlastX LTR_Gypsy 569406 570398 722 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 570353 571675 435 - . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LTR_Pao 114491 114889 31 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 11265 11465 26 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LTR_Gypsy 61843 62247 73 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold750 WUBlastX LTR_Gypsy 445111 445584 176 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX DNA_Helitron 186002 186361 32 - . . . . . -1 -1 -1 . . . scaffold37252 WUBlastX DNA_IS4EU 5235 5723 89 + . . . . . -1 -1 -1 . . . scaffold31090 WUBlastX DNA_TcMar-Fot1 5597 5821 57 + . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LTR_Ngaro 32780 33271 178 - . . . . . -1 -1 -1 . . . scaffold40894 WUBlastX DNA_Kolobok 97251 98324 102 - . . scaffold40894 GLEAN mRNA 88006 100838 0.998256 - . ID=CGI_10004541; scaffold1329 WUBlastX LINE_L1 114121 114381 20 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L1-Tx1 202009 202638 142 - . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_RTE-X 85517 85687 23 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 85795 86067 21 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold896 WUBlastX LINE_RTE-X 70862 71272 92 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 196262 196861 306 + . . . . . -1 -1 -1 . . . scaffold39050 WUBlastX LINE_L1-Tx1 53161 53478 31 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 132648 133190 292 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_RTE-X 313050 313820 175 - . . scaffold753 GLEAN mRNA 307757 329663 0.499275 + . ID=CGI_10014210; scaffold350 WUBlastX DNA_Academ 965 1123 27 - . . scaffold350 GLEAN mRNA 1105 3206 0.996578 - . ID=CGI_10000780; scaffold40068 WUBlastX LINE_CR1 69900 70709 84 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_CR1 311877 312044 43 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold591 WUBlastX LINE_CR1-L2 71166 71396 20 - . . . . . -1 -1 -1 . . . scaffold1680 WUBlastX LTR_Gypsy-Cigr 69914 70450 209 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold592 WUBlastX LTR_Gypsy-Cigr 248134 248625 192 - . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX LINE_L2 140738 140806 21 - . . scaffold1119 GLEAN mRNA 133915 143385 0.654676 + . ID=CGI_10009604; scaffold670 WUBlastX DNA_IS4EU 87999 88373 129 + . . . . . -1 -1 -1 . . . scaffold1233 WUBlastX DNA_IS4EU 11448 11573 35 + . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold1233 WUBlastX DNA_IS4EU 12271 12381 31 + . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold1233 WUBlastX DNA_IS4EU 12573 12803 90 + . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold72 WUBlastX DNA_Kolobok 340536 340841 134 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Kolobok 341009 341248 58 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1 840067 840594 134 - . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-X 13520 13801 131 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_RTE-BovB 254607 255041 101 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_RTE-X 330355 330411 35 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LTR_DIRS 619037 619684 179 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 410097 411008 123 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 412534 412779 87 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy-Cigr 98537 98668 71 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy-Cigr 99242 99667 237 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Gypsy 223722 224372 63 + . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LTR_Gypsy 42057 43676 1348 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold43136 WUBlastX LTR_Gypsy-Cigr 106404 107909 931 + . . . . . -1 -1 -1 . . . C28006 WUBlastX LINE_CR1-L2 3392 3859 107 - . . . . . -1 -1 -1 . . . C27578 WUBlastX LINE_CR1-L2 5 412 149 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 756269 756889 50 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 757272 757475 91 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_DIRS 10319 10438 59 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_DIRS 10444 10581 26 + . . . . . -1 -1 -1 . . . C26206 WUBlastX LTR_Gypsy 747 1289 156 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_IS4EU 19279 19899 145 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_IS4EU 19893 20069 33 - . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX DNA_IS4EU 42083 42517 105 + . . . . . -1 -1 -1 . . . scaffold1639 WUBlastX DNA_Harbinger 35354 35710 103 + . . scaffold1639 GLEAN mRNA 27466 42582 0.863535 + . ID=CGI_10005437; scaffold35896 WUBlastX LINE_L2 25839 26030 21 - . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold378 WUBlastX LTR_Ngaro 313202 313309 50 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_Proto2 6492 6776 90 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-BovB 1569670 1569783 58 - . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_RTE-RTE 14038 14640 22 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 167478 167885 97 + . . . . . -1 -1 -1 . . . scaffold787 WUBlastX LINE_RTE-X 209596 210324 56 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 693885 694424 93 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Tc1 222666 222833 73 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX DNA_TcMar-Tc1 482015 482329 164 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LTR_Gypsy 94639 98031 1234 + . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 28733 29302 409 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 29299 29919 525 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 636442 636777 150 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold58 WUBlastX LTR_Gypsy 266542 266811 181 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 267113 267907 488 + . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LTR_Pao 542911 543000 53 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 542997 543143 80 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold531 WUBlastX LTR_Gypsy 330223 330348 60 - . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX DNA_Kolobok 232110 232649 122 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold1490 WUBlastX DNA_Harbinger 81092 81151 21 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LINE_L1-Tx1 52535 53182 108 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1-Tx1 1235806 1236363 75 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1-Tx1 1236380 1236571 22 - . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_L1-Tx1 191357 191989 130 + . . . . . -1 -1 -1 . . . scaffold1639 WUBlastX LINE_L1-Tx1 86340 86852 131 - . . . . . -1 -1 -1 . . . scaffold43038 WUBlastX LINE_RTE-X 97661 98347 109 - . . scaffold43038 GLEAN mRNA 85348 101738 0.999351 - . ID=CGI_10008443; scaffold43038 WUBlastX LINE_RTE-X 97661 98347 109 - . . scaffold43038 GLEAN mRNA 95367 105637 0.999027 + . ID=CGI_10008444; scaffold873 WUBlastX DNA_Maverick 175236 175598 101 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Maverick 175739 176086 99 + . . . . . -1 -1 -1 . . . scaffold31334 WUBlastX DNA_Sola 235 1062 182 + . . scaffold31334 GLEAN mRNA 85 1065 0.999996 + . ID=CGI_10000734; scaffold38006 WUBlastX RC_Helitron 355 522 56 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 316835 317230 144 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 318601 319908 47 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Gypsy-Cigr 1041085 1041990 619 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Gypsy-Cigr 1041986 1042408 165 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1-Tx1 114363 115325 409 + . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX LINE_CR1 36176 36604 34 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 244872 244988 32 + . . . . . -1 -1 -1 . . . scaffold465 WUBlastX LINE_L2 2213 2725 145 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 528642 529361 124 - . . . . . -1 -1 -1 . . . scaffold40270 WUBlastX LTR_Ngaro 3961 4329 178 - . . . . . -1 -1 -1 . . . scaffold41356 WUBlastX LTR_Ngaro 12733 13194 113 - . . scaffold41356 GLEAN mRNA 5844 20035 0.990026 - . ID=CGI_10004993; scaffold394 WUBlastX LTR_DIRS 436623 437234 201 + . . scaffold394 GLEAN mRNA 435520 450975 0.532272 + . ID=CGI_10022085; scaffold36598 WUBlastX LTR_Ngaro 31363 31503 110 - . . . . . -1 -1 -1 . . . scaffold36598 WUBlastX LTR_Ngaro 32488 32691 50 - . . . . . -1 -1 -1 . . . scaffold42032 WUBlastX DNA_Kolobok-IS4 140247 140543 94 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1 211828 212244 34 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold1315 WUBlastX LINE_L1-Tx1 26974 27405 49 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold1315 WUBlastX LINE_L1-Tx1 28433 28840 34 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold750 WUBlastX LINE_Penelope 130917 131252 64 + . . . . . -1 -1 -1 . . . scaffold38364 WUBlastX LINE_Penelope 3432 3920 199 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LINE_RTE-X 71729 72427 160 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold1652 WUBlastX LINE_RTE-X 244847 245326 68 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Gypsy-Cigr 494752 495288 165 + . . . . . -1 -1 -1 . . . scaffold1680 WUBlastX LTR_Gypsy 70847 73489 1247 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold43630 WUBlastX LTR_Gypsy-Cigr 275847 276224 77 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 846509 848443 1671 - . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LTR_Pao 25068 25307 33 + . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX LINE_RTE-X 219355 219813 57 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX LINE_RTE-X 220601 222988 813 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_Merlin 209653 209745 50 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_CR1 173011 173163 109 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_DIRS 70760 71404 143 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_DIRS 293647 293784 67 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Ngaro 440898 441719 146 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Ngaro 107629 108240 187 + . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX DNA_IS4EU 158668 159912 156 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-BovB 397821 397940 53 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold962 WUBlastX DNA_Maverick 385834 386133 119 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Maverick 210960 211325 220 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 849305 849739 146 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 359105 359227 54 + . . . . . -1 -1 -1 . . . C36028 WUBlastX LINE_RTE-X 28465 28848 51 + . . C36028 GLEAN mRNA 28396 30132 0.694438 + . ID=CGI_10001744; C36028 WUBlastX LINE_RTE-X 29041 30036 100 + . . C36028 GLEAN mRNA 28396 30132 0.694438 + . ID=CGI_10001744; scaffold1058 WUBlastX LINE_RTE-X 14281 14496 75 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LINE_L1-Tx1 3325 4173 175 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Pao 386091 386528 103 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Gypsy 379461 380024 185 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_CR1 487983 490145 1666 - . . . . . -1 -1 -1 . . . scaffold1371 WUBlastX LINE_CR1-L2 7643 7714 39 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_CR1-L2 44593 44670 20 - . . . . . -1 -1 -1 . . . scaffold33064 WUBlastX LINE_L1 5996 6757 162 - . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_L1 30843 31412 42 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 538532 539002 67 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 252450 252716 86 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L2 28765 29172 60 + . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_TcMar-Tc1 252414 253052 109 - . . scaffold1 GLEAN mRNA 239740 257002 0.998426 - . ID=CGI_10013473; scaffold1061 WUBlastX LINE_Proto2 109951 110397 31 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX DNA_TcMar-Tc1 67171 67371 78 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 274020 275144 708 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_CR1 201585 203600 1051 - . . . . . -1 -1 -1 . . . scaffold35598 WUBlastX LTR_Gypsy 6562 7605 893 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 549713 553234 1845 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold187 WUBlastX LTR_Ngaro 15802 15927 21 + . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LTR_Gypsy 5041 5700 226 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold670 WUBlastX DNA_IS4EU 87402 88286 183 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_Penelope 141140 141325 71 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-BovB 898151 899161 141 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold896 WUBlastX LINE_RTE-X 70871 71209 150 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Sola 804372 804992 180 + . . scaffold169 GLEAN mRNA 802679 805184 0.636202 + . ID=CGI_10022966; scaffold412 WUBlastX LINE_L2 398847 399458 158 + . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LINE_RTE-BovB 147564 147764 53 + . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LINE_RTE-BovB 146215 146607 69 + . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LINE_RTE-BovB 146972 147400 74 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 632628 632771 66 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 265898 266800 131 + . . . . . -1 -1 -1 . . . scaffold38558 WUBlastX LINE_L1-Tx1 56450 56971 134 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Gypsy 303673 306693 1802 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 58559 58642 42 + . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 59310 59429 47 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy 31253 31381 25 + . . scaffold38876 GLEAN mRNA 31001 32849 0.945662 + . ID=CGI_10003027; scaffold424 WUBlastX LTR_Gypsy 65069 65212 62 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX DNA_Sola 518710 519135 64 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy-Cigr 610026 611111 781 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy-Cigr 611122 612159 610 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_Crypton 460125 460685 98 - . . scaffold58 GLEAN mRNA 456330 469512 0.944736 - . ID=CGI_10023145; scaffold58 WUBlastX DNA_Crypton 460840 461019 78 - . . scaffold58 GLEAN mRNA 456330 469512 0.944736 - . ID=CGI_10023145; scaffold578 WUBlastX LTR_Gypsy 8292 8654 288 + . . . . . -1 -1 -1 . . . scaffold874 WUBlastX LINE_L1-Tx1 2707 3660 164 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_RTE-X 395686 396384 170 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX LINE_RTE-X 105065 105421 217 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold43150 WUBlastX LINE_RTE-X 105065 105421 217 + . . scaffold43150 GLEAN mRNA 104548 105093 1 + . ID=CGI_10009033; scaffold1009 WUBlastX LTR_DIRS 463032 463313 31 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LTR_Ngaro 70139 70789 108 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX DNA_TcMar-Tc1 264772 264939 71 + . . scaffold1098 GLEAN mRNA 223579 266249 0.353937 - . ID=CGI_10010798; scaffold721 WUBlastX LINE_L2 82922 83014 42 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold38378 WUBlastX LTR_Ngaro 49310 49486 60 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_RTE-X 95097 95564 131 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_RTE-X 95626 96117 20 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 101294 101470 113 - . . . . . -1 -1 -1 . . . scaffold40564 WUBlastX LINE_L1-Tx1 7416 7808 78 + . . scaffold40564 GLEAN mRNA 6674 28756 0.488599 + . ID=CGI_10004207; scaffold962 WUBlastX LINE_CR1-L2 863782 864516 220 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_CR1-L2 282904 283641 259 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_DIRS 990460 991068 245 - . . . . . -1 -1 -1 . . . scaffold43772 WUBlastX LTR_Ngaro 53376 54116 199 - . . . . . -1 -1 -1 . . . scaffold37408 WUBlastX LTR_DIRS 3652 4224 260 + . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 61302 62036 207 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LTR_Gypsy 222495 222542 29 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 110616 111023 135 - . . . . . -1 -1 -1 . . . scaffold223 WUBlastX DNA_Harbinger 283616 284398 226 + . . scaffold223 GLEAN mRNA 275585 285591 0.814847 - . ID=CGI_10012923; scaffold102 WUBlastX LINE_R2-Hero 1149339 1149926 256 - . . scaffold102 GLEAN mRNA 1142791 1154685 0.999233 - . ID=CGI_10028474; scaffold750 WUBlastX DNA_P 459010 459228 64 - . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_RTE-X 121234 121440 46 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 624940 625080 60 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_Maverick 825767 826063 72 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-X 753359 753982 235 + . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_RTE-X 95266 95325 24 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_Zator 701389 701640 104 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_Zator 701639 701791 98 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_hAT-Tip100 103132 103344 38 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_hAT-Tip100 103936 104457 111 + . . . . . -1 -1 -1 . . . scaffold38438 WUBlastX LTR_Pao 4562 5419 285 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_CR1 127494 127868 24 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold39640 WUBlastX RC_Helitron 7940 8173 52 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX RC_Helitron 8190 8303 20 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX RC_Helitron 8308 8523 145 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX RC_Helitron 8567 9565 289 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX RC_Helitron 9490 10836 776 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX RC_Helitron 10838 11218 210 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX RC_Helitron 11209 12783 836 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_CR1 275325 275654 116 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX RC_Helitron 167429 167938 216 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 597885 598208 98 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX DNA_Harbinger 655989 656222 108 - . . . . . -1 -1 -1 . . . scaffold292 WUBlastX DNA_TcMar-Marin 38110 38349 166 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold789 WUBlastX LINE_L1-Tx1 366538 367266 264 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 240847 242778 1465 - . . . . . -1 -1 -1 . . . scaffold36936 WUBlastX LTR_Pao 17375 17881 283 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold1819 WUBlastX LTR_Gypsy 73053 73247 21 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Harbinger 519009 519335 174 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 470805 471041 58 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX DNA_TcMar-Fot1 29778 30647 296 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-X 554075 554263 57 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold361 WUBlastX LINE_CR1-L2 441101 441346 115 - . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Harbinger 33540 33950 91 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Harbinger 34404 34553 48 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_L1 304878 305423 159 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_L1 305444 305791 141 - . . . . . -1 -1 -1 . . . C28510 WUBlastX DNA_Sola 2530 2763 30 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX DNA_TcMar-Tc1 256977 257477 82 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Pao 95659 96108 41 - . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_L2 16103 16288 87 - . . . . . -1 -1 -1 . . . scaffold1181 WUBlastX LINE_L2 109585 109911 68 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 256375 256581 84 - . . . . . -1 -1 -1 . . . scaffold37006 WUBlastX LTR_DIRS 26832 27212 245 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold150 WUBlastX LTR_Gypsy 80751 81518 79 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy 175437 175757 46 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 79745 80551 81 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 367654 368661 227 - . . scaffold102 GLEAN mRNA 367591 368589 0.999999 - . ID=CGI_10028433; scaffold43302 WUBlastX DNA_MuDR 3354 3656 82 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LTR_DIRS 201108 202025 284 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX DNA_En-Spm 91651 92721 292 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX DNA_Harbinger 23307 23684 93 + . . scaffold588 GLEAN mRNA 7475 24618 0.999942 + . ID=CGI_10016208; scaffold1711 WUBlastX DNA_IS4EU 333503 333628 50 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L1-Tx1 15669 16556 269 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1-Tx1 42414 43205 27 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1-Tx1 43213 43515 135 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1-Tx1 43515 43658 60 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 416347 416649 145 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold721 WUBlastX LTR_Ngaro 707242 707982 223 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_CR1-L2 754013 754432 161 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 216523 216864 99 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 73192 73506 163 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold784 WUBlastX LINE_RTE-X 50041 50202 120 - . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX LINE_RTE-X 1055 1735 178 - . . . . . -1 -1 -1 . . . C33730 WUBlastX LINE_L1-Tx1 14268 14633 188 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_L2 468256 469443 329 - . . . . . -1 -1 -1 . . . scaffold1881 WUBlastX LINE_L2 57731 58309 231 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Harbinger 735825 735941 42 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Harbinger 736477 736677 45 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 349260 349571 103 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 349577 350071 55 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_I-Nimb 63437 64015 38 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 268165 268626 320 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX DNA_Kolobok-IS4 97348 97539 47 - . . . . . -1 -1 -1 . . . scaffold34388 WUBlastX LINE_RTE-X 6542 6997 70 - . . . . . -1 -1 -1 . . . scaffold866 WUBlastX LINE_RTE-X 94615 94965 193 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_RTE-X 95025 95159 66 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_RTE-X 95287 95562 95 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_RTE-X 95666 95749 48 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold1228 WUBlastX LINE_L2 476604 476894 25 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold70 WUBlastX RC_Helitron 107411 107641 130 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 390339 390599 111 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 391406 391474 41 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 392198 392566 140 - . . . . . -1 -1 -1 . . . scaffold33050 WUBlastX DNA_NOF? 2109 2678 334 + . . . . . -1 -1 -1 . . . scaffold33050 WUBlastX DNA_NOF? 3043 3114 42 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 642712 643008 69 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1-Tx1 738161 738397 66 + . . . . . -1 -1 -1 . . . scaffold36362 WUBlastX DNA_hAT-Tip100 1468 1782 188 - . . . . . -1 -1 -1 . . . scaffold36362 WUBlastX DNA_hAT-Tip100 1802 2281 108 - . . . . . -1 -1 -1 . . . scaffold36362 WUBlastX DNA_hAT-Tip100 2284 2487 91 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_DIRS 51363 52499 293 - . . scaffold335 GLEAN mRNA 36330 53474 0.791399 - . ID=CGI_10017083; scaffold787 WUBlastX DNA_hAT-Blackja 233858 234856 365 - . . scaffold787 GLEAN mRNA 219328 253031 0.970021 - . ID=CGI_10011650; scaffold1715 WUBlastX LINE_Penelope 326707 327936 231 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold286 WUBlastX LINE_L1-Tx1 204032 204853 246 + . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LINE_RTE-X 41324 42403 306 + . . . . . -1 -1 -1 . . . scaffold617 WUBlastX LINE_RTE-X 115059 116297 227 - . . scaffold617 GLEAN mRNA 115032 115994 0.999999 - . ID=CGI_10012723; scaffold42568 WUBlastX LINE_RTE-BovB 12036 12113 22 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 1076422 1076622 32 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LTR_Pao 12516 12887 30 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX DNA_IS4EU 23399 23782 152 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX DNA_IS4EU 23770 24177 239 + . . . . . -1 -1 -1 . . . C27058 WUBlastX LTR_DIRS 3717 3806 32 + . . . . . -1 -1 -1 . . . scaffold914 WUBlastX LINE_RTE-X 55406 56443 241 + . . . . . -1 -1 -1 . . . scaffold215 WUBlastX LINE_RTE-BovB 155436 155600 29 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold184 WUBlastX DNA_Sola 233362 235209 280 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy 80614 80853 79 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold37712 WUBlastX LINE_CR1-L2 43226 44305 325 + . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_CR1-L2 40904 41437 402 + . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_CR1-L2 41925 43031 254 - . . scaffold1717 GLEAN mRNA 33205 46915 0.558386 + . ID=CGI_10013390; scaffold67 WUBlastX LTR_Ngaro 233526 234479 306 + . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LINE_RTE-X 167601 168767 322 - . . . . . -1 -1 -1 . . . C33496 WUBlastX LINE_RTE-X 4459 5013 28 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 398165 398896 95 + . . scaffold86 GLEAN mRNA 398522 403007 0.217037 + . ID=CGI_10028152; scaffold86 WUBlastX DNA_Academ 398939 399580 226 + . . scaffold86 GLEAN mRNA 398522 403007 0.217037 + . ID=CGI_10028152; scaffold86 WUBlastX LTR_Ngaro 1530784 1531752 374 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 308321 308740 213 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX DNA_Academ 132008 132319 137 + . . . . . -1 -1 -1 . . . scaffold711 WUBlastX DNA_hAT-Ac 183366 183494 41 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_RTE-X 555815 556027 79 + . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 18840 19646 302 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy 281346 281408 64 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_L1 175063 175500 50 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_Gypsy-Cigr 16342 16524 71 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy-Cigr 16848 17732 174 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; C28722 WUBlastX LINE_L2 4148 4681 248 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 280580 280660 21 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 364977 365174 74 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 365173 366387 135 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-X 869062 869517 117 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_Maverick 9630 9923 232 + . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_Maverick 10223 10558 203 + . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_L2 216512 217384 403 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold1823 WUBlastX LINE_L2 17914 18816 406 - . . scaffold1823 GLEAN mRNA 671 22392 0.99778 + . ID=CGI_10005168; scaffold121 WUBlastX LINE_CR1-L2 454957 455241 194 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_CR1-L2 455234 455971 230 - . . . . . -1 -1 -1 . . . scaffold41650 WUBlastX LINE_CR1-L2 4875 5015 68 - . . scaffold41650 GLEAN mRNA 2732 34982 0.998592 + . ID=CGI_10005337; scaffold1054 WUBlastX LTR_Ngaro 121815 122099 127 + . . . . . -1 -1 -1 . . . scaffold38952 WUBlastX LINE_Penelope 37211 38239 373 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Maverick 221083 222003 273 - . . scaffold1703 GLEAN mRNA 215396 234951 0.309503 + . ID=CGI_10023049; scaffold1221 WUBlastX LINE_RTE-BovB 600356 600529 93 - . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LINE_L1-Tx1 99791 99952 22 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold1710 WUBlastX LTR_Gypsy 83820 83978 41 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_L1-Tx1 33777 35078 294 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 39445 39690 52 + . . . . . -1 -1 -1 . . . C30224 WUBlastX LINE_L2 3586 4260 408 - . . . . . -1 -1 -1 . . . scaffold677 WUBlastX LTR_Pao 13 1608 400 - . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LTR_Ngaro 185 1102 444 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LTR_Ngaro 92550 93392 442 + . . scaffold509 GLEAN mRNA 91758 98346 0.858612 - . ID=CGI_10018642; scaffold1081 WUBlastX LTR_Gypsy 51831 52199 330 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 264382 264534 20 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 162604 162912 60 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 162983 163414 242 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1 802924 803031 34 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_Ngaro 324558 325535 415 - . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX DNA_TcMar-Tc1 165742 166722 416 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold1132 WUBlastX LINE_L1-Tx1 736340 736558 72 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1-Tx1 738074 738436 97 + . . . . . -1 -1 -1 . . . scaffold42766 WUBlastX DNA_hAT-Tip100 3338 4870 337 - . . scaffold42766 GLEAN mRNA 582 5602 0.982593 - . ID=CGI_10007660; C30862 WUBlastX DNA_hAT-hATw 1126 1239 25 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-X 408675 408917 133 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LINE_RTE-X 512588 513034 71 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 794647 795432 293 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1 336628 336978 174 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_L1 688407 688580 23 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold917 WUBlastX LINE_L2 95737 96348 230 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_Kolobok-IS4 58710 59600 447 - . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold1397 WUBlastX LINE_RTE-X 120698 121066 226 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 19603 19773 30 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold1772 WUBlastX LINE_RTE-X 360441 361838 169 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX LINE_L2 25901 26839 445 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 480811 481101 28 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX RC_Helitron 156933 158072 475 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 382562 382924 64 - . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX LINE_L1-Tx1 47880 48590 500 - . . scaffold41546 GLEAN mRNA 38795 60206 0.986293 + . ID=CGI_10005268; scaffold101 WUBlastX LINE_L1-Tx1 383305 384273 423 + . . . . . -1 -1 -1 . . . C22322 WUBlastX LINE_L1-Tx1 1459 1806 204 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_L1-Tx1 50132 50389 24 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold987 WUBlastX LTR_DIRS 84987 85763 425 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold43 WUBlastX DNA_IS4EU 2755 3594 349 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_IS4EU 3769 4080 96 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 766517 766720 38 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 994972 995865 390 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_L1-Tx1 499372 499584 49 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_DIRS 215999 217171 441 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold896 WUBlastX DNA_IS4EU 221243 222202 463 + . . . . . -1 -1 -1 . . . C33436 WUBlastX RC_Helitron 2140 3210 129 + . . . . . -1 -1 -1 . . . C33436 WUBlastX RC_Helitron 4016 4303 47 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1 186872 187324 101 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold1054 WUBlastX DNA_TcMar-Marin 20198 20602 217 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX DNA_TcMar-Tc1 217494 217652 117 + . . scaffold1521 GLEAN mRNA 212318 231130 0.482046 + . ID=CGI_10017939; scaffold619 WUBlastX LTR_Ngaro 921959 922558 339 + . . . . . -1 -1 -1 . . . C25652 WUBlastX LTR_Gypsy 237 1313 545 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 428491 429087 201 + . . . . . -1 -1 -1 . . . scaffold975 WUBlastX DNA_TcMar-Tc1 312732 313283 344 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_Sola 179236 180636 351 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 157664 157747 36 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_TcMar-Tc1 547874 548530 323 - . . . . . -1 -1 -1 . . . scaffold39274 WUBlastX LINE_CR1 28245 28739 348 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 106739 106867 81 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 108062 108235 128 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 701141 701275 76 - . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LTR_Gypsy 156101 156592 366 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LTR_Gypsy 157109 157267 47 + . . . . . -1 -1 -1 . . . scaffold1452 WUBlastX DNA_hAT-Ac 15245 16351 514 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy 125772 126770 213 - . . . . . -1 -1 -1 . . . scaffold41228 WUBlastX LINE_L1-Tx1 16862 18052 533 + . . scaffold41228 GLEAN mRNA 12628 43602 0.144447 - . ID=CGI_10004861; scaffold268 WUBlastX LINE_L1-Tx1 120397 121281 574 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 677707 678558 331 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 678573 678656 30 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 140572 140727 75 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX DNA_TcMar-Tc1 73062 73295 78 - . . scaffold1449 GLEAN mRNA 67747 83098 0.84051 + . ID=CGI_10010691; scaffold502 WUBlastX LTR_Gypsy 472855 473244 21 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 473613 473903 177 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 953893 954834 148 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Gypsy 124843 125334 140 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold41304 WUBlastX LTR_Ngaro 71255 72055 242 + . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX DNA_IS4EU 44539 44826 31 - . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX LTR_Gypsy 14043 14606 43 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold175 WUBlastX DNA_IS4EU 295488 296114 480 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_RTE-X 136193 136945 407 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-BovB 734805 735506 546 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-BovB 736019 736147 99 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Pao 754719 754952 84 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_RTE-X 214120 214368 24 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_RTE-X 215310 215723 240 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_L2 338419 338880 199 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 546512 547444 605 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_RTE-X 308200 308856 96 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 410799 411734 478 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold1651 WUBlastX LTR_Ngaro 127244 127615 199 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 584152 584460 199 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Ngaro 811573 812316 519 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Ngaro 812336 812674 153 - . . . . . -1 -1 -1 . . . scaffold39592 WUBlastX LINE_L2 43726 44562 499 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1072791 1073057 69 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073780 1074010 121 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074457 1074633 73 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074950 1075342 216 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold3 WUBlastX LTR_Gypsy 519322 519633 297 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 519642 520283 488 + . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX LTR_Gypsy 100544 100714 46 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_Sola 221940 222995 693 + . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX LINE_L1-Tx1 55937 56200 128 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 11805 12290 268 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_L2 190121 190666 408 - . . . . . -1 -1 -1 . . . C28702 WUBlastX LTR_Gypsy 5585 5824 160 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_RTE-X 773628 773876 173 - . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_RTE-BovB 71934 72053 44 + . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_RTE-BovB 72881 73762 252 + . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_RTE-BovB 74389 74826 245 + . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_RTE-BovB 74775 75131 131 + . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-X 79207 79824 151 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L1-Tx1 901416 901958 329 + . . . . . -1 -1 -1 . . . scaffold36390 WUBlastX LTR_Pao 30987 31022 22 + . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LINE_RTE-X 145812 147227 605 + . . . . . -1 -1 -1 . . . C30084 WUBlastX LINE_RTE-X 3535 4791 642 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 546469 547092 342 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX DNA_Academ 493935 494021 34 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX DNA_Academ 494023 494181 34 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 1043023 1043235 64 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold37944 WUBlastX LTR_Gypsy 14535 15383 112 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_L1-Tx1 410717 411547 699 - . . . . . -1 -1 -1 . . . scaffold1182 WUBlastX RC_Helitron 44520 45974 549 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 341859 343031 569 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 561570 561821 25 + . . . . . -1 -1 -1 . . . scaffold1296 WUBlastX LTR_Copia 297 572 66 + . . . . . -1 -1 -1 . . . scaffold1173 WUBlastX LTR_Gypsy 111903 111986 24 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX DNA_IS4EU 169350 170786 832 - . . scaffold748 GLEAN mRNA 165342 172077 0.999394 - . ID=CGI_10012643; C32536 WUBlastX LINE_RTE-X 40 1614 637 + . . . . . -1 -1 -1 . . . scaffold36758 WUBlastX LINE_L1-Tx1 20 2617 628 + . . . . . -1 -1 -1 . . . scaffold40 WUBlastX DNA_Academ 257378 258352 348 - . . scaffold40 GLEAN mRNA 252666 257460 0.323172 - . ID=CGI_10015106; C31762 WUBlastX LINE_CR1 8383 8430 30 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L1 249647 249946 26 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Merlin 1144455 1144688 80 - . . . . . -1 -1 -1 . . . scaffold39212 WUBlastX DNA_hAT-Tip100 53067 53282 69 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; C32176 WUBlastX LTR_Pao 7777 7932 26 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LTR_Ngaro 154389 154457 40 + . . . . . -1 -1 -1 . . . scaffold43692 WUBlastX LINE_CR1-L2 87658 87897 53 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_CR1 195783 195875 42 - . . . . . -1 -1 -1 . . . scaffold1811 WUBlastX LINE_L2 99172 99378 66 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_CR1-L2 95104 95142 27 - . . . . . -1 -1 -1 . . . scaffold38056 WUBlastX LINE_Rex-Babar 45547 45765 25 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L2 207908 208093 47 + . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L2 137958 138143 47 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_CR1 708450 708920 24 + . . scaffold168 GLEAN mRNA 708219 714400 0.999415 + . ID=CGI_10025607; scaffold168 WUBlastX LINE_CR1 708450 708920 24 + . . scaffold168 GLEAN mRNA 695564 710339 0.805022 - . ID=CGI_10025606; scaffold40952 WUBlastX LINE_CR1-L2 14123 14218 30 + . . . . . -1 -1 -1 . . . scaffold40952 WUBlastX LINE_CR1-L2 14241 14378 50 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 808118 808195 20 - . . . . . -1 -1 -1 . . . scaffold36118 WUBlastX LTR_Gypsy 1580 2278 47 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Ac 367203 367454 36 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 165579 165743 63 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy 79935 80495 54 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold664 WUBlastX LTR_Gypsy 493594 494001 49 - . . scaffold664 GLEAN mRNA 493536 494227 0.556615 - . ID=CGI_10021452; scaffold593 WUBlastX LTR_Gypsy-Cigr 135916 136398 20 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Ngaro 31357 31467 27 - . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_L2 224865 225116 42 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_L2 110967 111308 47 + . . . . . -1 -1 -1 . . . C35952 WUBlastX LINE_L2 3402 3497 20 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold1885 WUBlastX LTR_Gypsy 237458 238141 20 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L1-Tx1 1216532 1216723 31 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_IS4EU 234645 234860 32 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX RC_Helitron 795430 795582 46 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX RC_Helitron 754504 754827 50 + . . scaffold150 GLEAN mRNA 732546 756362 0.990752 + . ID=CGI_10028623; scaffold90 WUBlastX DNA_hAT-hAT5 185726 186346 56 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 123019 123069 20 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_Kolobok 230221 230433 69 - . . scaffold1525 GLEAN mRNA 230203 231272 0.866333 - . ID=CGI_10013864; scaffold162 WUBlastX LINE_L1 303485 303742 55 + . . . . . -1 -1 -1 . . . scaffold36928 WUBlastX LINE_L1-Tx1 35298 35327 20 + . . . . . -1 -1 -1 . . . scaffold43530 WUBlastX LINE_L1 208570 209178 56 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1 761883 762191 49 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_L2 175193 175270 27 + . . . . . -1 -1 -1 . . . scaffold37844 WUBlastX LINE_L2 35223 35267 20 + . . . . . -1 -1 -1 . . . scaffold35694 WUBlastX DNA_TcMar-Tc1 15986 16153 22 + . . . . . -1 -1 -1 . . . scaffold35694 WUBlastX DNA_TcMar-Tc1 16171 16311 33 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Penelope 151252 151413 34 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_Penelope 132214 132348 61 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX DNA_MuDR 489232 489345 31 - . . scaffold413 GLEAN mRNA 489088 490056 0.995102 - . ID=CGI_10022805; scaffold1189 WUBlastX LINE_RTE-X 577114 577422 48 - . . scaffold1189 GLEAN mRNA 568608 577407 0.997699 + . ID=CGI_10023823; scaffold1362 WUBlastX LINE_RTE-X 698106 698309 75 - . . scaffold1362 GLEAN mRNA 691736 715477 0.999895 - . ID=CGI_10023954; scaffold41834 WUBlastX LINE_RTE-X 114598 114861 41 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LINE_RTE-X 401620 401940 56 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_RTE-X 188027 188212 51 + . . . . . -1 -1 -1 . . . scaffold888 WUBlastX LINE_RTE-X 206769 206987 32 + . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_RTE-X 24492 24632 58 + . . scaffold36022 GLEAN mRNA 22203 29122 0.99999 - . ID=CGI_10001741; scaffold1104 WUBlastX LINE_RTE-X 336078 336227 69 - . . . . . -1 -1 -1 . . . scaffold194 WUBlastX LINE_RTE-X 195617 195796 43 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-X 1244633 1244743 24 + . . scaffold1301 GLEAN mRNA 1240763 1263950 0.99974 - . ID=CGI_10027768; scaffold1328 WUBlastX DNA_Maverick 26003 26392 61 - . . . . . -1 -1 -1 . . . C34726 WUBlastX DNA_Maverick 4044 4226 52 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_Maverick 209116 209256 79 - . . scaffold1832 GLEAN mRNA 208019 210157 0.999949 - . ID=CGI_10018469; scaffold1832 WUBlastX DNA_Maverick 209116 209334 66 - . . scaffold1832 GLEAN mRNA 208019 210157 0.999949 - . ID=CGI_10018469; scaffold30718 WUBlastX DNA_TcMar-Fot1 4082 4858 58 - . . . . . -1 -1 -1 . . . scaffold1745 WUBlastX LINE_RTE-X 79268 79489 66 - . . scaffold1745 GLEAN mRNA 77513 92057 0.437746 + . ID=CGI_10005405; scaffold1740 WUBlastX LINE_RTE-X 7989 8255 60 + . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LINE_RTE-X 106562 106690 56 - . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LINE_RTE-X 77816 77947 83 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_RTE-X 26772 27041 88 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX DNA_Harbinger 33056 33166 55 + . . . . . -1 -1 -1 . . . scaffold40598 WUBlastX DNA_Sola 53169 53330 67 + . . . . . -1 -1 -1 . . . scaffold40744 WUBlastX DNA_Sola 72891 73100 43 - . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX DNA_TcMar-Marin 98441 98707 28 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LTR_Ngaro 138860 139108 62 - . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy 38648 38926 69 + . . scaffold78 GLEAN mRNA 33688 45299 0.504298 + . ID=CGI_10006914; scaffold1179 WUBlastX LINE_L1-Tx1 939452 939559 89 - . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold1245 WUBlastX LINE_CR1-L2 18684 18785 55 + . . scaffold1245 GLEAN mRNA 8846 27165 0.999947 - . ID=CGI_10009218; scaffold58 WUBlastX LINE_CR1-L2 103926 104027 55 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LTR_Gypsy 169910 170086 33 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_CR1 750357 750473 21 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L2 578188 578484 24 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX DNA_Crypton 666067 666513 43 + . . scaffold54 GLEAN mRNA 665380 671765 0.174144 + . ID=CGI_10023688; scaffold41442 WUBlastX DNA_Crypton 23652 24143 76 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX DNA_Crypton 191976 192356 95 + . . scaffold386 GLEAN mRNA 191622 192813 0.986955 + . ID=CGI_10012688; scaffold630 WUBlastX LTR_DIRS 490240 490344 34 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Ngaro 116257 116370 87 - . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_Gypsy 9143 9280 28 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 550689 551312 86 + . . scaffold591 GLEAN mRNA 550671 550889 0.638045 + . ID=CGI_10027574; scaffold1316 WUBlastX DNA_Kolobok 96037 96225 50 - . . . . . -1 -1 -1 . . . scaffold596 WUBlastX DNA_Harbinger 1562 1726 76 - . . . . . -1 -1 -1 . . . C34116 WUBlastX LTR_Gypsy 2856 3206 60 - . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX RC_Helitron 211303 211839 32 + . . scaffold43676 GLEAN mRNA 211597 216385 0.756935 + . ID=CGI_10011734; scaffold525 WUBlastX DNA_IS4EU 62867 63034 20 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Foamy 372616 372939 81 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_I 1003111 1003851 21 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_ERV1 252418 252777 81 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold540 WUBlastX LINE_Penelope 49925 50314 64 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_TcMar-Fot1 54240 54806 29 - . . scaffold681 GLEAN mRNA 51586 54604 0.96497 + . ID=CGI_10014720; scaffold1882 WUBlastX LINE_L1 72010 72075 23 - . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_L1 154529 154654 20 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1-Tx1 129848 129916 20 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1 161372 161494 25 - . . . . . -1 -1 -1 . . . scaffold47 WUBlastX DNA_TcMar-Fot1 25905 26228 92 - . . scaffold47 GLEAN mRNA 20135 33676 0.999415 - . ID=CGI_10002504; C33864 WUBlastX LINE_Rex-Babar 1769 1876 27 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_TcMar-Tc1 842 1240 64 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_RTE-BovB 368115 368381 98 + . . . . . -1 -1 -1 . . . scaffold42380 WUBlastX LINE_RTE-X 92802 93017 53 - . . scaffold42380 GLEAN mRNA 82419 110422 1 + . ID=CGI_10006731; C12330 WUBlastX LINE_RTE-X 8 190 75 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LINE_RTE-X 99393 99623 45 - . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX LTR_Ngaro 122733 122897 72 - . . scaffold1656 GLEAN mRNA 116802 126372 0.949613 - . ID=CGI_10006145; scaffold1656 WUBlastX LTR_Ngaro 122947 123090 28 - . . scaffold1656 GLEAN mRNA 116802 126372 0.949613 - . ID=CGI_10006145; scaffold35198 WUBlastX DNA_TcMar-Marin 17424 17735 63 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Copia 394570 394668 29 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold294 WUBlastX LINE_L1-Tx1 83899 84198 42 - . . scaffold294 GLEAN mRNA 83284 86292 0.549751 - . ID=CGI_10010330; scaffold1750 WUBlastX LINE_L1-Tx1 670488 670664 56 + . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_Jockey 90273 90362 20 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold440 WUBlastX DNA_hAT-Tip100 121314 121583 68 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_CR1-L2 191374 191541 22 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_CR1-L2 191562 191702 49 - . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LINE_CR1-L2 173894 174085 82 - . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_CR1 190754 190870 23 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold40438 WUBlastX LINE_L2 9407 9694 92 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_CR1 129848 130066 25 - . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LTR_Gypsy 69545 70189 25 + . . scaffold1064 GLEAN mRNA 69641 70024 0.999372 + . ID=CGI_10006537; scaffold654 WUBlastX LTR_Gypsy 53350 53556 38 - . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX LTR_ERVK 36940 37155 48 + . . scaffold37880 GLEAN mRNA 36587 37120 0.99998 + . ID=CGI_10002539; scaffold37880 WUBlastX LTR_ERVK 36940 37155 48 + . . scaffold37880 GLEAN mRNA 32540 47810 0.54365 - . ID=CGI_10002538; scaffold43696 WUBlastX LTR_Gypsy 202604 203065 38 + . . scaffold43696 GLEAN mRNA 200896 208237 0.287333 + . ID=CGI_10011805; scaffold1293 WUBlastX LTR_Gypsy-Cigr 113442 113759 108 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 1017931 1018638 43 + . . scaffold733 GLEAN mRNA 1017652 1019905 0.995936 + . ID=CGI_10025901; scaffold100 WUBlastX LTR_Ngaro 872785 872919 89 + . . . . . -1 -1 -1 . . . C29882 WUBlastX LTR_Gypsy 2247 2822 43 + . . . . . -1 -1 -1 . . . C29202 WUBlastX DNA_IS4EU 4 279 81 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_hAT-Tip100 280389 280571 78 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_hAT-Tip100 202430 202702 77 + . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 132236 132508 25 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 590550 590627 21 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_Harbinger 976904 977173 43 - . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold685 WUBlastX LTR_Gypsy 79784 79987 82 + . . . . . -1 -1 -1 . . . scaffold38274 WUBlastX LINE_L1 16082 16576 69 + . . scaffold38274 GLEAN mRNA 16103 49739 0.512325 + . ID=CGI_10002704; scaffold632 WUBlastX LINE_L1 270769 271557 59 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_L1 91371 91466 26 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX DNA_Kolobok-Hyd 266271 267023 58 + . . scaffold1816 GLEAN mRNA 266709 267077 0.575115 + . ID=CGI_10014405; scaffold39598 WUBlastX LINE_L1 12763 13497 21 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1 234466 234546 30 - . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX DNA_TcMar-Fot1 76257 76757 61 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 428447 428626 25 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_CR1 357517 357591 24 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_RTE-X 2747 3040 59 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LINE_RTE-X 36106 36330 65 + . . . . . -1 -1 -1 . . . scaffold37680 WUBlastX LINE_RTE-X 9276 9710 52 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_RTE-BovB 206650 206859 23 - . . scaffold509 GLEAN mRNA 180574 211213 0.998586 - . ID=CGI_10018644; scaffold35124 WUBlastX LINE_RTE-BovB 4251 4430 86 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Gypsy 185051 185131 25 - . . scaffold351 GLEAN mRNA 182214 186264 0.847521 + . ID=CGI_10022595; scaffold926 WUBlastX LTR_ERV1 48597 48839 49 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_Gypsy 606896 607129 98 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LINE_RTE-X 130264 130653 44 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_RTE-X 208446 208640 62 + . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LINE_RTE-X 17736 18107 59 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 559112 559306 62 - . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_RTE-X 271066 271392 42 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 464195 464293 54 - . . . . . -1 -1 -1 . . . scaffold39986 WUBlastX LINE_RTE-X 67661 67798 91 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_DIRS 327910 328143 100 + . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold593 WUBlastX LTR_Gypsy 48724 48828 22 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 1096936 1097250 60 - . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX LINE_L2 39753 40262 44 - . . . . . -1 -1 -1 . . . scaffold42570 WUBlastX LINE_CR1 16554 16694 100 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold1821 WUBlastX LINE_CR1-L2 184283 184423 28 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L2 472470 472589 22 + . . scaffold1017 GLEAN mRNA 472107 472610 0.618241 + . ID=CGI_10025009; scaffold54 WUBlastX LINE_CR1 637381 637734 85 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LINE_Jockey 173940 174137 73 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1205 WUBlastX DNA_Crypton 109767 109997 90 + . . scaffold1205 GLEAN mRNA 96361 112859 0.994073 - . ID=CGI_10004904; scaffold1759 WUBlastX LTR_Gypsy 248962 249375 105 - . . . . . -1 -1 -1 . . . C32778 WUBlastX DNA_En-Spm 6891 7100 97 - . . . . . -1 -1 -1 . . . scaffold37080 WUBlastX DNA_Harbinger 33043 33465 63 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 39504 39578 43 + . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 11775 11963 109 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_IS4EU 907171 907350 77 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_IS4EU 907395 907523 20 + . . . . . -1 -1 -1 . . . C31346 WUBlastX DNA_TcMar-Marin 4546 4683 66 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 397421 397828 89 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold487 WUBlastX LINE_I 8900 9178 87 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L1 478317 478415 24 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1 236639 236734 27 - . . . . . -1 -1 -1 . . . scaffold817 WUBlastX DNA_MuDR 50183 50365 99 - . . scaffold817 GLEAN mRNA 50165 50320 0.712526 - . ID=CGI_10008655; scaffold1813 WUBlastX LINE_RTE-X 113159 113311 22 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold1889 WUBlastX LINE_RTE-X 197334 197600 47 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_RTE-X 274858 275190 68 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Tc1 745057 745155 32 - . . . . . -1 -1 -1 . . . scaffold41162 WUBlastX LINE_L1-Tx1 68662 69027 46 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1-Tx1 940955 941167 77 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold149 WUBlastX LINE_L1-Tx1 348067 348189 56 - . . scaffold149 GLEAN mRNA 308246 356402 0.217101 + . ID=CGI_10025300; scaffold36482 WUBlastX LINE_CR1-L2 5512 5712 113 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Pao 1097751 1097843 28 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Pao 1097979 1098365 49 - . . . . . -1 -1 -1 . . . scaffold36390 WUBlastX LTR_Gypsy 33924 34064 119 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Ngaro 301977 302174 89 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX DNA_Kolobok-IS4 38618 38842 27 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX DNA_Kolobok-IS4 39116 39172 47 - . . . . . -1 -1 -1 . . . scaffold635 WUBlastX DNA_Harbinger 107592 107666 20 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX RC_Helitron 185149 185505 119 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 97059 97337 45 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Kolobok-Hyd 81788 82462 27 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_L1 907485 907781 71 - . . . . . -1 -1 -1 . . . scaffold35726 WUBlastX DNA_TcMar-Marin 23325 23756 67 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_Ngaro 198487 198609 65 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1272 WUBlastX LTR_Ngaro 38910 39239 83 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_MuDR 31813 31908 41 + . . scaffold20 GLEAN mRNA 25974 32204 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX DNA_MuDR 31813 31908 41 + . . scaffold20 GLEAN mRNA 28495 32289 0.880534 + . ID=CGI_10023557; scaffold1138 WUBlastX LINE_Penelope 220492 220725 73 + . . . . . -1 -1 -1 . . . scaffold41228 WUBlastX LINE_RTE-X 7564 7761 91 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LINE_RTE-X 20265 20609 99 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold42070 WUBlastX DNA_Sola 59900 60382 56 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX DNA_Sola 55497 55784 115 - . . . . . -1 -1 -1 . . . scaffold477 WUBlastX LINE_RTE-X 3278 3493 37 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LTR_DIRS 329738 330130 63 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_CR1-L2 845308 845676 113 - . . . . . -1 -1 -1 . . . scaffold34882 WUBlastX LINE_CR1 1273 1566 93 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_CR1 856963 857199 81 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_L2 127055 127369 96 + . . . . . -1 -1 -1 . . . C33256 WUBlastX LTR_Ngaro 7782 8237 41 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 27168 27803 33 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 1198941 1199468 103 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1832 WUBlastX DNA_Harbinger 398329 398568 36 + . . . . . -1 -1 -1 . . . scaffold400 WUBlastX RC_Helitron 204732 205178 95 - . . scaffold400 GLEAN mRNA 195909 223191 0.813725 - . ID=CGI_10011437; scaffold1347 WUBlastX DNA_IS4EU 26388 26600 43 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1616 WUBlastX LINE_Penelope 60043 60405 29 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold11 WUBlastX LINE_Penelope 181740 181949 46 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_L1-Tx1 423434 423493 36 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1 116935 117486 77 + . . scaffold3 GLEAN mRNA 115118 120562 0.999993 + . ID=CGI_10027276; scaffold165 WUBlastX LINE_L1-Tx1 380877 380990 36 - . . scaffold165 GLEAN mRNA 370842 389362 0.999778 - . ID=CGI_10015331; scaffold165 WUBlastX LINE_L1-Tx1 380959 381249 54 - . . scaffold165 GLEAN mRNA 370842 389362 0.999778 - . ID=CGI_10015331; scaffold1097 WUBlastX LINE_RTE-X 797312 797470 56 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 797549 797707 56 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold376 WUBlastX LINE_RTE-X 439375 439824 85 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-X 777076 777222 22 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LINE_RTE-X 478832 479137 84 + . . . . . -1 -1 -1 . . . scaffold32912 WUBlastX LINE_RTE-X 9980 10432 36 + . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LINE_RTE-X 224017 224388 68 + . . scaffold522 GLEAN mRNA 220239 233086 0.999661 + . ID=CGI_10020320; scaffold1791 WUBlastX LINE_Rex-Babar 43537 43563 20 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_NOF 865863 866219 104 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX DNA_PiggyBac 669137 669295 69 + . . . . . -1 -1 -1 . . . scaffold958 WUBlastX LTR_Ngaro 227 295 23 - . . . . . -1 -1 -1 . . . scaffold39526 WUBlastX LTR_Ngaro 62539 63021 80 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 107792 108034 82 - . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX LINE_L1-Tx1 3508 4392 23 + . . scaffold1663 GLEAN mRNA 2082 14069 0.985105 + . ID=CGI_10009862; scaffold709 WUBlastX LINE_L1-Tx1 348152 348607 49 - . . . . . -1 -1 -1 . . . scaffold42788 WUBlastX LINE_L1-Tx1 123893 124243 89 - . . scaffold42788 GLEAN mRNA 99407 151977 0.339426 + . ID=CGI_10007755; scaffold361 WUBlastX LINE_CR1-L2 49442 49747 87 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_CR1-L2 611558 611773 22 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_CR1 151151 151696 43 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold41598 WUBlastX DNA_PiggyBac 111415 111747 91 - . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LTR_DIRS 49952 50692 100 - . . . . . -1 -1 -1 . . . C26612 WUBlastX DNA_Merlin 1883 2239 66 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 318909 319163 44 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 699164 699553 51 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_hAT-hATw 4267 4791 43 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_Harbinger 257530 257667 33 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; C34122 WUBlastX LTR_Gypsy 12802 12909 35 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_Kolobok 207496 207774 53 + . . . . . -1 -1 -1 . . . C8225 WUBlastX DNA_PiggyBac 3 134 146 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_PiggyBac 92278 92952 100 + . . scaffold1703 GLEAN mRNA 88691 94932 1 + . ID=CGI_10023040; scaffold1616 WUBlastX LINE_RTE-X 62652 63092 57 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold459 WUBlastX LINE_RTE-X 92878 92985 38 + . . scaffold459 GLEAN mRNA 88021 99888 0.843454 + . ID=CGI_10018169; scaffold1899 WUBlastX LTR_DIRS 225675 226211 60 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_L1-Tx1 178742 179098 91 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_CR1 8650 8805 139 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold601 WUBlastX LINE_L2 947219 947719 86 - . . . . . -1 -1 -1 . . . scaffold40980 WUBlastX LINE_L2 89522 89803 95 - . . scaffold40980 GLEAN mRNA 79073 90416 0.999635 - . ID=CGI_10004606; scaffold41344 WUBlastX LINE_L2 113010 113501 111 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold386 WUBlastX LTR_Gypsy 44389 44607 33 + . . . . . -1 -1 -1 . . . C14174 WUBlastX LTR_Gypsy 16 240 87 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 114530 114994 130 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LTR_Gypsy 275901 276455 63 - . . . . . -1 -1 -1 . . . scaffold205 WUBlastX LTR_Gypsy 1 153 153 - . . . . . -1 -1 -1 . . . scaffold1867 WUBlastX DNA_Kolobok-Hyd 105219 105260 30 + . . scaffold1867 GLEAN mRNA 102678 111179 0.989687 + . ID=CGI_10006446; scaffold1867 WUBlastX DNA_Kolobok-Hyd 105528 106283 84 + . . scaffold1867 GLEAN mRNA 102678 111179 0.989687 + . ID=CGI_10006446; scaffold35238 WUBlastX LINE_L1-Tx1 733 969 68 - . . . . . -1 -1 -1 . . . C31070 WUBlastX DNA_Maverick 46 324 139 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1-Tx1 157782 158402 52 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_CR1-L2 172852 173613 60 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_CR1-L2 911 1246 150 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Pao 33879 34199 111 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 293 709 55 - . . . . . -1 -1 -1 . . . scaffold40476 WUBlastX LTR_Gypsy 22995 23633 129 - . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L2 112896 113477 92 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold736 WUBlastX LTR_Gypsy 49539 49730 157 - . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LTR_Gypsy 26526 26702 121 + . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LTR_Gypsy 26830 27024 24 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_Harbinger 487303 487473 42 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_IS4EU 118742 118915 76 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX DNA_Kolobok 396032 396250 73 - . . . . . -1 -1 -1 . . . C30072 WUBlastX LINE_L1 2965 3174 93 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_RTE-BovB 103082 103675 54 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_L1-Tx1 225506 225646 78 + . . scaffold925 GLEAN mRNA 224843 231445 0.810337 + . ID=CGI_10017420; scaffold925 WUBlastX LINE_L1-Tx1 225639 225800 74 + . . scaffold925 GLEAN mRNA 224843 231445 0.810337 + . ID=CGI_10017420; scaffold676 WUBlastX LINE_L1-Tx1 279853 280362 52 + . . . . . -1 -1 -1 . . . scaffold1783 WUBlastX LINE_L1-Tx1 25031 25816 126 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_CR1 172941 173189 161 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_L2 293064 293426 109 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold41082 WUBlastX LINE_CR1 56718 57221 61 - . . . . . -1 -1 -1 . . . scaffold31222 WUBlastX LTR_Ngaro 7245 7754 91 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 483385 483930 95 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold1480 WUBlastX DNA_Kolobok 175188 175517 69 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Kolobok 174656 174802 93 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_RTE-X 9707 9892 111 - . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Maverick 81251 81409 56 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_Proto2 316231 316404 20 - . . . . . -1 -1 -1 . . . scaffold1533 WUBlastX LINE_RTE-X 205747 205917 94 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Gypsy 356234 357646 939 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold1806 WUBlastX LTR_Gypsy 55439 57166 954 - . . scaffold1806 GLEAN mRNA 45331 76950 0.994674 + . ID=CGI_10006156; scaffold44 WUBlastX LTR_Ngaro 225336 226628 833 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Gypsy 396481 396816 33 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1772 WUBlastX LINE_RTE-X 403557 403670 35 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 613206 613937 39 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_L2 2086 2799 211 + . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_RTE-X 35042 35317 152 + . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_RTE-X 92383 93030 333 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_RTE-X 57820 57936 50 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_R2-Hero 345336 345470 61 + . . scaffold712 GLEAN mRNA 336086 347992 0.995237 + . ID=CGI_10016485; scaffold37880 WUBlastX DNA_Zator 19063 20724 783 + . . scaffold37880 GLEAN mRNA 19327 21151 1 + . ID=CGI_10002533; scaffold37880 WUBlastX DNA_Zator 20774 21046 71 + . . scaffold37880 GLEAN mRNA 19327 21151 1 + . ID=CGI_10002533; scaffold37880 WUBlastX DNA_Zator 21332 21547 79 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_CR1 27062 27424 46 - . . scaffold38626 GLEAN mRNA 19577 33145 1 - . ID=CGI_10002868; scaffold20 WUBlastX LTR_Gypsy-Cigr 38594 38830 122 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Pao 161599 161934 175 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Ngaro 245572 246000 143 + . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX DNA_Kolobok-IS4 178891 179523 168 - . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold1562 WUBlastX LTR_Gypsy 36821 36976 20 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Ngaro 115499 116227 47 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LINE_L1 301562 301732 31 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_L1 380546 380629 25 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; scaffold40556 WUBlastX LTR_Ngaro 11614 11856 76 - . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold911 WUBlastX DNA_hAT-Tip100 107817 108155 121 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX DNA_hAT-Tip100 108499 108651 26 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold1583 WUBlastX LTR_Gypsy 676029 677381 1035 + . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_Harbinger 329893 330168 201 - . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_Harbinger 330153 330695 587 - . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_Harbinger 330679 331080 252 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LTR_Gypsy 69837 70493 80 + . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_RTE-BovB 314635 316053 309 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold950 WUBlastX LINE_RTE-X 771808 773574 688 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_Maverick 639386 639520 77 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1140538 1140699 165 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 89879 92215 705 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1040456 1040974 347 - . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_Pao 87770 88177 258 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Pao 197587 197958 164 - . . . . . -1 -1 -1 . . . C25496 WUBlastX LINE_CR1 353 1033 105 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_CR1 157893 158405 95 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 857728 857880 40 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_CR1 361100 361402 177 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_CR1-L2 529133 529237 59 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 102937 103131 102 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX DNA_Kolobok-IS4 413132 413608 123 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LINE_L1 321608 322141 78 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold32550 WUBlastX LINE_RTE-X 6714 6992 131 - . . . . . -1 -1 -1 . . . scaffold41588 WUBlastX LINE_RTE-X 61386 62003 73 - . . scaffold41588 GLEAN mRNA 48446 70491 0.998791 - . ID=CGI_10005255; scaffold1589 WUBlastX LINE_RTE-X 742715 743587 81 + . . . . . -1 -1 -1 . . . scaffold42096 WUBlastX LINE_RTE-X 105183 105710 112 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42990 WUBlastX LINE_RTE-X 86277 86528 157 + . . scaffold42990 GLEAN mRNA 72080 92253 0.276547 + . ID=CGI_10008376; scaffold38378 WUBlastX LTR_Ngaro 48717 48857 81 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 587308 587400 38 + . . . . . -1 -1 -1 . . . scaffold33904 WUBlastX LINE_RTE-X 4362 4922 109 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 95379 96425 95 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1 92823 93110 29 - . . . . . -1 -1 -1 . . . scaffold1163 WUBlastX LINE_L1-Tx1 188744 189298 397 + . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold1163 WUBlastX LINE_L1-Tx1 189235 191037 549 + . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold35110 WUBlastX LINE_RTE-X 6888 8534 804 + . . . . . -1 -1 -1 . . . scaffold41604 WUBlastX LINE_L1-Tx1 62578 64749 753 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 237319 237426 27 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Pao 157469 157870 164 - . . . . . -1 -1 -1 . . . scaffold932 WUBlastX DNA_hAT 145632 146306 168 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX DNA_hAT 392636 392815 58 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; C32222 WUBlastX DNA_Kolobok-IS4 1236 1769 58 - . . . . . -1 -1 -1 . . . C32222 WUBlastX DNA_Kolobok-IS4 2564 2845 74 - . . C32222 GLEAN mRNA 1824 9853 0.999993 - . ID=CGI_10000866; C32606 WUBlastX DNA_hAT-hATw 8243 8836 151 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 223924 224325 165 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_Proto2 167287 168183 101 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 773366 773863 103 - . . scaffold1189 GLEAN mRNA 763568 774596 0.392072 + . ID=CGI_10023832; scaffold1081 WUBlastX LTR_Gypsy 54524 54613 21 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Gypsy 210574 210894 36 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Gypsy 212504 212761 259 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1532 WUBlastX LTR_Gypsy 368353 368466 53 + . . . . . -1 -1 -1 . . . scaffold1087 WUBlastX LTR_Gypsy 13627 14586 747 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold1833 WUBlastX LTR_Gypsy 94156 94383 92 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_CR1-L2 440725 441159 189 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_L2 223509 223724 24 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1734 WUBlastX LINE_L2 153895 154668 85 - . . scaffold1734 GLEAN mRNA 152020 160994 0.46186 + . ID=CGI_10010541; scaffold240 WUBlastX LTR_Gypsy 38948 39079 75 - . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LTR_DIRS 115909 116688 125 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_DIRS? 52088 52627 82 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_DIRS? 52627 52728 51 + . . . . . -1 -1 -1 . . . scaffold41772 WUBlastX LTR_Gypsy 100408 100620 57 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Gypsy 383622 383780 102 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1-Tx1 198610 198738 74 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_RTE-X 247993 248406 131 - . . scaffold759 GLEAN mRNA 240053 255917 0.998454 - . ID=CGI_10010781; scaffold1889 WUBlastX LINE_RTE-X 183917 184483 107 - . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LINE_RTE-X 32798 33445 116 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_RTE-X 556448 557005 116 - . . scaffold82 GLEAN mRNA 555436 563532 1 - . ID=CGI_10025265; scaffold489 WUBlastX LINE_RTE-X 626770 627525 89 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LINE_RTE-X 627611 627706 28 + . . . . . -1 -1 -1 . . . C33658 WUBlastX DNA_Sola 10830 11423 34 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; C25748 WUBlastX LTR_DIRS 3246 3362 36 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy-Cigr 131751 131837 22 - . . . . . -1 -1 -1 . . . scaffold40006 WUBlastX DNA_TcMar-Tc1 8092 8355 128 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_RTE-BovB 335477 335734 65 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold1093 WUBlastX LINE_L2 49343 50251 33 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_L2 74693 75106 118 + . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LINE_CR1 88768 89622 139 + . . . . . -1 -1 -1 . . . scaffold722 WUBlastX LINE_CR1-L2 299996 300214 140 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_hAT 1355782 1355952 20 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LTR_DIRS 93935 94162 124 - . . scaffold1749 GLEAN mRNA 92161 94954 0.876214 - . ID=CGI_10008254; scaffold1749 WUBlastX LTR_DIRS 94233 94463 76 - . . scaffold1749 GLEAN mRNA 92161 94954 0.876214 - . ID=CGI_10008254; scaffold535 WUBlastX LTR_DIRS 10557 10808 131 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_DIRS 27680 28159 181 + . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX LTR_Ngaro 18926 19216 77 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_DIRS 287940 288167 70 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_L1 62808 63458 185 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1 484127 484552 159 + . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX LINE_L1 59790 60311 43 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Marin 541265 541723 164 - . . . . . -1 -1 -1 . . . scaffold835 WUBlastX DNA_MuDR 409054 409677 183 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-X 301753 302631 102 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX DNA_TcMar-Pogo 592873 593073 73 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold101 WUBlastX DNA_TcMar-Tc1 533343 533864 148 - . . . . . -1 -1 -1 . . . C31978 WUBlastX RC_Helitron 6790 7218 106 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 38201 38320 51 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 209277 210422 324 + . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy-Cigr 30875 34504 1422 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 209389 209448 21 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LTR_Gypsy-Cigr 153836 154333 189 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold1866 WUBlastX LINE_CR1-L2 247196 247471 94 - . . scaffold1866 GLEAN mRNA 240570 251729 0.651094 - . ID=CGI_10017912; C30570 WUBlastX LINE_L2 5366 6073 154 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_L2 254891 255316 156 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_Gypsy 118432 118521 22 - . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_RTE-BovB 265397 265957 163 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX DNA_Crypton 158257 158841 121 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX DNA_Crypton 159202 159465 99 + . . . . . -1 -1 -1 . . . scaffold1814 WUBlastX LTR_Ngaro 79686 79838 43 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Ngaro 61778 62281 169 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Ngaro 315096 315584 120 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 1107784 1108161 173 + . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LTR_Gypsy 3423 3575 57 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX DNA_TcMar-Tc1 52880 53110 51 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 571390 571692 158 - . . . . . -1 -1 -1 . . . scaffold35070 WUBlastX DNA_PiggyBac 11761 11886 31 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_RTE-BovB 140374 141162 97 - . . . . . -1 -1 -1 . . . scaffold41970 WUBlastX LINE_L1-Tx1 37629 38153 143 - . . scaffold41970 GLEAN mRNA 24536 41358 0.912364 - . ID=CGI_10005882; scaffold1149 WUBlastX LTR_Gypsy-Cigr 455631 455783 32 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_CR1 16854 17657 372 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold1831 WUBlastX LINE_L1-Tx1 34302 34775 199 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 34302 34775 199 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_L1-Tx1 34985 37786 952 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold71 WUBlastX LTR_Gypsy 208628 208720 23 - . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LINE_CR1-L2 7400 7678 98 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 91736 92287 59 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Ngaro 196320 196529 20 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Ngaro 196532 196729 89 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Ngaro 197027 197170 47 + . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX DNA_Kolobok-IS4 46032 46556 186 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Kolobok 33742 33882 21 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1 1483339 1483530 106 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L1 270053 270625 135 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1-Tx1 471906 472121 40 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-X 455669 455890 132 + . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold38370 WUBlastX LTR_DIRS 43427 43999 186 + . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LINE_L1-Tx1 138252 141902 1026 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 194574 194717 64 + . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 194713 196269 840 + . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 196190 198241 288 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_CR1 721042 721758 177 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_CR1 498046 498705 190 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1 699815 700726 42 + . . . . . -1 -1 -1 . . . C13410 WUBlastX LTR_Copia 17 217 244 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 101420 101620 92 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 102874 102981 22 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX DNA_IS4EU 23080 23295 22 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX DNA_hAT-Tip100 633103 633561 134 - . . . . . -1 -1 -1 . . . C30084 WUBlastX LINE_Penelope 5446 5721 88 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-BovB 760158 760418 96 + . . . . . -1 -1 -1 . . . scaffold39986 WUBlastX LINE_RTE-X 62479 62832 47 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_Sola 397949 398395 185 + . . scaffold203 GLEAN mRNA 376437 414685 0.482825 + . ID=CGI_10021070; scaffold203 WUBlastX DNA_Sola 397949 398395 185 + . . scaffold203 GLEAN mRNA 380949 400052 0.995245 - . ID=CGI_10021071; scaffold393 WUBlastX LTR_ERV1 994379 994486 38 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 84201 84380 69 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX DNA_IS 722167 723189 1708 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LTR_Gypsy 19934 21634 964 - . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX LTR_Pao 4477 4695 106 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_CR1-L2 570372 570647 128 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold1646 WUBlastX LINE_CR1 48724 49251 183 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_Crypton 387355 388131 226 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_Harbinger 257455 257634 84 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold794 WUBlastX LINE_L1-Tx1 95486 96457 55 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 447535 448401 100 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1062 WUBlastX LTR_Gypsy-Troyk 100973 101899 280 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 101848 103113 664 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 103638 104633 280 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 104654 104827 109 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold42994 WUBlastX LTR_Gypsy 187129 189321 1249 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_CR1 66522 66818 20 + . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_CR1-L2 484322 485704 99 - . . . . . -1 -1 -1 . . . scaffold41400 WUBlastX LINE_CR1-L2 9928 10050 28 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy-Cigr 348182 348469 241 + . . . . . -1 -1 -1 . . . scaffold37520 WUBlastX DNA_Harbinger 40617 41216 133 - . . . . . -1 -1 -1 . . . scaffold37520 WUBlastX DNA_Harbinger 41122 41487 80 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Gypsy 81681 82610 252 + . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_I 457849 458280 69 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1711 WUBlastX LINE_RTE-X 320483 320668 84 + . . . . . -1 -1 -1 . . . scaffold40290 WUBlastX LINE_RTE-X 71504 72055 110 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy 66955 67323 119 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold962 WUBlastX LTR_Gypsy 105071 105490 21 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 107427 107651 49 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 107801 108724 608 + . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LTR_Pao 311712 312143 379 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold126 WUBlastX LTR_Gypsy 277868 279352 227 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_CR1-L2 394210 394977 171 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Gypsy 386930 387649 241 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L1-Tx1 900263 900409 87 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_L1-Tx1 900546 900875 99 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_L1-Tx1 900908 901330 25 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold588 WUBlastX LINE_RTE-X 5861 6475 85 - . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 102989 103177 63 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1500 WUBlastX DNA_TcMar-Tc1 84393 84722 26 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 10688 11248 251 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 11250 12419 617 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 12413 12598 122 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 12579 12761 136 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 12764 13726 314 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 13701 13916 50 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 13927 14271 265 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 14338 14382 25 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Gypsy 658884 659339 157 + . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX LTR_Pao 129178 129366 55 - . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX LTR_Pao 129740 129991 170 - . . . . . -1 -1 -1 . . . scaffold37844 WUBlastX LINE_CR1 27820 28230 258 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_DIRS 359353 359532 66 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_DIRS 360334 360546 35 - . . scaffold621 GLEAN mRNA 360060 382748 0.996965 - . ID=CGI_10017688; scaffold502 WUBlastX LTR_Ngaro 157789 158235 87 - . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_hAT-Ac 105962 106279 136 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 86694 86963 22 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_L1 195632 195679 22 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 155906 156121 120 - . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LTR_Pao 51567 52178 230 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_DIRS 428114 428554 213 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LTR_Ngaro 46729 47721 141 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Ngaro 1348482 1348964 237 - . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX LINE_RTE-BovB 46933 47547 130 - . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_L1-Tx1 32940 33647 209 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 32940 33647 209 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold1551 WUBlastX LINE_L1-Tx1 125951 128884 1300 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_Crypton 859356 859895 167 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LTR_DIRS 204977 205411 258 + . . . . . -1 -1 -1 . . . C34110 WUBlastX DNA_IS4EU 12772 13140 181 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold1112 WUBlastX LINE_RTE-X 237765 238106 105 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-X 238283 239020 120 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_DIRS 5021 5197 27 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_DIRS 5268 5417 23 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_DIRS 5722 6015 123 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_DIRS 6011 6169 63 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_CR1-L2 45155 46459 94 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_L2 93995 94138 124 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_L2 94143 94589 135 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_DIRS 218644 219177 281 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold42022 WUBlastX LTR_DIRS? 94568 95116 132 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LTR_DIRS? 95052 95327 70 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_PiggyBac 152666 153697 239 - . . . . . -1 -1 -1 . . . scaffold18 WUBlastX DNA_hAT-Tip100 1774 2457 229 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 601995 602453 127 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LINE_Penelope 52939 53352 59 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold659 WUBlastX LTR_DIRS 389345 389611 60 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX LTR_DIRS 389626 390264 142 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LINE_RTE-X 90295 90567 67 + . . . . . -1 -1 -1 . . . scaffold34596 WUBlastX DNA_TcMar-Tc1 6921 7226 186 + . . scaffold34596 GLEAN mRNA 238 15197 0.650923 - . ID=CGI_10001323; scaffold33958 WUBlastX LTR_Gypsy 4590 7376 2384 - . . . . . -1 -1 -1 . . . scaffold1492 WUBlastX LINE_L1 84419 84619 85 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_RTE-X 8919 10277 162 + . . . . . -1 -1 -1 . . . scaffold265 WUBlastX LTR_Pao 22274 23017 256 + . . scaffold265 GLEAN mRNA 21990 22280 0.853024 + . ID=CGI_10003428; scaffold39352 WUBlastX LINE_L2 57940 59253 181 - . . . . . -1 -1 -1 . . . scaffold1121 WUBlastX LINE_CR1-L2 23582 23686 38 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 190049 190420 137 - . . . . . -1 -1 -1 . . . C35716 WUBlastX DNA_IS4EU 16578 16952 210 + . . . . . -1 -1 -1 . . . scaffold35406 WUBlastX DNA_P 16740 17912 239 - . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold128 WUBlastX LINE_Penelope 93337 93471 57 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 93477 93545 47 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 94223 94699 185 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold1041 WUBlastX LINE_L1-Tx1 21039 21347 47 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L2 512075 512122 22 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold198 WUBlastX LINE_RTE-BovB 555399 555836 151 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_RTE-X 165741 166013 115 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_RTE-X 166213 166635 109 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 6646 6765 59 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 158932 159561 147 + . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_L1 44443 44592 34 - . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LINE_RTE-X 54801 55187 158 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 88184 88279 25 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 89911 92190 1699 - . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX LTR_Gypsy 53261 56743 2768 - . . scaffold1806 GLEAN mRNA 45331 76950 0.994674 + . ID=CGI_10006156; scaffold150 WUBlastX LTR_Gypsy 798885 799028 25 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1 136449 136526 43 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1 291428 291907 271 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 89424 90017 95 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_RTE-X 198742 200103 231 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_L1 191512 192312 266 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-Ac 462823 463203 154 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-X 32675 33304 132 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Pao 293411 294412 297 + . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_CR1 266613 266933 45 - . . scaffold400 GLEAN mRNA 262709 267661 0.544852 - . ID=CGI_10011440; scaffold1371 WUBlastX LINE_L2 7440 7616 58 - . . . . . -1 -1 -1 . . . scaffold1371 WUBlastX LINE_L2 7773 8327 233 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX RC_Helitron 169185 169304 27 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX RC_Helitron 169325 169444 61 - . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 57996 58460 35 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 38804 39007 90 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 257978 258307 102 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_Zorro 404610 404897 24 + . . scaffold332 GLEAN mRNA 403551 412368 0.544643 + . ID=CGI_10020886; scaffold422 WUBlastX LINE_L2 361365 362087 318 + . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX DNA_IS4EU 67375 67737 124 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 164285 164467 84 + . . . . . -1 -1 -1 . . . scaffold465 WUBlastX LINE_CR1 2121 2408 126 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_IS4EU 19893 20000 46 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX DNA_Maverick 73144 73371 99 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 405945 406235 105 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_Sola 129811 130341 327 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_DIRS 51680 52321 184 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_DIRS 52776 53426 79 - . . . . . -1 -1 -1 . . . C33188 WUBlastX DNA_Harbinger 3289 3501 146 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 513509 513739 117 - . . . . . -1 -1 -1 . . . C33496 WUBlastX LINE_RTE-X 4290 4400 28 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_RTE-X 32905 34170 168 - . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LINE_L2 113636 114451 280 - . . scaffold1650 GLEAN mRNA 102282 130606 0.781405 - . ID=CGI_10017772; scaffold29372 WUBlastX LTR_Ngaro 2731 2904 25 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 512808 513380 171 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LTR_Gypsy 210726 211832 367 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 187636 187923 118 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold576 WUBlastX LINE_RTE-X 109361 109573 75 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1 14734 15117 43 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_TcMar-Tc1 550049 550522 87 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_TcMar-Tc1 550570 550875 147 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_TcMar-Tc1 354048 354242 30 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_TcMar-Tc1 354242 354352 89 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_TcMar-Tc1 354331 354684 143 + . . . . . -1 -1 -1 . . . scaffold17 WUBlastX LTR_Ngaro 4361 4501 78 - . . . . . -1 -1 -1 . . . scaffold41452 WUBlastX LINE_L2 62494 62748 35 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold40856 WUBlastX LINE_Penelope 76223 76804 136 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_Penelope 304347 305828 281 + . . . . . -1 -1 -1 . . . C30458 WUBlastX LINE_L1-Tx1 6104 7870 121 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_L1-Tx1 113850 114176 253 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_L1-Tx1 115371 115550 93 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_L1-Tx1 502647 503837 282 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-X 409855 409974 47 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 83178 83975 228 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy-Cigr 229880 230215 190 - . . . . . -1 -1 -1 . . . scaffold42030 WUBlastX LTR_DIRS 17053 17976 350 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 927038 927439 259 - . . . . . -1 -1 -1 . . . scaffold1173 WUBlastX LTR_Gypsy 115424 116221 399 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1256547 1257344 399 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX DNA_Harbinger 180692 181306 368 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_IS4EU 447039 447818 362 + . . . . . -1 -1 -1 . . . scaffold41400 WUBlastX DNA_IS4EU 115949 116506 234 + . . scaffold41400 GLEAN mRNA 116075 116509 1 + . ID=CGI_10005038; scaffold41400 WUBlastX DNA_IS4EU 116738 116911 98 + . . . . . -1 -1 -1 . . . scaffold788 WUBlastX DNA_IS4EU 123808 123897 31 + . . . . . -1 -1 -1 . . . scaffold788 WUBlastX DNA_IS4EU 124562 124903 76 + . . . . . -1 -1 -1 . . . scaffold1756 WUBlastX LINE_RTE-X 13679 13960 132 + . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 171727 172050 86 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 172044 172202 42 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 172235 172624 29 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 172741 173085 154 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 173141 173344 86 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_Academ 185726 186508 156 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L2 476253 476999 228 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold209 WUBlastX DNA_hAT-Tip100 258658 258852 56 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 258852 259121 134 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 259313 259774 214 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold559 WUBlastX LTR_Gypsy 6670 7461 436 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 247207 247377 89 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1-Tx1 247609 247836 75 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1-Tx1 248048 248671 166 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold1819 WUBlastX LTR_Gypsy 71845 72519 242 - . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LTR_Gypsy 74268 75230 441 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_DIRS 582139 582582 201 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 1223252 1223704 37 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_L1 55975 56853 286 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L1-Tx1 361635 361739 23 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 82950 83699 229 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LINE_CR1-L2 91979 92560 315 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 637080 637391 156 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 487082 489172 216 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1 1834311 1834403 25 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 647254 647907 46 + . . scaffold678 GLEAN mRNA 636648 664664 0.986036 - . ID=CGI_10026369; scaffold43036 WUBlastX DNA_hAT-Blackja 149711 149761 25 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX DNA_hAT-Blackja 151848 152153 73 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold1605 WUBlastX LINE_RTE-X 32705 33085 224 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-BovB 527772 527891 88 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-BovB 527909 528208 388 + . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LTR_Gypsy 239174 239710 179 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LTR_Gypsy-Cigr 21254 21559 182 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_TcMar-Marin 408053 408340 186 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Pao 12229 12957 208 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold41902 WUBlastX LTR_Ngaro 73734 74717 384 - . . . . . -1 -1 -1 . . . scaffold42570 WUBlastX DNA_Merlin 2639 3364 395 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_RTE-BovB 200875 201045 43 - . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LINE_RTE-BovB 60507 60746 81 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold37508 WUBlastX LTR_Gypsy 32999 33442 118 - . . . . . -1 -1 -1 . . . scaffold37508 WUBlastX LTR_Gypsy 33438 33929 386 - . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX LINE_CR1 153449 154363 448 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX LINE_CR1 154369 154551 41 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_L1-Tx1 363973 364518 93 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_L1-Tx1 364865 365095 42 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_CR1 910 1038 25 + . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX LTR_Gypsy 185375 185680 156 - . . scaffold1500 GLEAN mRNA 171651 188068 0.692586 - . ID=CGI_10007900; scaffold43844 WUBlastX DNA_TcMar-Marin 186729 187061 243 + . . scaffold43844 GLEAN mRNA 182095 193587 0.917611 + . ID=CGI_10013151; scaffold243 WUBlastX LINE_RTE-X 135782 136960 278 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 571379 571786 58 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy-Cigr 116229 117395 525 + . . . . . -1 -1 -1 . . . C33436 WUBlastX RC_Helitron 4498 4746 76 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_TcMar-Pogo 51748 52623 340 + . . scaffold1888 GLEAN mRNA 49981 53887 0.998764 + . ID=CGI_10013292; scaffold70 WUBlastX LINE_L1-Tx1 337028 337228 39 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 992751 992786 22 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 666146 666634 93 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LINE_CR1-L2 94568 95533 158 - . . . . . -1 -1 -1 . . . scaffold1654 WUBlastX DNA_hAT-Tip100 54121 56160 477 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 38078 39319 516 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_RTE-X 53772 54086 100 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold271 WUBlastX DNA_Kolobok 115368 115802 231 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_RTE-X 136501 136716 91 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 677555 677656 31 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Harbinger 380546 381154 319 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 195026 196459 474 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_RTE-X 107301 108425 435 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_RTE-X 134052 134804 425 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_RTE-X 134813 135133 61 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 382852 383352 292 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 383361 383561 87 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 383818 383982 31 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy-Gmr1 76263 76337 23 - . . . . . -1 -1 -1 . . . C31978 WUBlastX RC_Helitron 4113 4226 22 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-X 77815 78210 80 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold925 WUBlastX LTR_DIRS 442205 442345 28 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold100 WUBlastX LINE_RTE-X 819122 820006 522 + . . . . . -1 -1 -1 . . . scaffold41588 WUBlastX LINE_L1-Tx1 103992 104291 56 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_hAT 495384 495569 53 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold987 WUBlastX LTR_DIRS 87137 88114 422 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold4 WUBlastX LTR_DIRS 316174 317301 274 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 318929 319165 62 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 198409 198924 155 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold1009 WUBlastX LTR_DIRS 461315 462745 327 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_DIRS 462909 463118 112 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_DIRS 463420 463626 88 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1073554 1073694 45 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold1883 WUBlastX LTR_Gypsy 125820 126110 73 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 673373 674455 642 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-X 342639 342797 31 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Gypsy 475704 475841 101 + . . . . . -1 -1 -1 . . . C29414 WUBlastX LINE_RTE-X 5951 6571 294 - . . . . . -1 -1 -1 . . . scaffold33876 WUBlastX DNA_Maverick 10020 10412 250 - . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Pao 62280 63305 232 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 132170 132514 105 - . . . . . -1 -1 -1 . . . scaffold39144 WUBlastX RC_Helitron 2042 3556 643 + . . . . . -1 -1 -1 . . . scaffold39592 WUBlastX LINE_L2 43628 43723 32 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 145815 145958 54 - . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX LINE_L1-Tx1 30763 31299 183 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Gypsy 392496 392702 26 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold469 WUBlastX LINE_RTE-BovB 640650 641669 648 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_L1 363967 364023 26 - . . . . . -1 -1 -1 . . . scaffold104 WUBlastX LTR_Pao 4377 4472 24 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Pao 312931 313038 32 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 514531 514926 212 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 514950 515294 173 - . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX DNA_TcMar-Fot1 365040 365453 308 - . . scaffold1611 GLEAN mRNA 361117 373640 0.975667 + . ID=CGI_10014334; scaffold1611 WUBlastX DNA_TcMar-Fot1 365470 366165 420 - . . scaffold1611 GLEAN mRNA 361117 373640 0.975667 + . ID=CGI_10014334; scaffold41304 WUBlastX LTR_Ngaro 71447 72052 343 + . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX LINE_RTE-X 32684 34249 594 - . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy 26546 26602 28 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_RTE-X 114772 115950 680 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_L2 451503 451721 142 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 874855 875175 23 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_RTE-X 679140 679991 139 + . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_TcMar-Fot1 44902 45090 188 - . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_TcMar-Fot1 45089 45829 480 - . . . . . -1 -1 -1 . . . scaffold868 WUBlastX LINE_Penelope 115361 116467 404 + . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LINE_RTE-X 16448 16750 204 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Pao 312982 313341 110 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_RTE-X 102430 103440 56 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold1480 WUBlastX LINE_R2 81800 82435 335 - . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_L1 7784 8485 151 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_CR1-L2 761635 762096 140 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 40206 40676 56 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Ngaro 484068 485528 762 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold169 WUBlastX LINE_CR1-L2 2999 3046 22 + . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LTR_Pao 301438 301845 190 - . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LTR_Pao 44965 46344 735 - . . scaffold1815 GLEAN mRNA 41524 49047 0.999999 + . ID=CGI_10010261; scaffold534 WUBlastX LTR_Gypsy 69532 69690 32 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold630 WUBlastX LINE_L1-Tx1 221875 222243 122 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1-Tx1 222251 223009 281 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1-Tx1 222966 223283 257 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1-Tx1 223427 223642 52 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_Penelope 182578 182937 25 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 109462 109548 27 + . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX DNA_PiggyBac 175208 175330 79 + . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_L2 54761 55000 41 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold1777 WUBlastX LTR_Ngaro 8858 8926 24 + . . scaffold1777 GLEAN mRNA 5363 10416 0.999547 + . ID=CGI_10003152; scaffold1800 WUBlastX LTR_Ngaro 462300 462368 29 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Ngaro 462469 462606 35 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Ngaro 364960 365208 51 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_DIRS 91370 91531 71 - . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LTR_Ngaro 425662 425901 85 - . . scaffold1682 GLEAN mRNA 421857 429054 0.325277 - . ID=CGI_10016058; scaffold1359 WUBlastX LINE_L2 181802 181831 21 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX DNA_Crypton 238100 238411 74 - . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Gypsy 14984 15697 57 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14984 15697 57 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold1301 WUBlastX LTR_Gypsy 706148 706642 40 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 3886 3930 22 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 1023848 1024009 38 - . . scaffold425 GLEAN mRNA 997658 1029515 0.993112 - . ID=CGI_10026011; scaffold339 WUBlastX LTR_Gypsy 120581 120814 31 - . . . . . -1 -1 -1 . . . scaffold387 WUBlastX LTR_Gypsy 43758 44039 74 - . . . . . -1 -1 -1 . . . scaffold38370 WUBlastX LTR_Gypsy 43292 43927 35 + . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LTR_Gypsy 80465 80866 39 - . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX DNA_IS4EU 512042 512293 45 + . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold1020 WUBlastX DNA_IS4EU 10748 10828 20 + . . scaffold1020 GLEAN mRNA 10748 11618 1 + . ID=CGI_10012847; scaffold1816 WUBlastX RC_Helitron 120392 120625 49 + . . scaffold1816 GLEAN mRNA 110695 122090 0.998785 + . ID=CGI_10014398; scaffold99 WUBlastX RC_Helitron 314995 315762 41 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX RC_Helitron 88487 88564 24 + . . . . . -1 -1 -1 . . . C29438 WUBlastX LINE_L1-Tx1 4037 4129 24 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold433 WUBlastX LINE_L1-Tx1 1243507 1243713 79 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L1 872685 872900 22 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX DNA_Kolobok-Hyd 113744 113782 24 - . . scaffold911 GLEAN mRNA 113243 114834 1 - . ID=CGI_10012138; scaffold911 WUBlastX DNA_Kolobok-Hyd 114322 114456 21 - . . scaffold911 GLEAN mRNA 113243 114834 1 - . ID=CGI_10012138; scaffold1327 WUBlastX DNA_IS4EU 346624 346701 62 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 1599791 1599871 23 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold37732 WUBlastX DNA_MuDR 46419 46703 70 - . . scaffold37732 GLEAN mRNA 41329 46430 0.987958 + . ID=CGI_10002485; scaffold43552 WUBlastX LINE_Penelope 254749 255195 42 - . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_Dong-R4 86282 86470 53 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold41988 WUBlastX DNA_PiggyBac 94807 94884 24 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX DNA_PiggyBac 643687 643776 22 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_RTE-BovB 103010 103423 41 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 1279108 1279497 39 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold1805 WUBlastX LINE_RTE-X 50405 50515 22 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 1680237 1680401 79 - . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_RTE-X 8269 8601 35 - . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_RTE-X 9459 9515 20 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_RTE-X 559818 559967 39 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX DNA_TcMar-Marin 140492 140644 59 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L1-Tx1 518443 518661 39 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_L1-Tx1 216666 216851 52 + . . scaffold457 GLEAN mRNA 213050 222173 0.400336 - . ID=CGI_10014534; scaffold41766 WUBlastX DNA_TcMar-Tc1 86271 86396 59 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_Zator 370578 370682 21 + . . scaffold513 GLEAN mRNA 363257 378497 0.79116 + . ID=CGI_10022153; scaffold513 WUBlastX DNA_Zator 370872 371021 28 + . . scaffold513 GLEAN mRNA 363257 378497 0.79116 + . ID=CGI_10022153; scaffold270 WUBlastX LINE_L2 115592 115867 61 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LTR_Pao 187031 187360 75 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 18616 18945 75 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Gypsy-Cigr 364026 364505 72 + . . . . . -1 -1 -1 . . . scaffold1641 WUBlastX LTR_Gypsy-Cigr 237431 237637 76 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Copia 1304649 1304861 53 + . . . . . -1 -1 -1 . . . C25832 WUBlastX LINE_L2 1275 1382 20 + . . . . . -1 -1 -1 . . . scaffold37006 WUBlastX LTR_DIRS 27337 27483 41 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold1018 WUBlastX LTR_Ngaro 509068 509874 35 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LTR_DIRS 201421 201525 32 - . . . . . -1 -1 -1 . . . scaffold38822 WUBlastX LTR_Ngaro 8374 8712 85 + . . scaffold38822 GLEAN mRNA 229 9168 0.999998 - . ID=CGI_10003013; scaffold413 WUBlastX LTR_Ngaro 337450 338172 52 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 607325 607603 84 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 859757 859900 50 - . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX RC_Helitron 71711 72376 81 + . . . . . -1 -1 -1 . . . scaffold42302 WUBlastX DNA_hAT-Tip100 120976 121128 84 + . . . . . -1 -1 -1 . . . scaffold1452 WUBlastX DNA_Kolobok-IS4 69080 69610 78 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_Kolobok-IS4 516800 516871 33 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_Kolobok-IS4 517147 517287 31 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_Kolobok-IS4 517389 517484 31 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_I 394578 394877 59 - . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LTR_ERVK 89403 89546 35 - . . . . . -1 -1 -1 . . . scaffold25910 WUBlastX LTR_Gypsy 316 501 40 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_L1 599310 600080 55 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_Harbinger 584590 584769 70 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_Harbinger 243319 243492 84 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1578 WUBlastX DNA_Harbinger 117698 117910 79 + . . . . . -1 -1 -1 . . . scaffold37426 WUBlastX LTR_Gypsy 5791 5865 22 + . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LTR_Gypsy 93721 94227 77 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_MuDR 582164 582379 30 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold1155 WUBlastX LINE_Jockey 101562 101591 23 - . . . . . -1 -1 -1 . . . scaffold37892 WUBlastX LTR_Gypsy 12484 12777 66 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 149319 149396 57 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX DNA_TcMar-Marin 8229 8315 30 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX DNA_Kolobok 64978 65148 67 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1 632174 633058 34 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_L1-Tx1 209434 209691 21 - . . . . . -1 -1 -1 . . . scaffold37698 WUBlastX LINE_L1 43380 44174 61 - . . . . . -1 -1 -1 . . . C29506 WUBlastX LINE_L1 6091 6579 49 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_Penelope 47105 47539 58 - . . scaffold43660 GLEAN mRNA 33653 62551 0.969554 - . ID=CGI_10011660; scaffold1895 WUBlastX LINE_RTE-X 188909 189037 73 + . . scaffold1895 GLEAN mRNA 187950 192915 1 + . ID=CGI_10010985; scaffold1895 WUBlastX LINE_RTE-X 188909 189037 73 + . . scaffold1895 GLEAN mRNA 187702 201524 0.585578 - . ID=CGI_10010984; C29958 WUBlastX LINE_RTE-X 48 359 83 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_RTE-X 124735 124821 25 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_RTE-X 125804 125875 29 + . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX LINE_RTE-X 334984 335250 49 - . . scaffold43940 GLEAN mRNA 320005 345257 1 - . ID=CGI_10014162; scaffold973 WUBlastX LINE_RTE-X 111844 112059 57 - . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_RTE-RTE 111845 112033 64 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-X 96878 97021 95 + . . . . . -1 -1 -1 . . . scaffold40184 WUBlastX LINE_RTE-X 36263 36571 52 - . . . . . -1 -1 -1 . . . scaffold41228 WUBlastX LINE_RTE-X 7390 7755 22 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX DNA_TcMar-Marin 357961 358236 52 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Sola 880682 880939 74 - . . . . . -1 -1 -1 . . . scaffold43240 WUBlastX DNA_TcMar-Tc1 142421 142573 28 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 419486 419548 50 + . . . . . -1 -1 -1 . . . C30118 WUBlastX LINE_CR1-L2 284 463 117 + . . . . . -1 -1 -1 . . . scaffold109 WUBlastX DNA_TcMar-Tc1 253261 253410 29 - . . scaffold109 GLEAN mRNA 221861 297851 0.997753 - . ID=CGI_10022112; scaffold43538 WUBlastX LINE_L1 265432 265893 79 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LTR_Gypsy 49817 50128 24 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 754482 754673 78 + . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX LTR_DIRS? 17706 17918 86 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Ngaro 221473 221871 29 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 120436 121008 53 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LINE_Dong-R4 114567 114989 24 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 59174 59335 22 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Ngaro 581579 581770 82 + . . scaffold601 GLEAN mRNA 573889 582293 1 - . ID=CGI_10026837; C33482 WUBlastX LINE_L2 3851 4009 33 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Gypsy 34508 35182 70 - . . scaffold40440 GLEAN mRNA 16484 36402 0.811713 + . ID=CGI_10004142; scaffold1154 WUBlastX LTR_Gypsy 471983 472351 103 + . . . . . -1 -1 -1 . . . C29982 WUBlastX LTR_Gypsy 5555 5719 26 - . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX DNA_Harbinger 43735 43914 63 - . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold1249 WUBlastX DNA_Harbinger 36271 36354 31 + . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX DNA_Harbinger 36465 36536 54 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 474694 474948 45 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_I 367229 367318 24 + . . scaffold374 GLEAN mRNA 366575 367648 0.447148 + . ID=CGI_10018721; scaffold43026 WUBlastX DNA_IS4EU 183751 183840 25 - . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX RC_Helitron 59783 60142 110 + . . scaffold1603 GLEAN mRNA 44108 68236 0.999997 - . ID=CGI_10012816; scaffold117 WUBlastX DNA_Kolobok 247701 247835 33 - . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold42890 WUBlastX LINE_L1 200435 200530 29 + . . . . . -1 -1 -1 . . . scaffold33530 WUBlastX LINE_I 10646 10702 26 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Marin 418609 418794 34 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_Penelope 1187603 1187908 44 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_Penelope 128223 128357 34 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold1578 WUBlastX DNA_PiggyBac 40618 40812 33 - . . . . . -1 -1 -1 . . . scaffold1848 WUBlastX LINE_RTE-X 116895 117227 33 + . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_RTE-X 388252 388392 94 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 655720 655893 74 + . . . . . -1 -1 -1 . . . scaffold41968 WUBlastX LINE_RTE-X 79440 79547 28 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Tc1 465199 465282 33 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX DNA_TcMar-Tc1 52931 53299 86 + . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LINE_L1-Tx1 43730 43867 47 + . . . . . -1 -1 -1 . . . C31156 WUBlastX DNA_hAT 107 535 61 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_TcMar-Pogo 212338 212616 81 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_CR1-L2 227839 228171 100 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LINE_CR1-L2 324328 324954 69 + . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LINE_CR1-L2 103466 103834 64 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_Rex-Babar 132898 132942 20 + . . scaffold20 GLEAN mRNA 96944 140245 0.183716 - . ID=CGI_10023563; scaffold20 WUBlastX LINE_Rex-Babar 132898 132942 20 + . . scaffold20 GLEAN mRNA 129233 205190 0.240843 + . ID=CGI_10023564; scaffold983 WUBlastX LINE_CR1 170983 171222 80 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_L2 113190 113612 44 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold1551 WUBlastX LTR_Ngaro 115381 115479 62 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 146783 146965 62 - . . scaffold1009 GLEAN mRNA 143472 160185 0.373363 + . ID=CGI_10028719; scaffold41700 WUBlastX LTR_Gypsy 9660 10001 63 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LTR_Gypsy 796 942 50 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Gypsy 275497 275583 28 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Gypsy 14207 14629 95 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14207 14629 95 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold1353 WUBlastX DNA_IS4EU 70491 70784 100 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX DNA_Harbinger 359430 359543 68 - . . scaffold1462 GLEAN mRNA 348326 383431 0.995853 + . ID=CGI_10014386; scaffold365 WUBlastX LTR_Gypsy 227328 227435 23 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-BovB 604980 605240 35 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_TcMar-Fot1 54570 54866 79 - . . scaffold681 GLEAN mRNA 51586 54604 0.96497 + . ID=CGI_10014720; scaffold750 WUBlastX LTR_Ngaro 537758 537955 48 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_Kolobok 182209 182379 26 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 182524 182619 49 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1241 WUBlastX LINE_L1 207391 207690 80 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LINE_RTE-X 130120 130548 21 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 850353 850625 94 + . . scaffold784 GLEAN mRNA 848886 854519 0.990187 - . ID=CGI_10024446; scaffold433 WUBlastX DNA_PiggyBac 192012 192146 86 + . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy 96299 96970 64 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LTR_Gypsy 53502 53603 27 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-BovB 84695 84919 30 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_RTE-X 442052 442153 37 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-BovB 1048270 1048365 21 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 400616 401041 56 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_RTE-X 408718 408921 65 - . . scaffold443 GLEAN mRNA 402348 431121 0.212109 - . ID=CGI_10022775; scaffold544 WUBlastX DNA_TcMar-Tigge 738917 739033 35 + . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold880 WUBlastX DNA_TcMar-Tc1 358581 358931 81 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1-Tx1 687219 687560 51 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_CR1 89375 89605 71 + . . . . . -1 -1 -1 . . . scaffold182 WUBlastX LINE_CR1-L2 3774 4109 58 + . . . . . -1 -1 -1 . . . C22998 WUBlastX LINE_L1 126 311 62 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L2 138381 139232 46 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_DIRS 420902 421255 95 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 27584 27985 85 - . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_hAT-Tip100 334445 334666 105 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_L1-Tx1 194602 194655 23 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX DNA_Kolobok 46393 46623 25 + . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; C29244 WUBlastX DNA_TcMar-Marin 765 1043 27 + . . . . . -1 -1 -1 . . . scaffold91 WUBlastX DNA_TcMar-Marin 67666 67953 94 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 764313 764603 30 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-BovB 394565 394663 25 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Maverick 166923 167093 36 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Maverick 167199 167321 62 - . . . . . -1 -1 -1 . . . scaffold787 WUBlastX DNA_PiggyBac 82181 82369 36 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 974934 975317 78 - . . scaffold1532 GLEAN mRNA 970227 975953 0.953998 - . ID=CGI_10028277; scaffold1743 WUBlastX LINE_RTE-X 112087 112476 59 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Sola 379868 380293 114 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Sola 372903 373229 102 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_RTE-X 122088 122381 54 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Gypsy 382264 382473 22 - . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_L1-Tx1 7817 8458 41 - . . . . . -1 -1 -1 . . . scaffold39592 WUBlastX LINE_L1-Tx1 42873 43397 70 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_L1-Tx1 87039 87353 57 - . . . . . -1 -1 -1 . . . scaffold533 WUBlastX DNA_TcMar-Tc1 25479 25661 73 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062504 33 + . . scaffold168 GLEAN mRNA 1061165 1068516 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062504 33 + . . scaffold168 GLEAN mRNA 1061468 1075146 0.901342 - . ID=CGI_10025627; scaffold456 WUBlastX LTR_Copia 26533 26592 38 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Copia 88299 88358 38 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_CR1-L2 314738 315115 70 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; C32918 WUBlastX LINE_CR1 4422 4802 70 + . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_L2 48670 49053 69 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_L2 213034 213228 41 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy 564618 564857 67 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy 564893 565081 60 - . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_Harbinger 16650 16754 91 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX DNA_hAT 103519 103716 100 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold773 WUBlastX DNA_hAT 193778 194170 62 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; scaffold1832 WUBlastX DNA_Harbinger 398512 398844 98 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 130032 130214 41 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 130032 130214 41 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold1897 WUBlastX DNA_Kolobok 398784 399023 104 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 415651 416214 24 - . . scaffold854 GLEAN mRNA 397662 453116 0.849104 + . ID=CGI_10022252; scaffold1018 WUBlastX LINE_RTE-X 336940 337059 29 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Tigge 59172 59387 21 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_DIRS 372520 372858 77 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Sola 326514 326612 41 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Sola 326678 326998 54 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_L1-Tx1 149291 149383 24 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LTR_Pao 204386 204916 64 - . . scaffold315 GLEAN mRNA 198637 213809 0.999922 + . ID=CGI_10020410; scaffold907 WUBlastX LTR_Pao 11847 12314 33 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 664087 664215 45 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy 664217 664345 29 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; C14810 WUBlastX LTR_Gypsy 35 268 133 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Ngaro 554644 555570 51 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 1037480 1037716 128 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 120686 121048 29 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Ngaro 467309 467410 39 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold471 WUBlastX LINE_Penelope 728457 729047 63 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-BovB 203993 204367 57 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold38804 WUBlastX LINE_RTE-X 11045 11491 37 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_PiggyBac 90149 90415 133 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_RTE-BovB 35106 35339 37 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold1315 WUBlastX LINE_RTE-X 525705 526049 86 + . . scaffold1315 GLEAN mRNA 522066 545999 0.9886 + . ID=CGI_10021623; scaffold685 WUBlastX LINE_RTE-X 41884 42039 73 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX DNA_Sola 207953 208138 38 - . . scaffold43552 GLEAN mRNA 203091 219517 0.574406 + . ID=CGI_10011022; scaffold43552 WUBlastX DNA_Sola 207953 208138 38 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold1612 WUBlastX DNA_Sola 23 760 96 - . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX LINE_CR1 109788 109877 27 + . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold41304 WUBlastX LTR_Ngaro 56268 56336 24 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_hAT-Tip100 207876 208277 113 + . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_I 300164 300487 129 + . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX LINE_L1 60123 60677 107 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_DIRS 164171 164512 109 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_L1-Tx1 45460 45798 48 - . . . . . -1 -1 -1 . . . scaffold38116 WUBlastX LTR_Pao 2479 2832 169 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 102041 102268 26 + . . scaffold1759 GLEAN mRNA 83905 106418 0.889634 + . ID=CGI_10010906; scaffold1249 WUBlastX LTR_Gypsy 306370 306519 30 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LTR_Gypsy 306916 307023 85 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 548703 549089 134 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 757272 757415 92 - . . . . . -1 -1 -1 . . . scaffold993 WUBlastX LTR_Ngaro 87618 87836 129 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Ngaro 304287 304694 117 - . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX LTR_Ngaro 92508 92654 57 - . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LTR_DIRS 147404 148465 67 + . . scaffold1084 GLEAN mRNA 143113 160475 0.702333 + . ID=CGI_10010078; scaffold38920 WUBlastX DNA_hAT-Ac 62924 63328 137 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_Harbinger 40254 40400 97 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_Harbinger 41350 41439 31 - . . . . . -1 -1 -1 . . . C35006 WUBlastX DNA_IS4EU 1286 1516 42 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_L1 68384 68755 111 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX DNA_TcMar-Marin 358233 358787 69 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX DNA_TcMar-Marin 358742 358813 25 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_MuDR 552049 552270 97 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold1747 WUBlastX DNA_TcMar-Tc2 27300 27518 85 + . . . . . -1 -1 -1 . . . scaffold258 WUBlastX LINE_RTE-X 280226 280489 152 - . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_RTE-X 236319 236657 67 - . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LINE_RTE-X 56706 57089 120 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold90 WUBlastX DNA_Maverick 124933 125562 110 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX DNA_Sola 894956 895549 35 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1-Tx1 156857 157375 53 - . . . . . -1 -1 -1 . . . scaffold503 WUBlastX LINE_L1-Tx1 20973 21392 61 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_CR1-L2 303229 303348 42 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_CR1 447906 448511 44 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L2 1622814 1623119 35 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L2 30748 31521 103 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX DNA_Crypton 246242 246643 98 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Gypsy? 499452 500417 27 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 140640 140762 60 - . . scaffold626 GLEAN mRNA 111038 155634 0.745946 - . ID=CGI_10019981; scaffold626 WUBlastX DNA_Harbinger 141432 141572 92 - . . scaffold626 GLEAN mRNA 111038 155634 0.745946 - . ID=CGI_10019981; scaffold605 WUBlastX RC_Helitron 42729 42977 36 + . . scaffold605 GLEAN mRNA 41127 44213 1 + . ID=CGI_10004633; scaffold1024 WUBlastX DNA_IS4EU 1758683 1758961 162 + . . scaffold1024 GLEAN mRNA 1751618 1765575 0.556405 - . ID=CGI_10028585; scaffold313 WUBlastX DNA_Kolobok-IS4 611354 611683 109 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1 223198 223425 62 + . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-BovB 42040 42324 65 - . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_RTE-X 657576 657779 29 + . . . . . -1 -1 -1 . . . C31572 WUBlastX LINE_RTE-X 7623 7991 123 + . . . . . -1 -1 -1 . . . C21988 WUBlastX LTR_DIRS 669 827 24 + . . . . . -1 -1 -1 . . . C21988 WUBlastX LTR_DIRS 806 1459 72 + . . . . . -1 -1 -1 . . . C21988 WUBlastX LTR_DIRS 1477 1644 26 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX DNA_TcMar-Tc1 286382 287164 83 - . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 76008 76190 33 - . . scaffold138 GLEAN mRNA 71718 76716 0.998636 - . ID=CGI_10008427; scaffold1061 WUBlastX LTR_Pao 80066 82261 479 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LTR_Pao 164608 164676 24 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LTR_Pao 164801 165751 492 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 107157 107579 167 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_CR1-L2 422162 422974 463 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 682099 682683 125 - . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_RTE-X 28906 29325 252 + . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_RTE-X 29307 29492 79 + . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_RTE-X 30531 30776 48 + . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_RTE-X 30796 30957 84 + . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_RTE-X 31013 31417 170 + . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_RTE-X 31350 31775 288 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_CR1-L2 374549 376090 919 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L2 601027 602493 881 - . . scaffold625 GLEAN mRNA 587493 614849 0.872449 - . ID=CGI_10023425; scaffold625 WUBlastX LINE_L2 601027 602493 881 - . . scaffold625 GLEAN mRNA 593175 626759 0.878872 + . ID=CGI_10023426; scaffold1741 WUBlastX LTR_Gypsy-Cigr 140938 142515 1028 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Gypsy 647267 647623 277 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Gypsy 647838 648773 564 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 4729 4812 31 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_L2 117891 118313 100 + . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LINE_L2 90669 91076 106 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_CR1-L2 265266 265370 27 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX DNA_Crypton 128161 128331 78 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold252 WUBlastX LTR_Ngaro 181168 181263 44 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX RC_Helitron 74369 74740 158 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Harbinger 122246 122386 57 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Harbinger 122641 122787 62 - . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LINE_L1 106585 106671 20 + . . . . . -1 -1 -1 . . . scaffold1692 WUBlastX LINE_L1-Tx1 52510 52650 36 - . . scaffold1692 GLEAN mRNA 40202 58829 0.152045 + . ID=CGI_10004025; scaffold1692 WUBlastX LINE_L1-Tx1 52677 53060 90 - . . scaffold1692 GLEAN mRNA 40202 58829 0.152045 + . ID=CGI_10004025; scaffold1763 WUBlastX LINE_RTE-X 537865 538140 116 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 228433 229152 133 + . . . . . -1 -1 -1 . . . scaffold1184 WUBlastX LTR_Ngaro 9122 9322 91 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_DIRS 162079 162540 130 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Sola 1270602 1271207 79 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Gypsy 254396 255436 825 + . . . . . -1 -1 -1 . . . scaffold35438 WUBlastX LINE_L1-Tx1 11301 11948 244 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_L1-Tx1 12025 12810 187 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; C32026 WUBlastX LTR_Pao 9591 10679 1102 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LTR_Ngaro 288887 290488 1034 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Ngaro 518298 519899 1030 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L1-Tx1 599958 600752 322 + . . . . . -1 -1 -1 . . . scaffold1595 WUBlastX LINE_L2 11818 12495 113 - . . . . . -1 -1 -1 . . . scaffold39352 WUBlastX LINE_L2 31344 32057 113 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Ngaro 223521 223766 174 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold975 WUBlastX LTR_DIRS 349444 349854 134 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 300918 301223 119 - . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_DIRS? 11417 11494 45 + . . . . . -1 -1 -1 . . . C28348 WUBlastX LTR_Gypsy 3411 3479 23 + . . C28348 GLEAN mRNA 161 3806 1 - . ID=CGI_10000423; scaffold1546 WUBlastX DNA_IS4EU 218834 219124 57 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_Kolobok 483697 484017 85 - . . scaffold599 GLEAN mRNA 483470 484330 1 + . ID=CGI_10021728; scaffold599 WUBlastX DNA_Kolobok 483697 484017 85 - . . scaffold599 GLEAN mRNA 478283 491770 0.99915 - . ID=CGI_10021727; scaffold433 WUBlastX LINE_L1 21813 22010 92 + . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LINE_L2 148094 148759 71 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 634557 634802 85 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 635099 635401 45 + . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LINE_RTE-X 35391 35489 44 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_Maverick 135503 135862 123 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX DNA_Maverick 85618 85917 109 - . . . . . -1 -1 -1 . . . C31910 WUBlastX DNA_TcMar-Tc2 3723 3872 89 - . . . . . -1 -1 -1 . . . scaffold34780 WUBlastX LINE_L1-Tx1 20288 20644 114 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 400992 401264 78 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 577696 577917 59 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_L1-Tx1 559397 560257 36 + . . . . . -1 -1 -1 . . . scaffold1727 WUBlastX RC_Helitron 20030 22225 756 + . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_L1-Tx1 256249 256830 221 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 257204 257611 310 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 257599 258042 241 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 257975 258349 127 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 258622 259512 46 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold1100 WUBlastX LINE_RTE-X 185110 185862 74 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 525425 525754 203 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 526439 526696 207 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_L2 222628 223401 193 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_L2 223401 224714 687 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_hAT-Tip100 696 1565 372 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_hAT-Tip100 1577 3127 725 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 97002 99341 919 - . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LINE_L2 3448 4392 432 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX RC_Helitron 189901 190287 21 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_L2 276294 276371 23 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 857576 857713 85 + . . . . . -1 -1 -1 . . . scaffold30716 WUBlastX LINE_L2 337 447 59 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LTR_Gypsy-Cigr 67731 68279 148 - . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_Ngaro 52111 52767 143 + . . . . . -1 -1 -1 . . . scaffold41034 WUBlastX DNA_Academ 56996 57256 72 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold1245 WUBlastX LTR_DIRS 213299 213571 87 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 514345 514611 153 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX DNA_hAT-Tip100 795166 795399 173 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_hAT-Tip100 955244 955477 168 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_MuDR 95858 96079 21 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Penelope 181800 181994 76 - . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX LINE_Penelope 39670 40131 160 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold321 WUBlastX LTR_Gypsy 229431 230081 75 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Pao 262981 263226 181 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy 27108 27638 74 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 691496 691705 139 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy-Cigr 1098261 1098950 144 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold43 WUBlastX LTR_Pao 81009 81503 77 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_CR1-L2 506361 506600 136 - . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LINE_L2 5229 5945 137 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L2 549872 550462 137 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L2 230988 231497 155 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_DIRS 1116797 1117324 51 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_DIRS 1117264 1117701 62 + . . . . . -1 -1 -1 . . . scaffold32086 WUBlastX LTR_Ngaro 642 1550 143 + . . . . . -1 -1 -1 . . . scaffold33832 WUBlastX DNA_Harbinger 12758 13150 145 + . . scaffold33832 GLEAN mRNA 12785 13183 0.717777 + . ID=CGI_10001154; scaffold1722 WUBlastX DNA_Harbinger 226063 226218 39 - . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_Harbinger 226181 226525 137 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_Penelope 148808 149569 94 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_TcMar-Marin 49664 49984 186 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 59460 60041 175 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_RTE-BovB 13174 13314 52 + . . . . . -1 -1 -1 . . . C34856 WUBlastX LINE_L1-Tx1 6317 7141 42 - . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold1409 WUBlastX LINE_RTE-BovB 137952 139016 1288 - . . scaffold1409 GLEAN mRNA 123560 153776 0.210676 - . ID=CGI_10013783; scaffold37358 WUBlastX LINE_CR1 35717 35992 144 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L2 285648 285986 103 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold1039 WUBlastX LINE_CR1 9585 10115 385 - . . . . . -1 -1 -1 . . . scaffold38908 WUBlastX LINE_RTE-X 60474 62357 683 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_CR1-L2 721426 721587 26 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 438362 438808 79 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LTR_DIRS 124645 125439 142 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 10217 10513 71 + . . . . . -1 -1 -1 . . . C31304 WUBlastX LTR_Gypsy 7562 8416 144 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 126063 126650 197 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LINE_Penelope 101852 102289 103 - . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold321 WUBlastX LINE_RTE-X 477411 477629 98 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold43630 WUBlastX LINE_RTE-X 56494 57039 174 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_DIRS 1117345 1117701 70 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_DIRS 1117743 1117853 29 + . . . . . -1 -1 -1 . . . scaffold41572 WUBlastX LINE_RTE-X 21455 22087 424 + . . . . . -1 -1 -1 . . . scaffold41572 WUBlastX LINE_RTE-X 22087 23352 872 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Gypsy 178984 179376 364 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Gypsy 180112 180702 223 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Gypsy 180698 181123 116 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-BovB 1030781 1031248 431 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-BovB 1031397 1032293 613 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-BovB 1032704 1033099 284 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-BovB 1033056 1033190 49 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Pao 609927 610235 202 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Pao 157469 157777 193 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 438433 438597 44 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold934 WUBlastX LTR_Ngaro 410478 410786 178 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX DNA_IS4EU 134674 134940 132 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Harbinger 734531 734722 51 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 82904 83008 30 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold1004 WUBlastX LINE_L1-Tx1 196336 196446 22 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_PiggyBac 242232 242390 57 - . . . . . -1 -1 -1 . . . scaffold43664 WUBlastX LINE_RTE-X 214197 214661 177 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold160 WUBlastX LTR_Gypsy 476171 476836 234 - . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_Maverick 171846 172214 189 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold101 WUBlastX LTR_Gypsy 509390 509791 323 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 77153 79825 989 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Pao 293059 293172 72 - . . . . . -1 -1 -1 . . . scaffold42046 WUBlastX DNA_Crypton 80825 81088 110 - . . scaffold42046 GLEAN mRNA 66824 100858 0.352028 - . ID=CGI_10006003; scaffold42046 WUBlastX DNA_Crypton 81096 81380 95 - . . scaffold42046 GLEAN mRNA 66824 100858 0.352028 - . ID=CGI_10006003; scaffold1896 WUBlastX LTR_Ngaro 483439 483717 111 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold441 WUBlastX DNA_IS4EU 43224 43643 81 + . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_L1 18815 18937 38 - . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_L1 18940 19320 163 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 284807 285181 136 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_RTE-X 240249 240929 125 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 37539 37721 178 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 482250 485660 1662 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 488972 492382 1662 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy-Cigr 109664 109954 31 - . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX LTR_Gypsy 82436 82684 178 + . . . . . -1 -1 -1 . . . C35794 WUBlastX LINE_L2 13174 13491 111 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_Kolobok-IS4 19881 20042 34 - . . . . . -1 -1 -1 . . . scaffold1727 WUBlastX RC_Helitron 41698 42663 125 - . . scaffold1727 GLEAN mRNA 27437 43036 0.635377 + . ID=CGI_10002672; scaffold502 WUBlastX LTR_Gypsy 252926 253048 58 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_L1-Tx1 128695 129264 138 + . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-X 10944 11123 83 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_RTE-X 286773 287072 71 - . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_RTE-X 287066 287548 51 - . . . . . -1 -1 -1 . . . scaffold682 WUBlastX LINE_L1-Tx1 19631 20251 188 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 437581 438201 188 - . . scaffold1213 GLEAN mRNA 436828 438219 0.982039 - . ID=CGI_10027451; scaffold152 WUBlastX LINE_L1-Tx1 336503 337123 185 - . . scaffold152 GLEAN mRNA 335750 337141 0.992563 - . ID=CGI_10014900; scaffold152 WUBlastX LINE_L1-Tx1 336503 337123 185 - . . scaffold152 GLEAN mRNA 326766 349856 0.295405 + . ID=CGI_10014899; scaffold188 WUBlastX DNA_Zator 12383 12556 32 + . . scaffold188 GLEAN mRNA 7770 17806 0.999204 + . ID=CGI_10009311; scaffold39274 WUBlastX LINE_CR1 28245 28859 223 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_L2-Hydra 109548 109907 82 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Ngaro 453974 454150 43 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Ngaro 454119 454472 139 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 428301 428519 115 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 150251 150724 29 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_Jockey 126127 126339 28 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 534006 534140 27 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 77119 77526 110 + . . . . . -1 -1 -1 . . . scaffold1585 WUBlastX DNA_NOF 276053 276958 176 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_RTE-BovB 5112 5411 21 + . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LTR_Pao 254834 257161 1059 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 623045 623326 154 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold1589 WUBlastX LTR_Gypsy-Cigr 264756 265484 500 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 266278 267018 566 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 266952 267437 339 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX DNA_TcMar-Tc1 141340 141660 147 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 368377 368736 153 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_Rex-Babar 131187 133022 35 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold1832 WUBlastX LINE_L2 546275 547114 61 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 200645 200737 48 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 200740 201081 154 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_IS4EU 4134 5012 204 - . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold170 WUBlastX LTR_Ngaro 158415 158681 116 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LTR_Ngaro 158659 158973 107 - . . . . . -1 -1 -1 . . . scaffold35874 WUBlastX DNA_TcMar-Tc1 22238 22675 46 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1 323921 324151 34 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LINE_L1-Tx1 45222 45422 31 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LINE_L1-Tx1 46588 46824 92 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 761968 762546 149 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 641897 642052 69 - . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LINE_RTE-X 139132 139593 96 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_RTE-X 92046 92267 151 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold1692 WUBlastX LINE_L1-Tx1 52955 53461 58 - . . scaffold1692 GLEAN mRNA 40202 58829 0.152045 + . ID=CGI_10004025; scaffold885 WUBlastX LTR_Gypsy 927315 928712 1085 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Pao 578598 579557 53 + . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX LTR_DIRS 53524 53661 66 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Gypsy 917996 918109 23 + . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Gypsy 104012 104611 188 + . . scaffold1851 GLEAN mRNA 98297 105350 0.387171 - . ID=CGI_10005104; scaffold39424 WUBlastX DNA_Kolobok-IS4 60462 61169 155 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_L1 58789 59454 215 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_Penelope 87596 88585 91 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_NOF 64596 65213 217 + . . scaffold1014 GLEAN mRNA 64220 75452 0.980298 + . ID=CGI_10020260; scaffold585 WUBlastX LINE_RTE-BovB 106932 107093 106 + . . scaffold585 GLEAN mRNA 91313 107443 0.999351 - . ID=CGI_10005541; scaffold585 WUBlastX LINE_RTE-BovB 108278 108400 39 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 9477 9878 252 - . . . . . -1 -1 -1 . . . C28310 WUBlastX LINE_Proto2 1543 1863 51 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 556650 556775 32 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold37472 WUBlastX LINE_L1-Tx1 30668 30853 61 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_TcMar-Tc1 242061 243074 165 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX DNA_TcMar-Tc1 170808 171722 109 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy-Cigr 696744 697907 772 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Ngaro 299038 299412 123 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_Penelope 276250 276882 192 + . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1 170658 170729 29 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Kolobok 674236 674484 141 - . . scaffold880 GLEAN mRNA 673595 686654 0.926854 - . ID=CGI_10022204; scaffold144 WUBlastX LINE_RTE-X 657809 657904 59 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 482979 485762 1952 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 489701 492484 1952 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_CR1-L2 51495 51860 136 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LTR_Ngaro 216706 217638 134 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 46479 47000 152 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX DNA_hAT-Tip100 640300 640797 117 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX DNA_hAT-Tip100 641273 641380 66 + . . . . . -1 -1 -1 . . . scaffold43278 WUBlastX LINE_Penelope 80350 80514 54 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 723193 723672 145 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy-Cigr 550415 553201 2093 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold591 WUBlastX LINE_CR1-L2 71166 71258 34 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 860522 860620 22 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold602 WUBlastX LINE_Penelope 71012 71128 21 - . . . . . -1 -1 -1 . . . C34562 WUBlastX LTR_Ngaro 1811 1936 21 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Maverick 331129 331590 189 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_RTE-X 313213 313470 45 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Pao 386455 389295 931 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 800706 801125 233 + . . . . . -1 -1 -1 . . . C34726 WUBlastX DNA_Maverick 4299 4454 134 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_RTE-X 266592 267701 157 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 922634 923026 82 + . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX LTR_Pao 432 521 69 + . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX LTR_Pao 520 2355 1454 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Pao 12065 12352 85 + . . . . . -1 -1 -1 . . . scaffold39352 WUBlastX LINE_Jockey 57774 57962 47 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_L2 105858 107399 203 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_L2 57128 57202 27 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX DNA_IS4EU 401709 402068 95 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold1541 WUBlastX LINE_L1 465909 466481 264 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 57132 57293 115 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold11 WUBlastX LINE_RTE-BovB 316703 317968 151 - . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LINE_RTE-X 87836 88210 230 - . . . . . -1 -1 -1 . . . scaffold400 WUBlastX DNA_Sola 288573 289418 266 + . . scaffold400 GLEAN mRNA 275762 290092 0.47452 - . ID=CGI_10011441; scaffold1560 WUBlastX LINE_L1-Tx1 241881 242072 66 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_CR1-L2 29768 29848 30 + . . . . . -1 -1 -1 . . . scaffold1824 WUBlastX LTR_DIRS 96543 97169 100 + . . . . . -1 -1 -1 . . . scaffold32912 WUBlastX LTR_Ngaro 5492 5839 246 + . . . . . -1 -1 -1 . . . scaffold40960 WUBlastX LINE_RTE-X 22177 22527 162 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 132340 132462 54 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-X 117856 118038 66 - . . scaffold689 GLEAN mRNA 118031 118420 1 - . ID=CGI_10014824; scaffold689 WUBlastX LINE_RTE-X 118058 118435 149 - . . scaffold689 GLEAN mRNA 118031 118420 1 - . ID=CGI_10014824; scaffold689 WUBlastX LINE_RTE-X 118458 118613 107 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Pao 58081 59313 294 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_DIRS 407078 407899 251 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 534268 534846 55 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Harbinger 62504 63124 261 + . . . . . -1 -1 -1 . . . scaffold39526 WUBlastX LTR_Ngaro 60008 60943 187 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_NOF 61882 62265 315 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_Sola 523683 524330 110 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 695299 698646 2618 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 551500 552525 250 - . . scaffold1018 GLEAN mRNA 547902 567181 0.39343 + . ID=CGI_10019779; scaffold43680 WUBlastX DNA_Harbinger 163214 163609 143 + . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_Harbinger 163602 163742 114 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX DNA_TcMar-Marin 46468 46803 72 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT-Tip100 10926 11183 53 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT-Tip100 12364 12675 102 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT-Tip100 12783 13490 106 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 88779 88922 109 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 78487 79017 116 + . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LTR_Gypsy 48763 48900 25 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; C34408 WUBlastX LINE_L1-Tx1 18067 18486 331 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 728988 729197 27 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 737251 737565 117 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_CR1 365749 366051 226 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 422813 423100 192 + . . . . . -1 -1 -1 . . . C25392 WUBlastX DNA_Sola 888 1070 98 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 576231 576530 79 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 576359 577828 144 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold488 WUBlastX LTR_Gypsy 63795 64379 240 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 342931 343140 135 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold208 WUBlastX LINE_RTE-BovB 33368 34027 169 + . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-X 11282 11494 87 + . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-X 11660 12262 54 + . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LINE_L2 3029 4090 281 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 198936 199016 32 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold252 WUBlastX LINE_L2 251110 251646 319 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 62566 62958 55 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_Kolobok 102604 102846 57 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_L1-Tx1 11879 12214 80 + . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_RTE-X 38714 39601 208 + . . . . . -1 -1 -1 . . . scaffold1203 WUBlastX LINE_RTE-X 145237 145800 220 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 148212 148409 44 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 164249 164479 82 + . . . . . -1 -1 -1 . . . scaffold49 WUBlastX LINE_CR1-L2 192919 193917 304 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_L1 96453 96509 25 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 59517 60731 201 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 88948 89043 43 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_RTE-X 555296 556234 288 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 370052 370867 376 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 11951 12115 99 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 12738 13001 60 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 322521 323543 272 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Ngaro 45521 46543 272 - . . . . . -1 -1 -1 . . . scaffold93 WUBlastX DNA_Harbinger 38550 39281 376 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_I 424487 424858 35 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_RTE-X 272040 272567 191 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LINE_RTE-X 274170 274622 262 - . . scaffold801 GLEAN mRNA 264907 277016 0.581073 - . ID=CGI_10024082; scaffold39900 WUBlastX DNA_Maverick 57308 57910 375 + . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_PiggyBac 23901 24110 71 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_PiggyBac 24070 24684 315 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_PiggyBac 459815 460072 38 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_PiggyBac 460066 460389 167 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_PiggyBac 460401 460979 227 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_L1-Tx1 1002569 1002673 63 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L2 862189 862941 307 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LTR_DIRS? 62259 62411 116 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_IS4EU 104503 105033 310 + . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold655 WUBlastX LINE_R2-Hero 223045 223695 99 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_R2-Hero 224187 224348 58 - . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX DNA_PiggyBac 12413 12562 42 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX DNA_PiggyBac 12559 12915 248 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold1009 WUBlastX LINE_RTE-BovB 790420 790680 99 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 644870 645238 261 - . . . . . -1 -1 -1 . . . C34110 WUBlastX LINE_RTE-X 1096 1863 257 - . . . . . -1 -1 -1 . . . scaffold1838 WUBlastX LINE_RTE-X 385158 386090 334 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Ngaro 454391 454645 99 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Ngaro 455689 455856 67 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1 736137 736328 42 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Ngaro 24351 24869 183 + . . scaffold1397 GLEAN mRNA 22041 34038 0.684002 - . ID=CGI_10017113; scaffold42128 WUBlastX DNA_TcMar-Tc1 12170 12727 278 + . . scaffold42128 GLEAN mRNA 1970 15266 0.99078 + . ID=CGI_10006194; scaffold1699 WUBlastX LTR_Gypsy 57358 57501 44 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 115729 115893 84 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 116323 116430 62 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_RTE-BovB 104609 105244 249 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_DIRS 419437 419745 84 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_DIRS 419766 419999 87 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_DIRS 420035 420490 236 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Ngaro 489235 489375 61 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Ngaro 489462 489776 211 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Ngaro 489775 490041 156 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Ngaro 40542 40802 176 - . . . . . -1 -1 -1 . . . scaffold35380 WUBlastX LINE_RTE-X 3823 4719 355 + . . . . . -1 -1 -1 . . . scaffold38576 WUBlastX LINE_L2 38998 39792 317 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LTR_Gypsy 71885 72379 251 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_RTE-X 761516 762196 250 + . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_RTE-X 33105 33266 87 - . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX LINE_RTE-X 71828 72163 129 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 318093 318626 295 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 319739 319918 39 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX DNA_En-Spm 493708 494280 359 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX DNA_En-Spm 494291 494440 77 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Gypsy 14853 15818 396 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_TcMar-Fot1 218979 220175 425 - . . . . . -1 -1 -1 . . . scaffold825 WUBlastX DNA_Merlin 60816 61565 368 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_Penelope 103606 103698 41 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_Penelope 103697 103930 108 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_Penelope 103932 104846 204 + . . . . . -1 -1 -1 . . . C31912 WUBlastX LINE_RTE-X 1 1296 307 - . . . . . -1 -1 -1 . . . scaffold1485 WUBlastX LINE_RTE-X 48165 48551 133 - . . scaffold1485 GLEAN mRNA 39332 48639 0.999437 - . ID=CGI_10003293; scaffold374 WUBlastX LINE_CR1 125743 127134 354 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Gypsy 193655 194092 148 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold1186 WUBlastX LINE_Penelope 123286 123717 169 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX DNA_hAT-Tip100 4955 5080 63 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_TcMar-Marin 186675 187070 189 + . . scaffold43844 GLEAN mRNA 182095 193587 0.917611 + . ID=CGI_10013151; scaffold1423 WUBlastX LINE_L1-Tx1 978278 979918 287 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 549611 549958 33 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LINE_L2 47785 47979 86 + . . scaffold42530 GLEAN mRNA 44450 55395 0.966018 + . ID=CGI_10007161; scaffold94 WUBlastX LTR_Gypsy 105367 106584 490 - . . . . . -1 -1 -1 . . . scaffold43302 WUBlastX DNA_PiggyBac 59408 59938 177 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold43302 WUBlastX DNA_PiggyBac 59938 60333 211 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold675 WUBlastX DNA_Maverick 28665 29588 230 - . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX DNA_NOF 201456 201608 40 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 201743 201994 37 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 202186 202485 213 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 202713 202949 117 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1686 WUBlastX LTR_Gypsy 29346 29969 38 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX DNA_Academ 133286 133483 87 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 70153 70905 486 + . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold983 WUBlastX DNA_Maverick 134510 135034 161 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_Maverick 135020 135430 171 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LTR_Pao 179416 179622 187 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_CR1-L2 44236 44325 24 - . . scaffold1179 GLEAN mRNA 39144 50414 0.726285 + . ID=CGI_10027340; scaffold42306 WUBlastX LINE_RTE-X 39601 40323 496 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 647420 647626 52 - . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_L2 135695 136594 486 - . . scaffold294 GLEAN mRNA 124940 137273 0.889486 - . ID=CGI_10010334; scaffold86 WUBlastX DNA_Kolobok-IS4 1474032 1475018 503 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 803015 804145 214 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 804094 804414 130 - . . . . . -1 -1 -1 . . . scaffold559 WUBlastX DNA_Kolobok 38044 38547 272 + . . . . . -1 -1 -1 . . . scaffold559 WUBlastX DNA_Kolobok 39426 39605 67 + . . . . . -1 -1 -1 . . . scaffold559 WUBlastX DNA_Kolobok 39642 39794 108 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Ngaro 28043 28972 184 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_L1-Tx1 289135 290391 416 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1-Tx1 171048 171233 31 + . . scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold1562 WUBlastX LINE_CR1 123042 123146 28 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_Gypsy-Cigr 450984 451421 304 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_IS4EU 528442 529104 218 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_IS4EU 529858 530148 35 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_IS4EU 530737 531303 243 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_L1 177412 177627 93 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_DIRS 263308 263628 55 + . . . . . -1 -1 -1 . . . scaffold1261 WUBlastX LINE_L1-Tx1 21319 21612 26 - . . . . . -1 -1 -1 . . . scaffold139 WUBlastX DNA_Helitron 20093 20950 362 - . . . . . -1 -1 -1 . . . scaffold42568 WUBlastX LINE_RTE-BovB 9351 9605 166 - . . . . . -1 -1 -1 . . . scaffold42568 WUBlastX LINE_RTE-BovB 9912 11447 259 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_L1-Tx1 84721 85107 67 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 85380 86333 193 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold1603 WUBlastX LTR_Pao 331560 331601 27 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold885 WUBlastX DNA_Sola 918715 918885 24 + . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 103426 103674 104 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 103815 104132 217 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1696 WUBlastX LTR_DIRS 78791 79165 86 + . . . . . -1 -1 -1 . . . scaffold1696 WUBlastX LTR_DIRS 79415 79813 165 + . . . . . -1 -1 -1 . . . scaffold1696 WUBlastX LTR_DIRS 80076 80690 201 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1 545549 545851 81 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1-Tx1 211984 212277 174 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_L1-Tx1 212310 212912 412 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold640 WUBlastX LINE_RTE-X 78588 79748 507 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_RTE-X 555803 556117 65 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 591380 591511 37 + . . . . . -1 -1 -1 . . . scaffold1901 WUBlastX LINE_CR1-L2 21247 22398 152 + . . . . . -1 -1 -1 . . . scaffold1901 WUBlastX LINE_CR1-L2 21247 21681 166 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1 108036 109442 154 + . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L1-Tx1 35444 36142 397 + . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L1-Tx1 36186 36878 167 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_hAT-hATw 255980 257428 286 - . . . . . -1 -1 -1 . . . C28044 WUBlastX LINE_Penelope 3618 5099 584 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_L2 32487 33020 359 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold142 WUBlastX LTR_Gypsy 1227662 1227742 25 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_RTE-X 930951 932027 577 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Harbinger 393241 393564 322 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Harbinger 393714 394052 288 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Harbinger 394256 394306 32 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy 67901 68245 260 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold1024 WUBlastX LTR_Pao 160406 160531 26 + . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 13565 13882 45 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L2 201616 202695 686 + . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold39900 WUBlastX DNA_Maverick 60275 61318 710 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LTR_Pao 187277 188590 730 + . . . . . -1 -1 -1 . . . scaffold1091 WUBlastX LTR_Gypsy 334 1992 682 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1-Tx1 327928 329469 257 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_CR1 46796 47329 262 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 197978 199012 315 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 412534 412893 84 - . . . . . -1 -1 -1 . . . scaffold1266 WUBlastX LTR_Ngaro 59528 59854 192 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_Harbinger 157872 157979 43 - . . scaffold448 GLEAN mRNA 153677 169530 0.957711 + . ID=CGI_10024934; scaffold448 WUBlastX DNA_Harbinger 157984 158913 708 - . . scaffold448 GLEAN mRNA 153677 169530 0.957711 + . ID=CGI_10024934; scaffold33082 WUBlastX LINE_RTE-X 6605 7423 493 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold38510 WUBlastX DNA_Sola 27743 27997 86 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 28684 28986 131 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 30674 30877 136 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold1213 WUBlastX LTR_Ngaro 1298341 1298493 109 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Ngaro 1298700 1299497 497 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_hAT-Tip100 52749 53153 228 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_hAT-Tip100 53625 54170 508 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1 497048 497740 44 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_DIRS 465403 466386 752 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 127729 127866 30 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Pao 754654 754788 28 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Pao 754761 754988 95 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Pao 755062 755718 65 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 84393 85721 542 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold1213 WUBlastX LTR_Gypsy-Cigr 1236412 1237281 585 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy-Cigr 87193 87519 151 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX RC_Helitron 437219 437503 109 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 437499 437846 210 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 437852 438349 316 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 438355 438774 50 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 438743 439114 118 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; C31144 WUBlastX LTR_Gypsy 7811 8725 758 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX DNA_Academ 162238 163875 835 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 78562 80217 632 - . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_L1 237044 238585 290 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 19789 20208 153 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX RC_Helitron 39193 40149 334 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 25225 27840 638 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 268741 269292 68 - . . . . . -1 -1 -1 . . . scaffold1281 WUBlastX LTR_DIRS 8053 8259 108 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 10090 10386 194 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1589 WUBlastX LTR_Gypsy 593825 595015 961 + . . scaffold1589 GLEAN mRNA 592118 603104 0.965132 - . ID=CGI_10024122; scaffold1625 WUBlastX LTR_Copia 154798 155040 43 - . . scaffold1625 GLEAN mRNA 154393 155445 0.999064 - . ID=CGI_10007531; scaffold43314 WUBlastX LTR_Copia 137117 137245 31 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_hAT-Tip100 955262 955546 58 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_DIRS 13836 14063 77 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_CR1 155064 155363 51 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold818 WUBlastX LINE_CR1-L2 57048 57086 27 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_L2 472365 472418 31 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_CR1 43508 43960 79 - . . scaffold606 GLEAN mRNA 43859 44197 0.901376 - . ID=CGI_10012938; scaffold885 WUBlastX LINE_CR1 256205 256657 79 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_CR1 794512 794964 79 - . . . . . -1 -1 -1 . . . scaffold42030 WUBlastX LINE_CR1 77178 77630 79 + . . scaffold42030 GLEAN mRNA 73599 103190 0.98897 + . ID=CGI_10006046; scaffold1656 WUBlastX LTR_DIRS 62997 63104 41 + . . scaffold1656 GLEAN mRNA 45907 73911 0.308617 - . ID=CGI_10006142; scaffold20 WUBlastX LTR_Ngaro 730048 730101 28 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 730116 730253 59 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_L2 3267 3554 39 - . . . . . -1 -1 -1 . . . C34876 WUBlastX LINE_L2 12242 12541 37 + . . . . . -1 -1 -1 . . . C34876 WUBlastX LINE_L2 12708 12833 40 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Gypsy 533760 533957 36 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Gypsy 534070 534117 31 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Gypsy 534128 534214 31 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold243 WUBlastX LTR_Gypsy 119476 119916 48 - . . scaffold243 GLEAN mRNA 119766 120167 0.777732 - . ID=CGI_10006818; scaffold243 WUBlastX LTR_Gypsy 119476 119916 48 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold1682 WUBlastX LTR_Gypsy 430862 431257 56 + . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX DNA_hAT-Blackja 92089 92313 50 - . . scaffold41206 GLEAN mRNA 89947 111236 0.995535 - . ID=CGI_10004793; scaffold425 WUBlastX DNA_IS4EU 462528 462827 44 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 462968 463087 23 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX DNA_IS4EU 641763 642071 25 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX DNA_IS4EU 234582 234680 50 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX DNA_IS4EU 52202 52348 23 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold43358 WUBlastX DNA_IS4EU 219021 219146 36 - . . scaffold43358 GLEAN mRNA 218442 219604 0.593251 - . ID=CGI_10009980; scaffold712 WUBlastX LTR_Gypsy 135093 135356 85 - . . . . . -1 -1 -1 . . . C26628 WUBlastX DNA_Harbinger 2656 2805 65 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Harbinger 171756 171986 67 - . . . . . -1 -1 -1 . . . scaffold27810 WUBlastX DNA_Harbinger 3536 3685 65 + . . . . . -1 -1 -1 . . . scaffold713 WUBlastX DNA_Harbinger 71 220 62 - . . . . . -1 -1 -1 . . . scaffold41766 WUBlastX LTR_Gypsy 31418 31501 21 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold950 WUBlastX LTR_Gypsy 7056 7547 54 - . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LTR_Gypsy 170078 170668 65 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Kolobok 292995 293183 37 - . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold626 WUBlastX DNA_Kolobok 319659 319799 38 + . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX LINE_L1 108025 108489 73 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold168 WUBlastX DNA_MuDR 179668 179853 24 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold1138 WUBlastX DNA_MuDR 183260 183433 66 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_MuDR 1229420 1229791 73 - . . scaffold471 GLEAN mRNA 1226022 1238861 0.423333 - . ID=CGI_10027038; scaffold773 WUBlastX DNA_TcMar-Marin 210334 210480 73 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LINE_Penelope 53786 53998 27 - . . scaffold772 GLEAN mRNA 32739 66911 0.999897 - . ID=CGI_10016575; scaffold43818 WUBlastX LINE_RTE-BovB 32610 32837 64 + . . . . . -1 -1 -1 . . . scaffold633 WUBlastX LINE_RTE-X 65897 66085 53 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-X 130953 131114 52 + . . . . . -1 -1 -1 . . . scaffold1600 WUBlastX LINE_RTE-BovB 196007 196168 52 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold1855 WUBlastX LINE_RTE-X 201339 201620 47 + . . scaffold1855 GLEAN mRNA 188156 207855 0.999324 - . ID=CGI_10008876; scaffold363 WUBlastX LINE_RTE-RTE 360357 360524 22 + . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX DNA_PiggyBac 53949 53993 22 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_Penelope 321624 322082 36 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-X 218265 218420 35 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LINE_RTE-X 87360 87554 28 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-X 279762 280010 32 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_RTE-X 147254 147361 41 - . . scaffold143 GLEAN mRNA 117664 149411 0.999949 + . ID=CGI_10010012; scaffold1343 WUBlastX LINE_RTE-X 9926 10069 63 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 999068 999262 59 + . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX LINE_RTE-X 113251 113511 28 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold43920 WUBlastX LINE_RTE-X 357992 358171 84 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold226 WUBlastX LINE_RTE-BovB 1052360 1052854 43 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold313 WUBlastX LINE_RTE-BovB 1037095 1037385 81 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_RTE-X 225799 226095 43 - . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_RTE-X 2751 2984 46 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 117201 117752 86 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_TcMar-Marin 564723 564866 76 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold1682 WUBlastX LINE_L1-Tx1 429952 430212 42 - . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_L1-Tx1 318817 318975 61 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_TcMar-Tc1 528642 528923 49 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 419212 419355 52 + . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_TcMar-Marin 280650 281018 53 + . . . . . -1 -1 -1 . . . scaffold1405 WUBlastX LINE_L1-Tx1 26794 26955 69 - . . . . . -1 -1 -1 . . . C10475 WUBlastX LINE_L1-Tx1 3 149 50 - . . . . . -1 -1 -1 . . . C8127 WUBlastX LINE_L1-Tx1 8 115 47 - . . . . . -1 -1 -1 . . . scaffold31222 WUBlastX LINE_CR1 2851 3363 36 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_L2 486084 486398 63 + . . scaffold1554 GLEAN mRNA 475769 486188 0.34149 + . ID=CGI_10017375; scaffold1866 WUBlastX LINE_L2 204721 204900 73 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_L2 222862 223041 80 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1551 WUBlastX LTR_Copia 110361 110732 37 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_I 224279 224623 59 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold43026 WUBlastX DNA_TcMar-ISRm1 164318 164491 97 - . . . . . -1 -1 -1 . . . scaffold738 WUBlastX DNA_hAT-Tip100 1818 2153 63 + . . scaffold738 GLEAN mRNA 1336 4448 1 + . ID=CGI_10000540; scaffold1702 WUBlastX DNA_hAT-Ac 17582 17881 70 - . . . . . -1 -1 -1 . . . C32276 WUBlastX LTR_ERV1 9446 9607 31 - . . C32276 GLEAN mRNA 2612 10129 0.932261 - . ID=CGI_10000874; scaffold334 WUBlastX LTR_Gypsy 44357 44542 100 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LTR_Ngaro 181120 181392 81 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold324 WUBlastX DNA_TcMar-Tc1 254688 254909 38 + . . . . . -1 -1 -1 . . . scaffold314 WUBlastX LTR_Gypsy 80862 81575 27 + . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy 66845 67234 89 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1316 WUBlastX LTR_Gypsy 260011 260538 59 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold42226 WUBlastX LTR_Gypsy 129460 129735 52 + . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX DNA_IS4EU 329596 329772 82 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_IS4EU 554522 554635 21 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_IS4EU 296578 296982 63 + . . . . . -1 -1 -1 . . . scaffold40548 WUBlastX DNA_hAT-hATw 36155 36796 31 - . . . . . -1 -1 -1 . . . C27792 WUBlastX DNA_Harbinger 4220 4393 77 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX RC_Helitron 200434 200958 68 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_RTE-BovB 1023411 1023674 79 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Penelope 478753 478932 29 + . . . . . -1 -1 -1 . . . scaffold1728 WUBlastX DNA_TcMar-Marin 43727 43849 85 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_TcMar-Tc1 2020 2106 20 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX DNA_TcMar-Tc1 84326 84463 54 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_Ngaro 197390 197677 66 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LTR_Ngaro 128876 129043 92 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_MuDR 345712 345948 31 - . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LINE_Penelope 117636 117782 39 + . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_L1 143450 143617 60 - . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L1 95423 95491 51 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LINE_RTE-X 83457 84137 24 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-X 453340 453591 52 - . . scaffold203 GLEAN mRNA 431495 460852 0.461924 + . ID=CGI_10021073; C34634 WUBlastX LINE_RTE-X 2265 2492 55 - . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_Maverick 160429 160566 40 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LTR_Gypsy 37367 37636 20 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_PiggyBac 726768 726860 35 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold35732 WUBlastX LINE_RTE-X 2925 3137 63 - . . . . . -1 -1 -1 . . . scaffold41442 WUBlastX LINE_RTE-X 12554 12751 59 - . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX LINE_RTE-X 159703 159882 27 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 466182 466574 29 + . . scaffold433 GLEAN mRNA 456112 473771 0.317728 + . ID=CGI_10027074; scaffold43726 WUBlastX LINE_RTE-X 193127 193339 38 + . . scaffold43726 GLEAN mRNA 189584 195489 0.999572 - . ID=CGI_10012025; scaffold619 WUBlastX LINE_L1-Tx1 927669 927872 48 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_L1-Tx1 360520 360714 67 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Tc2 1790131 1790250 23 + . . . . . -1 -1 -1 . . . scaffold38306 WUBlastX LINE_L1 6312 6377 25 + . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold38306 WUBlastX LINE_L1 7154 7537 62 + . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold39858 WUBlastX LTR_Pao 72154 72552 94 - . . scaffold39858 GLEAN mRNA 65424 78749 0.99005 + . ID=CGI_10003660; scaffold412 WUBlastX LINE_L2 947 1300 107 + . . . . . -1 -1 -1 . . . scaffold35238 WUBlastX LINE_CR1 2662 2991 25 - . . . . . -1 -1 -1 . . . C25118 WUBlastX LINE_L2 51 164 33 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L2 28262 28414 20 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_L2 28396 28626 23 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold916 WUBlastX LINE_L2 77049 77252 38 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_CR1-L2 847815 848105 78 - . . scaffold1189 GLEAN mRNA 845721 854724 0.805708 + . ID=CGI_10023837; scaffold1673 WUBlastX LINE_CR1 306173 306304 62 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_L2 235428 235499 22 - . . scaffold950 GLEAN mRNA 224684 252187 0.638871 - . ID=CGI_10022925; scaffold39380 WUBlastX DNA_Crypton 58692 59036 64 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Ngaro 300005 300184 86 + . . scaffold204 GLEAN mRNA 270844 308042 0.270192 - . ID=CGI_10026102; scaffold43008 WUBlastX LTR_Gypsy 44491 44823 71 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_ERV-Foamy 362381 362452 22 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Gypsy 142800 142886 41 + . . scaffold453 GLEAN mRNA 138101 157244 0.160604 + . ID=CGI_10015041; scaffold41398 WUBlastX DNA_Harbinger 22138 22296 49 - . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX DNA_Harbinger 22361 22474 27 - . . . . . -1 -1 -1 . . . scaffold64 WUBlastX DNA_Harbinger 119817 120026 72 + . . scaffold64 GLEAN mRNA 118246 132595 0.997548 - . ID=CGI_10005753; scaffold1777 WUBlastX LTR_Gypsy 39128 39316 24 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 261167 261802 47 - . . scaffold347 GLEAN mRNA 231355 265361 0.350161 - . ID=CGI_10021787; scaffold78 WUBlastX LINE_Penelope 78529 79056 39 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_hAT-Tip100 894899 895183 86 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold32230 WUBlastX DNA_MuDR 1857 2267 81 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_TcMar-Tc2 603721 604074 83 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Marin 419485 419766 38 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_RTE-BovB 311817 312413 82 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-BovB 1260053 1260484 70 - . . scaffold86 GLEAN mRNA 1231261 1279248 0.605603 + . ID=CGI_10028197; scaffold1360 WUBlastX DNA_PiggyBac 669137 669343 45 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Gypsy 92491 92616 36 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 173170 173325 41 - . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold175 WUBlastX LINE_RTE-X 526566 526778 36 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 18587 18679 23 - . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LTR_DIRS 101937 102167 88 - . . . . . -1 -1 -1 . . . scaffold577 WUBlastX LTR_DIRS 114971 115249 80 + . . scaffold577 GLEAN mRNA 114977 115387 0.999451 + . ID=CGI_10009917; scaffold79 WUBlastX DNA_TcMar-Tc1 273844 274047 24 - . . . . . -1 -1 -1 . . . C26860 WUBlastX DNA_TcMar-Tc1 180 311 27 + . . C26860 GLEAN mRNA 25 285 0.999372 + . ID=CGI_10000331; scaffold39198 WUBlastX LINE_L1-Tx1 27686 27883 23 - . . . . . -1 -1 -1 . . . scaffold39198 WUBlastX LINE_L1-Tx1 34805 35002 23 + . . . . . -1 -1 -1 . . . scaffold35336 WUBlastX LINE_L1-Tx1 12782 12847 21 + . . . . . -1 -1 -1 . . . scaffold35712 WUBlastX LINE_Jockey 7765 7827 22 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold391 WUBlastX LINE_L1 6562 7029 87 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_hAT-Tip100 359234 359497 113 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold535 WUBlastX LTR_Gypsy 559381 559530 50 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold1600 WUBlastX LTR_DIRS 185382 185555 21 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 185382 185555 21 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold1256 WUBlastX LTR_Ngaro 90546 90797 68 + . . scaffold1256 GLEAN mRNA 90444 103764 0.997922 + . ID=CGI_10005430; scaffold1256 WUBlastX LTR_Ngaro 91579 91641 26 + . . scaffold1256 GLEAN mRNA 90444 103764 0.997922 + . ID=CGI_10005430; scaffold1723 WUBlastX LINE_R2-Hero 146022 146171 85 - . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX DNA_TcMar-Fot1 9511 10050 35 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX DNA_TcMar-Marin 269194 269268 31 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX DNA_TcMar-Tc1 141386 141532 42 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_I 562748 562891 29 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Penelope 996541 996672 54 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_L1 755034 755174 31 + . . . . . -1 -1 -1 . . . scaffold984 WUBlastX LINE_L1-Tx1 3335 3736 64 + . . scaffold984 GLEAN mRNA 2190 6762 0.999998 + . ID=CGI_10000576; scaffold676 WUBlastX LINE_RTE-X 576644 576913 28 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold1328 WUBlastX DNA_Maverick 26003 26233 96 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 27065 27370 52 + . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_Maverick 6230 6757 85 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_RTE-BovB 260725 261042 110 - . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX LTR_DIRS 17634 17918 82 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_Sola 450757 451200 46 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 434593 434883 49 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Tc1 250932 251288 74 - . . scaffold1213 GLEAN mRNA 226891 261241 0.989794 + . ID=CGI_10027441; scaffold1627 WUBlastX LTR_Pao 94606 94902 123 + . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_CR1-L2 138505 138945 59 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_L2 241075 241788 89 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LTR_Gypsy-Cigr 395671 395892 98 + . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX DNA_hAT-Tip100 146338 146703 75 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 607761 608063 46 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1-Tx1 128170 128364 40 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L1-Tx1 1041941 1042048 48 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold1588 WUBlastX LINE_L1 380475 381086 83 + . . . . . -1 -1 -1 . . . scaffold372 WUBlastX LINE_Penelope 239910 240182 76 - . . . . . -1 -1 -1 . . . scaffold38780 WUBlastX DNA_PiggyBac 6745 7221 63 - . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold42070 WUBlastX LINE_Proto2 114 749 60 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 322849 322944 44 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_RTE-X 133829 134017 30 - . . . . . -1 -1 -1 . . . scaffold43072 WUBlastX LINE_RTE-X 112752 113069 82 - . . scaffold43072 GLEAN mRNA 112346 129150 0.396359 - . ID=CGI_10008700; scaffold43522 WUBlastX LINE_L1 101393 102205 45 - . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold35926 WUBlastX DNA_Sola 1923 2240 108 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Tc1 877632 878396 75 - . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX RC_Helitron 15772 15909 35 + . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX RC_Helitron 16054 16500 20 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_L2 826746 827189 48 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_L2 566698 567048 88 + . . . . . -1 -1 -1 . . . scaffold1349 WUBlastX LINE_L2 101255 101725 74 + . . scaffold1349 GLEAN mRNA 98417 106130 0.988431 - . ID=CGI_10009938; scaffold42840 WUBlastX LINE_CR1 187971 188168 24 + . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold35884 WUBlastX LINE_L2 2193 2531 73 - . . . . . -1 -1 -1 . . . scaffold617 WUBlastX LTR_DIRS 62118 62441 74 - . . . . . -1 -1 -1 . . . scaffold617 WUBlastX LTR_DIRS 62621 62794 61 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Ngaro 342560 342952 88 + . . scaffold152 GLEAN mRNA 326766 349856 0.295405 + . ID=CGI_10014899; scaffold1066 WUBlastX LTR_Gypsy 264607 265308 60 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 247321 247500 80 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_Penelope 379595 379774 101 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold42 WUBlastX LINE_Penelope 540351 540467 31 + . . scaffold42 GLEAN mRNA 523128 541395 0.964037 - . ID=CGI_10018925; scaffold42 WUBlastX LINE_Penelope 540530 540874 20 + . . scaffold42 GLEAN mRNA 523128 541395 0.964037 - . ID=CGI_10018925; scaffold230 WUBlastX LTR_Gypsy 218641 219426 106 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold660 WUBlastX LINE_L1 129005 129106 70 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_RTE-X 720246 720518 115 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LINE_RTE-X 69765 69971 46 - . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_RTE-X 106971 107150 24 + . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold53 WUBlastX LINE_L1-Tx1 1086952 1087407 116 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Zator 220710 220871 73 + . . . . . -1 -1 -1 . . . scaffold39594 WUBlastX LINE_L2 68251 69186 24 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_CR1-L2 705191 705376 53 + . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_CR1 207939 209108 28 + . . scaffold655 GLEAN mRNA 206640 213790 0.998219 + . ID=CGI_10014952; scaffold32094 WUBlastX LTR_Ngaro 6365 6880 94 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LTR_DIRS 70386 70880 115 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_DIRS 110679 110984 54 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_DIRS 110992 111168 80 - . . . . . -1 -1 -1 . . . scaffold42060 WUBlastX LINE_L2 73301 73777 120 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_L2 412189 412671 101 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX DNA_IS4EU 219781 220131 28 - . . . . . -1 -1 -1 . . . scaffold917 WUBlastX DNA_IS4EU 148880 149065 98 + . . scaffold917 GLEAN mRNA 121193 151265 0.227919 + . ID=CGI_10011083; scaffold789 WUBlastX LTR_Gypsy 322330 322752 46 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold38458 WUBlastX DNA_Harbinger 52840 53298 107 + . . scaffold38458 GLEAN mRNA 38002 56000 0.84332 + . ID=CGI_10002784; scaffold288 WUBlastX DNA_Harbinger 207813 208184 107 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold481 WUBlastX DNA_Harbinger 1189142 1189555 86 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX DNA_Kolobok 9786 9926 82 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX DNA_TcMar-Tc1 152624 153367 65 + . . . . . -1 -1 -1 . . . C12718 WUBlastX LINE_Penelope 10 192 109 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_Penelope 148658 149038 97 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 334 621 36 - . . . . . -1 -1 -1 . . . scaffold39274 WUBlastX LINE_RTE-BovB 19475 19651 124 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_RTE-X 548884 549600 82 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-X 953511 953720 87 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 213051 213398 71 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-X 151786 152133 71 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 32961 33347 89 + . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_RTE-X 330377 330766 96 - . . scaffold109 GLEAN mRNA 303639 363474 0.446526 - . ID=CGI_10022113; scaffold42770 WUBlastX LINE_L1-Tx1 92035 92385 64 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX DNA_TcMar-Tc1 111223 111408 88 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_L1-Tx1 28860 29180 89 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_CR1 172890 173201 141 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_CR1 269024 269110 29 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L2 3323 4075 125 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_L2 268433 269179 122 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L2 9966 10172 40 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L2 10147 10434 45 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L2 908571 908756 59 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 149117 149344 21 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_IS4EU 182696 182779 33 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_IS4EU 183051 183236 100 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_Odin 87624 87956 24 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_ERV1 31940 32179 36 - . . . . . -1 -1 -1 . . . C26320 WUBlastX LTR_ERV1 412 651 36 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Kolobok 295668 295949 121 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_RTE-BovB 194428 194616 62 - . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LINE_RTE-X 186214 186438 130 - . . scaffold609 GLEAN mRNA 183215 213482 0.840088 + . ID=CGI_10010464; scaffold332 WUBlastX LINE_RTE-X 176382 176648 43 + . . . . . -1 -1 -1 . . . scaffold47 WUBlastX DNA_TcMar-Tc2 25956 26684 158 - . . scaffold47 GLEAN mRNA 20135 33676 0.999415 - . ID=CGI_10002504; scaffold416 WUBlastX DNA_TcMar-Tc1 348984 349172 66 + . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX LINE_CR1-L2 25740 26147 128 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Fot1 649661 649957 72 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold632 WUBlastX LINE_L1 270550 271341 109 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L1 513290 513862 56 + . . . . . -1 -1 -1 . . . scaffold35574 WUBlastX LINE_L1 2960 3094 75 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 603603 603722 30 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-BovB 176267 176368 58 - . . . . . -1 -1 -1 . . . scaffold1195 WUBlastX LINE_RTE-X 49365 49559 83 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1 516187 516762 23 - . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_CR1-L2 86027 86482 81 - . . scaffold41560 GLEAN mRNA 83554 88131 1 - . ID=CGI_10005282; scaffold298 WUBlastX LTR_Ngaro 299175 299453 123 + . . scaffold298 GLEAN mRNA 297759 312412 0.999402 - . ID=CGI_10018824; scaffold22 WUBlastX LTR_Ngaro 1834876 1835118 106 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Harbinger 396164 396421 87 - . . . . . -1 -1 -1 . . . scaffold42568 WUBlastX DNA_IS4EU 35044 35496 142 + . . scaffold42568 GLEAN mRNA 21645 48345 0.50892 + . ID=CGI_10007265; scaffold22 WUBlastX RC_Helitron 1825120 1826025 95 + . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX LINE_L1-Tx1 24460 24666 47 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1 470981 471250 29 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold257 WUBlastX LINE_RTE-X 318027 318239 34 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold113 WUBlastX LINE_RTE-X 593183 593461 27 - . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 30499 30669 55 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX DNA_TcMar-Tc1 242401 242640 71 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_TcMar-Tc1 2656 2931 95 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L1-Tx1 1086871 1087161 138 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 415781 416290 253 - . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_L1-Tx1 12147 13523 573 - . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_L1-Tx1 14059 14442 138 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Maverick 163873 164418 293 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Maverick 164832 164912 20 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 562019 562501 225 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 232325 233698 892 - . . . . . -1 -1 -1 . . . scaffold36736 WUBlastX LTR_DIRS 33885 34322 134 + . . . . . -1 -1 -1 . . . scaffold764 WUBlastX LINE_L2 21996 22331 105 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Ngaro 547038 547493 70 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold1149 WUBlastX LTR_DIRS? 584 640 46 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 653611 653865 46 - . . . . . -1 -1 -1 . . . scaffold36410 WUBlastX DNA_Harbinger 5617 5808 26 + . . scaffold36410 GLEAN mRNA 4689 21980 0.354487 - . ID=CGI_10001887; scaffold1722 WUBlastX DNA_Harbinger 226090 226224 45 - . . . . . -1 -1 -1 . . . scaffold510 WUBlastX DNA_hAT-hATw 275842 276486 92 - . . . . . -1 -1 -1 . . . C29052 WUBlastX DNA_Kolobok 211 450 86 - . . . . . -1 -1 -1 . . . C29052 WUBlastX DNA_Kolobok 1141 1353 68 - . . . . . -1 -1 -1 . . . C34436 WUBlastX DNA_NOF? 10223 10348 99 + . . . . . -1 -1 -1 . . . C34436 WUBlastX DNA_NOF? 10344 10535 94 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX DNA_PiggyBac 668698 668907 85 + . . . . . -1 -1 -1 . . . scaffold37426 WUBlastX LTR_DIRS 32413 32943 109 + . . . . . -1 -1 -1 . . . scaffold37426 WUBlastX LTR_DIRS 32918 33037 34 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_Sola 37698 37865 56 + . . . . . -1 -1 -1 . . . scaffold36 WUBlastX LTR_Gypsy 2870 3133 42 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold1734 WUBlastX LINE_L2 126159 127832 1004 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_DIRS 785109 786101 596 - . . . . . -1 -1 -1 . . . scaffold39960 WUBlastX LTR_Gypsy 22738 25086 717 - . . . . . -1 -1 -1 . . . scaffold31388 WUBlastX DNA_Zator 4844 5029 33 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold42790 WUBlastX LTR_Gypsy 159000 159452 288 + . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L2 44443 45132 123 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_CR1 158531 158797 44 + . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX DNA_TcMar-ISRm1 90958 91764 139 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 196159 196809 47 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 214644 215234 47 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_En-Spm 282937 283011 27 - . . scaffold1525 GLEAN mRNA 276942 293191 0.993853 - . ID=CGI_10013865; scaffold1634 WUBlastX LTR_Gypsy 51889 51987 20 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 44030 44311 96 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 44314 44577 113 + . . . . . -1 -1 -1 . . . scaffold1835 WUBlastX DNA_hAT-Blackja 379070 379402 90 - . . scaffold1835 GLEAN mRNA 376025 381999 0.999671 - . ID=CGI_10015194; scaffold1835 WUBlastX DNA_hAT-Blackja 379363 379521 41 - . . scaffold1835 GLEAN mRNA 376025 381999 0.999671 - . ID=CGI_10015194; scaffold40104 WUBlastX DNA_IS4EU 36123 36509 172 + . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold42592 WUBlastX DNA_IS4EU 144425 144772 135 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_NOF 392152 392511 119 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold39014 WUBlastX LINE_L1-Tx1 47582 47680 25 + . . . . . -1 -1 -1 . . . scaffold207 WUBlastX LINE_L1-Tx1 20315 20797 114 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 501483 501740 54 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_Pao 178555 178968 388 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Ngaro 305818 306087 161 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 132188 132382 160 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Ngaro 317475 319052 1078 + . . scaffold1301 GLEAN mRNA 311038 320027 0.984699 - . ID=CGI_10027714; scaffold733 WUBlastX LTR_Gypsy 39077 40333 1145 + . . scaffold733 GLEAN mRNA 37672 49158 0.939016 - . ID=CGI_10025863; scaffold1771 WUBlastX LTR_Gypsy 94102 94188 22 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold3 WUBlastX RC_Helitron 1298239 1299186 58 - . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_Gypsy-Cigr 12986 14131 787 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Gypsy 630403 631707 373 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 314264 317551 813 - . . scaffold631 GLEAN mRNA 311038 316999 0.99846 - . ID=CGI_10014187; scaffold630 WUBlastX LTR_Gypsy-Cigr 269546 269749 52 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Pao 1099 1668 57 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_CR1 176380 176727 161 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LINE_CR1 148648 148854 178 - . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_L2 39727 40188 133 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_DIRS 621525 621722 52 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_DIRS 621860 622729 43 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 988770 988898 26 + . . scaffold1532 GLEAN mRNA 980578 997386 0.999875 - . ID=CGI_10028278; scaffold1397 WUBlastX LTR_Gypsy 157501 158106 180 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_Gypsy 418759 418968 50 + . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_RTE-X 66258 66602 129 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Maverick 525078 525500 116 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-BovB 95595 95741 82 - . . . . . -1 -1 -1 . . . scaffold42784 WUBlastX LINE_RTE-BovB 65121 65411 50 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_L1-Tx1 77095 77175 34 + . . . . . -1 -1 -1 . . . scaffold35276 WUBlastX LINE_L1-Tx1 14080 16260 939 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 417159 417641 61 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Gypsy 74254 76578 1245 + . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LTR_Gypsy 757927 760008 1266 + . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Gypsy 107016 107237 154 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Gypsy 111211 111393 23 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Gypsy 113890 114270 312 + . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LINE_RTE-X 138318 140741 1061 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_L2 222850 223080 63 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold62 WUBlastX LINE_L2 184286 184729 104 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 589707 590147 151 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_L2 393639 393695 22 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_Harbinger 284779 285117 95 + . . scaffold867 GLEAN mRNA 272568 288334 0.996494 + . ID=CGI_10026216; scaffold1133 WUBlastX DNA_IS4EU 34968 35153 27 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_I 113969 114358 37 + . . . . . -1 -1 -1 . . . C33256 WUBlastX LTR_Ngaro 7306 7722 67 - . . . . . -1 -1 -1 . . . C33256 WUBlastX LTR_Ngaro 7761 8060 103 - . . . . . -1 -1 -1 . . . scaffold33806 WUBlastX LINE_RTE-X 1980 2405 152 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc1 223040 223327 97 - . . scaffold1024 GLEAN mRNA 191784 246938 0.99909 + . ID=CGI_10028528; C31396 WUBlastX LINE_L1-Tx1 1277 1819 134 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_CR1 301309 302973 1296 + . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 24618 26141 1326 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold149 WUBlastX LINE_L1-Tx1 231143 232114 639 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 232140 232790 246 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 232792 233385 346 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_L2 93565 93939 76 + . . . . . -1 -1 -1 . . . scaffold41664 WUBlastX LINE_L2 63199 63750 107 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 98125 98469 75 + . . . . . -1 -1 -1 . . . scaffold43396 WUBlastX LTR_Ngaro 235006 235404 60 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold1017 WUBlastX LTR_Gypsy 628852 629289 156 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1 925399 925809 66 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 356294 356539 63 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 357025 357072 29 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_RTE-X 131009 131158 86 + . . scaffold42402 GLEAN mRNA 124224 132825 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 131009 131158 86 + . . scaffold42402 GLEAN mRNA 127799 151962 1 + . ID=CGI_10006796; scaffold42402 WUBlastX LINE_RTE-X 131188 131244 28 + . . scaffold42402 GLEAN mRNA 124224 132825 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 131188 131244 28 + . . scaffold42402 GLEAN mRNA 127799 151962 1 + . ID=CGI_10006796; scaffold1749 WUBlastX DNA_Maverick 106322 106669 208 - . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold266 WUBlastX DNA_Maverick 331060 331638 169 - . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX LINE_L1-Tx1 369654 370151 91 - . . scaffold1316 GLEAN mRNA 367063 406080 0.346646 - . ID=CGI_10016312; scaffold1024 WUBlastX LINE_CR1-L2 20187 22037 963 - . . scaffold1024 GLEAN mRNA 216 21998 0.996423 - . ID=CGI_10028517; scaffold1350 WUBlastX LTR_DIRS 468048 468842 114 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold387 WUBlastX DNA_IS4EU 95699 96211 171 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1 157097 157525 93 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 435125 435781 84 - . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1 16042 16113 25 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold562 WUBlastX LTR_Gypsy-Cigr 203987 204373 61 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_En-Spm 75944 78220 1347 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 24514 25497 320 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 25470 27062 717 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 98933 99214 115 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 101812 102363 239 + . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy 39237 39869 181 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Gypsy 305419 306348 523 + . . . . . -1 -1 -1 . . . scaffold1592 WUBlastX LINE_RTE-BovB 118133 118399 191 + . . . . . -1 -1 -1 . . . scaffold1592 WUBlastX LINE_RTE-BovB 118375 119589 1026 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_En-Spm 191888 192022 23 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold351 WUBlastX LTR_Ngaro 223909 224091 53 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Gypsy 523584 524474 171 + . . . . . -1 -1 -1 . . . scaffold465 WUBlastX DNA_IS4EU 70173 70640 162 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LTR_Ngaro 139485 139979 187 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_TcMar-Tc2 4197 4400 124 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 477360 477623 44 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LINE_RTE-X 477637 477765 79 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold835 WUBlastX LTR_DIRS 41260 41577 98 + . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX DNA_Academ 40848 41030 43 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L2-Hydra 33069 34688 100 + . . . . . -1 -1 -1 . . . C30752 WUBlastX LINE_CR1 486 1241 156 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_CR1 355993 356220 161 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_hAT-Blackja 44388 44561 25 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_hAT-Blackja 44588 44857 58 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 84967 85842 52 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_RTE-X 415233 415826 164 + . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX LINE_RTE-X 150025 150393 175 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 98454 99650 97 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 97610 97750 42 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Ngaro 263814 264335 179 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_Gypsy 45520 47016 611 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_Gypsy 47439 49325 936 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy-Cigr 233010 235121 937 + . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LINE_RTE-X 8254 10602 1125 + . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX DNA_TcMar-Tc1 26372 26482 44 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_CR1-L2 747581 748102 51 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold630 WUBlastX LTR_Gypsy 269121 269567 194 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_DIRS 512018 512473 218 + . . . . . -1 -1 -1 . . . scaffold38952 WUBlastX LINE_Penelope 35197 35628 214 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1-Tx1 412293 412685 211 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold469 WUBlastX LTR_Pao 622545 622973 352 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold602 WUBlastX LTR_Gypsy 87514 87876 109 + . . . . . -1 -1 -1 . . . C31738 WUBlastX LINE_L1-Tx1 2163 4148 1019 + . . . . . -1 -1 -1 . . . C31738 WUBlastX LINE_L1-Tx1 4001 4846 142 + . . . . . -1 -1 -1 . . . C31738 WUBlastX LINE_L1-Tx1 4849 5109 21 + . . . . . -1 -1 -1 . . . C31738 WUBlastX LINE_L1-Tx1 5127 5897 165 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy 599397 599870 135 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Pao 202096 202206 87 + . . . . . -1 -1 -1 . . . C32106 WUBlastX LTR_Pao 8202 9143 239 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 191700 192062 52 - . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX LTR_Ngaro 20419 20958 111 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX DNA_IS4EU 134942 135121 134 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-X 442721 442933 38 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_L1-Tx1 28676 29185 134 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX DNA_TcMar-Tc1 257537 258004 103 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Gypsy 498219 498656 421 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Gypsy 498554 500800 1258 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LTR_Gypsy 44586 45614 141 + . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_RTE-BovB 35054 35368 82 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Ngaro 87190 87549 21 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LINE_L1-Tx1 1415 1759 102 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LINE_L1-Tx1 2180 2305 24 - . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX LINE_L1-Tx1 370211 370771 57 - . . scaffold1316 GLEAN mRNA 367063 406080 0.346646 - . ID=CGI_10016312; scaffold1665 WUBlastX LINE_Penelope 121627 121959 46 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_TcMar-Marin 308825 308866 23 + . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LINE_RTE-X 9042 9308 67 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-X 882347 883090 183 - . . scaffold22 GLEAN mRNA 852632 884943 0.996367 + . ID=CGI_10028880; scaffold1307 WUBlastX DNA_TcMar-Tc1 585974 586153 73 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_Gypsy-Troyk 116896 117954 384 - . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_L2 367720 368274 198 - . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_L2 86365 87258 110 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L2 1216305 1216877 209 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold37 WUBlastX LTR_DIRS 169370 169471 21 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Harbinger 55720 55803 48 + . . . . . -1 -1 -1 . . . C35168 WUBlastX LTR_Gypsy 20327 21208 566 + . . . . . -1 -1 -1 . . . C35168 WUBlastX LTR_Gypsy 21516 22862 1500 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Pao 110830 110940 50 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 104196 105284 549 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 105777 106226 143 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 106153 106500 238 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_hAT 193347 193778 99 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; scaffold773 WUBlastX DNA_hAT 193874 194173 109 + . . scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; scaffold43314 WUBlastX LINE_L2 84023 84397 29 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_Jockey 51899 52177 139 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-BovB 1164842 1165162 82 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX RC_Helitron 148841 152161 2148 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Pao 100430 100495 20 - . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy-Cigr 47380 47727 144 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_L2 588936 589466 229 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold1512 WUBlastX DNA_IS4EU 210374 211180 260 + . . . . . -1 -1 -1 . . . scaffold33360 WUBlastX LINE_L2 3 602 204 + . . . . . -1 -1 -1 . . . scaffold1564 WUBlastX LINE_CR1-L2 4659 4997 205 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_CR1-L2 291396 291734 205 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 76727 76948 82 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Tip100 737465 737701 77 + . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LTR_Gypsy 38352 39509 165 + . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LTR_Gypsy 40152 40280 29 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold79 WUBlastX LINE_RTE-BovB 491854 491988 24 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 492024 492143 57 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 492432 492815 148 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 219352 219582 53 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_RTE-X 374081 374497 202 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-X 937503 937757 26 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX DNA_TcMar-Tc1 217491 217688 90 + . . scaffold1521 GLEAN mRNA 212318 231130 0.482046 + . ID=CGI_10017939; scaffold337 WUBlastX LINE_L1-Tx1 1181048 1181833 115 + . . . . . -1 -1 -1 . . . C33378 WUBlastX LTR_Ngaro 7370 7819 273 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_DIRS 63200 63949 279 + . . scaffold41700 GLEAN mRNA 62822 64018 0.99493 + . ID=CGI_10005503; scaffold326 WUBlastX LTR_Gypsy 66514 66615 35 + . . scaffold326 GLEAN mRNA 66602 67012 0.649408 + . ID=CGI_10003297; scaffold38978 WUBlastX LTR_Gypsy 58360 58578 51 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 476057 476434 269 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX DNA_TcMar-Tc1 602813 603100 123 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_TcMar-Tc1 471292 472083 216 + . . . . . -1 -1 -1 . . . scaffold1124 WUBlastX LTR_Gypsy 7713 8405 648 - . . . . . -1 -1 -1 . . . scaffold1124 WUBlastX LTR_Gypsy 8393 10210 1242 - . . . . . -1 -1 -1 . . . scaffold1124 WUBlastX LTR_Gypsy 10216 10692 532 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 860531 860614 23 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1897 WUBlastX LINE_CR1-L2 445041 445304 172 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LINE_L2 750569 750799 89 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Pao 147099 147623 156 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Maverick 178373 178540 23 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_Maverick 319705 320217 227 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LTR_Ngaro 449642 450091 217 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LTR_Ngaro 105557 106006 217 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 21997 22620 162 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1705 WUBlastX DNA_Harbinger 119802 120410 231 - . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX DNA_Harbinger 94776 95354 253 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_Penelope 221371 222030 44 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 393460 393810 129 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 393819 394130 168 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_Sola 524001 524468 95 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_DIRS 43564 44250 153 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_DIRS 44184 44507 36 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX DNA_TcMar-Tc1 250453 250647 84 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_Kolobok 375289 375513 117 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 376261 376509 78 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 376842 377078 40 + . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold189 WUBlastX LINE_L1-Tx1 403747 403929 98 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_RTE-X 427627 428235 222 - . . scaffold408 GLEAN mRNA 422121 432580 0.840296 - . ID=CGI_10023238; scaffold408 WUBlastX LINE_RTE-X 428244 428354 74 - . . scaffold408 GLEAN mRNA 422121 432580 0.840296 - . ID=CGI_10023238; scaffold1083 WUBlastX LTR_Gypsy-Cigr 459333 460331 301 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 371520 371615 58 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 797363 797779 34 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L2 110440 110940 347 + . . scaffold3 GLEAN mRNA 82419 111292 0.739728 - . ID=CGI_10027273; scaffold630 WUBlastX LINE_L1 221725 222246 25 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_RTE-X 321804 322553 151 + . . . . . -1 -1 -1 . . . C28808 WUBlastX DNA_Sola 396 1091 328 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1-Tx1 296959 297198 61 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LINE_L2 750211 750573 238 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 737145 737537 103 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1 738167 738442 48 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_L1-Tx1 643878 644543 307 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 11879 12475 294 - . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 12501 12653 70 - . . . . . -1 -1 -1 . . . C22644 WUBlastX DNA_TcMar-Tc1 768 968 40 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 917242 918240 257 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_CR1-L2 89387 89728 100 + . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LTR_Gypsy 72470 73057 87 - . . . . . -1 -1 -1 . . . scaffold36748 WUBlastX DNA_Harbinger 11632 12489 277 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX RC_Helitron 37921 38223 189 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX RC_Helitron 38223 38399 91 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX RC_Helitron 38396 38824 45 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold43008 WUBlastX LINE_L1-Tx1 86135 86671 77 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold471 WUBlastX LINE_RTE-BovB 633671 633838 25 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-BovB 633826 634551 311 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_TcMar-Marin 552157 552513 168 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold241 WUBlastX LINE_RTE-X 448207 448323 64 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 275555 275818 50 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_L1 193954 194244 53 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 360364 360846 65 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 362428 362508 44 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 70743 71294 216 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 71770 72369 111 + . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX DNA_Academ 41124 41342 82 - . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX DNA_Academ 41476 41589 80 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 569410 569544 22 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold1512 WUBlastX LTR_Gypsy 116621 117196 404 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Gypsy 1040022 1040774 363 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 40402 40584 35 + . . . . . -1 -1 -1 . . . scaffold122 WUBlastX DNA_Kolobok 254659 254784 29 - . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX LINE_RTE-X 42494 43444 127 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Gypsy 990852 991427 201 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold332 WUBlastX LINE_L1-Tx1 148396 149361 203 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 138235 138921 62 + . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX LINE_CR1 91857 91979 27 + . . . . . -1 -1 -1 . . . scaffold463 WUBlastX LINE_L2 43225 43698 422 - . . scaffold463 GLEAN mRNA 29508 44578 1 - . ID=CGI_10004288; scaffold760 WUBlastX LTR_Gypsy 27785 28204 80 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Ngaro 140501 141364 364 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold1388 WUBlastX LTR_Ngaro 154610 155257 378 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Ngaro 340543 341367 305 + . . scaffold772 GLEAN mRNA 336765 344045 0.544674 + . ID=CGI_10016594; scaffold801 WUBlastX LTR_Ngaro 36863 37702 314 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_Penelope 153945 155018 321 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_RTE-X 149090 149950 272 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_Maverick 11120 11716 395 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 399275 400795 87 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy-Cigr 363100 363441 314 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy-Cigr 363440 364309 160 - . . . . . -1 -1 -1 . . . scaffold41762 WUBlastX LINE_L1-Tx1 86032 87189 227 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LINE_RTE-X 205868 207349 245 - . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_L2 81304 81825 100 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_L2 81905 82570 154 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold267 WUBlastX LINE_CR1 38178 38456 46 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-BovB 679023 679292 244 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 322674 323105 68 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Harbinger 735497 735610 122 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Harbinger 736039 736248 126 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX DNA_Maverick 349674 350402 213 - . . . . . -1 -1 -1 . . . scaffold1357 WUBlastX DNA_Maverick 79432 79560 51 - . . scaffold1357 GLEAN mRNA 78358 86116 0.978973 - . ID=CGI_10004038; scaffold39078 WUBlastX LINE_L1-Tx1 58928 59665 242 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX DNA_TcMar-Tc1 251639 252103 239 - . . scaffold544 GLEAN mRNA 248926 297755 0.519606 - . ID=CGI_10022553; scaffold1680 WUBlastX LTR_Gypsy 73485 74465 376 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold43182 WUBlastX LTR_DIRS 142898 143158 83 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_DIRS 144018 144089 28 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LTR_Gypsy 134232 134750 285 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold1849 WUBlastX LTR_Gypsy 134699 135022 177 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold100 WUBlastX DNA_TcMar-Marin 1060679 1060882 125 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX DNA_TcMar-Marin 46866 47246 150 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX DNA_TcMar-Marin 47469 48104 261 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_Zator 336018 336110 21 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_TcMar-Tc1 293114 293398 179 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_TcMar-Tc1 293442 293570 60 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_TcMar-Tc1 293576 294016 92 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 248785 250491 265 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold1500 WUBlastX LTR_Gypsy 185661 186290 506 - . . scaffold1500 GLEAN mRNA 171651 188068 0.692586 - . ID=CGI_10007900; scaffold534 WUBlastX LTR_Gypsy-Cigr 67870 68166 214 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold211 WUBlastX LINE_Penelope 658755 659045 60 - . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LTR_Gypsy 81171 81266 22 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LTR_DIRS 69906 70745 306 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX DNA_TcMar-Tc1 701726 701935 143 - . . scaffold70 GLEAN mRNA 689757 708725 0.811083 - . ID=CGI_10024788; scaffold70 WUBlastX DNA_TcMar-Tc1 701932 702462 223 - . . scaffold70 GLEAN mRNA 689757 708725 0.811083 - . ID=CGI_10024788; scaffold42704 WUBlastX DNA_TcMar-Tc1 86115 86810 327 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_L1-Tx1 149136 149354 21 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Ngaro 396444 396722 77 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 597096 597710 86 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 598155 598367 167 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_TcMar-Fot1 140897 141127 87 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_TcMar-Fot1 141269 141460 157 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_TcMar-Fot1 141575 141772 135 - . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_RTE-X 19059 19370 183 - . . . . . -1 -1 -1 . . . scaffold1508 WUBlastX DNA_TcMar-Tc1 143699 144730 417 + . . scaffold1508 GLEAN mRNA 116630 145116 0.499376 - . ID=CGI_10007806; scaffold481 WUBlastX LTR_Gypsy 962012 962143 39 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_Sola 96723 96896 35 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_Sola 97174 97494 156 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LINE_L2 12080 12406 40 - . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX LTR_Ngaro 73730 74116 229 - . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_Penelope 82056 82304 128 + . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_Penelope 82307 83068 412 + . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX DNA_IS4EU 176920 177084 52 + . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold847 WUBlastX DNA_TcMar-Tc1 631265 631975 218 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 1285198 1285656 110 + . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_Penelope 81790 82053 119 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 647479 647676 91 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_En-Spm 192791 193036 95 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_En-Spm 193072 193425 192 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_En-Spm 194531 194935 128 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-BovB 161857 162012 60 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_CR1 51643 52482 556 - . . . . . -1 -1 -1 . . . scaffold677 WUBlastX LTR_Pao 1 1299 475 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LINE_L1-Tx1 61235 61420 59 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 487691 489973 360 - . . . . . -1 -1 -1 . . . C33332 WUBlastX RC_Helitron 1958 2176 72 + . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 149253 149336 32 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LINE_L1-Tx1 540960 541319 221 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LINE_L1-Tx1 541306 541887 188 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LINE_L1-Tx1 542433 542987 70 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-BovB 111653 112312 274 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-BovB 112816 113091 153 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LTR_Gypsy 1231 1944 178 - . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_Maverick 1 1266 302 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX DNA_Kolobok-IS4 308959 309933 636 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LTR_Gypsy 67157 67561 61 - . . . . . -1 -1 -1 . . . C35606 WUBlastX LTR_Gypsy 6357 6902 175 - . . . . . -1 -1 -1 . . . C35606 WUBlastX LTR_Gypsy 6871 7476 539 - . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy 26046 26627 46 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Pao 75595 76389 49 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LINE_CR1 38438 39562 526 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LTR_DIRS 139017 139592 196 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold19 WUBlastX LTR_DIRS 139673 140113 140 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold1779 WUBlastX DNA_Harbinger 24099 24578 239 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LINE_Penelope 120361 121899 556 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 102335 103276 374 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 513745 513864 29 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 513852 514163 79 - . . . . . -1 -1 -1 . . . scaffold174 WUBlastX DNA_Sola 41751 42380 392 - . . . . . -1 -1 -1 . . . scaffold174 WUBlastX DNA_Sola 41061 41606 265 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LTR_Pao 372687 373214 555 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LTR_Pao 373244 373474 206 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LTR_Pao 373519 373599 53 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX DNA_Maverick 88383 89468 685 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_L2 167339 167839 315 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_RTE-X 64660 65211 181 + . . . . . -1 -1 -1 . . . C29134 WUBlastX LTR_Ngaro 5199 6182 667 + . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_RTE-X 136924 137526 68 - . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L1 72502 73113 66 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold973 WUBlastX LTR_Gypsy 343337 344896 76 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_RTE-X 185404 185448 34 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy 602559 602672 26 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 183163 183675 150 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 164191 165054 314 + . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1 165225 165788 122 - . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 86772 86966 24 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-X 423359 424009 195 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Maverick 352555 352824 79 - . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_RTE-X 326463 327233 180 + . . scaffold1579 GLEAN mRNA 320598 331843 0.999956 + . ID=CGI_10016869; scaffold192 WUBlastX DNA_Sola 24964 25320 156 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold613 WUBlastX LTR_Gypsy 15660 15839 187 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_DIRS 146292 148358 766 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 364257 366323 766 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 364526 365695 769 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX LINE_RTE-X 233353 234945 692 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 106630 108672 824 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1 136929 137204 37 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_L1 258279 258542 82 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold116 WUBlastX LINE_RTE-BovB 68107 68808 478 + . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LINE_RTE-BovB 69290 69625 248 + . . . . . -1 -1 -1 . . . scaffold43366 WUBlastX LTR_DIRS 81049 82728 853 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_Gypsy 45744 47075 876 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Harbinger 778327 778452 82 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Harbinger 778945 779046 50 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX DNA_IS4EU 796495 797931 841 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX DNA_MuDR 314452 316803 717 + . . . . . -1 -1 -1 . . . C30294 WUBlastX LTR_DIRS 2 736 478 + . . . . . -1 -1 -1 . . . C30294 WUBlastX LTR_DIRS 717 1520 417 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_CR1 39402 39707 61 - . . scaffold288 GLEAN mRNA 38387 49127 0.651135 + . ID=CGI_10020657; scaffold885 WUBlastX LTR_Copia 924818 925339 45 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 481657 481788 50 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Pao 485408 485539 50 - . . . . . -1 -1 -1 . . . scaffold36 WUBlastX LTR_Pao 7161 7292 50 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold43680 WUBlastX DNA_hAT-Tip100 174072 174287 61 - . . . . . -1 -1 -1 . . . C11037 WUBlastX DNA_hAT-Tag1 2 91 65 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L2 238724 238924 64 + . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_CR1-L2 405655 405918 35 - . . scaffold713 GLEAN mRNA 384658 415279 0.728047 - . ID=CGI_10017760; scaffold38848 WUBlastX LINE_L2 29057 29251 73 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX DNA_Crypton 56987 57613 40 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 113487 113693 60 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_En-Spm 81408 81545 59 - . . . . . -1 -1 -1 . . . scaffold1721 WUBlastX LINE_RTE-BovB 14682 14780 30 + . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy 63539 63637 23 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LTR_Gypsy 73875 74183 26 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_IS4EU 553221 553436 29 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_IS4EU 156684 156899 46 - . . scaffold513 GLEAN mRNA 149609 156857 0.819622 - . ID=CGI_10022138; scaffold576 WUBlastX DNA_Harbinger 133594 133854 52 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-Tip100 487161 487574 71 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold42530 WUBlastX DNA_hAT-Tip100 87230 87361 76 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_R2-Hero 932316 932432 25 - . . scaffold102 GLEAN mRNA 930119 940235 0.678096 - . ID=CGI_10028458; scaffold1104 WUBlastX LINE_R2-Hero 201498 202022 38 + . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX DNA_Kolobok 37824 37991 84 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LINE_Penelope 216789 217115 29 - . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold1757 WUBlastX LINE_Penelope 91403 91444 25 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_Penelope 551359 551742 46 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LINE_Penelope 75178 75546 24 + . . scaffold794 GLEAN mRNA 66441 78697 0.999826 + . ID=CGI_10017136; scaffold406 WUBlastX DNA_P 452860 452952 46 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_L1 271938 272060 32 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 849993 850058 30 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold332 WUBlastX DNA_TcMar-Marin 368188 368364 58 - . . scaffold332 GLEAN mRNA 366757 371898 1 - . ID=CGI_10020884; scaffold332 WUBlastX DNA_TcMar-Marin 368424 368492 24 - . . scaffold332 GLEAN mRNA 366757 371898 1 - . ID=CGI_10020884; scaffold37472 WUBlastX LINE_L1 30704 30961 51 + . . . . . -1 -1 -1 . . . scaffold42070 WUBlastX LINE_L1 67594 68067 28 - . . scaffold42070 GLEAN mRNA 63527 73059 0.466285 + . ID=CGI_10006078; scaffold1730 WUBlastX LINE_L1-Tx1 72044 72346 29 - . . . . . -1 -1 -1 . . . scaffold775 WUBlastX LINE_L1 131576 131860 70 + . . scaffold775 GLEAN mRNA 131840 132127 0.775544 + . ID=CGI_10006095; scaffold888 WUBlastX LINE_L1 101700 101957 41 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1 1341065 1341265 67 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1-Tx1 720085 720402 37 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1 594799 595017 65 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 303243 303452 66 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 789924 790427 28 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_CR1 747680 747811 78 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold269 WUBlastX LINE_RTE-X 455924 456049 81 - . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold1900 WUBlastX LINE_RTE-X 105988 106173 73 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-BovB 340571 340750 39 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-BovB 340890 341198 35 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Maverick 244513 244686 71 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LINE_RTE-BovB 495213 495653 47 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LINE_RTE-BovB 56843 56971 28 + . . scaffold705 GLEAN mRNA 54891 78972 0.408277 - . ID=CGI_10015497; scaffold290 WUBlastX LINE_RTE-X 57974 58186 52 + . . scaffold290 GLEAN mRNA 51430 74485 0.815504 + . ID=CGI_10018531; scaffold1228 WUBlastX DNA_TcMar-Marin 154314 154400 24 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_RTE-X 440107 440268 47 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 261825 262160 51 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX DNA_hAT-Tip100 523852 523983 50 - . . scaffold160 GLEAN mRNA 523738 543493 0.85871 - . ID=CGI_10020606; scaffold160 WUBlastX DNA_hAT-Tip100 524212 524298 24 - . . scaffold160 GLEAN mRNA 523738 543493 0.85871 - . ID=CGI_10020606; C26918 WUBlastX DNA_TcMar-Tc1 907 1104 28 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_L1-Tx1 144447 144830 29 - . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LINE_L1-Tx1 58008 58181 45 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L1-Tx1 554710 555099 55 + . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LTR_Gypsy 21597 22082 37 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 38176 38661 37 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 45204 45689 37 - . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_CR1 113322 113630 93 - . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L2 281907 282356 54 - . . scaffold1337 GLEAN mRNA 281481 282728 0.999981 - . ID=CGI_10012842; scaffold42264 WUBlastX LINE_L2 77495 77944 47 + . . scaffold42264 GLEAN mRNA 77336 78370 0.999917 + . ID=CGI_10006519; scaffold392 WUBlastX LINE_CR1-L2 789259 789372 26 + . . scaffold392 GLEAN mRNA 784797 793663 0.791625 - . ID=CGI_10024236; scaffold149 WUBlastX LINE_L2 233780 234265 66 - . . scaffold149 GLEAN mRNA 233711 233881 0.960172 - . ID=CGI_10025296; scaffold290 WUBlastX LINE_CR1-L2 84299 84700 23 - . . scaffold290 GLEAN mRNA 78200 85856 0.613006 - . ID=CGI_10018533; scaffold413 WUBlastX LINE_CR1 458682 458996 40 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_Rex-Babar 109406 110014 27 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Copia 195440 195562 23 + . . scaffold43608 GLEAN mRNA 194894 195750 0.999918 - . ID=CGI_10011400; scaffold43608 WUBlastX LTR_Copia 195440 195562 23 + . . scaffold43608 GLEAN mRNA 195518 195799 0.6496 + . ID=CGI_10011401; scaffold329 WUBlastX LTR_Pao 232172 232240 29 + . . . . . -1 -1 -1 . . . scaffold207 WUBlastX LTR_Gypsy 24680 25258 50 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 32406 33128 83 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_hAT-Ac 1538274 1538573 64 - . . scaffold102 GLEAN mRNA 1532525 1541174 0.3501 - . ID=CGI_10028505; scaffold664 WUBlastX LTR_Gypsy 548045 548482 56 + . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold1794 WUBlastX LTR_Gypsy-Cigr 477688 478173 67 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Gypsy 321355 321777 41 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L2 1205 1525 40 - . . . . . -1 -1 -1 . . . scaffold38458 WUBlastX LTR_Ngaro 5783 6151 40 + . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LTR_Ngaro 99641 99745 23 - . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LTR_Ngaro 99825 100073 33 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX RC_Helitron 135482 135763 86 - . . scaffold107 GLEAN mRNA 126838 146183 0.896861 - . ID=CGI_10025044; scaffold991 WUBlastX DNA_Kolobok-IS4 11644 11766 28 + . . . . . -1 -1 -1 . . . scaffold991 WUBlastX DNA_Kolobok-IS4 12549 12797 86 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Gypsy 582586 582825 109 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 213951 214247 85 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_L1 158483 159073 59 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold1262 WUBlastX LINE_L1 330773 331093 55 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LINE_L1 708443 708547 35 - . . . . . -1 -1 -1 . . . C32516 WUBlastX LINE_L1 3241 3486 69 - . . . . . -1 -1 -1 . . . scaffold315 WUBlastX DNA_Kolobok 41568 41855 30 - . . scaffold315 GLEAN mRNA 38585 42231 0.984467 + . ID=CGI_10020399; scaffold433 WUBlastX DNA_Kolobok-Hyd 1184155 1184229 26 + . . scaffold433 GLEAN mRNA 1183988 1188682 0.999621 + . ID=CGI_10027115; scaffold433 WUBlastX DNA_Kolobok-Hyd 1185063 1185257 26 + . . scaffold433 GLEAN mRNA 1183988 1188682 0.999621 + . ID=CGI_10027115; C16820 WUBlastX LINE_Penelope 39 350 63 - . . . . . -1 -1 -1 . . . scaffold752 WUBlastX LTR_ERV1 196783 197145 32 + . . scaffold752 GLEAN mRNA 196717 198051 0.998504 + . ID=CGI_10010042; scaffold983 WUBlastX LINE_RTE-X 170104 170649 69 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 59203 59496 67 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 850520 850873 44 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 285790 286041 89 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX DNA_Maverick 245479 245913 73 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_Maverick 326319 326438 40 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold43662 WUBlastX LINE_RTE-BovB 262604 262819 84 - . . . . . -1 -1 -1 . . . scaffold1207 WUBlastX LINE_RTE-BovB 3722 4027 27 - . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LTR_Lenti 20640 20792 27 - . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX LTR_Lenti 152580 152732 27 - . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX DNA_Sola 15782 16552 36 + . . . . . -1 -1 -1 . . . scaffold1506 WUBlastX LINE_R1 48504 48932 56 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LINE_L1-Tx1 18758 18883 29 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold1253 WUBlastX LINE_L1-Tx1 12312 12683 47 + . . . . . -1 -1 -1 . . . scaffold40164 WUBlastX LINE_L1-Tx1 8058 8108 34 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; C29680 WUBlastX LINE_L1-Tx1 4552 4833 47 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1-Tx1 24741 24974 75 - . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L1-Tx1 181688 181900 26 - . . scaffold348 GLEAN mRNA 160739 182763 0.583298 + . ID=CGI_10022972; C24650 WUBlastX LINE_L1-Tx1 5 166 55 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_ERV1 694942 694986 22 - . . . . . -1 -1 -1 . . . C33580 WUBlastX LTR_Pao 7428 7508 28 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_hAT 294043 294147 28 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX DNA_Merlin 518951 519352 52 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L2 1135042 1135689 52 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LTR_Ngaro 145018 145314 27 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Ngaro 126659 126955 27 + . . scaffold1149 GLEAN mRNA 123566 144809 0.531581 + . ID=CGI_10023452; scaffold37968 WUBlastX DNA_En-Spm 31536 31787 102 - . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_ERVK 38152 38442 58 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX DNA_TcMar-Marin 214510 214668 29 - . . scaffold457 GLEAN mRNA 213050 222173 0.400336 - . ID=CGI_10014534; scaffold53 WUBlastX LINE_I 1153635 1153727 24 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LINE_Penelope 120891 121487 40 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_Penelope 169208 169612 40 - . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_Maverick 6065 6751 69 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 77157 77285 91 - . . scaffold1480 GLEAN mRNA 77249 77533 0.999102 - . ID=CGI_10008636; scaffold43446 WUBlastX LINE_RTE-X 187899 188378 24 + . . scaffold43446 GLEAN mRNA 175111 204349 0.996568 - . ID=CGI_10010404; scaffold1743 WUBlastX LINE_RTE-X 112087 112257 80 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_RTE-X 304348 304536 65 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold370 WUBlastX LINE_RTE-X 731419 731643 98 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_RTE-X 21246 21527 63 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_RTE-X 720198 720527 90 - . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX LTR_Gypsy-Cigr 119644 119844 102 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold1000 WUBlastX LINE_CR1 147491 147811 50 + . . scaffold1000 GLEAN mRNA 146750 156759 0.989263 + . ID=CGI_10013075; scaffold1077 WUBlastX LINE_L2 144015 144413 66 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_CR1-L2 125087 125389 39 - . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_CR1-L2 138643 138945 78 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_CR1-L2 729334 729504 61 + . . . . . -1 -1 -1 . . . scaffold1723 WUBlastX LINE_CR1-L2 70803 70880 22 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_Merlin 394872 395147 96 + . . . . . -1 -1 -1 . . . scaffold1702 WUBlastX DNA_hAT-Ac 17669 17896 78 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 251982 252410 67 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Gypsy 1071479 1071661 33 - . . scaffold619 GLEAN mRNA 1070584 1074375 0.856709 - . ID=CGI_10025801; scaffold481 WUBlastX LTR_Gypsy 191018 191125 43 + . . . . . -1 -1 -1 . . . scaffold35406 WUBlastX LTR_Gypsy-Cigr 9065 9145 25 - . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold469 WUBlastX LTR_Ngaro 178268 178441 93 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LTR_Gypsy 80964 81602 112 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 223959 224141 36 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 290 556 96 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_Gypsy 944069 944134 24 + . . . . . -1 -1 -1 . . . scaffold1768 WUBlastX DNA_Harbinger 176 292 113 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Harbinger 1434873 1435139 64 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_Harbinger 10969 11262 86 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold40440 WUBlastX LINE_L1 37462 38199 48 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_MuDR 332526 333356 47 - . . scaffold1018 GLEAN mRNA 310333 332681 0.998378 - . ID=CGI_10019766; scaffold1123 WUBlastX LINE_Penelope 98967 99152 52 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_TcMar-Marin 229544 229723 54 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Ngaro 354863 355090 69 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold724 WUBlastX LINE_L1-Tx1 238284 238631 39 + . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LINE_L1 43098 43484 41 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 51309 51506 92 + . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LINE_RTE-X 92244 92348 24 + . . scaffold459 GLEAN mRNA 88021 99888 0.843454 + . ID=CGI_10018169; scaffold90 WUBlastX LINE_RTE-X 32329 32580 31 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX DNA_Maverick 95666 96001 49 - . . . . . -1 -1 -1 . . . scaffold41988 WUBlastX DNA_PiggyBac 96260 96442 94 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_RTE-X 646040 646228 63 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_TcMar-Tc1 210524 210898 78 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold175 WUBlastX LINE_L1-Tx1 242258 242935 56 + . . . . . -1 -1 -1 . . . scaffold42804 WUBlastX LINE_L1-Tx1 158850 159218 61 - . . scaffold42804 GLEAN mRNA 157232 161831 0.799839 - . ID=CGI_10007780; scaffold1615 WUBlastX LTR_Gypsy 4732 5028 124 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 645852 646400 83 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_IS4EU 540354 540479 37 + . . scaffold1101 GLEAN mRNA 537182 541543 0.997138 + . ID=CGI_10023032; C24900 WUBlastX DNA_IS4EU 677 847 112 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 96985 97215 58 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold610 WUBlastX DNA_IS4EU 105345 105563 86 - . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold152 WUBlastX RC_Helitron 354675 355124 123 + . . . . . -1 -1 -1 . . . scaffold36196 WUBlastX DNA_hAT-Tip100 5514 5771 93 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Harbinger 850982 851068 26 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold43426 WUBlastX LINE_L1-Tx1 143201 143269 33 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1 133054 133212 73 + . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1 15529 16011 43 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_MuDR 61522 62238 101 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_RTE-BovB 140185 140292 28 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 107759 108187 29 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-X 1174115 1174294 112 - . . scaffold419 GLEAN mRNA 1162167 1183881 0.999027 - . ID=CGI_10028390; scaffold419 WUBlastX LINE_RTE-X 1174115 1174294 112 - . . scaffold419 GLEAN mRNA 1166148 1182818 0.728723 + . ID=CGI_10028391; scaffold1796 WUBlastX LINE_RTE-X 70576 70770 112 + . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_TcMar-Pogo 215990 216403 102 + . . scaffold43576 GLEAN mRNA 197837 232524 1 - . ID=CGI_10011134; scaffold43964 WUBlastX LTR_DIRS 4237 4728 70 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79005 79217 42 - . . . . . -1 -1 -1 . . . scaffold50 WUBlastX DNA_TcMar-Tc1 143005 143247 65 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 24298 24873 84 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1-Tx1 258980 259096 56 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LTR_Gypsy-Cigr 150214 150435 96 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Gypsy-Cigr 582583 582954 86 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Gypsy-Cigr 582933 583292 42 - . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_CR1-L2 78395 78856 71 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_CR1 24099 24173 24 + . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX LINE_L2 48903 49376 95 - . . scaffold41546 GLEAN mRNA 38795 60206 0.986293 + . ID=CGI_10005268; scaffold40916 WUBlastX LINE_L2 38428 38901 95 + . . scaffold40916 GLEAN mRNA 5250 52256 0.246631 + . ID=CGI_10004570; scaffold39222 WUBlastX LINE_L2 1106 1579 95 - . . . . . -1 -1 -1 . . . scaffold38382 WUBlastX LINE_CR1 20198 20305 38 - . . . . . -1 -1 -1 . . . scaffold38382 WUBlastX LINE_CR1 20307 20384 47 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_CR1 128807 129019 105 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 740828 741010 49 + . . . . . -1 -1 -1 . . . scaffold40196 WUBlastX LTR_Gypsy 58623 59078 110 + . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX DNA_Harbinger 131160 131243 33 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX DNA_hAT-Tip100 231495 231710 116 + . . scaffold967 GLEAN mRNA 210935 232101 0.931586 + . ID=CGI_10015461; scaffold601 WUBlastX DNA_TcMar-Marin 1072652 1073017 107 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_Penelope 128298 128726 76 - . . scaffold354 GLEAN mRNA 123850 132843 0.496488 + . ID=CGI_10025699; scaffold1603 WUBlastX DNA_P 58274 58987 22 - . . scaffold1603 GLEAN mRNA 44108 68236 0.999997 - . ID=CGI_10012816; scaffold267 WUBlastX LINE_RTE-X 478793 479017 93 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_RTE-X 55686 55955 44 - . . . . . -1 -1 -1 . . . scaffold32618 WUBlastX LINE_RTE-X 1441 1689 20 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 236010 236096 63 + . . . . . -1 -1 -1 . . . scaffold1584 WUBlastX LINE_RTE-BovB 46608 47105 77 - . . . . . -1 -1 -1 . . . scaffold1452 WUBlastX DNA_TcMar-Tc1 95278 95673 82 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX DNA_hAT 393263 393394 26 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; scaffold35478 WUBlastX DNA_Crypton 9653 10273 56 + . . scaffold35478 GLEAN mRNA 1378 24674 0.687089 - . ID=CGI_10001535; scaffold35478 WUBlastX DNA_Crypton 10646 10987 69 + . . scaffold35478 GLEAN mRNA 1378 24674 0.687089 - . ID=CGI_10001535; scaffold630 WUBlastX LTR_DIRS 489993 490106 35 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_TcMar-Tc1 47787 47987 27 + . . scaffold1318 GLEAN mRNA 47679 59079 0.328272 + . ID=CGI_10008644; scaffold1227 WUBlastX DNA_IS4EU 188863 189375 128 + . . . . . -1 -1 -1 . . . C34010 WUBlastX LTR_Ngaro 9775 10278 90 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 485379 485759 95 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold563 WUBlastX DNA_TcMar-Marin 6361 6468 40 + . . . . . -1 -1 -1 . . . scaffold563 WUBlastX DNA_TcMar-Marin 7217 7369 82 + . . . . . -1 -1 -1 . . . scaffold38764 WUBlastX LINE_L1-Tx1 1102 1542 43 - . . . . . -1 -1 -1 . . . scaffold35110 WUBlastX LINE_L1 5948 6676 105 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1 335142 335819 75 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 571203 571610 23 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_PiggyBac 90420 90545 37 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 971394 971495 73 - . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold41834 WUBlastX LINE_RTE-X 116143 116319 116 + . . . . . -1 -1 -1 . . . scaffold1136 WUBlastX LINE_RTE-X 46024 46506 103 + . . scaffold1136 GLEAN mRNA 45613 63125 0.999895 + . ID=CGI_10003080; scaffold1402 WUBlastX LINE_RTE-X 157826 158209 62 + . . scaffold1402 GLEAN mRNA 154950 158880 0.996561 - . ID=CGI_10017580; scaffold728 WUBlastX DNA_En-Spm 438864 438953 26 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 369660 369944 78 - . . scaffold3 GLEAN mRNA 362573 374344 0.984893 - . ID=CGI_10027291; scaffold43278 WUBlastX DNA_hAT-Tip100 80852 81013 21 + . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LINE_L1-Tx1 43167 43484 77 + . . . . . -1 -1 -1 . . . scaffold1892 WUBlastX LINE_L1-Tx1 114460 114870 47 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 188721 188837 22 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Pao 200791 201822 23 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold247 WUBlastX LTR_DIRS 327904 328095 119 + . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold1705 WUBlastX LTR_Gypsy 122297 122500 24 - . . . . . -1 -1 -1 . . . scaffold42076 WUBlastX DNA_Harbinger 144395 144664 109 + . . scaffold42076 GLEAN mRNA 138926 144974 1 - . ID=CGI_10006087; scaffold874 WUBlastX DNA_Harbinger 35 304 109 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_Gypsy 10271 11053 72 - . . . . . -1 -1 -1 . . . C26108 WUBlastX LINE_L1 2726 2917 77 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LINE_L1 13109 13300 77 + . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1654 WUBlastX DNA_Kolobok 43553 43777 124 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Kolobok 329876 330100 124 + . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_Penelope 132062 132481 138 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_Penelope 39439 39978 69 + . . scaffold1149 GLEAN mRNA 36464 66919 0.42199 + . ID=CGI_10023447; scaffold867 WUBlastX LINE_RTE-X 397773 397925 51 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 134062 134331 114 + . . scaffold1665 GLEAN mRNA 129924 142467 0.651132 - . ID=CGI_10015200; scaffold983 WUBlastX LINE_RTE-X 207856 208125 114 - . . . . . -1 -1 -1 . . . scaffold42850 WUBlastX LINE_RTE-X 10831 11076 120 + . . scaffold42850 GLEAN mRNA 3662 13171 0.999996 + . ID=CGI_10007918; scaffold29 WUBlastX LINE_RTE-X 12754 13530 31 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX DNA_Maverick 62314 62691 92 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LINE_RTE-X 83493 83801 100 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Sola 3527 3628 22 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX DNA_Sola 15890 15991 22 + . . scaffold1869 GLEAN mRNA 8009 37015 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15890 15991 22 + . . scaffold1869 GLEAN mRNA 11164 16956 0.999984 + . ID=CGI_10009012; scaffold1057 WUBlastX LINE_L1-Tx1 2 277 112 + . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_CR1 38275 38751 102 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 364046 364504 92 - . . . . . -1 -1 -1 . . . scaffold42788 WUBlastX LINE_L2 26088 26396 110 - . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold36494 WUBlastX LINE_L2 6 275 100 - . . . . . -1 -1 -1 . . . C26370 WUBlastX LINE_CR1-L2 1830 2261 116 - . . . . . -1 -1 -1 . . . scaffold686 WUBlastX LINE_CR1-L2 2581 2892 129 - . . scaffold686 GLEAN mRNA 377 5602 0.998023 - . ID=CGI_10004460; scaffold576 WUBlastX LTR_Gypsy 146368 146664 71 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 166299 166466 51 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold38292 WUBlastX LTR_Gypsy 46449 47204 130 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold157 WUBlastX LTR_Ngaro 3436 3798 66 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Ngaro 602580 603263 20 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold504 WUBlastX LTR_Gypsy 6545 7147 125 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold1714 WUBlastX DNA_IS4EU 214489 214674 21 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 223944 224066 49 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 224609 224959 64 + . . . . . -1 -1 -1 . . . scaffold322 WUBlastX DNA_P 202091 202615 22 + . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 76366 76779 95 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1 843833 844054 32 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_L1 517662 517847 77 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold128 WUBlastX DNA_PiggyBac 231600 232097 53 + . . . . . -1 -1 -1 . . . C28702 WUBlastX DNA_TcMar-Tc1 1671 1865 78 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_RTE-X 85669 86301 63 + . . scaffold630 GLEAN mRNA 80549 90707 0.970045 - . ID=CGI_10018325; scaffold1732 WUBlastX LINE_RTE-X 41533 41724 61 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX DNA_Sola 438449 438688 34 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 1189817 1190083 72 + . . . . . -1 -1 -1 . . . scaffold41766 WUBlastX LINE_L1-Tx1 93929 94138 85 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1-Tx1 145321 145485 83 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_L2 554779 554880 21 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_L1 151530 152063 93 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold368 WUBlastX LTR_Pao 424651 424932 56 - . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LTR_DIRS 35355 35525 27 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX DNA_hAT 40778 40963 86 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-hATx 789082 789216 59 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 497546 497947 140 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_Kolobok-Hyd 33794 34570 53 - . . scaffold43008 GLEAN mRNA 18841 33811 0.999674 - . ID=CGI_10008458; scaffold99 WUBlastX LINE_I-Nimb 436657 436881 28 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 328711 328923 67 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX DNA_PiggyBac 312286 312924 154 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold546 WUBlastX LINE_RTE-X 36487 36726 107 - . . scaffold546 GLEAN mRNA 24963 48088 0.999351 + . ID=CGI_10020990; scaffold1021 WUBlastX LTR_DIRS 103677 103769 26 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 104739 104852 36 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 104843 105007 46 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold481 WUBlastX LTR_Gypsy 1226105 1227499 798 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1154 WUBlastX LTR_DIRS 634460 635167 347 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 634460 635167 347 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 635166 635705 119 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 635166 635705 119 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 635716 636096 226 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 635716 636096 226 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 636529 637512 160 - . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 636529 637512 160 - . . scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold101 WUBlastX LINE_CR1-L2 631358 631438 23 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L2 354837 354890 25 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 21948 22829 74 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Gypsy 989654 989707 20 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold247 WUBlastX DNA_Harbinger 493214 493369 47 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX DNA_Harbinger 4255 4461 171 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_Harbinger 616946 617347 62 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold658 WUBlastX DNA_MuDR 428553 428810 88 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_MuDR 429032 429280 48 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX DNA_TcMar-Tc1 181142 181432 59 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Maverick 233347 233745 54 + . . . . . -1 -1 -1 . . . scaffold42556 WUBlastX LINE_RTE-X 30593 31231 96 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_PiggyBac 155027 155320 95 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 105776 106381 496 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Gypsy 252995 253981 83 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_DIRS 87367 88101 391 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LTR_Gypsy 82292 82441 26 + . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LTR_Gypsy 83105 86161 1011 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy-Cigr 352706 353035 234 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 243809 244597 257 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_hAT 1355782 1355901 56 + . . . . . -1 -1 -1 . . . scaffold41480 WUBlastX LINE_L2 115016 116095 111 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 100062 100529 62 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 140016 140459 146 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold712 WUBlastX DNA_IS4EU 231506 232369 100 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LINE_L1-Tx1 17853 18413 95 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_MuDR 589474 589635 24 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold301 WUBlastX LINE_Penelope 627143 627583 115 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LINE_Penelope 121789 122058 22 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_IS4EU 303213 303476 72 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_IS4EU 303630 303701 42 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_IS4EU 304237 304341 50 - . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_L1-Tx1 223488 223904 126 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Maverick 644580 645140 164 + . . . . . -1 -1 -1 . . . scaffold28372 WUBlastX LINE_RTE-X 3953 4426 113 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 794886 795311 87 - . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_L1-Tx1 163057 163476 128 + . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX LINE_L1-Tx1 26 526 105 - . . . . . -1 -1 -1 . . . scaffold36758 WUBlastX LINE_L1-Tx1 2 1576 1029 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_L1-Tx1 223684 225504 521 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_L1-Tx1 225503 225997 368 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 314390 315940 702 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 316005 316394 40 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 316309 317133 328 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_TcMar-Tc1 616329 616469 53 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 222397 222723 20 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LTR_Gypsy 226294 226620 20 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LTR_Gypsy 226977 227303 20 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold1878 WUBlastX LTR_Gypsy 120500 121135 175 + . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LTR_Gypsy 26901 27536 175 - . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LTR_Gypsy 285091 285726 175 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX DNA_hAT-Tip100 394565 395242 175 + . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_Harbinger 9744 9863 47 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1 44447 44674 21 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-X 777230 777769 152 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LINE_RTE-X 204431 204700 169 + . . scaffold396 GLEAN mRNA 196799 208805 0.948886 - . ID=CGI_10018103; scaffold1599 WUBlastX LINE_L1 596919 597092 28 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_TcMar-Tigge 410077 410250 50 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX DNA_TcMar-Pogo 739030 739380 105 + . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold426 WUBlastX LINE_L1-Tx1 94189 94623 30 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy 95273 95989 46 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold404 WUBlastX LTR_Gypsy 25463 26062 421 - . . . . . -1 -1 -1 . . . scaffold273 WUBlastX LINE_RTE-X 95784 96914 525 + . . . . . -1 -1 -1 . . . scaffold273 WUBlastX LINE_RTE-X 96920 98101 602 + . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX LTR_Gypsy 32500 32892 283 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_Pao 331241 331549 181 - . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX LINE_CR1 101034 101189 85 - . . . . . -1 -1 -1 . . . scaffold40076 WUBlastX LTR_Gypsy 62805 63179 133 + . . scaffold40076 GLEAN mRNA 50026 69256 0.72657 + . ID=CGI_10003787; scaffold1705 WUBlastX LTR_Gypsy 94904 95674 171 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold1525 WUBlastX LTR_Ngaro 354539 355093 30 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold686 WUBlastX LTR_Ngaro 54249 54542 60 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_DIRS 105428 105565 21 - . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy 117865 118113 45 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Harbinger 127096 127392 46 - . . . . . -1 -1 -1 . . . scaffold1639 WUBlastX DNA_Harbinger 34573 35022 60 + . . scaffold1639 GLEAN mRNA 27466 42582 0.863535 + . ID=CGI_10005437; scaffold1715 WUBlastX LINE_Penelope 328146 328367 33 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1854 WUBlastX LINE_RTE-X 4803 5018 68 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 411145 411480 58 + . . . . . -1 -1 -1 . . . scaffold37032 WUBlastX LINE_L1-Tx1 1000 1116 56 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 146121 146336 125 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 146332 146673 256 - . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LTR_DIRS 60754 61776 323 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 354928 355098 51 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L2 166239 166301 20 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L2 166310 166909 104 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LINE_Penelope 221494 221889 168 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_PiggyBac 251429 251776 183 - . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold1680 WUBlastX LINE_RTE-X 1947 2177 114 + . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX LINE_RTE-X 186708 187181 125 - . . scaffold43574 GLEAN mRNA 179931 197375 0.814122 + . ID=CGI_10010880; scaffold288 WUBlastX LINE_RTE-X 394065 394787 133 - . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LINE_RTE-X 4779 5072 37 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy-Cigr 307078 307902 117 + . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX RC_Helitron 48139 50664 1441 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LTR_Gypsy 218892 219107 159 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LTR_Gypsy 219088 219723 324 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LTR_Gypsy 219794 220198 142 + . . . . . -1 -1 -1 . . . scaffold161 WUBlastX LTR_DIRS 110495 112582 1405 + . . scaffold161 GLEAN mRNA 106688 117037 0.832376 + . ID=CGI_10008589; scaffold1777 WUBlastX LINE_CR1-L2 53004 53042 23 - . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LINE_L2 87297 87794 58 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LTR_DIRS 107607 107816 34 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 10021 10290 64 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Harbinger 126383 127081 171 - . . . . . -1 -1 -1 . . . scaffold1549 WUBlastX LINE_L1-Tx1 7825 8334 96 + . . scaffold1549 GLEAN mRNA 4210 11718 0.999526 - . ID=CGI_10002845; scaffold601 WUBlastX LINE_RTE-X 834723 835211 53 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX DNA_PiggyBac 311545 311724 32 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold1221 WUBlastX LINE_L1-Tx1 525965 526258 83 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold1647 WUBlastX LTR_ERV1 6488 7603 163 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_CR1-L2 546485 547120 67 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LTR_Gypsy-Cigr 437094 437669 195 + . . scaffold1857 GLEAN mRNA 436788 451915 0.375837 + . ID=CGI_10020210; scaffold226 WUBlastX LTR_DIRS 463022 464128 58 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold1512 WUBlastX LTR_Ngaro 4100 4408 85 + . . . . . -1 -1 -1 . . . scaffold1290 WUBlastX LTR_Gypsy-Cigr 56475 57221 193 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy-Cigr 306394 307140 188 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1 181857 182366 196 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX DNA_Maverick 166069 166365 163 - . . . . . -1 -1 -1 . . . scaffold441 WUBlastX LINE_RTE-X 78040 78609 149 - . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LINE_L1-Tx1 613 1332 185 + . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX DNA_TcMar-Tc1 145916 146071 80 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 367171 367995 245 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 369416 370324 575 + . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LINE_L1-Tx1 127740 129590 725 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LINE_L1-Tx1 129389 130192 309 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LINE_L1-Tx1 130204 130458 122 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1133710 1133892 58 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX LTR_Ngaro 1133882 1134196 66 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold43200 WUBlastX LINE_RTE-X 144906 145499 139 - . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-X 12069 12344 31 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1-Tx1 43222 43578 112 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 810807 810992 89 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1-Tx1 699711 699977 54 - . . . . . -1 -1 -1 . . . scaffold98 WUBlastX LTR_Gypsy-Cigr 310258 311238 716 - . . . . . -1 -1 -1 . . . scaffold677 WUBlastX LTR_Pao 202 1884 115 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Tc1 223479 223589 46 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1-L2 193873 194175 66 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_CR1 393729 393785 22 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_CR1 574976 575272 146 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy 16668 17201 161 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Kolobok 284594 284701 36 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX DNA_Kolobok 286218 286436 90 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold960 WUBlastX LINE_CR1 324329 324391 24 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_RTE-X 395548 396399 141 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_L2 267877 271101 1442 + . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 51235 55605 1707 + . . . . . -1 -1 -1 . . . scaffold41162 WUBlastX LTR_Gypsy 88562 89326 185 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold1066 WUBlastX DNA_Harbinger 251243 251506 201 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_IS4EU 202184 202417 62 + . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX DNA_Kolobok 114713 114868 51 - . . scaffold43272 GLEAN mRNA 114590 115074 1 - . ID=CGI_10009668; scaffold43272 WUBlastX DNA_Kolobok 115271 115468 78 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX DNA_Kolobok 115647 115781 81 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold22 WUBlastX DNA_NOF 1316464 1316772 137 + . . scaffold22 GLEAN mRNA 1296873 1324907 0.541396 + . ID=CGI_10028906; scaffold22 WUBlastX DNA_NOF 1317043 1317144 58 + . . scaffold22 GLEAN mRNA 1296873 1324907 0.541396 + . ID=CGI_10028906; scaffold22 WUBlastX DNA_NOF 1317732 1317866 21 + . . scaffold22 GLEAN mRNA 1296873 1324907 0.541396 + . ID=CGI_10028906; scaffold1619 WUBlastX LINE_L1-Tx1 164102 164977 99 - . . . . . -1 -1 -1 . . . scaffold32550 WUBlastX LINE_RTE-X 6450 6989 117 - . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_RTE-X 3050 3241 45 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 1052956 1053261 115 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold975 WUBlastX LINE_RTE-BovB 130246 130725 165 + . . scaffold975 GLEAN mRNA 123992 132770 1 - . ID=CGI_10013325; scaffold145 WUBlastX LTR_Gypsy 268162 268716 248 + . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX DNA_TcMar-Tc1 80066 80224 93 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 235488 236339 620 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX RC_Helitron 144355 144714 135 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LTR_Gypsy 136316 137521 825 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Pao 664352 664534 29 - . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Pao 31373 31624 119 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_L2 340752 340949 84 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1-Tx1 1184612 1185925 133 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1 160322 160960 46 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_RTE-X 582 1757 176 - . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Gypsy-Troyk 34852 37098 1934 + . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_L1-Tx1 10633 11376 93 + . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX LINE_RTE-BovB 82157 82549 243 - . . scaffold43406 GLEAN mRNA 81497 87547 0.998098 + . ID=CGI_10010210; scaffold1493 WUBlastX LTR_Ngaro 113852 114103 75 + . . . . . -1 -1 -1 . . . scaffold37664 WUBlastX DNA_IS4EU 45984 46541 234 + . . . . . -1 -1 -1 . . . scaffold38908 WUBlastX DNA_IS4EU 37120 37629 132 + . . . . . -1 -1 -1 . . . scaffold38908 WUBlastX DNA_IS4EU 37619 37810 121 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy 183866 183943 22 + . . scaffold1155 GLEAN mRNA 180232 184015 0.838121 + . ID=CGI_10007798; scaffold39986 WUBlastX LINE_RTE-X 63166 63714 168 - . . . . . -1 -1 -1 . . . scaffold39986 WUBlastX LINE_RTE-X 63840 63968 49 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 247207 247746 80 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold118 WUBlastX LINE_L2 74209 77424 1801 + . . scaffold118 GLEAN mRNA 64475 78115 0.835706 + . ID=CGI_10004583; scaffold40948 WUBlastX LTR_Pao 104840 105640 698 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 52936 55614 1924 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1046085 1046471 113 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Ngaro 466927 467388 185 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LTR_DIRS 520487 521269 238 - . . . . . -1 -1 -1 . . . scaffold959 WUBlastX LTR_DIRS 637 1419 238 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX DNA_Crypton 107436 108287 188 + . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold531 WUBlastX DNA_Harbinger 359209 359337 34 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX DNA_Harbinger 119703 120422 213 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 120815 121723 21 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX RC_Helitron 107354 107638 97 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX RC_Helitron 171699 173051 232 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX DNA_TcMar-Tc1 137623 138342 169 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX DNA_TcMar-Tc1 143541 144581 202 + . . scaffold63 GLEAN mRNA 141574 168555 0.999839 + . ID=CGI_10017272; scaffold1123 WUBlastX LTR_Gypsy 137334 140468 1917 + . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LTR_Gypsy 49162 49224 22 + . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX RC_Helitron 143158 143928 57 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_IS4EU 120583 120732 74 + . . . . . -1 -1 -1 . . . scaffold450 WUBlastX LINE_L1 125857 125958 30 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_Penelope 658836 659096 44 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-BovB 463219 463323 97 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-BovB 463320 463547 237 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 84278 84496 46 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_hAT-Ac 88613 90046 220 + . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 58165 58545 189 + . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 59278 59340 45 + . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 59340 59438 52 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 88948 89067 36 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 639358 640545 257 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold1322 WUBlastX DNA_TcMar-Tc1 359149 359505 131 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_TcMar-Tc1 359508 359624 81 + . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LTR_Gypsy 69849 69989 26 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_IS4EU 68693 69043 27 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_L1 225936 226355 84 + . . . . . -1 -1 -1 . . . scaffold37500 WUBlastX LINE_RTE-X 26760 26795 22 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold721 WUBlastX LTR_DIRS? 43696 44181 198 + . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX DNA_Kolobok-IS4 40432 41505 124 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 100436 100771 98 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 117279 118121 170 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Pao 291055 293097 346 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Pao 294066 294995 588 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1 104948 105058 23 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L2 488456 488923 76 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold446 WUBlastX LTR_Gypsy 164374 165135 180 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1 736998 737795 81 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 1082330 1083010 79 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold36794 WUBlastX LINE_L1-Tx1 13976 14542 133 + . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX LINE_L1-Tx1 14869 15711 44 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-BovB 904864 905688 186 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-BovB 905892 905987 43 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 707145 707546 141 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 707537 707932 59 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_L1-Tx1 288683 288748 25 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 14266 14844 393 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Ngaro 311219 312157 254 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_I 450477 450569 24 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX DNA_hAT-hATw 259152 260114 127 + . . scaffold1863 GLEAN mRNA 253566 292141 0.240564 - . ID=CGI_10016692; scaffold32 WUBlastX LINE_RTE-BovB 133615 133845 52 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1-Tx1 776915 777757 86 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 73190 74047 88 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_Ngaro 196836 197189 28 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_L1-Tx1 151758 152042 183 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold4 WUBlastX LINE_L1 474620 474676 20 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold337 WUBlastX DNA_Maverick 204937 205611 233 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_RTE-X 39455 40327 235 - . . scaffold1704 GLEAN mRNA 35457 41695 0.675217 - . ID=CGI_10010162; scaffold1846 WUBlastX LTR_DIRS 41048 41527 243 - . . . . . -1 -1 -1 . . . scaffold1846 WUBlastX LTR_DIRS 41547 41678 34 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Pao 1307864 1308670 283 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 41130 41951 268 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX DNA_Kolobok 245003 245308 144 + . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold117 WUBlastX DNA_Kolobok 246458 246673 62 + . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold117 WUBlastX DNA_Kolobok 246977 247213 72 + . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold36034 WUBlastX LINE_Penelope 8776 9147 44 - . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LINE_Penelope 9129 9404 159 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_RTE-X 408515 410203 160 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX DNA_TcMar-Tc1 152570 153130 153 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Ngaro 312624 312677 47 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX LTR_Ngaro 20084 20539 221 + . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX LTR_Ngaro 20544 20636 35 + . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX LTR_Ngaro 20641 20817 94 + . . . . . -1 -1 -1 . . . scaffold932 WUBlastX LTR_DIRS? 38214 38513 70 - . . . . . -1 -1 -1 . . . scaffold1181 WUBlastX LTR_Ngaro 37674 38660 244 + . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LTR_Gypsy 120513 120749 77 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 120789 121157 192 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold1103 WUBlastX DNA_MuDR 44663 45691 299 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LINE_RTE-X 279235 280272 218 - . . . . . -1 -1 -1 . . . C25496 WUBlastX LINE_RTE-X 2093 3190 228 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Maverick 159164 159307 115 + . . scaffold317 GLEAN mRNA 153090 159310 0.520587 + . ID=CGI_10019347; scaffold448 WUBlastX DNA_TcMar-Tc1 528208 528612 247 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_TcMar-Tc1 528633 528869 92 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Gypsy 111376 112152 173 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LTR_Ngaro 180739 180897 33 + . . . . . -1 -1 -1 . . . scaffold35070 WUBlastX DNA_PiggyBac 11782 11946 84 + . . . . . -1 -1 -1 . . . scaffold35070 WUBlastX DNA_PiggyBac 12241 12660 134 + . . . . . -1 -1 -1 . . . scaffold35070 WUBlastX DNA_PiggyBac 12626 12703 23 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 598221 598400 77 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 935792 935938 20 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_L1-Tx1 191071 191376 72 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold443 WUBlastX LINE_RTE-X 270974 271105 33 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Pao 743071 743190 62 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Pao 743521 743700 135 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LTR_Pao 485398 487125 348 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1 170705 171022 39 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 37784 38728 27 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 361156 361332 55 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L2 104409 105521 163 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_Penelope 561518 563374 228 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 515348 515986 203 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Sola 784560 784889 175 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Ngaro 40521 40853 149 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Ngaro 104746 105297 328 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX DNA_Harbinger 7880 8131 231 - . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 7880 8131 231 - . . scaffold38978 GLEAN mRNA 7539 8521 0.655792 - . ID=CGI_10003127; scaffold97 WUBlastX DNA_P 117820 117966 45 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_P 115678 115893 77 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 1315852 1316739 69 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold1670 WUBlastX LINE_CR1 399064 399243 84 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold980 WUBlastX LTR_DIRS 575102 576025 360 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 201522 201599 22 - . . . . . -1 -1 -1 . . . C21496 WUBlastX DNA_IS 2 280 427 + . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LTR_Gypsy 39953 40141 44 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 40984 41181 107 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold323 WUBlastX LINE_L1-Tx1 136348 136569 40 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L1-Tx1 136881 138404 128 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L1-Tx1 51760 52389 25 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold39352 WUBlastX LINE_L2-Hydra 59950 60273 65 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 89363 89707 239 - . . . . . -1 -1 -1 . . . scaffold40270 WUBlastX LTR_Ngaro 7036 7317 116 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 8915 9226 87 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 9289 9492 122 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 9557 9700 69 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 9682 10209 25 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 10222 10554 89 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 128377 128631 22 - . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_CR1 266436 267059 44 - . . scaffold400 GLEAN mRNA 262709 267661 0.544852 - . ID=CGI_10011440; scaffold40366 WUBlastX LTR_Gypsy 87037 87522 59 - . . . . . -1 -1 -1 . . . scaffold38448 WUBlastX RC_Helitron 46059 48305 74 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-BovB 309035 309424 120 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-BovB 309958 310248 78 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-BovB 310846 310977 30 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 68320 69168 365 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 421706 422011 90 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold525 WUBlastX LINE_Proto2 194909 196711 185 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_L1 162770 163987 274 - . . scaffold911 GLEAN mRNA 159613 170351 0.499121 + . ID=CGI_10012141; scaffold315 WUBlastX DNA_hAT 395076 395864 427 - . . scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; scaffold169 WUBlastX LTR_Gypsy 709290 709406 30 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1-Tx1 249409 250512 266 + . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_Ngaro 196886 197155 81 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 197175 197252 52 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; C32578 WUBlastX LINE_L1-Tx1 11369 11614 31 + . . . . . -1 -1 -1 . . . C28958 WUBlastX LTR_Gypsy 3841 4362 99 + . . . . . -1 -1 -1 . . . scaffold340 WUBlastX DNA_IS4EU 217902 218030 109 + . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LINE_L1 14978 15694 202 - . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LINE_L1 16493 17860 113 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 399674 400804 159 - . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX LTR_Ngaro 1750 1860 54 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 577004 577849 205 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1791 WUBlastX LTR_Ngaro 99465 100451 362 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; scaffold1186 WUBlastX LTR_Gypsy 133459 133986 114 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 547726 548418 216 - . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX DNA_TcMar-Marin 42611 42997 239 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Maverick 50796 50885 29 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold654 WUBlastX DNA_Maverick 54346 54441 34 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_RTE-BovB 482653 482832 25 + . . . . . -1 -1 -1 . . . scaffold13 WUBlastX DNA_IS4EU 239554 240447 433 + . . . . . -1 -1 -1 . . . scaffold13 WUBlastX DNA_IS4EU 240429 240551 38 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_Ngaro 708966 709076 32 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_CR1 47528 48124 258 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 229562 229876 136 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 132086 132364 89 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Gypsy-Cigr 2779 3516 415 - . . . . . -1 -1 -1 . . . scaffold41346 WUBlastX DNA_TcMar-Marin 18260 18784 320 - . . scaffold41346 GLEAN mRNA 15464 31699 0.862252 + . ID=CGI_10004998; scaffold101 WUBlastX LINE_L1-Tx1 559255 559668 53 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 397927 398334 157 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold31880 WUBlastX LINE_RTE-X 6326 6592 59 - . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_Gypsy 14576 14737 27 - . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LTR_DIRS 61087 61773 368 + . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LINE_L2 244285 245301 66 - . . scaffold432 GLEAN mRNA 235322 257919 0.999925 + . ID=CGI_10023091; scaffold99 WUBlastX RC_Helitron 317080 317895 54 - . . . . . -1 -1 -1 . . . scaffold1103 WUBlastX LINE_L2 12648 12971 83 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold43026 WUBlastX DNA_TcMar-Tc1 197274 197729 145 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LTR_Pao 179621 180142 433 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 195518 195919 74 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold1754 WUBlastX DNA_hAT-Tip100 214405 214713 120 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_hAT-Tip100 214879 215121 144 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-Ac 486264 487511 257 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Ac 487615 487692 39 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Ac 488220 488606 87 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold410 WUBlastX LINE_L1-Tx1 527464 529215 277 + . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LTR_Gypsy 3112 3660 31 - . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX DNA_IS4EU 177195 177815 361 + . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold1687 WUBlastX DNA_IS4EU 178375 178560 98 + . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold36872 WUBlastX DNA_TcMar-Marin 27653 28318 352 - . . . . . -1 -1 -1 . . . scaffold40894 WUBlastX DNA_hAT 50173 51843 558 + . . scaffold40894 GLEAN mRNA 44869 65614 1 + . ID=CGI_10004538; C26812 WUBlastX LINE_L1-Tx1 2681 4192 411 - . . . . . -1 -1 -1 . . . scaffold41388 WUBlastX LINE_RTE-X 8261 9379 465 - . . . . . -1 -1 -1 . . . C22322 WUBlastX LINE_L1-Tx1 965 1507 205 - . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LINE_L1 6680 7141 69 + . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LTR_DIRS 59786 60370 390 - . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LTR_DIRS 60495 61205 141 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L1-Tx1 297762 298277 121 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 32677 34578 444 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold593 WUBlastX LTR_Gypsy 498780 499160 147 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_IS4EU 92305 92562 29 - . . . . . -1 -1 -1 . . . C31156 WUBlastX DNA_hAT-Ac 2316 2495 34 - . . . . . -1 -1 -1 . . . scaffold38898 WUBlastX LTR_Ngaro 4065 4841 207 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Gypsy 119245 119892 556 + . . scaffold1350 GLEAN mRNA 116715 124816 0.68864 + . ID=CGI_10017298; scaffold1350 WUBlastX LTR_Gypsy 119245 119892 556 + . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold22 WUBlastX LINE_L2 1085013 1085276 135 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; C26936 WUBlastX LTR_Gypsy 1484 2260 314 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold1035 WUBlastX DNA_En-Spm 146199 147053 420 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 129825 130049 72 + . . . . . -1 -1 -1 . . . scaffold93 WUBlastX DNA_Kolobok 17189 18688 547 + . . scaffold93 GLEAN mRNA 16355 18715 0.999695 + . ID=CGI_10002718; scaffold1258 WUBlastX DNA_Maverick 848061 849302 540 + . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 142525 143310 591 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Sola 453109 453990 442 + . . . . . -1 -1 -1 . . . scaffold498 WUBlastX DNA_Sola 232594 233475 442 - . . scaffold498 GLEAN mRNA 228451 286019 0.470322 + . ID=CGI_10012431; scaffold1428 WUBlastX DNA_Sola 10731 11612 442 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_CR1 262477 263007 336 - . . . . . -1 -1 -1 . . . scaffold532 WUBlastX LINE_CR1 74393 74494 20 - . . . . . -1 -1 -1 . . . C25762 WUBlastX LTR_Gypsy-Cigr 2636 3472 683 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Gypsy 1174504 1175271 274 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_Ngaro 325415 326440 612 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 49346 49807 282 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-BovB 185018 185440 236 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-BovB 185434 185790 184 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LINE_L1 60600 60920 117 - . . . . . -1 -1 -1 . . . C26240 WUBlastX LINE_L1-Tx1 6 986 665 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LTR_Gypsy 772958 774082 699 - . . . . . -1 -1 -1 . . . scaffold1901 WUBlastX LINE_CR1-L2 20229 21311 256 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L1-Tx1 1256553 1257506 631 + . . . . . -1 -1 -1 . . . scaffold39754 WUBlastX LTR_Pao 12162 12515 54 + . . scaffold39754 GLEAN mRNA 11997 16678 0.584385 + . ID=CGI_10003598; scaffold44098 WUBlastX LINE_CR1 194641 195459 476 + . . scaffold44098 GLEAN mRNA 188555 213785 0.544557 + . ID=CGI_10017708; scaffold1535 WUBlastX DNA_Maverick 101019 101162 31 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX DNA_Maverick 101129 101491 202 - . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LTR_DIRS 115471 116478 738 - . . . . . -1 -1 -1 . . . C26966 WUBlastX LTR_DIRS 2971 3978 738 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Pao 184673 186295 708 + . . . . . -1 -1 -1 . . . scaffold33610 WUBlastX LTR_Gypsy 11585 12412 683 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_L1-Tx1 99172 100023 477 + . . scaffold1673 GLEAN mRNA 58935 108305 0.828275 + . ID=CGI_10013571; scaffold1673 WUBlastX LINE_L1-Tx1 100031 100969 158 + . . scaffold1673 GLEAN mRNA 58935 108305 0.828275 + . ID=CGI_10013571; scaffold169 WUBlastX LTR_Gypsy 707171 708175 301 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_L1-Tx1 195171 196733 335 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold43146 WUBlastX LTR_Ngaro 64505 65107 332 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 39501 39821 24 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 100395 100865 87 + . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LTR_Gypsy-Cigr 73335 74990 873 + . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_CR1-L2 45841 46113 44 - . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_L1-Tx1 89476 91377 529 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 336176 337516 445 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 510846 511580 406 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Maverick 161945 163750 411 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy 82354 83055 393 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy 83045 83644 333 + . . . . . -1 -1 -1 . . . C23778 WUBlastX DNA_IS4EU 39 575 320 - . . . . . -1 -1 -1 . . . C23778 WUBlastX DNA_IS4EU 572 1474 502 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 68531 68905 238 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 68881 69816 434 + . . . . . -1 -1 -1 . . . scaffold1401 WUBlastX LINE_RTE-X 3211 4437 616 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_RTE-X 4653 5426 148 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold1213 WUBlastX LTR_Ngaro 1133426 1133851 204 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold1213 WUBlastX LTR_Ngaro 1133881 1134120 140 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold1213 WUBlastX LTR_Ngaro 1134060 1134962 496 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold587 WUBlastX LINE_L2 74332 75069 499 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 418355 418624 127 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 418750 418998 140 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy-Cigr 279690 279929 206 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 758120 758518 181 + . . . . . -1 -1 -1 . . . scaffold37500 WUBlastX DNA_Chapaev 3929 4069 34 - . . scaffold37500 GLEAN mRNA 3122 8833 0.619262 - . ID=CGI_10002381; scaffold38216 WUBlastX LINE_L1 52711 52851 32 + . . . . . -1 -1 -1 . . . scaffold592 WUBlastX LTR_Copia 247661 248059 54 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy 62556 62837 42 - . . . . . -1 -1 -1 . . . C35068 WUBlastX DNA_hAT-Tip100 7386 7673 76 + . . C35068 GLEAN mRNA 2139 13943 0.995001 + . ID=CGI_10001414; scaffold807 WUBlastX DNA_hAT 107704 107946 76 + . . scaffold807 GLEAN mRNA 89667 111642 0.966284 - . ID=CGI_10011456; scaffold43272 WUBlastX DNA_hAT 185030 185275 89 - . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX LINE_CR1-L2 297858 298181 49 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_CR1 365738 365815 23 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_CR1 365954 366079 66 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_CR1-L2 330430 330528 44 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L2 106523 106729 44 - . . scaffold34 GLEAN mRNA 88722 107323 0.942408 + . ID=CGI_10015930; scaffold1066 WUBlastX LINE_Jockey 44666 44959 25 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LINE_CR1 29688 30044 34 + . . . . . -1 -1 -1 . . . scaffold1333 WUBlastX DNA?_Crypton? 54157 54510 28 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold1554 WUBlastX LTR_Gypsy 375888 376121 24 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 489181 489888 54 - . . . . . -1 -1 -1 . . . C12502 WUBlastX LTR_Gypsy 4 192 55 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX DNA_IS4EU 327478 327894 71 + . . scaffold705 GLEAN mRNA 326554 329531 0.318359 + . ID=CGI_10015516; scaffold1452 WUBlastX DNA_IS4EU 69221 69610 82 + . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_IS4EU 141064 141450 59 - . . scaffold1199 GLEAN mRNA 141058 141372 0.573317 - . ID=CGI_10005932; C30500 WUBlastX DNA_IS4EU 6631 7026 79 - . . C30500 GLEAN mRNA 2155 6921 0.993024 - . ID=CGI_10000629; scaffold664 WUBlastX RC_Helitron 660282 660518 40 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX RC_Helitron 660584 660667 20 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1250 WUBlastX DNA_Harbinger 14477 14548 27 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 191096 191416 48 + . . . . . -1 -1 -1 . . . scaffold35 WUBlastX DNA_Harbinger 6910 7056 70 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 102065 102379 24 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX DNA_TcMar-Tc2 132603 132827 66 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_Kolobok-Hyd 241572 241784 26 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX DNA_Kolobok-Hyd 54407 54526 28 - . . . . . -1 -1 -1 . . . scaffold186 WUBlastX DNA_Kolobok-Hyd 26264 27292 26 + . . scaffold186 GLEAN mRNA 25622 26612 0.366701 + . ID=CGI_10012602; scaffold186 WUBlastX DNA_Kolobok-Hyd 26264 27292 26 + . . scaffold186 GLEAN mRNA 26657 27313 0.617824 + . ID=CGI_10012603; scaffold1703 WUBlastX DNA_Kolobok-Hyd 152695 153111 31 - . . scaffold1703 GLEAN mRNA 141021 153045 0.525157 - . ID=CGI_10023043; scaffold934 WUBlastX LINE_L1 245605 245904 37 + . . scaffold934 GLEAN mRNA 244426 254135 0.975523 + . ID=CGI_10015445; C29506 WUBlastX LINE_L1 6196 6615 54 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_L1 106155 106574 50 + . . scaffold541 GLEAN mRNA 106056 107192 0.777728 + . ID=CGI_10022378; scaffold586 WUBlastX LINE_L1 2622 3041 50 + . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX LINE_L1 19847 19954 22 - . . scaffold1442 GLEAN mRNA 5012 20569 0.987275 - . ID=CGI_10003583; scaffold313 WUBlastX LINE_L1-Tx1 1018790 1019044 41 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold1789 WUBlastX DNA_TcMar-Tc1 26240 26605 61 - . . scaffold1789 GLEAN mRNA 24055 30627 0.651132 - . ID=CGI_10003176; scaffold1500 WUBlastX LINE_Penelope 56521 56694 25 + . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LTR_Gypsy 90762 91286 22 + . . scaffold1769 GLEAN mRNA 91038 92183 1 + . ID=CGI_10009237; scaffold399 WUBlastX LINE_Penelope 202464 202808 40 - . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LINE_Penelope 91428 91520 40 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_Penelope 474496 474726 33 - . . . . . -1 -1 -1 . . . scaffold1600 WUBlastX LINE_Proto2 194791 195834 40 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold42508 WUBlastX LINE_RTE-X 149766 149867 56 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-BovB 283781 283948 62 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 501162 501521 44 - . . scaffold363 GLEAN mRNA 500751 501623 1 - . ID=CGI_10019310; scaffold1796 WUBlastX LTR_Gypsy 59922 60146 34 + . . . . . -1 -1 -1 . . . scaffold1726 WUBlastX DNA_hAT-Tip100 232997 233227 68 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_DRE 431961 432005 23 + . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold79 WUBlastX LINE_CR1-L2 159598 159810 74 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L2 330764 330934 22 + . . scaffold1241 GLEAN mRNA 329086 342003 0.999796 + . ID=CGI_10016436; scaffold664 WUBlastX LINE_CR1-L2 191332 191493 50 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LINE_CR1 65023 65298 79 + . . . . . -1 -1 -1 . . . scaffold34528 WUBlastX DNA_Academ 5055 5279 45 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LTR_Pao 439691 440188 35 + . . scaffold632 GLEAN mRNA 439565 440200 0.99507 + . ID=CGI_10018459; scaffold625 WUBlastX LTR_Gypsy 64831 65205 83 + . . scaffold625 GLEAN mRNA 61573 68540 0.101218 + . ID=CGI_10023396; scaffold99 WUBlastX LTR_Gypsy-Cigr 379896 380180 65 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 175138 175284 29 + . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX LTR_Gypsy 119557 119838 75 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold867 WUBlastX LTR_Gypsy 884682 884837 32 + . . scaffold867 GLEAN mRNA 878150 885941 1 + . ID=CGI_10026242; scaffold42640 WUBlastX LINE_L2 50297 50533 81 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Ngaro 400881 401195 52 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy 436774 437220 73 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 350276 350479 79 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_IS4EU 427782 428126 61 - . . scaffold1715 GLEAN mRNA 426914 428141 0.999981 - . ID=CGI_10019675; scaffold1772 WUBlastX DNA_IS4EU 139066 139389 54 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_IS4EU 140612 140935 54 - . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX LINE_Penelope 8808 9077 31 - . . scaffold1031 GLEAN mRNA 3884 11736 0.84103 - . ID=CGI_10019690; scaffold490 WUBlastX LINE_Penelope 171090 171284 37 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 89708 90154 38 - . . . . . -1 -1 -1 . . . C31738 WUBlastX LTR_Ngaro 733 822 47 + . . . . . -1 -1 -1 . . . C31738 WUBlastX LTR_Ngaro 887 991 49 + . . . . . -1 -1 -1 . . . C31846 WUBlastX LINE_L1 1074 1160 21 - . . . . . -1 -1 -1 . . . scaffold296 WUBlastX LINE_L1 6341 6655 29 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_L1 28275 28415 33 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold1600 WUBlastX LINE_L1-Tx1 249511 249606 28 - . . . . . -1 -1 -1 . . . scaffold1600 WUBlastX LINE_L1-Tx1 249978 250100 75 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 130576 131025 56 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 131061 131117 29 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 711043 711117 20 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_Maverick 73387 73686 76 + . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_RTE-X 132877 133125 53 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX DNA_Sola 11155 11532 74 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L1-Tx1 309114 309257 47 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Jockey 1138274 1138450 49 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold1521 WUBlastX LINE_RTE-BovB 335400 335633 51 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_L2 89259 89738 46 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_CR1 350170 350463 59 + . . scaffold721 GLEAN mRNA 350044 360364 0.412686 + . ID=CGI_10022001; scaffold1845 WUBlastX LINE_L2 291994 292464 40 + . . . . . -1 -1 -1 . . . scaffold1706 WUBlastX LINE_CR1 71828 72376 51 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_CR1-L2 310940 311233 75 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Ngaro 54746 54973 54 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold1360 WUBlastX LTR_DIRS 469801 470031 64 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 356199 356288 36 + . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LTR_Gypsy 117476 118057 64 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 117476 118057 64 - . . scaffold751 GLEAN mRNA 117326 117712 0.59015 - . ID=CGI_10017387; scaffold1726 WUBlastX DNA_hAT-Tip100 232997 233152 95 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX RC_Helitron 22805 23329 40 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Gypsy 434063 434401 97 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_L1-Tx1 271881 272300 30 + . . scaffold1736 GLEAN mRNA 268738 276421 0.999662 + . ID=CGI_10020962; scaffold625 WUBlastX LINE_L1 456680 456844 26 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_TcMar-Marin 1136684 1136809 52 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_TcMar-Tc1 38261 38356 41 - . . scaffold337 GLEAN mRNA 31021 61245 0.967748 - . ID=CGI_10028049; scaffold337 WUBlastX DNA_TcMar-Tc1 38353 38463 61 - . . scaffold337 GLEAN mRNA 31021 61245 0.967748 - . ID=CGI_10028049; scaffold1532 WUBlastX LINE_Penelope 1162402 1162677 30 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_Penelope 38851 39261 52 + . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LINE_RTE-X 140468 140530 26 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LINE_RTE-X 57660 57833 21 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 549334 549870 30 + . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX LINE_RTE-X 86001 86303 74 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX LINE_RTE-X 3469 3660 27 + . . scaffold654 GLEAN mRNA 1376 14130 0.499624 - . ID=CGI_10004182; scaffold41436 WUBlastX LINE_RTE-X 85938 86204 102 + . . . . . -1 -1 -1 . . . scaffold42466 WUBlastX LINE_RTE-X 114798 115046 62 + . . scaffold42466 GLEAN mRNA 111968 131665 0.500645 + . ID=CGI_10006942; scaffold1589 WUBlastX LINE_L2 822192 822461 39 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX DNA_hAT-Tip100 28577 28834 89 + . . scaffold1160 GLEAN mRNA 28577 28954 0.995277 + . ID=CGI_10015340; scaffold34942 WUBlastX DNA_hAT-Tip100 14903 15160 89 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold541 WUBlastX LTR_Gypsy-Cigr 598852 599106 97 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 129661 129870 25 - . . . . . -1 -1 -1 . . . scaffold35084 WUBlastX LTR_Gypsy 10974 11090 38 + . . . . . -1 -1 -1 . . . scaffold35084 WUBlastX LTR_Gypsy 11214 11444 86 + . . . . . -1 -1 -1 . . . scaffold1052 WUBlastX LINE_L2 79154 79276 27 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold1117 WUBlastX DNA_Crypton 53257 53460 87 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX RC_Helitron 226874 227017 42 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold382 WUBlastX DNA_IS4EU 35299 35946 83 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX DNA_IS4EU 337771 338418 83 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_I 141360 141755 68 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold43634 WUBlastX DNA_NOF 15102 15281 71 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX DNA_NOF 15700 15798 24 - . . . . . -1 -1 -1 . . . scaffold36802 WUBlastX DNA_MuDR 16056 16280 108 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX DNA_TcMar-Marin 87207 87461 70 + . . scaffold386 GLEAN mRNA 81379 108874 0.997229 - . ID=CGI_10012681; scaffold442 WUBlastX LTR_Gypsy 45764 46177 90 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX DNA_TcMar-Fot1 96247 96633 86 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_Sola 22045 22872 66 + . . scaffold1032 GLEAN mRNA 21338 23952 0.840259 + . ID=CGI_10021656; scaffold728 WUBlastX LINE_L1-Tx1 217293 218231 78 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1-Tx1 790540 790656 47 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_CR1-L2 271188 271373 24 + . . scaffold507 GLEAN mRNA 254357 273838 0.999949 - . ID=CGI_10019093; scaffold689 WUBlastX DNA_Academ 8490 8762 38 + . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LTR_Ngaro 20882 21055 109 - . . scaffold1854 GLEAN mRNA 10780 21821 0.727692 - . ID=CGI_10004409; scaffold1708 WUBlastX LTR_Ngaro 67219 67662 72 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 485316 485726 50 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold853 WUBlastX LTR_Gypsy 449462 449962 48 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold1725 WUBlastX LTR_Gypsy 48944 49471 86 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 140339 140539 107 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold501 WUBlastX LTR_Gypsy 1230643 1230846 123 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LTR_Gypsy 19732 19848 28 + . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 131755 132378 82 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 3706 3882 20 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 477839 478015 20 - . . . . . -1 -1 -1 . . . scaffold793 WUBlastX DNA_hAT-Blackja 62038 62319 50 - . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold630 WUBlastX LTR_Gypsy 269142 269657 88 - . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX DNA_Harbinger 24683 24883 83 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_CR1 602280 602654 93 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_Penelope 69398 69790 106 - . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX LINE_L1 385 1020 81 - . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 26103 26240 40 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold1647 WUBlastX LINE_RTE-BovB 62586 62783 112 + . . . . . -1 -1 -1 . . . scaffold39652 WUBlastX LINE_RTE-X 63095 63349 44 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1240393 1240440 32 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1240769 1240843 44 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-X 266088 266270 93 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; C24900 WUBlastX DNA_Sola 1867 2091 63 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1-Tx1 148522 148866 102 + . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L1-Tx1 90793 90864 26 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 598226 598507 114 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_L1-Tx1 28430 28687 65 + . . scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold582 WUBlastX LINE_CR1-L2 3209 3457 107 - . . . . . -1 -1 -1 . . . scaffold42570 WUBlastX LINE_CR1-L2 16343 16540 97 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold402 WUBlastX LINE_L1 517219 517314 65 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold1009 WUBlastX DNA_PiggyBac 516416 516616 99 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX DNA_En-Spm 364667 365482 35 + . . . . . -1 -1 -1 . . . scaffold75 WUBlastX LTR_Pao 67159 67995 70 - . . scaffold75 GLEAN mRNA 46839 68019 0.92374 - . ID=CGI_10005790; C8047 WUBlastX LTR_Gypsy 6 137 130 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX DNA_Crypton 732124 732453 110 - . . scaffold432 GLEAN mRNA 728697 733393 0.995435 - . ID=CGI_10023120; scaffold140 WUBlastX LTR_Ngaro 136523 136657 45 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX DNA_Harbinger 54851 54970 106 - . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX DNA_Harbinger 39407 39673 93 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_IS4EU 597045 597263 40 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX DNA 15516 15635 50 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold983 WUBlastX LINE_RTE-X 216633 216866 84 - . . . . . -1 -1 -1 . . . C27020 WUBlastX LINE_RTE-X 4155 4343 117 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX LINE_RTE-X 116143 116439 91 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-X 1216589 1216702 41 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_RTE-X 155974 156300 41 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 390167 390514 29 + . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 34797 34985 71 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_PiggyBac 511087 511233 65 - . . scaffold1221 GLEAN mRNA 505287 514877 0.549954 - . ID=CGI_10019748; scaffold1630 WUBlastX LINE_RTE-X 63187 63432 82 - . . . . . -1 -1 -1 . . . scaffold314 WUBlastX LTR_Ngaro 140880 141218 84 + . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_L1-Tx1 211303 211554 59 - . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_L1-Tx1 211550 211627 24 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_PiggyBac 205936 206046 25 - . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LTR_DIRS 304056 304895 22 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX DNA_hAT 305120 305293 53 + . . scaffold753 GLEAN mRNA 305036 306849 0.999228 + . ID=CGI_10014209; scaffold753 WUBlastX DNA_hAT 305695 306210 57 + . . scaffold753 GLEAN mRNA 305036 306849 0.999228 + . ID=CGI_10014209; scaffold1358 WUBlastX LINE_CR1 255187 255834 51 - . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_L2 43650 43853 58 + . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_L2 43822 44028 34 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_CR1-L2 323979 324221 46 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_CR1-L2 324639 324731 24 - . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX DNA_Crypton 109567 109734 22 + . . scaffold1205 GLEAN mRNA 96361 112859 0.994073 - . ID=CGI_10004904; scaffold1205 WUBlastX DNA_Crypton 110065 110244 71 + . . scaffold1205 GLEAN mRNA 96361 112859 0.994073 - . ID=CGI_10004904; scaffold1600 WUBlastX LTR_DIRS 184624 184776 33 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 184624 184776 33 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold40512 WUBlastX LTR_Gypsy 11489 11893 107 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX DNA_IS4EU 35788 35877 54 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX DNA_IS4EU 36142 36351 65 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX DNA_Kolobok-IS4 18522 19019 119 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX DNA_hAT-Blackja 543045 543128 50 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX DNA_Harbinger 546933 546992 21 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 349585 349998 81 + . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX LTR_Gypsy 7754 8503 105 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Kolobok 1580669 1581040 111 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold150 WUBlastX DNA_Kolobok 1581581 1581649 25 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold507 WUBlastX LINE_L1 38005 38184 77 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold433 WUBlastX LINE_L1-Tx1 687207 687464 83 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_L1-Tx1 414042 414218 125 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_L1 185848 186534 65 + . . scaffold784 GLEAN mRNA 178600 195281 0.744931 - . ID=CGI_10024415; scaffold578 WUBlastX LINE_L1 32955 33227 65 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 230163 230231 20 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LTR_Ngaro 966954 967268 27 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold37668 WUBlastX LINE_L1-Tx1 39772 40125 55 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc1 49658 50002 51 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold739 WUBlastX DNA_TcMar-Tc1 91655 92371 80 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_Penelope 673400 673558 40 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Gypsy 54523 54720 50 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold585 WUBlastX LTR_Gypsy-Cigr 70311 70784 130 + . . . . . -1 -1 -1 . . . C28654 WUBlastX LTR_Gypsy-Cigr 965 1726 81 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_I 193727 193855 23 - . . . . . -1 -1 -1 . . . scaffold445 WUBlastX DNA_Kolobok 174015 174257 60 + . . scaffold445 GLEAN mRNA 165031 179035 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX DNA_Kolobok 174015 174257 60 + . . scaffold445 GLEAN mRNA 157494 175078 0.500104 + . ID=CGI_10019431; scaffold445 WUBlastX DNA_Kolobok 174926 175063 21 + . . scaffold445 GLEAN mRNA 165031 179035 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX DNA_Kolobok 174926 175063 21 + . . scaffold445 GLEAN mRNA 157494 175078 0.500104 + . ID=CGI_10019431; scaffold6 WUBlastX LINE_Jockey 448278 449321 41 - . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LTR_Ngaro 12672 13049 127 + . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LINE_RTE-X 10367 10687 52 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LINE_RTE-X 28326 28721 78 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 513795 514004 23 - . . . . . -1 -1 -1 . . . scaffold42794 WUBlastX LINE_RTE-X 135187 135546 134 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LTR_DIRS 42271 42369 24 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 43353 43535 46 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold1682 WUBlastX LINE_Jockey 63244 63534 47 + . . . . . -1 -1 -1 . . . scaffold41164 WUBlastX DNA_hAT 41297 42061 144 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_CR1 561041 561331 27 + . . . . . -1 -1 -1 . . . C26370 WUBlastX LINE_L2 1468 1626 21 - . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_CR1 43760 44434 52 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_L2 366803 367498 112 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 92657 93175 103 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 147911 148072 67 - . . . . . -1 -1 -1 . . . scaffold725 WUBlastX LTR_Gypsy 3 506 156 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Gypsy 512080 512406 133 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold1301 WUBlastX LTR_Ngaro 419945 420001 26 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Ngaro 196164 196262 35 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Kolobok-IS4 606908 607186 96 + . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_R2-Hero 214571 214825 72 + . . . . . -1 -1 -1 . . . scaffold148 WUBlastX DNA_Harbinger 38784 39179 118 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX DNA_P 28709 28897 32 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-BovB 1135664 1135930 115 + . . scaffold867 GLEAN mRNA 1122368 1136269 0.61743 - . ID=CGI_10026263; scaffold43804 WUBlastX LINE_RTE-X 147598 148248 52 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LINE_L2 105061 105756 123 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Pao 816 1052 83 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 571115 571660 161 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 571115 571660 161 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold1026 WUBlastX LINE_Penelope 60945 61172 49 + . . . . . -1 -1 -1 . . . scaffold31308 WUBlastX LTR_Ngaro 8117 8482 159 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1 136820 136903 20 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX DNA_PiggyBac 48930 49028 45 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 260864 261073 45 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 333641 334408 52 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 73503 73919 93 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 74144 75172 246 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 75186 75506 257 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 76487 76648 118 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 76647 76826 135 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Gypsy 141281 141751 124 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_Maverick 341928 342836 629 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_Maverick 343585 344013 124 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_hAT-Ac 339277 339654 219 - . . scaffold90 GLEAN mRNA 319674 344915 0.945886 + . ID=CGI_10015172; scaffold90 WUBlastX DNA_hAT-Ac 340086 340202 39 - . . scaffold90 GLEAN mRNA 319674 344915 0.945886 + . ID=CGI_10015172; scaffold90 WUBlastX DNA_hAT-Ac 340124 341569 715 - . . scaffold90 GLEAN mRNA 319674 344915 0.945886 + . ID=CGI_10015172; scaffold34442 WUBlastX LTR_Ngaro 12595 14118 902 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE 1145343 1145648 56 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 169423 170115 137 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1500 WUBlastX DNA_Crypton 47670 47951 88 - . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX DNA_Crypton 48596 48916 75 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Crypton 254873 255364 97 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Crypton 255387 255575 70 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L2 515177 515878 38 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_L2 211486 211629 53 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Gypsy 135796 136017 30 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX DNA_TcMar-Marin 364475 364915 137 + . . scaffold786 GLEAN mRNA 348664 365361 0.5 - . ID=CGI_10013709; scaffold1328 WUBlastX LINE_Penelope 102653 103096 139 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_Penelope 240392 240832 93 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold35336 WUBlastX LINE_L1 13262 13636 153 + . . . . . -1 -1 -1 . . . scaffold38822 WUBlastX LINE_RTE-X 59025 59402 80 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 1568391 1568558 83 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 589103 589453 21 + . . . . . -1 -1 -1 . . . C29558 WUBlastX LTR_Gypsy 6552 6755 130 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_RTE-X 128253 129914 719 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold169 WUBlastX DNA_Sola 564668 565312 170 + . . scaffold169 GLEAN mRNA 562612 565291 1 + . ID=CGI_10022958; scaffold38006 WUBlastX LINE_L2 44005 44772 358 - . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX LINE_L2 44975 46273 409 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 613326 613796 25 - . . . . . -1 -1 -1 . . . scaffold36748 WUBlastX LINE_RTE-X 14705 15091 166 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy-Cigr 494847 495368 212 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1140096 1140539 242 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Gypsy-Cigr 1040166 1040900 564 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_DIRS 748479 749168 146 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 22977 24476 778 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy-Cigr 747998 748213 95 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_CR1-L2 617626 618090 127 + . . scaffold544 GLEAN mRNA 615493 630959 0.537216 - . ID=CGI_10022576; scaffold1601 WUBlastX LINE_L2 192073 192174 22 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX DNA_TcMar-Fot1 55482 55760 55 + . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Ngaro 131859 132563 108 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX DNA_MuDR 507482 507886 93 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX DNA_MuDR 508194 508487 91 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 382599 382853 21 + . . . . . -1 -1 -1 . . . scaffold308 WUBlastX LINE_RTE-X 111309 111695 68 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 411064 411462 58 + . . . . . -1 -1 -1 . . . scaffold1355 WUBlastX LINE_RTE-X 3723 3830 34 - . . . . . -1 -1 -1 . . . scaffold1355 WUBlastX LINE_RTE-X 3957 4358 105 - . . . . . -1 -1 -1 . . . scaffold35014 WUBlastX DNA_PiggyBac 15391 15504 27 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 15939 16082 36 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold547 WUBlastX DNA_TcMar-Tc1 457475 457627 31 - . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LINE_RTE-X 6346 6594 51 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy-Cigr 99242 100531 194 - . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_CR1 226058 226141 23 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LINE_CR1 88199 88285 28 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LTR_Pao 272502 272900 59 + . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LTR_Gypsy 21416 22348 126 + . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LTR_Gypsy 68067 68822 155 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LINE_L2 123949 124017 20 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 380225 380755 90 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LTR_Gypsy 308910 309353 170 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy 342351 342692 37 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 392683 392895 55 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 393819 394196 121 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 411507 411740 75 + . . . . . -1 -1 -1 . . . scaffold39464 WUBlastX LTR_DIRS 8892 10943 918 - . . . . . -1 -1 -1 . . . scaffold39464 WUBlastX LTR_DIRS 10897 11418 94 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_En-Spm 518382 520682 1125 + . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX DNA_Academ 42999 43343 167 - . . scaffold38784 GLEAN mRNA 30305 58600 0.503077 + . ID=CGI_10002994; scaffold1484 WUBlastX LINE_L2 290093 290329 90 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 212551 212721 84 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LTR_Gypsy 20236 20616 21 + . . . . . -1 -1 -1 . . . C29106 WUBlastX LTR_Ngaro 3258 3617 175 - . . . . . -1 -1 -1 . . . scaffold41054 WUBlastX DNA_hAT-Tip100 76189 76275 37 - . . . . . -1 -1 -1 . . . scaffold41054 WUBlastX DNA_hAT-Tip100 76248 76631 96 - . . . . . -1 -1 -1 . . . scaffold41054 WUBlastX DNA_hAT-Tip100 76950 77231 48 - . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LTR_DIRS 115738 116478 161 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_Penelope 179876 180577 39 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L1-Tx1 89012 89839 20 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1-Tx1 99832 100119 56 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold1546 WUBlastX DNA_TcMar-Fot1 246342 247076 171 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_DIRS 117361 119397 1160 + . . . . . -1 -1 -1 . . . scaffold38196 WUBlastX LINE_RTE-X 27637 29265 739 + . . . . . -1 -1 -1 . . . scaffold42208 WUBlastX LTR_Gypsy 97359 99491 1270 + . . . . . -1 -1 -1 . . . scaffold42184 WUBlastX LINE_RTE-X 105658 108003 1079 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-X 164239 165129 281 + . . scaffold1104 GLEAN mRNA 162897 187197 0.499418 + . ID=CGI_10020361; scaffold1337 WUBlastX LINE_L1-Tx1 299630 301324 662 - . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L1-Tx1 302066 302665 155 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_DIRS 26373 26948 438 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Pao 78496 78690 21 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 39755 40027 72 - . . . . . -1 -1 -1 . . . scaffold38292 WUBlastX LTR_Gypsy-Cigr 46410 46913 190 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold146 WUBlastX LTR_Gypsy 523461 524588 160 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX DNA_IS4EU 274672 274836 78 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 195293 195721 32 + . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX DNA_TcMar-Tc1 153118 153276 100 - . . scaffold1447 GLEAN mRNA 145066 154561 0.838589 - . ID=CGI_10013818; scaffold1352 WUBlastX DNA_TcMar-Tc1 172261 173013 153 - . . scaffold1352 GLEAN mRNA 168784 185855 0.640433 - . ID=CGI_10018412; scaffold172 WUBlastX LINE_L2 43453 43752 123 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_RTE-X 402990 403373 29 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold43630 WUBlastX LINE_RTE-X 283675 284004 63 + . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LINE_RTE-BovB 15685 16119 70 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_RTE-X 121946 122242 170 + . . . . . -1 -1 -1 . . . scaffold40270 WUBlastX LTR_Ngaro 5855 6382 128 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 452464 453006 114 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_RTE-X 330036 330344 126 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_L1-Tx1 155429 155890 123 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_L1-Tx1 311807 312268 123 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA 46878 47024 32 - . . scaffold40680 GLEAN mRNA 46860 47045 0.545835 - . ID=CGI_10004355; scaffold392 WUBlastX LINE_L2 760125 760997 393 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L2 760949 761731 547 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L2 762228 762986 228 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 5496 7658 1418 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LINE_RTE-X 38707 41958 1031 + . . . . . -1 -1 -1 . . . C21496 WUBlastX DNA_IS 226 1128 1497 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1210653 1211162 174 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Ngaro 355710 356327 195 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L1-Tx1 197073 197369 216 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L1 629552 630244 136 - . . . . . -1 -1 -1 . . . scaffold43240 WUBlastX DNA_TcMar-Tc1 142726 143136 94 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 100672 100875 191 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Pao 18 1895 1482 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LTR_Gypsy 62677 63507 193 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 286174 286659 76 + . . scaffold440 GLEAN mRNA 284962 311438 0.999351 + . ID=CGI_10014144; scaffold601 WUBlastX LTR_Gypsy 437062 437553 130 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 143780 143998 31 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy-Cigr 166230 166892 298 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold126 WUBlastX LTR_Gypsy 477421 477744 245 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 478744 479301 480 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 477744 478757 390 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_CR1-L2 250923 251009 26 - . . . . . -1 -1 -1 . . . scaffold39598 WUBlastX DNA_Kolobok 27074 27613 38 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX DNA_PiggyBac 312940 313056 40 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold1213 WUBlastX LINE_RTE-X 676356 676553 50 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 437751 438032 51 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437751 438032 51 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold4 WUBlastX LINE_RTE-X 98138 98926 145 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX LINE_RTE-X 437489 437830 129 - . . . . . -1 -1 -1 . . . scaffold802 WUBlastX LINE_RTE-X 437799 438056 33 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_L1-Tx1 364698 365309 154 + . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold343 WUBlastX DNA_Maverick 639610 639930 231 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_L1-Tx1 165614 169306 1353 + . . scaffold535 GLEAN mRNA 158110 184507 0.999251 + . ID=CGI_10020284; scaffold634 WUBlastX LTR_Gypsy-Cigr 15020 15559 175 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy-Cigr 15020 15559 175 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold117 WUBlastX LTR_Gypsy-Cigr 381940 382479 174 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold264 WUBlastX LTR_Gypsy 63714 64409 225 + . . scaffold264 GLEAN mRNA 55806 65386 0.919425 + . ID=CGI_10003463; scaffold1353 WUBlastX LINE_L1 17718 17966 65 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_L1 17984 18250 129 + . . . . . -1 -1 -1 . . . scaffold42784 WUBlastX LINE_RTE-BovB 66154 67008 187 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1 23558 23977 63 + . . . . . -1 -1 -1 . . . C25596 WUBlastX LINE_CR1-L2 3165 3293 21 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 229847 229969 64 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 740312 740527 57 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 740527 740757 132 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 741022 741213 43 + . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX LINE_I 254915 255004 34 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX DNA_hAT-hATw 33174 34163 30 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 84055 84138 21 + . . . . . -1 -1 -1 . . . scaffold37292 WUBlastX DNA_TcMar-Tc1 34717 35478 147 - . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX LTR_Copia 148467 150335 826 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Gypsy 200288 202450 1167 + . . scaffold1362 GLEAN mRNA 196782 238172 0.653945 - . ID=CGI_10023934; scaffold1476 WUBlastX LINE_CR1-L2 172389 172553 21 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold126 WUBlastX LTR_Gypsy 146837 147184 53 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_TcMar-Fot1 720822 721250 137 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_TcMar-Fot1 721182 721535 98 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 40189 40296 25 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_TcMar-Tc1 57027 57509 111 + . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_Gypsy 23032 26331 1905 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 88560 91859 1905 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LINE_L1-Tx1 186826 188925 1176 + . . scaffold42880 GLEAN mRNA 184633 197786 1 - . ID=CGI_10007998; scaffold43804 WUBlastX LTR_Gypsy 276232 277740 879 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 277749 278306 421 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 278306 279382 674 - . . . . . -1 -1 -1 . . . scaffold814 WUBlastX LINE_CR1 126180 126260 22 - . . scaffold814 GLEAN mRNA 126235 129167 1 - . ID=CGI_10008199; scaffold963 WUBlastX LTR_Ngaro 290811 291572 188 - . . . . . -1 -1 -1 . . . scaffold37408 WUBlastX LTR_DIRS 3460 4089 210 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX DNA_Harbinger 672954 673109 78 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold141 WUBlastX LINE_L1 40147 40842 197 - . . scaffold141 GLEAN mRNA 34895 61533 0.989288 + . ID=CGI_10006580; scaffold733 WUBlastX LINE_L2 413102 413905 164 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold619 WUBlastX DNA_Maverick 506103 506879 239 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 318244 319680 498 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Pao 198406 198786 27 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold394 WUBlastX LTR_Pao 100818 101963 236 - . . . . . -1 -1 -1 . . . scaffold40744 WUBlastX DNA_Sola 74531 74905 69 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy 114267 114539 87 - . . . . . -1 -1 -1 . . . scaffold40196 WUBlastX DNA_TcMar-Marin 4429 4764 76 - . . . . . -1 -1 -1 . . . scaffold39790 WUBlastX LINE_Penelope 67301 67978 249 + . . . . . -1 -1 -1 . . . scaffold810 WUBlastX LINE_RTE-X 52676 53401 185 - . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1-Tx1 14356 14850 210 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LINE_L2 489181 490398 186 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LTR_Gypsy 163663 163821 53 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_R2-Hero 115117 115296 55 + . . scaffold896 GLEAN mRNA 79994 116374 0.57033 - . ID=CGI_10022832; scaffold48 WUBlastX DNA_Harbinger 716564 716908 154 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_PiggyBac 173431 173847 158 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Ngaro 456160 456639 232 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 636124 636330 61 - . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LTR_Gypsy 104842 105759 251 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX DNA_hAT-Tip100 259352 259861 178 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold1885 WUBlastX DNA_Merlin 209258 209656 211 - . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L1 4952 5833 87 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold77 WUBlastX LINE_RTE-X 978644 979339 178 + . . . . . -1 -1 -1 . . . scaffold878 WUBlastX DNA_TcMar-Tc1 38146 38625 253 + . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LTR_Pao 209029 210396 225 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_CR1 287371 287811 38 + . . . . . -1 -1 -1 . . . scaffold1669 WUBlastX DNA_En-Spm 14623 14961 131 + . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX LTR_Ngaro 122199 122612 286 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_Proto2 265551 267629 182 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_CR1 304797 306677 203 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Pao 101656 103209 145 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Ac 161901 162086 136 + . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX DNA_TcMar-Pogo 2616 2735 37 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_Penelope 141095 141460 39 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LINE_RTE-X 219969 221180 210 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold1858 WUBlastX LINE_RTE-X 108121 109248 219 - . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX DNA_TcMar-Tc1 56772 56987 104 + . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX DNA_TcMar-Tc1 57031 57318 96 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_CR1-L2 63342 63668 78 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX DNA_Sola 114923 116557 277 + . . . . . -1 -1 -1 . . . scaffold64 WUBlastX LTR_DIRS 64546 65820 245 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX DNA_TcMar-Tc1 19481 19816 153 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 84424 84603 55 + . . scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold474 WUBlastX LINE_L2 16406 17203 22 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 10118 10972 231 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 146485 146823 72 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-X 555804 555926 21 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold162 WUBlastX LINE_RTE-X 203180 203962 236 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LTR_Ngaro 272141 272872 269 + . . scaffold71 GLEAN mRNA 268268 281594 0.588785 + . ID=CGI_10015059; scaffold317 WUBlastX LTR_Ngaro 118029 118760 269 + . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX DNA_TcMar-Tc1 61840 62883 239 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_TcMar-Tc1 31720 32259 268 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1-Tx1 128182 129303 205 - . . . . . -1 -1 -1 . . . scaffold1880 WUBlastX LTR_Pao 191440 191916 364 + . . scaffold1880 GLEAN mRNA 190302 194144 1 - . ID=CGI_10008214; C33188 WUBlastX DNA_Harbinger 2494 2691 142 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_L1 55532 55870 123 - . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_L1-Tx1 448642 449553 245 + . . . . . -1 -1 -1 . . . scaffold32356 WUBlastX LTR_Pao 4053 4136 23 - . . . . . -1 -1 -1 . . . scaffold814 WUBlastX LINE_CR1 124245 124925 356 - . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX DNA_Harbinger 8611 8871 45 + . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX DNA_Harbinger 10139 10288 79 + . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX DNA_Harbinger 10740 10901 120 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1-Tx1 126079 127176 92 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold759 WUBlastX LINE_L2 74744 75082 256 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-X 240174 240473 59 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy-Cigr 100436 100687 119 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_IS4EU 271920 272192 261 - . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LINE_RTE-BovB 56154 56339 44 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Maverick 48001 48312 42 - . . . . . -1 -1 -1 . . . scaffold659 WUBlastX DNA_TcMar-Tc1 66831 67187 176 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy-Cigr 61058 61354 76 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 204238 204570 185 + . . . . . -1 -1 -1 . . . scaffold1418 WUBlastX DNA_IS4EU 19213 19563 38 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1 336086 336535 148 + . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-X 298061 298378 175 + . . scaffold1877 GLEAN mRNA 295978 306967 1 + . ID=CGI_10011963; scaffold1154 WUBlastX LTR_DIRS 118196 118768 112 - . . . . . -1 -1 -1 . . . scaffold37046 WUBlastX LINE_L2 4955 5254 42 - . . . . . -1 -1 -1 . . . scaffold37046 WUBlastX LINE_L2 5205 5783 342 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_L2 41582 41917 26 - . . scaffold1717 GLEAN mRNA 33205 46915 0.558386 + . ID=CGI_10013390; scaffold43066 WUBlastX LTR_Ngaro 94425 95072 345 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Gypsy 13220 13999 387 + . . . . . -1 -1 -1 . . . scaffold31538 WUBlastX DNA_Maverick 1542 2177 379 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 164249 164626 37 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Gypsy 208809 209294 170 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_Penelope 555530 556459 380 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 90970 91215 71 - . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LTR_Gypsy 72461 72955 147 - . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_L1-Tx1 240627 241904 227 - . . scaffold378 GLEAN mRNA 222180 244864 0.996816 + . ID=CGI_10017641; scaffold750 WUBlastX LINE_Penelope 130421 130813 235 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_Penelope 131245 131763 68 + . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LINE_L1-Tx1 23601 24107 63 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_DIRS 8424 8717 103 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L1-Tx1 44044 44949 234 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Maverick 400024 400605 353 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Crypton 389172 389720 225 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold1316 WUBlastX DNA_IS4EU 147676 147795 29 + . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_IS4EU 148236 148358 48 + . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_IS4EU 148518 148688 76 + . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_IS4EU 148959 149381 113 + . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_IS4EU 149805 150161 163 + . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LINE_CR1-L2 225119 225313 110 - . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_Sola 135874 136263 201 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_Sola 136507 136650 29 + . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX LTR_Ngaro 36646 36891 26 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L1-Tx1 270371 271897 188 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 78268 78318 21 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LINE_L1 60093 60176 22 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 248415 248756 60 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Gypsy 226222 227316 396 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX DNA_hAT-Tip100 2516 2653 26 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_En-Spm 52447 53223 238 - . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold315 WUBlastX LTR_Gypsy 49612 50805 446 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Gypsy 264342 265658 450 + . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_L1-Tx1 448642 450102 219 + . . . . . -1 -1 -1 . . . scaffold1879 WUBlastX LINE_CR1 120512 122272 357 - . . scaffold1879 GLEAN mRNA 117371 122368 1 - . ID=CGI_10007960; scaffold1759 WUBlastX RC_Helitron 216393 217163 176 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Ngaro 121803 122144 115 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 26670 27170 148 - . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_L1-Tx1 50186 50524 118 - . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_L1-Tx1 50865 51728 316 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-BovB 886024 886191 61 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-BovB 886197 886766 425 + . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_RTE-X 98806 99525 260 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold474 WUBlastX RC_Helitron 104262 104489 103 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LTR_Pao 160412 161143 286 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_DIRS 77921 79372 312 + . . . . . -1 -1 -1 . . . scaffold39174 WUBlastX LTR_DIRS 15492 16439 479 + . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_RTE-X 113673 114935 393 + . . scaffold504 GLEAN mRNA 112041 122139 0.999999 - . ID=CGI_10016018; scaffold99 WUBlastX LTR_Gypsy 529252 530133 359 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LINE_L2 225456 226148 282 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 181914 182540 274 + . . . . . -1 -1 -1 . . . scaffold139 WUBlastX RC_Helitron 19573 19905 218 - . . . . . -1 -1 -1 . . . scaffold43210 WUBlastX DNA_TcMar-Tc1 190936 191289 186 + . . scaffold43210 GLEAN mRNA 171001 198787 0.693179 - . ID=CGI_10009448; scaffold43210 WUBlastX DNA_TcMar-Tc1 191253 191687 191 + . . scaffold43210 GLEAN mRNA 171001 198787 0.693179 - . ID=CGI_10009448; scaffold562 WUBlastX LTR_Gypsy 204017 204448 60 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 163743 165185 383 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_L1-Tx1 55109 55831 84 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LINE_L1-Tx1 317235 318629 449 - . . scaffold794 GLEAN mRNA 308972 320828 0.696321 - . ID=CGI_10017155; scaffold1464 WUBlastX LTR_Gypsy 2980 3441 314 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold1538 WUBlastX LTR_Gypsy 38241 38624 142 - . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX LTR_Ngaro 73227 73676 179 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_DIRS 51930 52319 186 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_DIRS 52319 52561 72 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_DIRS 53720 54304 223 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_DIRS 54414 54902 79 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_IS4EU 191552 192094 303 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_IS4EU 192468 192650 79 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_IS4EU 193188 193655 204 + . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LTR_DIRS 153618 154571 538 + . . scaffold1084 GLEAN mRNA 143113 160475 0.702333 + . ID=CGI_10010078; scaffold301 WUBlastX LINE_L1-Tx1 752 1960 593 - . . . . . -1 -1 -1 . . . scaffold1299 WUBlastX LINE_RTE-BovB 139911 140441 234 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 140527 140601 33 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 141360 141473 71 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold564 WUBlastX LINE_L2 224355 224693 79 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 512757 512945 112 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 512950 513195 118 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 513251 513442 181 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 513643 514875 181 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LTR_Pao 129547 129606 20 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold43686 WUBlastX DNA_Zator 183554 183778 39 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX DNA_Zator 183928 184116 90 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX DNA_Zator 184098 185006 290 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX DNA_Zator 185236 185982 126 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold459 WUBlastX LTR_Pao 37 1899 541 - . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_RTE-X 125630 125794 30 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold661 WUBlastX LINE_L1-Tx1 30618 31772 365 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Ngaro 234078 234479 328 + . . . . . -1 -1 -1 . . . scaffold35822 WUBlastX LINE_RTE-BovB 23692 24537 636 + . . scaffold35822 GLEAN mRNA 19065 26700 1 - . ID=CGI_10001614; scaffold1883 WUBlastX LTR_Gypsy 125823 126287 38 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX DNA_Maverick 63725 63898 80 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX DNA_Maverick 64964 65311 173 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_RTE-X 254323 255909 517 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_DIRS 558512 559111 236 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_L2 91582 91731 29 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 394327 395082 442 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 395031 395402 201 + . . . . . -1 -1 -1 . . . C35760 WUBlastX LTR_Gypsy 26242 26613 26 - . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L1-Tx1 69875 70150 20 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold78 WUBlastX LTR_Gypsy-Cigr 51392 51841 267 - . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LINE_CR1 21447 21704 237 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_RTE-X 148465 149577 376 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1 844760 846001 394 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Pogo 386626 388137 792 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold1671 WUBlastX LTR_Pao 111312 111614 127 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 86117 87604 687 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_RTE-X 84636 85307 389 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold35346 WUBlastX DNA_Maverick 19792 20559 268 + . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LTR_Pao 303157 303651 76 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Gypsy 1235925 1236398 357 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_RTE-X 36666 37067 236 - . . . . . -1 -1 -1 . . . scaffold1644 WUBlastX DNA_Academ 59661 60764 404 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold1241 WUBlastX LINE_L1-Tx1 343574 343810 146 + . . . . . -1 -1 -1 . . . scaffold36452 WUBlastX LTR_Pao 32480 32785 20 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1224638 1225474 216 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 330378 330671 154 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 331303 331794 334 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 177666 179297 817 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold59 WUBlastX LTR_Pao 165925 166452 284 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 432508 432594 49 - . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX LTR_Gypsy 16404 17153 441 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold91 WUBlastX LTR_Gypsy 50658 51194 36 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 131417 131872 30 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LTR_Gypsy 138345 138923 90 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LTR_Gypsy 249109 249735 141 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LTR_Gypsy 122736 122990 53 - . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_Gypsy 165236 165745 54 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LTR_Gypsy 206736 206909 90 + . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Gypsy 103933 104070 78 - . . scaffold43116 GLEAN mRNA 94034 106356 0.999676 - . ID=CGI_10008812; scaffold376 WUBlastX LTR_Gypsy-Cigr 296818 297096 59 - . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX LINE_CR1-L2 280886 281152 53 - . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX LINE_CR1 13861 14052 29 - . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_CR1 254024 254116 44 - . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LINE_L2 32580 32729 64 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_L2 437510 437767 53 - . . . . . -1 -1 -1 . . . scaffold40442 WUBlastX LINE_L2 49021 49158 56 + . . . . . -1 -1 -1 . . . scaffold1206 WUBlastX LINE_L2 29519 29764 38 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L2 159229 159501 21 - . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LINE_CR1-L2 25599 25706 24 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Gypsy 252018 252767 26 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_Gypsy 71540 72106 64 + . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Gypsy 1926 2447 49 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 705044 705184 47 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LTR_Gypsy 49829 49933 45 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 590232 590504 31 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 69609 70073 47 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold610 WUBlastX DNA_Harbinger 125106 125426 63 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_IS4EU 136050 136247 70 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_ERV1 502636 502665 23 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX RC_Helitron 795672 795872 34 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_Jockey 167427 167888 39 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Harbinger 197430 197786 43 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_hAT-hATw 146865 147200 44 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LINE_L1 317383 317502 26 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L1 512090 512128 21 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold37 WUBlastX LINE_Penelope 105732 106217 38 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy 437519 437731 45 + . . . . . -1 -1 -1 . . . scaffold38364 WUBlastX LTR_Gypsy 13620 14162 65 + . . scaffold38364 GLEAN mRNA 13434 14450 0.986568 + . ID=CGI_10002730; scaffold204 WUBlastX LINE_Penelope 842437 842715 58 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold102 WUBlastX LINE_RTE-X 1091970 1092233 52 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 30118 30339 72 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_Maverick 492953 493831 44 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_PiggyBac 192561 192632 22 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Maverick 1365234 1365554 37 - . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_RTE-BovB 264973 265182 29 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 1100273 1100446 57 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_L1-Tx1 225354 225455 45 + . . scaffold925 GLEAN mRNA 224843 231445 0.810337 + . ID=CGI_10017420; C28456 WUBlastX DNA_TcMar-Tc1 2164 2265 58 - . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX LINE_L2 115644 116192 63 + . . scaffold1050 GLEAN mRNA 110488 131637 0.740819 + . ID=CGI_10009172; scaffold4 WUBlastX LINE_CR1 110630 110728 20 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_CR1-L2 124559 124906 63 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_CR1-L2 319185 319373 20 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_CR1 162482 162607 52 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_hAT 465963 466274 86 - . . . . . -1 -1 -1 . . . scaffold775 WUBlastX DNA_Merlin 127917 128264 47 + . . scaffold775 GLEAN mRNA 127511 130349 0.997009 + . ID=CGI_10006094; scaffold142 WUBlastX LTR_Gypsy 1211642 1211773 23 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LTR_Gypsy 263114 263731 51 + . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX LTR_Gypsy 34711 35328 55 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_RTE-BovB 135316 135456 32 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_RTE-BovB 135634 135687 21 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy 159079 159252 99 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 169392 169466 47 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LTR_Ngaro 429502 429603 24 + . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold38904 WUBlastX RC_Helitron 18386 18844 37 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX DNA_IS4EU 234302 234493 28 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 85277 85690 80 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 664845 665129 60 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold406 WUBlastX DNA_Kolobok 376364 376510 51 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_DIRS 118848 119195 49 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_Penelope 369876 370007 31 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 274312 274416 22 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_Penelope 957848 958207 37 + . . scaffold1532 GLEAN mRNA 956349 969868 0.999878 + . ID=CGI_10028276; scaffold1245 WUBlastX DNA_TcMar-Marin 104370 104831 22 - . . scaffold1245 GLEAN mRNA 102403 119670 0.989696 - . ID=CGI_10009226; scaffold695 WUBlastX DNA_TcMar-Fot1 15732 15893 69 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_L1 71520 71612 21 - . . . . . -1 -1 -1 . . . scaffold287 WUBlastX DNA_MuDR 756 1013 73 + . . . . . -1 -1 -1 . . . scaffold41988 WUBlastX DNA_PiggyBac 94568 94819 71 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Maverick 48069 48404 66 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_RTE-BovB 54071 54382 60 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold681 WUBlastX LINE_RTE-RTE 296695 296880 95 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 1243 1518 37 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_RTE-X 215783 215980 50 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 354257 354418 34 + . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LINE_RTE-X 97234 97326 40 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LINE_RTE-X 97328 97441 32 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc2 726119 726409 26 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_RTE-X 73911 74219 74 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1 208288 208539 31 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L1 4974 5171 27 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 375446 375616 32 + . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L1-Tx1 177184 177264 20 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Copia 310958 311026 23 + . . . . . -1 -1 -1 . . . scaffold40808 WUBlastX LINE_CR1-L2 44116 44436 72 - . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX LTR_DIRS? 39335 39469 38 + . . . . . -1 -1 -1 . . . scaffold42032 WUBlastX DNA_Academ 140780 141052 20 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 65237 65305 25 - . . scaffold847 GLEAN mRNA 61092 71360 0.999451 - . ID=CGI_10022265; scaffold37944 WUBlastX LTR_Gypsy 40636 40812 58 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_Gypsy 200647 201174 88 + . . . . . -1 -1 -1 . . . scaffold1371 WUBlastX LTR_Gypsy 104935 105288 100 + . . . . . -1 -1 -1 . . . scaffold1798 WUBlastX DNA_IS4EU 30008 30163 27 - . . . . . -1 -1 -1 . . . scaffold39258 WUBlastX DNA_hAT-Tip100 22748 22903 90 - . . scaffold39258 GLEAN mRNA 21383 23695 0.999661 - . ID=CGI_10003263; scaffold1054 WUBlastX LINE_L1 116892 117116 22 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_Kolobok 7640 7798 24 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX DNA_IS4EU 269216 269920 80 - . . scaffold1448 GLEAN mRNA 269171 271647 0.740287 - . ID=CGI_10011860; scaffold502 WUBlastX LTR_Ngaro 160571 160765 69 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_P 1295122 1295256 58 + . . scaffold1179 GLEAN mRNA 1286843 1305972 0.887369 + . ID=CGI_10027419; scaffold1343 WUBlastX LINE_Penelope 14926 15066 74 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX DNA_MuDR 15474 15635 42 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA_MuDR 15833 16078 55 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold106 WUBlastX LINE_RTE-X 440086 440400 30 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX DNA_Maverick 342849 343130 35 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy-Cigr 23243 23497 57 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold907 WUBlastX LINE_CR1 5529 5687 43 + . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LTR_Copia 184675 184746 24 - . . scaffold474 GLEAN mRNA 184448 184906 0.59015 - . ID=CGI_10007599; scaffold392 WUBlastX LTR_Gypsy-Cigr 35561 35860 92 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold43146 WUBlastX LTR_Pao 12032 12139 32 + . . . . . -1 -1 -1 . . . scaffold35960 WUBlastX DNA_hAT-Tip100 9519 9713 86 + . . scaffold35960 GLEAN mRNA 415 14469 0.999984 - . ID=CGI_10001702; C31414 WUBlastX LTR_Gypsy 6219 6866 61 + . . C31414 GLEAN mRNA 5466 7672 0.561405 + . ID=CGI_10000746; scaffold385 WUBlastX LTR_Gypsy 263003 263614 58 + . . . . . -1 -1 -1 . . . scaffold37946 WUBlastX LTR_Gypsy 14050 14505 106 - . . scaffold37946 GLEAN mRNA 2025 20198 0.734311 + . ID=CGI_10002553; scaffold40054 WUBlastX LTR_Ngaro 54250 54561 88 - . . . . . -1 -1 -1 . . . C32888 WUBlastX LINE_L2 11852 11944 27 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 37631 37768 71 - . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX RC_Helitron 15799 15975 39 + . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX RC_Helitron 15955 16254 74 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_I 235773 235814 20 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold207 WUBlastX DNA_Kolobok-IS4 23384 23902 89 - . . . . . -1 -1 -1 . . . C28108 WUBlastX LTR_Gypsy 2 517 63 + . . . . . -1 -1 -1 . . . scaffold1230 WUBlastX DNA_TcMar-Tc1 94197 94370 46 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_Penelope 56505 56615 25 + . . . . . -1 -1 -1 . . . scaffold1230 WUBlastX LINE_L1 63571 64017 72 + . . scaffold1230 GLEAN mRNA 56388 93654 0.514803 - . ID=CGI_10004423; scaffold1230 WUBlastX LINE_L1 63571 64017 72 + . . scaffold1230 GLEAN mRNA 61857 71757 0.544345 + . ID=CGI_10004424; scaffold1210 WUBlastX DNA_Kolobok 400932 401126 63 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LINE_L1-Tx1 62861 63142 59 - . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX DNA_Maverick 10966 11595 38 + . . . . . -1 -1 -1 . . . scaffold1481 WUBlastX LINE_RTE-X 9379 9639 60 + . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_RTE-X 79149 79283 34 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_Telomeric 296551 296895 89 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX DNA_hAT-Tip100 201430 201957 77 + . . scaffold660 GLEAN mRNA 201436 201984 0.999661 + . ID=CGI_10013753; scaffold1061 WUBlastX DNA_PiggyBac 156223 156354 23 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_L2 258807 258998 29 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_L2 259048 259191 44 + . . . . . -1 -1 -1 . . . scaffold34000 WUBlastX LINE_CR1-L2 7851 7952 37 - . . . . . -1 -1 -1 . . . scaffold40808 WUBlastX LINE_CR1-L2 44014 44379 73 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_L2 265460 265570 35 + . . . . . -1 -1 -1 . . . scaffold34244 WUBlastX LTR_DIRS 151 474 81 + . . . . . -1 -1 -1 . . . scaffold34244 WUBlastX LTR_DIRS 679 867 49 + . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_Ngaro 138959 139087 38 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold977 WUBlastX LTR_Ngaro 312631 312723 51 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Gypsy 582894 583211 45 - . . . . . -1 -1 -1 . . . scaffold1672 WUBlastX LTR_Gypsy 77310 77585 31 + . . scaffold1672 GLEAN mRNA 76156 80299 1 - . ID=CGI_10004943; scaffold1672 WUBlastX LTR_Gypsy 77310 77585 31 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; C22430 WUBlastX LTR_Gypsy 1605 1667 47 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_IS4EU 252500 252625 29 - . . scaffold126 GLEAN mRNA 251015 257085 0.999956 + . ID=CGI_10019188; C31466 WUBlastX RC_Helitron 3993 4391 49 - . . . . . -1 -1 -1 . . . scaffold400 WUBlastX RC_Helitron 193431 193715 105 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1-Tx1 258923 259096 33 + . . . . . -1 -1 -1 . . . C34200 WUBlastX LINE_L1 903 1142 34 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1 1594476 1594739 104 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LTR_Ngaro 39557 39790 33 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LTR_Ngaro 39779 39955 63 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 598031 598108 28 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold1259 WUBlastX DNA_MuDR 16589 16795 22 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1670 WUBlastX LINE_RTE-X 417691 417858 106 + . . . . . -1 -1 -1 . . . scaffold39744 WUBlastX LINE_RTE-X 23716 23865 108 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 359335 359598 68 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_RTE-X 669898 670344 31 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_Maverick 121254 122135 67 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX DNA_Maverick 120233 120304 23 - . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX LINE_RTE-BovB 4966 5226 71 + . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX LINE_RTE-BovB 5249 5566 44 + . . scaffold42994 GLEAN mRNA 5441 10039 0.836758 + . ID=CGI_10008312; scaffold634 WUBlastX DNA_TcMar-Marin 8303 8581 37 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX DNA_Sola 158464 158607 49 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold575 WUBlastX DNA_Sola 159123 159185 25 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold1219 WUBlastX LINE_L1-Tx1 742049 742408 59 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_L1-Tx1 870343 870828 30 - . . scaffold1219 GLEAN mRNA 868848 874682 0.999351 + . ID=CGI_10024304; scaffold41882 WUBlastX LINE_L1-Tx1 136000 136344 107 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_CR1-L2 414131 414424 63 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_CR1 3750 3875 61 + . . . . . -1 -1 -1 . . . scaffold41470 WUBlastX DNA_TcMar-ISRm1 105481 106128 70 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_DIRS 118564 118881 49 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 421893 422201 115 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold599 WUBlastX DNA_IS4EU 463931 464197 64 + . . scaffold599 GLEAN mRNA 453980 472237 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 463931 464197 64 + . . scaffold599 GLEAN mRNA 456252 477114 0.953927 + . ID=CGI_10021726; scaffold38360 WUBlastX LTR_Gypsy 49385 49702 47 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L1 272033 272857 98 + . . . . . -1 -1 -1 . . . scaffold542 WUBlastX DNA_Harbinger 381511 381630 139 - . . . . . -1 -1 -1 . . . scaffold42348 WUBlastX DNA_TcMar-Fot1 4240 4491 102 - . . . . . -1 -1 -1 . . . scaffold391 WUBlastX LINE_L1 6406 6936 93 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1 167639 168232 88 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 705324 705506 62 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 368970 369218 127 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L2 238571 238855 84 + . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX LINE_CR1 20865 21416 105 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_CR1-L2 215000 215515 59 + . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold40420 WUBlastX LTR_Ngaro 89114 89467 97 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_RTE-BovB 103790 104299 85 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX DNA_Harbinger 177734 178015 112 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_Harbinger 82356 82712 131 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 526856 527314 116 - . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LTR_Gypsy 543425 543565 84 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Ngaro 24907 25446 55 - . . . . . -1 -1 -1 . . . scaffold441 WUBlastX LTR_Ngaro 4962 5597 52 - . . . . . -1 -1 -1 . . . scaffold1266 WUBlastX LTR_Ngaro 61700 61786 24 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LINE_Penelope 50274 50606 105 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_CR1 264563 265051 20 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_RTE-X 82719 83183 120 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-X 796658 796750 41 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 796960 797088 51 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold916 WUBlastX LINE_RTE-X 73905 73997 23 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L1-Tx1 301579 301950 51 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_CR1 449863 449946 22 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_Gypsy-Cigr 200863 201483 105 + . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LTR_Gypsy-Cigr 321446 322069 109 + . . scaffold43818 GLEAN mRNA 318880 322672 0.37766 + . ID=CGI_10012777; scaffold337 WUBlastX LINE_I 1091607 1091822 52 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L2 262407 262463 24 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_L2 83461 83907 83 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX LTR_ERV1 3610 3891 30 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Gypsy 13283 14200 80 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1256346 1257263 93 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 269039 269191 59 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LTR_Gypsy 158448 159257 85 - . . scaffold1241 GLEAN mRNA 158229 159365 0.555898 - . ID=CGI_10016428; scaffold1800 WUBlastX LTR_Ngaro 356250 356567 126 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 350118 350267 143 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 472046 472168 30 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_IS4EU 552624 552962 115 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX RC_Helitron 117196 117699 131 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_R2-Hero 572379 572495 89 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_hAT-hATw 266636 266908 45 - . . . . . -1 -1 -1 . . . scaffold666 WUBlastX LTR_Ngaro 9482 9547 23 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_L1-Tx1 280140 280430 38 + . . scaffold767 GLEAN mRNA 267592 288448 0.433091 + . ID=CGI_10014846; scaffold1258 WUBlastX LINE_L1-Tx1 149125 149400 73 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX LINE_RTE-X 132497 132760 134 + . . . . . -1 -1 -1 . . . scaffold636 WUBlastX LINE_L1-Tx1 42937 43176 111 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_CR1-L2 312549 312629 25 - . . . . . -1 -1 -1 . . . scaffold749 WUBlastX DNA_Crypton 17884 18183 62 - . . . . . -1 -1 -1 . . . scaffold749 WUBlastX DNA_Crypton 18604 18804 54 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Gypsy-Cigr 52727 53905 140 + . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX LTR_Gypsy 42198 42521 46 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Harbinger 70121 70423 34 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 322704 322739 22 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_ERV1 204873 205109 44 - . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LTR_Ngaro 71796 72095 94 - . . . . . -1 -1 -1 . . . scaffold1374 WUBlastX LINE_RTE-X 15286 15600 111 + . . . . . -1 -1 -1 . . . scaffold617 WUBlastX DNA_Maverick 2434 2589 38 + . . . . . -1 -1 -1 . . . scaffold617 WUBlastX DNA_Maverick 3190 3342 78 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_Sola 224389 224820 150 + . . . . . -1 -1 -1 . . . scaffold1696 WUBlastX LTR_DIRS 79771 80085 139 + . . . . . -1 -1 -1 . . . C35794 WUBlastX LINE_CR1 12890 13183 29 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_Rex-Babar 335418 335522 27 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold38006 WUBlastX LINE_L2 25845 26150 158 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LTR_DIRS 303932 304051 42 + . . . . . -1 -1 -1 . . . scaffold1191 WUBlastX LTR_DIRS? 85005 85382 132 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold82 WUBlastX RC_Helitron 771781 771882 41 + . . . . . -1 -1 -1 . . . scaffold43134 WUBlastX DNA_IS4EU 211056 211280 45 + . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold169 WUBlastX LINE_L1-Tx1 773196 773330 43 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1 173924 174079 37 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_L1-Tx1 754033 754389 51 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_L1-Tx1 35928 36509 119 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold33046 WUBlastX DNA_Maverick 11727 11942 92 + . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX LINE_RTE-X 113201 113461 27 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold531 WUBlastX LINE_RTE-X 19679 19750 47 + . . . . . -1 -1 -1 . . . scaffold1508 WUBlastX LINE_RTE-X 173925 174251 101 + . . . . . -1 -1 -1 . . . scaffold1508 WUBlastX LINE_RTE-X 175074 175136 22 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_RTE-X 245955 246347 84 - . . scaffold266 GLEAN mRNA 236877 257451 0.649405 - . ID=CGI_10013355; scaffold39652 WUBlastX LINE_RTE-X 63746 63835 42 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_TcMar-Tc1 304550 304840 86 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_L1-Tx1 81866 82183 93 - . . scaffold828 GLEAN mRNA 78778 92221 0.986584 - . ID=CGI_10007365; scaffold606 WUBlastX LINE_L1-Tx1 17728 18195 40 + . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LTR_Ngaro 2288 3850 891 + . . . . . -1 -1 -1 . . . scaffold39122 WUBlastX LINE_L1-Tx1 59848 61149 857 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 342043 343026 496 + . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LINE_RTE-X 95133 96356 897 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 664407 665417 314 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 665788 666294 322 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 38386 39042 530 - . . . . . -1 -1 -1 . . . C24184 WUBlastX LTR_Gypsy 2 343 313 + . . . . . -1 -1 -1 . . . C24184 WUBlastX LTR_Gypsy 310 1335 653 + . . . . . -1 -1 -1 . . . scaffold1886 WUBlastX LINE_RTE-X 142795 144720 800 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LTR_Pao 179720 180355 683 - . . scaffold756 GLEAN mRNA 174962 194451 0.721563 + . ID=CGI_10016458; scaffold756 WUBlastX LTR_Pao 180333 180701 388 - . . scaffold756 GLEAN mRNA 174962 194451 0.721563 + . ID=CGI_10016458; scaffold1512 WUBlastX LTR_DIRS 467596 469539 912 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LTR_Ngaro 29244 29876 61 - . . scaffold42880 GLEAN mRNA 29055 29522 0.999999 - . ID=CGI_10007997; scaffold203 WUBlastX LTR_Ngaro 151638 152270 61 + . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX LTR_Ngaro 17564 17725 46 + . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_Kolobok-IS4 11296 11586 24 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 43133 43768 140 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_RTE-X 110475 112088 39 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 495753 495842 40 + . . scaffold107 GLEAN mRNA 482349 496880 0.436429 + . ID=CGI_10025056; scaffold107 WUBlastX LINE_RTE-X 496035 496829 47 + . . scaffold107 GLEAN mRNA 482349 496880 0.436429 + . ID=CGI_10025056; scaffold1347 WUBlastX LINE_RTE-X 141865 142209 57 + . . scaffold1347 GLEAN mRNA 133564 144148 0.49238 + . ID=CGI_10012974; scaffold86 WUBlastX LINE_Proto2 668860 669531 112 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Pao 101469 102233 616 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Ngaro 505436 505933 460 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Ngaro 505872 506159 114 - . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LTR_Gypsy 29783 30400 132 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_R2-Hero 343404 344411 499 + . . scaffold712 GLEAN mRNA 336086 347992 0.995237 + . ID=CGI_10016485; scaffold1258 WUBlastX LTR_Gypsy 392845 394455 1075 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-BovB 707622 708818 1036 - . . scaffold1149 GLEAN mRNA 706264 722133 0.605293 + . ID=CGI_10023478; C30186 WUBlastX LINE_RTE-X 5643 7520 961 + . . . . . -1 -1 -1 . . . scaffold1087 WUBlastX LTR_Gypsy 13249 14553 696 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold1350 WUBlastX LINE_RTE-X 490571 491749 510 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 491763 492641 420 - . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LTR_Gypsy-Cigr 49940 50425 152 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Ngaro 317163 317936 112 - . . scaffold1670 GLEAN mRNA 315570 334176 0.999676 + . ID=CGI_10017618; scaffold36872 WUBlastX LTR_Gypsy 10537 10896 84 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 10756 10827 25 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 138970 139623 114 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold36904 WUBlastX DNA_IS4EU 38012 38314 115 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1-Tx1 388350 388985 106 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 90382 90495 40 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; C18324 WUBlastX LTR_Gypsy 68 508 165 + . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_RTE-X 96175 96399 91 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 10187 10876 606 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 10957 11397 348 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 11396 11791 127 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_L1-Tx1 193750 194139 131 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_L1-Tx1 194186 195007 469 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_L1-Tx1 194944 195246 123 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_L1-Tx1 195279 195599 105 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Maverick 529947 530204 149 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 515955 516380 129 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1141571 1141933 147 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 157083 157646 288 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold1480 WUBlastX LINE_R2 159699 160028 144 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold38116 WUBlastX LTR_Pao 2756 2923 37 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 101051 101275 33 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Ngaro 543273 543998 158 + . . . . . -1 -1 -1 . . . scaffold952 WUBlastX LTR_Ngaro 10349 11383 71 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LTR_DIRS 194655 195044 99 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LTR_Ngaro 177823 178107 178 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_DIRS 287636 287860 65 - . . . . . -1 -1 -1 . . . scaffold33840 WUBlastX LINE_L2 7184 7642 158 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_Harbinger 18212 18355 69 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold756 WUBlastX DNA_Harbinger 405442 405822 159 - . . . . . -1 -1 -1 . . . C34110 WUBlastX DNA_IS4EU 13655 14392 134 - . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold579 WUBlastX LINE_Penelope 216759 217058 155 - . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold34696 WUBlastX DNA_Maverick 19773 20060 114 - . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX DNA_Maverick 42588 42974 115 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 940581 941486 65 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LINE_RTE-BovB 236624 237460 118 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_RTE-X 171763 172131 117 - . . scaffold31 GLEAN mRNA 167305 183497 0.965717 + . ID=CGI_10013560; scaffold40054 WUBlastX LINE_RTE-X 28169 28585 130 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX DNA_Sola 13466 13603 49 + . . . . . -1 -1 -1 . . . scaffold38510 WUBlastX DNA_Sola 30638 30829 46 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold1204 WUBlastX LTR_Pao 99802 100017 103 + . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LINE_L2 6402 8069 1105 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 581687 582835 775 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 582942 583187 61 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Pao 572658 577130 620 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1-Tx1 152541 152927 37 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_TcMar-Tc1 755847 756464 157 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_TcMar-Tc1 316337 316654 56 + . . . . . -1 -1 -1 . . . scaffold42634 WUBlastX LINE_CR1-L2 10853 11488 37 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LTR_Ngaro 181046 181177 28 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_Penelope 480474 480995 173 - . . . . . -1 -1 -1 . . . scaffold389 WUBlastX DNA_TcMar-Tc1 78884 79057 23 - . . . . . -1 -1 -1 . . . scaffold389 WUBlastX DNA_TcMar-Tc1 79069 79617 73 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX DNA_Sola 12602 12844 65 - . . . . . -1 -1 -1 . . . C33510 WUBlastX LINE_RTE-X 5987 6328 34 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX DNA_TcMar-Tc2 107609 107998 129 - . . scaffold950 GLEAN mRNA 86388 112962 1 - . ID=CGI_10022920; scaffold1561 WUBlastX LINE_RTE-X 16436 17650 490 - . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold1561 WUBlastX LINE_RTE-X 17656 18228 367 - . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold42704 WUBlastX LINE_L1-Tx1 175129 175770 293 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_L1-Tx1 175719 176255 219 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_L1-Tx1 176207 176653 372 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_L1-Tx1 176652 177227 333 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_L2 125170 125613 102 + . . scaffold1698 GLEAN mRNA 115530 127809 0.999999 + . ID=CGI_10019370; scaffold35694 WUBlastX LINE_R2-Hero 17604 17819 38 - . . . . . -1 -1 -1 . . . scaffold35694 WUBlastX LINE_R2-Hero 18208 18840 52 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX DNA_Harbinger 37174 37359 70 - . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold287 WUBlastX LINE_L1 63015 63239 27 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-BovB 40846 41184 44 - . . scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold1009 WUBlastX LTR_Copia 167708 170077 1469 - . . scaffold1009 GLEAN mRNA 163164 171986 0.959931 - . ID=CGI_10028721; scaffold1362 WUBlastX LTR_Gypsy-Cigr 201032 203992 1285 + . . scaffold1362 GLEAN mRNA 196782 238172 0.653945 - . ID=CGI_10023934; scaffold1093 WUBlastX LINE_L2 50141 50236 33 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 11340 11507 34 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Harbinger 189578 189832 38 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Harbinger 189829 189987 58 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX DNA_Kolobok 292104 292223 20 + . . scaffold394 GLEAN mRNA 286632 296945 0.296609 + . ID=CGI_10022077; scaffold34192 WUBlastX DNA_Kolobok 6734 6853 20 - . . . . . -1 -1 -1 . . . scaffold42364 WUBlastX LINE_L1 105994 106233 97 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L1 71303 71542 97 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1 162813 162923 32 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_L1 589655 589723 32 + . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_L1-Tx1 142966 143193 72 - . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_L1-Tx1 143477 143617 81 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX DNA_PiggyBac 642548 642652 28 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX DNA_PiggyBac 643796 644059 66 - . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX LINE_L1-Tx1 19608 19829 74 - . . scaffold1442 GLEAN mRNA 5012 20569 0.987275 - . ID=CGI_10003583; scaffold1894 WUBlastX LTR_Gypsy 206763 207197 48 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy-Cigr 678347 679270 369 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 1100449 1101780 536 - . . scaffold156 GLEAN mRNA 1094153 1105194 0.982183 - . ID=CGI_10026543; scaffold1599 WUBlastX LTR_Gypsy 678194 679579 939 - . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold825 WUBlastX LTR_DIRS 99603 101051 780 - . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LTR_DIRS 101057 101455 357 - . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LTR_DIRS 102271 103098 230 - . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Pao 22637 24064 752 + . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy-Cigr 1121 2119 221 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 403884 404183 198 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Ngaro 876167 876553 122 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Ngaro 877462 877752 52 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_L1 131962 132126 28 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold933 WUBlastX DNA_Maverick 408132 408458 74 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 940751 941704 112 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_TcMar-Tc1 316681 316962 98 + . . . . . -1 -1 -1 . . . scaffold914 WUBlastX RC_Helitron 325514 328345 1637 + . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 92603 93094 136 + . . . . . -1 -1 -1 . . . scaffold1859 WUBlastX LINE_RTE-X 46387 46947 160 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Copia 165270 166955 204 - . . scaffold1009 GLEAN mRNA 163164 171986 0.959931 - . ID=CGI_10028721; scaffold358 WUBlastX DNA_IS4EU 21060 21923 148 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX DNA_IS4EU 22123 22587 20 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LTR_Gypsy 209060 209293 44 - . . . . . -1 -1 -1 . . . scaffold1622 WUBlastX LINE_Penelope 2636 3052 203 + . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LINE_RTE-X 329055 329189 39 + . . scaffold43818 GLEAN mRNA 325023 332374 0.596002 + . ID=CGI_10012778; scaffold614 WUBlastX LINE_RTE-X 259301 259381 29 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_RTE-X 217861 218055 30 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_Proto2 56319 56861 84 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-BovB 277703 278152 139 - . . . . . -1 -1 -1 . . . scaffold42604 WUBlastX DNA_TcMar-Tc1 108211 108462 89 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 5122 5907 532 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_CR1-L2 357461 358030 184 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 586335 587246 152 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Gypsy 494749 495669 157 + . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX DNA_Kolobok-IS4 327187 327309 62 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 43015 43305 170 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_L1 51250 51654 168 + . . . . . -1 -1 -1 . . . C34200 WUBlastX LINE_L1-Tx1 454 732 161 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 66223 66678 173 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold1318 WUBlastX DNA_Maverick 164625 165068 174 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 435300 435524 121 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_TcMar-Tc1 174755 175465 201 - . . scaffold772 GLEAN mRNA 173305 179319 1 + . ID=CGI_10016584; scaffold386 WUBlastX LTR_Gypsy-Cigr 46703 47023 208 + . . . . . -1 -1 -1 . . . C28958 WUBlastX LTR_Gypsy-Cigr 2953 3432 178 + . . . . . -1 -1 -1 . . . scaffold907 WUBlastX LINE_L2 14393 14680 33 + . . . . . -1 -1 -1 . . . scaffold907 WUBlastX LINE_L2 14729 14962 35 + . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LINE_L1 9005 9070 22 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_Penelope 192084 192701 179 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_RTE-BovB 105322 105963 99 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 843595 844404 109 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_RTE-X 84683 84748 30 - . . . . . -1 -1 -1 . . . scaffold1514 WUBlastX DNA_Kolobok-IS4 57860 58333 233 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 268489 268857 57 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 810048 810182 20 - . . . . . -1 -1 -1 . . . scaffold38272 WUBlastX LINE_L1-Tx1 38746 38937 28 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold32230 WUBlastX LTR_Gypsy 6023 6289 180 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-BovB 348907 349698 600 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-BovB 349707 349922 73 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-BovB 349838 350995 738 - . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX LINE_RTE-BovB 46621 47550 125 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_RTE-X 761462 762280 210 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX LTR_DIRS 388022 388849 137 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX LTR_DIRS 388853 388987 23 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX LTR_DIRS 388969 389232 39 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 1035 1160 20 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L2 66786 67232 139 + . . . . . -1 -1 -1 . . . scaffold272 WUBlastX LINE_L2 45847 46089 72 + . . scaffold272 GLEAN mRNA 32744 62954 0.999882 + . ID=CGI_10003057; scaffold41560 WUBlastX LINE_Jockey 96859 97206 36 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_Kolobok 183507 183692 26 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold34888 WUBlastX LINE_L1-Tx1 7858 7944 49 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX DNA_IS4EU 95837 96307 255 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_TcMar-Fot1 67219 67932 67 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_RTE-X 234482 234835 94 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_RTE-X 234829 235146 60 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_RTE-X 98053 98370 60 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_RTE-X 98364 98717 94 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX DNA_Sola 115536 116141 191 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1-Tx1 85948 86823 115 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_Gypsy 453431 453505 20 + . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX LTR_Ngaro 19013 19237 109 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1607767 1608075 77 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold1722 WUBlastX DNA_TcMar-Marin 374784 375140 71 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_TcMar-Fot1 4972 5505 144 - . . scaffold20 GLEAN mRNA 478 8308 1 - . ID=CGI_10023555; C34256 WUBlastX DNA_Kolobok 11007 11147 37 + . . C34256 GLEAN mRNA 10416 11159 1 + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 11547 11702 51 + . . . . . -1 -1 -1 . . . C34256 WUBlastX DNA_Kolobok 10014 10295 130 + . . C34256 GLEAN mRNA 8451 10352 0.999999 + . ID=CGI_10001257; scaffold370 WUBlastX LINE_L1-Tx1 980622 981395 233 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-X 270420 270761 68 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L2 822898 823260 68 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LTR_Pao 129672 130253 467 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold601 WUBlastX LINE_CR1 1085413 1085751 126 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy 191146 191349 20 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Harbinger 118368 118592 42 + . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1-Tx1 13539 14150 22 - . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1-Tx1 14308 14931 101 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LINE_L1 462703 463122 103 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LINE_L1-Tx1 214770 215393 173 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 92124 92420 56 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 330184 330501 126 + . . scaffold1583 GLEAN mRNA 329253 340870 0.998703 - . ID=CGI_10025825; scaffold38650 WUBlastX DNA_Maverick 47225 47383 101 - . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX DNA_Maverick 47407 47514 82 - . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX DNA_Maverick 47538 47723 23 - . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX DNA_Maverick 48133 48330 100 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_L1-Tx1 366435 366671 79 + . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX DNA_TcMar-Tc1 260646 260879 48 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 795252 795317 27 + . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX LINE_CR1-L2 37187 38215 265 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_IS4EU 657803 658153 56 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold337 WUBlastX LTR_Ngaro 88495 89184 150 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX DNA_Maverick 505837 505950 36 + . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_RTE-X 142120 142302 46 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 229221 229661 135 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Ngaro 710530 710895 192 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Pao 348592 350460 1326 + . . . . . -1 -1 -1 . . . scaffold711 WUBlastX DNA_hAT 183366 183527 41 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_DIRS 24610 24945 171 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold43146 WUBlastX LTR_Ngaro 65836 66105 145 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Gypsy 520395 521066 343 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_Helitron 162788 163708 309 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_L1 23911 24690 256 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_L1 58302 59081 256 - . . . . . -1 -1 -1 . . . scaffold951 WUBlastX LINE_RTE-X 198426 198884 327 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Tc1 1109509 1110414 292 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1-L2 585747 586235 331 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-BovB 1167461 1167874 145 + . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 40361 40423 29 - . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX DNA_TcMar-Tc1 79575 79868 142 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_PiggyBac 114506 114616 77 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 438052 438321 137 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 438052 438321 137 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1758 WUBlastX LINE_L1 147709 147837 21 + . . . . . -1 -1 -1 . . . scaffold40420 WUBlastX LTR_Ngaro 89846 90655 242 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 1151866 1151925 20 + . . . . . -1 -1 -1 . . . scaffold827 WUBlastX LINE_Proto2 47534 48391 125 - . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LINE_L1-Tx1 100191 100421 72 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold196 WUBlastX LINE_Penelope 392 1201 254 - . . . . . -1 -1 -1 . . . scaffold33704 WUBlastX LTR_DIRS 9019 9564 294 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 323902 324345 154 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold365 WUBlastX LTR_Pao 251995 252378 29 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold562 WUBlastX LTR_Ngaro 140986 141756 317 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_En-Spm 193030 193308 145 - . . . . . -1 -1 -1 . . . scaffold42214 WUBlastX LTR_Gypsy 14762 15259 210 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_Kolobok-IS4 183340 184092 334 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L1 203430 203477 27 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_MuDR 413829 414755 307 - . . scaffold406 GLEAN mRNA 402781 436007 0.999901 + . ID=CGI_10023847; scaffold1058 WUBlastX DNA_Harbinger 50036 50641 303 + . . . . . -1 -1 -1 . . . scaffold27654 WUBlastX DNA_IS4EU 4249 4701 326 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1-Tx1 89480 89701 42 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 362840 363031 78 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX DNA_TcMar-Tc1 340584 341171 264 + . . scaffold578 GLEAN mRNA 339528 348737 0.999218 - . ID=CGI_10015129; scaffold1670 WUBlastX LINE_CR1 398726 399004 219 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; C30224 WUBlastX LINE_L2 2808 3740 263 - . . . . . -1 -1 -1 . . . scaffold219 WUBlastX DNA_hAT-Tip100 431907 433376 300 + . . . . . -1 -1 -1 . . . scaffold33980 WUBlastX DNA_hAT-Tip100 2800 2979 47 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold177 WUBlastX LTR_Ngaro 42564 42941 163 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 758344 758676 83 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_Gypsy 45567 46730 381 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_RTE-X 483837 484112 140 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Pao 1023090 1023560 23 - . . . . . -1 -1 -1 . . . scaffold38152 WUBlastX DNA_hAT-hATw 6737 8071 152 - . . scaffold38152 GLEAN mRNA 1846 12564 0.999993 - . ID=CGI_10002678; scaffold118 WUBlastX DNA_MuDR 18669 19061 108 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_RTE-X 217830 218537 301 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_TcMar-Marin 408334 408711 152 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_TcMar-Marin 407450 407854 228 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX DNA_TcMar-Tc1 53512 53562 31 - . . . . . -1 -1 -1 . . . scaffold1503 WUBlastX DNA_TcMar-Tc1 56379 56981 303 - . . scaffold1503 GLEAN mRNA 55967 67698 1 + . ID=CGI_10009528; scaffold40560 WUBlastX DNA_Harbinger 56261 56407 45 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold1836 WUBlastX LINE_L1-Tx1 111860 112393 197 + . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LINE_RTE-X 235775 236350 250 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_Sola 338342 338953 37 - . . . . . -1 -1 -1 . . . scaffold407 WUBlastX LINE_L2 14561 14896 197 + . . scaffold407 GLEAN mRNA 13072 17204 0.999998 + . ID=CGI_10002626; scaffold407 WUBlastX LINE_L2 14896 15492 214 + . . scaffold407 GLEAN mRNA 13072 17204 0.999998 + . ID=CGI_10002626; scaffold1507 WUBlastX LTR_Ngaro 13353 13787 108 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold502 WUBlastX LTR_Gypsy 473048 473608 103 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_IS4EU 108090 108434 196 - . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_RTE-X 70732 71493 213 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold43964 WUBlastX LINE_RTE-X 4 1032 139 - . . . . . -1 -1 -1 . . . scaffold40560 WUBlastX DNA_Harbinger 55649 55960 86 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold3 WUBlastX LTR_Ngaro 1316434 1316787 143 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1316759 1317388 283 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold31 WUBlastX DNA_Maverick 215242 215865 424 - . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_TcMar-Tc1 361899 362912 390 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Ngaro 225226 225414 28 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold440 WUBlastX LTR_Gypsy 40271 40387 35 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy-Cigr 692254 693828 271 - . . . . . -1 -1 -1 . . . scaffold40560 WUBlastX DNA_Harbinger 56407 56529 63 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 57072 57326 190 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 58070 58294 47 + . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold578 WUBlastX DNA_Kolobok 23013 23216 90 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 23359 23532 88 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 24000 24188 78 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 24329 24862 210 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold43146 WUBlastX LTR_Ngaro 63559 64266 240 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 860831 861721 293 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1360 WUBlastX LINE_L1 500877 500951 31 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_RTE-X 291507 292091 328 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_RTE-X 292069 292296 65 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 416599 417627 343 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold1741 WUBlastX DNA_En-Spm 89744 90691 378 + . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 38116 38547 42 - . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Ngaro 77331 78539 380 + . . . . . -1 -1 -1 . . . scaffold743 WUBlastX DNA_Harbinger 135710 135757 30 - . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_RTE-X 69625 70383 169 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold837 WUBlastX LTR_Gypsy-Cigr 7163 7354 102 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LINE_RTE-BovB 398718 398873 56 + . . scaffold723 GLEAN mRNA 395743 409753 0.999949 - . ID=CGI_10015275; scaffold723 WUBlastX LINE_RTE-BovB 398878 399879 440 + . . scaffold723 GLEAN mRNA 395743 409753 0.999949 - . ID=CGI_10015275; scaffold531 WUBlastX LTR_Gypsy 331112 331453 224 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 462199 463122 76 - . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_L1-Tx1 219651 219863 58 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LTR_Gypsy 165174 166637 325 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 765647 766681 124 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX DNA_TcMar-Marin 173451 174470 610 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_Maverick 466772 467845 489 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LINE_L1-Tx1 3304 3759 21 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy 335591 337876 435 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_hAT-Tip100 163568 164227 222 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_hAT-Tip100 164655 165056 216 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_hAT-Tip100 165070 165474 168 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LTR_Gypsy 32356 32943 218 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_Harbinger 179261 179449 88 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_Maverick 183243 183572 195 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy-Cigr 954803 955333 536 + . . . . . -1 -1 -1 . . . scaffold32526 WUBlastX LTR_Gypsy 11116 11970 711 - . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_RTE-X 19357 19617 27 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_RTE-X 19983 21266 230 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L1 539827 540486 341 - . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX DNA_hAT-Tip100 33677 34531 275 + . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX DNA_hAT-Tip100 34534 35985 332 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_RTE-X 105502 105867 63 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold1490 WUBlastX LTR_Gypsy 156592 157089 299 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LTR_Gypsy 157269 157511 50 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 151166 151576 122 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold317 WUBlastX LTR_Gypsy 524441 524608 29 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 35216 36994 700 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 498178 498474 147 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_Harbinger 201779 202771 684 - . . . . . -1 -1 -1 . . . scaffold42326 WUBlastX DNA_TcMar-Fot1 10372 11622 717 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LINE_Penelope 113152 114627 651 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 765623 765964 213 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 542099 542320 29 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 104733 105176 23 + . . . . . -1 -1 -1 . . . scaffold858 WUBlastX LINE_L2 15398 16354 569 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold38152 WUBlastX LTR_Gypsy-Cigr 48205 49833 563 - . . . . . -1 -1 -1 . . . scaffold1822 WUBlastX LTR_Gypsy 10383 11990 436 + . . . . . -1 -1 -1 . . . scaffold1767 WUBlastX LINE_L1-Tx1 93699 95615 458 + . . scaffold1767 GLEAN mRNA 93032 98652 0.99967 + . ID=CGI_10016907; scaffold1431 WUBlastX LTR_Gypsy-Cigr 90728 91345 496 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-X 756757 757512 124 + . . . . . -1 -1 -1 . . . scaffold37698 WUBlastX LINE_L1-Tx1 40136 41896 326 - . . . . . -1 -1 -1 . . . scaffold37698 WUBlastX LINE_L1-Tx1 41883 42389 211 - . . . . . -1 -1 -1 . . . scaffold493 WUBlastX LINE_RTE-X 778 2214 715 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L1-Tx1 1295141 1295272 36 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_DIRS 91504 91638 57 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold1101 WUBlastX LINE_RTE-X 148502 149179 223 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_RTE-X 149529 150512 257 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold1213 WUBlastX LTR_Gypsy 1235595 1236398 333 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_RTE-X 55846 57102 609 + . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_DIRS 2689 3018 131 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_DIRS 3020 3547 210 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_DIRS 3547 3870 51 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LTR_DIRS 3879 4517 362 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 91238 92236 411 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy-Cigr 279934 280110 151 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 31107 31439 74 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy-Cigr 87403 87759 332 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy 116253 116714 49 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX RC_Helitron 695721 696686 433 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold85 WUBlastX LINE_RTE-BovB 13560 14102 352 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_RTE-BovB 14202 14453 169 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_RTE-BovB 14464 15174 354 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 181548 182369 24 + . . scaffold22 GLEAN mRNA 157108 183005 0.71876 + . ID=CGI_10028831; scaffold146 WUBlastX DNA_hAT-Ac 762646 762954 55 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_L1 164138 164554 40 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Copia 82832 83680 39 + . . scaffold221 GLEAN mRNA 82988 83629 0.999661 + . ID=CGI_10008345; scaffold58 WUBlastX LTR_Pao 544610 544690 36 + . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LINE_CR1 83958 84131 45 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_CR1-L2 17880 17999 79 - . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_CR1-L2 207316 207582 35 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 14036 14278 46 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_DIRS 633800 633952 77 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 182727 182765 26 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_DIRS 512646 513005 44 + . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LTR_Ngaro 128690 128986 32 - . . . . . -1 -1 -1 . . . C31446 WUBlastX LTR_Ngaro 7331 7561 55 + . . . . . -1 -1 -1 . . . scaffold98 WUBlastX LINE_L2 39153 39593 34 - . . scaffold98 GLEAN mRNA 38499 46848 0.998032 - . ID=CGI_10012780; scaffold681 WUBlastX LINE_L2 230160 230330 56 + . . . . . -1 -1 -1 . . . scaffold36390 WUBlastX LTR_Gypsy 21966 22121 39 - . . . . . -1 -1 -1 . . . scaffold36390 WUBlastX LTR_Gypsy 22136 22273 66 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_Jockey 175132 175191 23 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_Jockey 62372 62587 38 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_IS4EU 50334 50528 52 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX DNA_IS4EU 65528 65704 36 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX DNA_Kolobok-IS4 229664 229867 44 + . . scaffold1610 GLEAN mRNA 228132 243894 0.862915 + . ID=CGI_10016503; scaffold1687 WUBlastX DNA_IS4EU 179567 179776 46 - . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold192 WUBlastX LTR_Gypsy 665028 665150 86 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold43280 WUBlastX LTR_Gypsy 170840 170974 67 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold43182 WUBlastX LTR_Gypsy 166266 166469 41 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1480 WUBlastX DNA_Harbinger 73783 73971 72 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_L1-Tx1 669588 669797 29 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L1 1045630 1045845 61 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L1-Tx1 415031 415420 27 + . . scaffold1785 GLEAN mRNA 409073 415432 1 + . ID=CGI_10024384; scaffold1016 WUBlastX LINE_L1 130908 130991 20 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_Penelope 172887 173084 27 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_Penelope 507187 507237 24 - . . . . . -1 -1 -1 . . . scaffold1728 WUBlastX DNA_TcMar-Marin 43727 43939 62 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_L2 223518 223772 46 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 789871 790092 46 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 268426 268956 22 + . . scaffold43726 GLEAN mRNA 249575 275240 0.78038 + . ID=CGI_10012028; scaffold156 WUBlastX LINE_RTE-X 328012 328179 51 - . . scaffold156 GLEAN mRNA 326940 337481 0.63561 + . ID=CGI_10026496; scaffold515 WUBlastX LINE_RTE-X 2465 2671 47 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 188569 188658 24 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold1241 WUBlastX LINE_RTE-X 413721 414161 33 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_RTE-RTE 485952 486098 46 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold42274 WUBlastX LINE_RTE-BovB 62498 62626 38 - . . scaffold42274 GLEAN mRNA 45055 72181 0.998895 + . ID=CGI_10006512; scaffold54 WUBlastX LINE_RTE-BovB 634033 634083 20 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_Maverick 266985 267104 23 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX DNA_Maverick 7152 7418 46 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_DIRS 645291 645506 57 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 67304 67486 51 - . . . . . -1 -1 -1 . . . scaffold36494 WUBlastX DNA_Sola 13342 13524 74 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 281042 281422 33 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold593 WUBlastX LINE_CR1 224995 225357 78 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L2 26199 26357 20 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_L2 114378 114668 35 - . . scaffold42392 GLEAN mRNA 99459 124879 0.476918 + . ID=CGI_10006785; scaffold443 WUBlastX LTR_Copia 713689 714777 57 - . . . . . -1 -1 -1 . . . scaffold1333 WUBlastX LTR_DIRS 54214 54450 56 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold30818 WUBlastX LTR_Gypsy-Cigr 6151 6837 54 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_CR1 175891 176109 21 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_hAT-Tag1 590382 590951 70 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold39960 WUBlastX LTR_Gypsy 49820 50542 34 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy-Cigr 1455463 1455546 29 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX DNA_IS4EU 192397 193050 60 + . . scaffold13 GLEAN mRNA 172056 194004 0.998501 + . ID=CGI_10013207; scaffold39120 WUBlastX DNA_IS4EU 47978 48142 58 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold1874 WUBlastX LINE_L1 296406 296900 24 + . . scaffold1874 GLEAN mRNA 288511 297764 0.52871 + . ID=CGI_10011933; scaffold269 WUBlastX LINE_CR1 197738 198148 81 - . . scaffold269 GLEAN mRNA 192453 200699 0.999993 + . ID=CGI_10018996; scaffold406 WUBlastX DNA_TcMar-ISRm1 664369 664932 55 - . . scaffold406 GLEAN mRNA 664336 664629 0.776794 - . ID=CGI_10023865; scaffold38804 WUBlastX DNA_TcMar-Tc1 56224 56340 56 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX DNA_Maverick 260780 260935 37 + . . . . . -1 -1 -1 . . . scaffold38824 WUBlastX LINE_RTE-BovB 21650 21781 21 - . . . . . -1 -1 -1 . . . scaffold38804 WUBlastX LINE_RTE-X 11285 11458 71 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Tc2 71869 72288 61 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX DNA_TcMar-Marin 7580 7771 52 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy 76520 76609 25 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX DNA_TcMar-Tc1 66802 66867 22 - . . scaffold1651 GLEAN mRNA 64291 72997 0.999027 + . ID=CGI_10007888; scaffold38376 WUBlastX LINE_L1-Tx1 42504 42761 80 + . . . . . -1 -1 -1 . . . scaffold35238 WUBlastX LINE_L1-Tx1 3065 3196 42 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX DNA_hAT-Tip100 354618 354848 59 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold113 WUBlastX LINE_L2 25060 25134 22 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_CR1-L2 388460 388600 46 - . . scaffold583 GLEAN mRNA 365612 390201 0.692695 - . ID=CGI_10023621; scaffold513 WUBlastX LINE_L2 706617 706778 78 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 801348 801743 93 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold37002 WUBlastX LINE_L2 8394 8891 69 + . . . . . -1 -1 -1 . . . scaffold129 WUBlastX LTR_DIRS 16973 17383 52 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 221733 222257 36 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX RC_Helitron 1083982 1084488 30 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Harbinger 64784 65065 61 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L1 15375 16166 40 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold502 WUBlastX LTR_Gypsy 468344 468508 102 + . . . . . -1 -1 -1 . . . C23216 WUBlastX LTR_Gypsy 1129 1731 50 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 93422 93970 72 - . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_Gypsy 71705 72166 89 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_DIRS 24465 25127 50 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_Penelope 68745 68954 76 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_Penelope 977573 977809 44 + . . scaffold149 GLEAN mRNA 977738 985587 0.998126 + . ID=CGI_10025334; scaffold1727 WUBlastX DNA_NOF 18215 18541 38 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_L1-Tx1 3610 3744 50 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX DNA_IS4EU 102555 102659 39 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_RTE-X 309697 309840 66 - . . . . . -1 -1 -1 . . . scaffold43240 WUBlastX LINE_RTE-X 154990 155430 28 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 104538 104942 43 + . . . . . -1 -1 -1 . . . C30752 WUBlastX LINE_RTE-X 47 178 69 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_RTE-X 398328 398741 55 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_RTE-X 3335 3679 57 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LINE_RTE-X 169127 169414 35 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1-Tx1 322621 322770 53 + . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX LINE_L1-Tx1 3 272 64 + . . . . . -1 -1 -1 . . . C29632 WUBlastX LINE_CR1-L2 6591 6869 84 + . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_CR1-L2 10010 10693 56 + . . . . . -1 -1 -1 . . . scaffold39598 WUBlastX LINE_L1 11549 11656 36 - . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX DNA_PiggyBac 195680 195802 79 + . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_L2 216227 216289 29 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold101 WUBlastX LTR_Gypsy 591377 591652 100 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LTR_Gypsy 290591 290665 22 - . . . . . -1 -1 -1 . . . scaffold582 WUBlastX DNA_Harbinger 29590 29832 82 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_Harbinger 72065 72316 81 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Harbinger 396060 396215 90 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_hAT-Tip100 280374 280535 110 - . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_P 111651 111917 86 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_RTE-BovB 143678 143830 94 - . . scaffold43026 GLEAN mRNA 135566 144191 0.699088 + . ID=CGI_10008550; scaffold1469 WUBlastX LINE_RTE-BovB 70943 71059 65 - . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX LINE_RTE-BovB 124204 124386 81 - . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_R2 6611 6700 22 - . . . . . -1 -1 -1 . . . scaffold37788 WUBlastX LINE_RTE-X 42903 42983 41 - . . . . . -1 -1 -1 . . . scaffold452 WUBlastX LINE_RTE-X 12205 12432 95 + . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LINE_RTE-X 35530 35814 87 - . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_RTE-X 86298 86546 93 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold1077 WUBlastX LINE_RTE-X 81431 81766 47 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-X 84743 84868 46 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_RTE-X 12578 12880 94 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Gypsy-Troyk 200611 200775 102 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_L1 113 538 61 + . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX LTR_Pao 129740 130096 101 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 12156 12332 74 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_CR1-L2 141819 142118 87 - . . . . . -1 -1 -1 . . . C30662 WUBlastX LINE_Rex-Babar 996 1103 23 - . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LINE_L2 33562 34227 79 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 372691 373428 69 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy 202794 203471 93 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 229820 229966 32 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy 30677 31099 92 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_Penelope 115331 115633 39 + . . scaffold1773 GLEAN mRNA 113483 121773 0.995285 + . ID=CGI_10011228; scaffold139 WUBlastX DNA_NOF 21728 21976 68 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1-Tx1 73582 73830 62 - . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold1031 WUBlastX LINE_L1 33646 34386 82 + . . . . . -1 -1 -1 . . . C22312 WUBlastX LINE_RTE-X 1065 1226 107 - . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_RTE-X 29354 29884 95 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LTR_DIRS 93875 94213 115 - . . scaffold1749 GLEAN mRNA 92161 94954 0.876214 - . ID=CGI_10008254; scaffold1149 WUBlastX DNA_TcMar-Tc1 674475 674612 23 + . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LINE_CR1 17983 18162 65 + . . . . . -1 -1 -1 . . . scaffold42570 WUBlastX LINE_CR1 16551 16760 94 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; C29618 WUBlastX LINE_CR1 6262 6807 78 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX DNA_Merlin 13081 13284 121 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_L1 467229 467528 84 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 214023 214247 137 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LTR_Gypsy 91759 92451 96 - . . . . . -1 -1 -1 . . . scaffold76 WUBlastX LTR_ERVK 23280 23591 20 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Ngaro 877958 878080 28 + . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LTR_DIRS 66055 66333 87 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_DIRS 462751 463755 25 - . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX LTR_Gypsy 182072 182350 114 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_L1 670179 670610 59 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_TcMar-Tc2 323609 323764 43 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 1225840 1226364 29 - . . scaffold1009 GLEAN mRNA 1197147 1238817 0.350484 + . ID=CGI_10028788; scaffold240 WUBlastX LINE_RTE-X 28347 28637 85 + . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_RTE-X 70823 71251 40 - . . scaffold43054 GLEAN mRNA 69561 76829 0.990615 + . ID=CGI_10008597; scaffold43130 WUBlastX LINE_RTE-X 122180 122704 27 + . . scaffold43130 GLEAN mRNA 99127 140133 0.992485 - . ID=CGI_10008963; scaffold43726 WUBlastX LINE_RTE-X 211625 211867 85 - . . scaffold43726 GLEAN mRNA 209540 218835 0.998187 - . ID=CGI_10012026; scaffold847 WUBlastX LTR_Gypsy 597713 598096 128 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold1024 WUBlastX DNA_PiggyBac 1059834 1060631 100 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_RTE-BovB 206501 206650 44 - . . scaffold509 GLEAN mRNA 180574 211213 0.998586 - . ID=CGI_10018644; scaffold191 WUBlastX LINE_L1-Tx1 686969 687244 79 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_L1-Tx1 14636 14737 32 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold1500 WUBlastX DNA_Academ 72827 73021 74 - . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1-L2 49692 49940 133 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_CR1 337849 338217 81 + . . . . . -1 -1 -1 . . . scaffold38194 WUBlastX LTR_Gypsy 49316 49810 118 + . . . . . -1 -1 -1 . . . scaffold40560 WUBlastX DNA_Harbinger 59483 59593 67 - . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 60566 60706 58 - . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold1623 WUBlastX DNA_Harbinger 33273 33785 79 + . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LINE_Jockey 31877 31933 26 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1 27651 28067 34 - . . . . . -1 -1 -1 . . . C26402 WUBlastX LINE_L1 3132 3269 53 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1 352795 353433 89 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold1100 WUBlastX LINE_L1 188569 188775 125 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX DNA_Kolobok 84306 84449 73 + . . scaffold685 GLEAN mRNA 83408 84482 1 + . ID=CGI_10004493; scaffold22 WUBlastX LINE_RTE-BovB 1569333 1569506 97 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-BovB 905901 905963 50 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_RTE-X 214501 214875 74 + . . . . . -1 -1 -1 . . . scaffold908 WUBlastX LINE_RTE-BovB 220250 220363 64 + . . . . . -1 -1 -1 . . . scaffold908 WUBlastX LINE_RTE-BovB 220365 220454 38 + . . . . . -1 -1 -1 . . . scaffold908 WUBlastX LINE_RTE-BovB 220468 220554 21 + . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX LINE_RTE-X 16422 16658 69 - . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_PiggyBac 173365 173895 95 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX LINE_L2 593685 594149 89 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold43038 WUBlastX LINE_CR1 54 284 83 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L2 150882 150950 25 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold773 WUBlastX LINE_L2 150964 151032 29 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold1131 WUBlastX LINE_L2 268180 268338 20 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L2 268542 269060 54 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Pao 314847 314906 23 + . . . . . -1 -1 -1 . . . scaffold193 WUBlastX LTR_Gypsy-Cigr 248779 248913 106 - . . scaffold193 GLEAN mRNA 245779 268914 0.906792 - . ID=CGI_10015232; C29010 WUBlastX LTR_DIRS 4534 5181 53 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX DNA_En-Spm 128162 128464 78 - . . scaffold206 GLEAN mRNA 123903 131741 0.999975 - . ID=CGI_10011374; scaffold22 WUBlastX LTR_Ngaro 1838227 1838646 127 - . . . . . -1 -1 -1 . . . scaffold34442 WUBlastX LTR_Ngaro 12030 12530 46 + . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 59396 59545 34 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1 878271 878672 111 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_L1 20811 20879 21 + . . . . . -1 -1 -1 . . . scaffold227 WUBlastX LINE_Penelope 307314 308150 70 + . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LINE_RTE-X 8379 8660 73 + . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_RTE-X 43468 43722 106 - . . scaffold398 GLEAN mRNA 36290 48236 0.999674 + . ID=CGI_10004361; scaffold733 WUBlastX LINE_RTE-X 789620 790396 39 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_RTE-X 292903 293226 93 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LINE_RTE-X 99838 100110 94 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_RTE-X 106573 107055 52 + . . . . . -1 -1 -1 . . . scaffold49 WUBlastX LINE_RTE-X 315628 315747 22 + . . . . . -1 -1 -1 . . . scaffold49 WUBlastX LINE_RTE-X 315787 315909 109 + . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LINE_RTE-X 293572 293640 32 + . . scaffold1865 GLEAN mRNA 265949 318343 0.640148 - . ID=CGI_10013547; scaffold817 WUBlastX LTR_Copia 54990 56162 120 - . . scaffold817 GLEAN mRNA 54160 69177 0.983542 - . ID=CGI_10008657; scaffold43630 WUBlastX LINE_CR1-L2 53250 53708 60 + . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_CR1 100500 100547 22 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold962 WUBlastX LINE_CR1-L2 1088080 1088187 57 + . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold1816 WUBlastX LTR_Gypsy-Cigr 306298 306765 150 - . . . . . -1 -1 -1 . . . scaffold38194 WUBlastX LTR_Gypsy 49499 49807 162 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_hAT-Ac 566878 567237 156 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Marin 439195 439911 77 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX DNA_TcMar-Fot1 99677 99913 161 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_L1 293934 294173 50 - . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LINE_Penelope 36705 36977 34 + . . scaffold680 GLEAN mRNA 28858 40321 0.544852 - . ID=CGI_10003337; scaffold126 WUBlastX LINE_RTE-BovB 323780 324022 29 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_RTE-X 7328 7831 70 - . . . . . -1 -1 -1 . . . scaffold37790 WUBlastX LINE_L1-Tx1 44554 44658 47 - . . . . . -1 -1 -1 . . . C34174 WUBlastX LINE_CR1-L2 15263 15382 68 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LTR_Pao 223967 224323 184 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_DIRS 97011 97268 75 + . . . . . -1 -1 -1 . . . scaffold465 WUBlastX DNA_Kolobok-IS4 70161 70715 115 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_R2-Hero 35467 35808 135 - . . scaffold1670 GLEAN mRNA 20416 44429 0.542324 + . ID=CGI_10017595; scaffold1670 WUBlastX LINE_R2-Hero 36071 36199 34 - . . scaffold1670 GLEAN mRNA 20416 44429 0.542324 + . ID=CGI_10017595; scaffold453 WUBlastX RC_Helitron 222774 223109 181 - . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX DNA_Harbinger 58962 59138 44 + . . . . . -1 -1 -1 . . . C26402 WUBlastX LINE_L1-Tx1 3260 3433 84 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Ngaro 223521 224009 88 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold867 WUBlastX LTR_Ngaro 141823 142113 149 - . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LINE_Penelope 9123 9506 123 - . . . . . -1 -1 -1 . . . scaffold98 WUBlastX LINE_RTE-X 246722 247060 106 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 91446 91577 60 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 684181 684681 88 - . . . . . -1 -1 -1 . . . scaffold43184 WUBlastX LINE_RTE-X 196579 196782 55 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 55962 56591 364 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 56560 57228 567 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_RTE-X 14760 16328 798 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Gypsy 113839 114300 228 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LINE_L1 173970 175064 193 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_DIRS 421329 421853 144 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LTR_Ngaro 70582 71058 119 - . . . . . -1 -1 -1 . . . C25876 WUBlastX LTR_Ngaro 2699 3289 89 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 338819 338941 28 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 339049 339327 46 - . . . . . -1 -1 -1 . . . scaffold268 WUBlastX LTR_Ngaro 60860 61081 122 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 215486 215776 43 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold1647 WUBlastX LTR_Gypsy 102937 103170 79 - . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_IS4EU 26420 26599 35 + . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX DNA_Kolobok 119075 119317 139 + . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold1521 WUBlastX LINE_L1 128168 128440 141 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LINE_Penelope 188377 189039 86 + . . . . . -1 -1 -1 . . . scaffold42096 WUBlastX LINE_L2 109040 109399 308 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 109040 109399 308 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_L2 109431 109763 245 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 109431 109763 245 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_L2 109765 110340 336 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 109765 110340 336 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_L2 110328 110705 94 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 110328 110705 94 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold86 WUBlastX LINE_RTE-X 31436 32494 232 + . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LTR_Pao 301830 302387 319 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy 106908 107138 28 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 144849 146810 617 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 146798 147070 111 + . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LTR_DIRS 58849 59181 71 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1-Tx1 153884 154519 53 - . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_CR1 123605 124330 534 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_L1-Tx1 70280 70609 77 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Ngaro 105827 106264 154 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Crypton 758555 759139 123 + . . scaffold313 GLEAN mRNA 734660 773846 0.452737 + . ID=CGI_10026622; scaffold999 WUBlastX DNA_IS4EU 165169 165276 40 + . . . . . -1 -1 -1 . . . C30176 WUBlastX DNA_Harbinger 5211 5261 30 - . . . . . -1 -1 -1 . . . C30176 WUBlastX DNA_Harbinger 5486 5815 161 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-BovB 61083 61202 64 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 581388 581936 69 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold42704 WUBlastX LINE_RTE-X 43688 44209 85 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_RTE-X 41480 41851 159 - . . scaffold602 GLEAN mRNA 13092 44157 0.909253 + . ID=CGI_10023171; scaffold541 WUBlastX LTR_DIRS 28745 29014 137 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX DNA_TcMar-Tc1 312594 313283 115 + . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LINE_L2 454387 455967 936 - . . scaffold756 GLEAN mRNA 435099 464068 0.998247 - . ID=CGI_10016467; scaffold301 WUBlastX LINE_RTE-X 76681 78558 947 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 714263 714976 672 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 127168 127680 336 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 127720 128313 369 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 128319 129452 325 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 129449 129772 56 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_CR1-L2 226547 227041 63 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Pao 320309 320683 107 - . . scaffold160 GLEAN mRNA 319475 320748 0.628364 - . ID=CGI_10020588; scaffold1100 WUBlastX LTR_Gypsy-Cigr 104328 104639 132 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_IS4EU 306939 307286 33 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 591377 591565 151 - . . . . . -1 -1 -1 . . . scaffold129 WUBlastX LINE_L1-Tx1 82507 82845 158 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_L2 493115 493282 24 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 729187 729291 51 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LINE_RTE-X 185227 188514 813 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_L1-Tx1 26041 26823 125 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LINE_CR1 357159 357350 76 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Pao 84952 86841 634 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold676 WUBlastX DNA_IS 181445 182230 1290 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 13182 14438 369 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 201447 202895 566 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_L1 529732 530580 109 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L2 649353 650228 100 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_DIRS 86391 86600 95 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 258562 258636 21 - . . . . . -1 -1 -1 . . . scaffold42662 WUBlastX LTR_Gypsy 180934 181548 189 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_I 53461 53613 29 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_Penelope 187932 188336 92 + . . . . . -1 -1 -1 . . . scaffold35272 WUBlastX LINE_RTE-X 7000 7347 35 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-BovB 678981 679235 73 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1-Tx1 117582 117860 76 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1-Tx1 127727 128059 44 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 376256 376411 25 - . . . . . -1 -1 -1 . . . scaffold1641 WUBlastX LTR_Gypsy-Cigr 233486 233959 173 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 603287 603517 105 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L2 591290 591733 135 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 229351 229800 161 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX DNA_TcMar-Marin 11170 11340 28 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_Penelope 87271 87471 28 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 62416 62760 97 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_TcMar-Tc1 431301 431573 87 - . . . . . -1 -1 -1 . . . scaffold1680 WUBlastX LINE_RTE-X 1941 2417 93 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_L2 581977 584439 1203 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; C29428 WUBlastX LTR_Gypsy 806 1915 826 + . . . . . -1 -1 -1 . . . scaffold33618 WUBlastX LTR_DIRS 4238 4750 355 + . . . . . -1 -1 -1 . . . scaffold33618 WUBlastX LTR_DIRS 4705 5583 645 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_CR1 123728 124321 544 - . . . . . -1 -1 -1 . . . scaffold32550 WUBlastX LTR_Ngaro 509 679 42 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Ngaro 114128 114274 106 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 514948 515091 30 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LTR_Gypsy 193874 194170 223 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 269528 270085 38 - . . . . . -1 -1 -1 . . . scaffold37520 WUBlastX DNA_Harbinger 41137 41376 83 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Marin 418413 418631 116 + . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX DNA_Kolobok 49875 50021 32 + . . scaffold1774 GLEAN mRNA 36391 50061 0.563353 + . ID=CGI_10006376; scaffold43932 WUBlastX LINE_RTE-X 178489 179034 139 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_RTE-X 395460 395543 22 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_Proto2 52398 53405 75 - . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LINE_RTE-X 32798 33565 96 + . . . . . -1 -1 -1 . . . scaffold397 WUBlastX LINE_L1-Tx1 46042 46266 89 - . . . . . -1 -1 -1 . . . C34856 WUBlastX LINE_L1-Tx1 6488 7117 80 - . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold626 WUBlastX LINE_L1-Tx1 503422 503841 57 + . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LTR_Pao 78145 78513 237 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold1009 WUBlastX LTR_Gypsy 1305948 1306394 180 + . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_CR1-L2 203615 206290 1350 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_L1-Tx1 230653 234108 1065 - . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_CR1-L2 1220 1468 83 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 71572 72192 189 + . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_Pao 23887 23976 39 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 608688 609002 132 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_R2-Hero 186070 186330 41 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_R2-Hero 187409 187603 58 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_R2-Hero 187745 187975 31 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Kolobok 373888 374190 77 + . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LINE_Penelope 56281 57432 80 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_MuDR 588750 588962 99 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold296 WUBlastX LINE_RTE-X 4789 5580 122 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_RTE-X 653256 653810 20 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 120966 121217 210 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 1303514 1304320 141 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 1305049 1305660 523 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 268255 268335 45 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 51831 52352 174 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_TcMar-Marin 792535 792873 143 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 1052354 1052758 92 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold992 WUBlastX DNA_Sola 23241 23492 65 - . . . . . -1 -1 -1 . . . scaffold992 WUBlastX DNA_Sola 23589 24176 131 - . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LINE_L1-Tx1 143455 143865 116 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 732112 732324 39 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_CR1-L2 856433 856531 30 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Gypsy 304162 307197 1543 - . . . . . -1 -1 -1 . . . scaffold993 WUBlastX LINE_L2 223771 224181 224 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_Penelope 254839 255231 128 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1046476 1046739 112 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 267198 267527 27 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1469 WUBlastX DNA_IS4EU 40828 41511 164 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_IS4EU 19447 20130 164 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1 336497 336562 36 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 265360 265875 33 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_RTE-X 64631 64915 97 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 624712 625515 609 + . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; C30224 WUBlastX LINE_CR1 4802 4873 20 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy 634956 635927 187 - . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold1154 WUBlastX LTR_Gypsy 472034 472318 138 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 472802 473122 77 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_DIRS 287836 287919 34 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_DIRS 288173 288349 84 - . . . . . -1 -1 -1 . . . scaffold1764 WUBlastX DNA_Kolobok 1820 1888 51 - . . . . . -1 -1 -1 . . . scaffold1764 WUBlastX DNA_Kolobok 1888 2409 71 - . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_RTE-X 7844 8218 67 - . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LINE_RTE-X 75974 76219 113 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 474029 474115 26 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 7606 7692 26 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 484322 484789 121 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LINE_RTE-X 357002 357340 130 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold1711 WUBlastX LTR_Pao 100144 100350 114 - . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX LTR_Ngaro 37271 38533 176 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Gypsy 428801 428920 90 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Gypsy 207160 207438 158 + . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Gypsy 66396 66485 69 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_IS4EU 303702 304031 70 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_IS4EU 304390 304872 103 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_hAT-Ac 237035 237145 55 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 89710 90558 209 - . . . . . -1 -1 -1 . . . scaffold837 WUBlastX LTR_Gypsy 7953 8774 216 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok 956547 956801 101 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok 957251 957418 37 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L1 269225 269764 99 + . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LINE_RTE-X 76270 76641 76 - . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX LINE_RTE-X 6263 6580 68 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 164943 165398 83 + . . scaffold1149 GLEAN mRNA 149088 177869 0.31262 + . ID=CGI_10023454; scaffold582 WUBlastX LTR_Gypsy 38745 39281 195 - . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 40126 40533 215 - . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 41004 41423 299 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 115474 115614 56 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 115736 117691 1052 + . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX DNA_Crypton 187304 188233 225 + . . scaffold43932 GLEAN mRNA 184217 200506 0.993526 + . ID=CGI_10014122; scaffold801 WUBlastX LINE_RTE-X 273752 273856 49 - . . scaffold801 GLEAN mRNA 264907 277016 0.581073 - . ID=CGI_10024082; scaffold40916 WUBlastX LINE_RTE-X 68217 68879 173 - . . scaffold40916 GLEAN mRNA 64388 73182 0.996236 - . ID=CGI_10004574; scaffold20 WUBlastX LINE_RTE-X 375342 375449 53 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy-Troyk 322908 323018 33 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1-L2 590933 591235 42 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 154576 154956 124 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 10609 11364 257 + . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 172292 172426 32 - . . . . . -1 -1 -1 . . . scaffold39028 WUBlastX LTR_Gypsy-Cigr 2228 2428 25 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_CR1 64210 64257 20 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 526765 527049 67 + . . . . . -1 -1 -1 . . . C14862 WUBlastX LTR_Gypsy 10 264 307 - . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 55197 55670 32 - . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_ERV1 37741 38391 127 - . . . . . -1 -1 -1 . . . scaffold39078 WUBlastX LINE_L1-Tx1 59730 59948 97 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_RTE-X 320748 320879 37 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_RTE-X 322828 323115 53 + . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LTR_Copia 16524 17969 870 - . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LTR_Copia 18396 20765 1475 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Gypsy 65276 68374 1986 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 365686 365988 358 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_hAT 318798 319454 207 + . . scaffold334 GLEAN mRNA 316484 320486 0.508125 + . ID=CGI_10025930; scaffold334 WUBlastX DNA_hAT 319707 320102 32 + . . scaffold334 GLEAN mRNA 316484 320486 0.508125 + . ID=CGI_10025930; scaffold796 WUBlastX RC_Helitron 48870 49961 195 - . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L1 5415 5543 39 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Fot1 649129 649461 66 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold363 WUBlastX LINE_Penelope 356052 356825 148 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_Penelope 356932 357042 26 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LINE_RTE-X 175116 175187 23 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold557 WUBlastX DNA_Maverick 523012 523521 120 - . . scaffold557 GLEAN mRNA 517497 527707 0.973204 - . ID=CGI_10017992; scaffold43538 WUBlastX LINE_CR1 155431 155928 183 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold588 WUBlastX LINE_RTE 409934 410251 39 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Kolobok-IS4 194505 195182 190 + . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX DNA_IS4EU 39445 39837 87 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Kolobok 294610 294786 47 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; C22542 WUBlastX LINE_L1 169 1143 221 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 945920 946063 54 + . . . . . -1 -1 -1 . . . scaffold38510 WUBlastX DNA_Sola 29367 29462 24 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold585 WUBlastX LTR_Pao 15841 16032 170 - . . . . . -1 -1 -1 . . . scaffold35446 WUBlastX LTR_Gypsy 17885 18118 76 - . . scaffold35446 GLEAN mRNA 11417 21109 0.682042 + . ID=CGI_10001510; scaffold35446 WUBlastX LTR_Gypsy 18228 18668 266 - . . scaffold35446 GLEAN mRNA 11417 21109 0.682042 + . ID=CGI_10001510; scaffold1532 WUBlastX LINE_Penelope 185958 186758 210 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_PiggyBac 171735 172028 148 - . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_PiggyBac 173288 173416 59 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1-Tx1 210372 210722 76 - . . . . . -1 -1 -1 . . . C32176 WUBlastX LTR_Pao 8080 8616 82 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_IS4EU 193682 193864 79 + . . . . . -1 -1 -1 . . . scaffold782 WUBlastX LINE_L1-Tx1 119148 120296 140 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Proto2 410428 411051 60 - . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-X 11645 12052 79 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-BovB 184631 184996 126 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-BovB 203560 203664 32 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold1750 WUBlastX LINE_RTE-X 647503 647712 82 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX DNA_Crypton 9327 9908 174 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX DNA_Crypton 10194 10568 52 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold41304 WUBlastX LTR_Ngaro 74046 74147 55 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-BovB 443952 444401 108 + . . . . . -1 -1 -1 . . . C35042 WUBlastX LINE_RTE-X 12693 13556 206 + . . C35042 GLEAN mRNA 1730 15534 0.391528 + . ID=CGI_10001403; scaffold816 WUBlastX LTR_Ngaro 196099 196782 307 - . . . . . -1 -1 -1 . . . scaffold40938 WUBlastX LINE_L1-Tx1 4822 5196 45 - . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1-Tx1 15376 15960 25 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX DNA_Sola 716418 716483 30 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 28855 30069 105 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy-Cigr 284113 284400 235 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy-Cigr 284439 284735 65 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy-Cigr 285034 285282 23 - . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX DNA_hAT-hATw 87349 88425 149 - . . . . . -1 -1 -1 . . . scaffold30314 WUBlastX LINE_RTE-X 2164 3453 185 - . . . . . -1 -1 -1 . . . scaffold40744 WUBlastX DNA_Sola 74543 74857 95 - . . . . . -1 -1 -1 . . . scaffold40744 WUBlastX DNA_Sola 75045 76079 25 - . . . . . -1 -1 -1 . . . scaffold40744 WUBlastX DNA_Sola 76299 76343 24 - . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LTR_DIRS 72799 73317 125 + . . scaffold42584 GLEAN mRNA 72528 80539 0.592742 + . ID=CGI_10007308; scaffold42584 WUBlastX LTR_DIRS 73436 73783 172 + . . scaffold42584 GLEAN mRNA 72528 80539 0.592742 + . ID=CGI_10007308; scaffold43 WUBlastX LTR_Pao 149600 149965 270 - . . . . . -1 -1 -1 . . . scaffold39142 WUBlastX LTR_DIRS 64063 64791 311 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 440261 441829 351 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX DNA_IS4EU 141047 141562 91 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LTR_Gypsy 34430 34618 29 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L1-Tx1 15972 16556 314 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_Penelope 236020 236544 93 + . . . . . -1 -1 -1 . . . C28906 WUBlastX LINE_RTE-X 5035 6000 260 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_RTE-X 271322 271735 176 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 17926 18708 297 + . . . . . -1 -1 -1 . . . scaffold35986 WUBlastX LTR_DIRS 13627 13716 31 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 14383 14598 42 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 14583 15041 104 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 15978 16415 57 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold1521 WUBlastX DNA_TcMar-Tc1 47137 47763 313 + . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-BovB 46712 46960 55 - . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX LINE_RTE-X 97507 98340 282 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-BovB 112360 113091 116 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LINE_RTE-X 132937 134361 272 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Sola 949375 949695 109 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Sola 950979 951638 64 + . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 101971 102387 86 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold413 WUBlastX LINE_L1-Tx1 11815 12069 120 - . . scaffold413 GLEAN mRNA 9716 19114 0.940957 - . ID=CGI_10022791; scaffold626 WUBlastX LINE_L2 286898 287362 192 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L2 287368 287571 87 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LTR_Gypsy 542797 543222 293 - . . . . . -1 -1 -1 . . . C34436 WUBlastX RC_Helitron 9 1196 187 - . . . . . -1 -1 -1 . . . C34436 WUBlastX RC_Helitron 1173 1427 74 - . . . . . -1 -1 -1 . . . C34436 WUBlastX RC_Helitron 1522 1785 74 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 476577 476675 34 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_RTE-BovB 336177 336248 22 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold35070 WUBlastX DNA_PiggyBac 9615 10052 69 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX DNA_Maverick 255434 255988 348 - . . scaffold378 GLEAN mRNA 247048 256613 0.78919 - . ID=CGI_10017643; scaffold481 WUBlastX LINE_L1-Tx1 1239730 1240194 105 + . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LTR_Gypsy 323987 324160 87 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_Harbinger 680097 680465 160 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 681127 681240 116 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 682032 682157 83 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold42 WUBlastX DNA_TcMar-Marin 11638 11850 82 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX DNA_TcMar-Marin 12032 12436 235 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX DNA_TcMar-Marin 45815 46216 232 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX DNA_TcMar-Marin 46486 46770 108 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 153151 153216 41 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 28766 29584 293 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_Gypsy 159367 160149 395 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 514918 515058 28 - . . . . . -1 -1 -1 . . . scaffold1124 WUBlastX LTR_Gypsy 7384 7422 20 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LINE_CR1-L2 401897 402436 26 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1006127 1006900 142 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LINE_L2 153832 155115 250 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 29822 30409 34 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_RTE-X 582906 583274 226 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy-Gmr1 129645 129938 199 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LINE_RTE-X 233689 234399 401 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_IS4EU 296083 296319 44 - . . . . . -1 -1 -1 . . . scaffold1696 WUBlastX DNA_TcMar-Marin 25637 26095 281 - . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX DNA_Maverick 118989 119954 396 + . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 36932 37663 397 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 647465 648718 185 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 692823 693209 40 - . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX LTR_Gypsy 55788 55943 22 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1 141519 141689 22 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold40928 WUBlastX LINE_CR1 40189 40599 230 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1397 WUBlastX LTR_Ngaro 24890 25267 169 + . . scaffold1397 GLEAN mRNA 22041 34038 0.684002 - . ID=CGI_10017113; scaffold406 WUBlastX LTR_Gypsy 134378 134572 120 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold48 WUBlastX LINE_L1 163120 163638 25 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 85015 85368 49 + . . . . . -1 -1 -1 . . . scaffold37278 WUBlastX LTR_DIRS 19447 20253 408 - . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 41034 41513 147 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 1150884 1151483 361 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 645587 645802 33 - . . . . . -1 -1 -1 . . . scaffold37252 WUBlastX DNA_IS4EU 7867 8142 185 - . . . . . -1 -1 -1 . . . scaffold37252 WUBlastX DNA_IS4EU 8100 8606 264 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 258945 259427 88 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 196081 196653 235 + . . . . . -1 -1 -1 . . . C33256 WUBlastX DNA_TcMar-Tc1 6143 6364 135 - . . . . . -1 -1 -1 . . . scaffold230 WUBlastX DNA_hAT-Tip100 129697 129885 44 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 130283 131179 267 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold588 WUBlastX DNA_Harbinger 135001 135852 440 + . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold43064 WUBlastX DNA_Harbinger 49556 50407 440 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LTR_DIRS 161830 162807 429 - . . . . . -1 -1 -1 . . . scaffold39582 WUBlastX LINE_L1-Tx1 60931 61380 48 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX LTR_Gypsy 387184 387819 335 + . . . . . -1 -1 -1 . . . scaffold415 WUBlastX LTR_Gypsy 73896 74165 72 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_CR1 108553 109293 525 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX RC_Helitron 356243 357307 196 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 1114130 1114249 47 - . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 27515 27919 293 + . . . . . -1 -1 -1 . . . scaffold35870 WUBlastX LINE_L1-Tx1 12485 13114 122 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 643129 643575 76 - . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 80604 80963 86 + . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 81044 81352 152 + . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 81387 81971 281 + . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 82003 82263 34 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2 422973 423302 71 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LTR_Gypsy-Cigr 16219 16599 391 + . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LTR_Ngaro 48859 49191 149 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_Maverick 560639 561718 546 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 476568 476720 21 - . . . . . -1 -1 -1 . . . scaffold39526 WUBlastX LTR_Ngaro 61916 62446 72 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_Maverick 182908 183237 258 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_CR1-L2 288745 289158 114 + . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LINE_R2-Hero 328224 328709 268 - . . . . . -1 -1 -1 . . . scaffold36862 WUBlastX LTR_DIRS 37142 37768 113 + . . scaffold36862 GLEAN mRNA 37040 37771 1 + . ID=CGI_10002162; scaffold36862 WUBlastX LTR_DIRS 37722 38585 415 + . . scaffold36862 GLEAN mRNA 37040 37771 1 + . ID=CGI_10002162; scaffold141 WUBlastX LTR_Gypsy 149280 149348 29 + . . . . . -1 -1 -1 . . . scaffold372 WUBlastX LINE_L1-Tx1 12076 12432 203 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 394252 394341 92 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_En-Spm 335362 335946 405 + . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-BovB 16785 17045 120 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-BovB 17083 17190 22 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-BovB 17222 18136 441 - . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LINE_L2 109823 110206 244 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LINE_L1-Tx1 149574 150410 588 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 227743 227868 20 - . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LTR_DIRS 2874 3752 629 + . . scaffold43696 GLEAN mRNA 2631 16978 0.0834374 + . ID=CGI_10011797; scaffold43136 WUBlastX RC_Helitron 37174 37530 34 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_L1 29623 29676 45 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1067771 1068895 612 - . . scaffold1024 GLEAN mRNA 1067411 1070428 0.977799 - . ID=CGI_10028562; scaffold37092 WUBlastX LINE_L1-Tx1 28982 29965 300 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Pao 1494003 1494368 116 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_RTE-X 598017 599462 477 + . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_RTE-X 48106 48777 318 + . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Ngaro 78276 78746 142 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX DNA_Academ 179864 181105 617 + . . scaffold1889 GLEAN mRNA 168717 180210 0.977984 - . ID=CGI_10019607; scaffold1889 WUBlastX DNA_Academ 181093 181200 25 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Gypsy-Cigr 520305 520547 30 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Pao 753770 754081 226 - . . . . . -1 -1 -1 . . . scaffold139 WUBlastX DNA_hAT-Tip100 45544 47088 597 - . . . . . -1 -1 -1 . . . scaffold139 WUBlastX DNA_hAT-Tip100 47419 47694 122 - . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX DNA_Helitron 12195 12410 66 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Maverick 1363489 1364763 680 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 12474 12719 56 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 12959 13225 93 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 13198 13380 93 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Ngaro 167753 168076 176 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy-Cigr 567158 568204 570 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold266 WUBlastX LTR_Gypsy 288053 288901 629 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-BovB 113602 113961 83 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_RTE-X 307954 308856 71 + . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy-Cigr 96786 98054 712 + . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold541 WUBlastX LTR_Gypsy 600251 600379 100 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 19644 20459 147 - . . scaffold143 GLEAN mRNA 16958 23785 0.985197 + . ID=CGI_10010006; scaffold1707 WUBlastX LINE_RTE-X 230519 230896 91 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 27767 29221 325 - . . . . . -1 -1 -1 . . . scaffold38980 WUBlastX LTR_Copia 62413 63858 862 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_CR1-L2 44032 44136 43 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 57789 58088 51 - . . . . . -1 -1 -1 . . . scaffold1679 WUBlastX LTR_Gypsy 28792 32187 652 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold1024 WUBlastX LTR_Gypsy 885832 887229 831 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_Gypsy 595957 597090 880 - . . . . . -1 -1 -1 . . . scaffold36758 WUBlastX LINE_L1 2 1915 698 + . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LTR_Gypsy-Cigr 98022 99272 756 - . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LTR_Gypsy-Cigr 99358 99501 141 - . . . . . -1 -1 -1 . . . scaffold1281 WUBlastX LTR_DIRS 7932 8060 79 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 8243 8944 394 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 9807 10085 193 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold352 WUBlastX LTR_Gypsy 153599 154411 69 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold41732 WUBlastX LINE_RTE-X 57329 57901 169 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold41732 WUBlastX LINE_RTE-X 58448 58996 350 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; C35168 WUBlastX LTR_Gypsy 22746 22916 53 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 259237 259848 449 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 713365 714594 931 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_IS4EU 27301 28836 869 - . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold986 WUBlastX LINE_RTE-X 100682 101320 140 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Copia 556749 556955 34 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold31 WUBlastX LINE_L2 230849 231166 49 - . . . . . -1 -1 -1 . . . scaffold1652 WUBlastX LINE_CR1 225573 225779 25 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold1575 WUBlastX LINE_Jockey 37238 37789 39 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Ngaro 455716 455841 71 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_Crypton 1185994 1186233 26 + . . . . . -1 -1 -1 . . . C29010 WUBlastX LTR_DIRS 4930 5199 63 + . . . . . -1 -1 -1 . . . scaffold1401 WUBlastX LINE_L2 6296 6634 59 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold42740 WUBlastX DNA_Kolobok-IS4 8875 9048 29 - . . . . . -1 -1 -1 . . . scaffold42740 WUBlastX DNA_Kolobok-IS4 9469 9594 29 - . . . . . -1 -1 -1 . . . scaffold1798 WUBlastX DNA_Kolobok-IS4 29684 29857 29 - . . . . . -1 -1 -1 . . . scaffold1798 WUBlastX DNA_Kolobok-IS4 30294 30419 29 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX DNA_IS4EU 103428 103619 61 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX RC_Helitron 272511 272663 22 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Gypsy 121318 121902 33 + . . . . . -1 -1 -1 . . . scaffold37892 WUBlastX LTR_Gypsy 12397 12651 76 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_Jockey 535710 536219 21 + . . scaffold4 GLEAN mRNA 536172 536474 1 + . ID=CGI_10021182; scaffold5 WUBlastX DNA_TcMar-ISRm1 6175 6543 61 - . . . . . -1 -1 -1 . . . scaffold35432 WUBlastX LINE_L1-Tx1 240 317 21 - . . . . . -1 -1 -1 . . . scaffold34236 WUBlastX LINE_L1-Tx1 10557 11030 43 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_L1 388202 388363 29 + . . . . . -1 -1 -1 . . . scaffold38216 WUBlastX LINE_L1 51628 51726 20 + . . . . . -1 -1 -1 . . . scaffold993 WUBlastX LTR_Ngaro 87430 87705 31 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 763336 763836 21 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_Penelope 665219 665704 39 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX DNA_P 55920 56039 77 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold808 WUBlastX DNA_TcMar-Marin 269835 269882 29 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_RTE-X 226235 226450 52 - . . scaffold338 GLEAN mRNA 225763 251936 1 + . ID=CGI_10011188; scaffold1213 WUBlastX LINE_RTE-X 52040 52255 60 + . . scaffold1213 GLEAN mRNA 37787 69926 0.920174 - . ID=CGI_10027426; scaffold610 WUBlastX LINE_RTE-X 598022 598234 48 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold557 WUBlastX LINE_RTE-X 170433 170699 53 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 616877 616939 21 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 613469 613705 55 - . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_RTE-X 247350 247667 52 - . . scaffold421 GLEAN mRNA 232502 254015 0.999281 - . ID=CGI_10012158; scaffold695 WUBlastX LINE_RTE-BovB 215099 215293 71 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-BovB 570106 570582 28 + . . scaffold337 GLEAN mRNA 562237 577539 1 - . ID=CGI_10028070; scaffold39064 WUBlastX LINE_R1 61481 61678 22 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 592896 593006 73 - . . . . . -1 -1 -1 . . . scaffold36020 WUBlastX LINE_RTE-X 29753 29980 87 + . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Ngaro 48785 49099 30 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LTR_Ngaro 24414 24935 46 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Ngaro 380978 381190 24 + . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LTR_DIRS 142929 143192 24 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 143846 143968 27 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold1358 WUBlastX DNA_Harbinger 205685 206158 60 + . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_RTE-X 469210 469395 86 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_Sola 118628 119041 34 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_TcMar-Tc2 1863772 1863942 57 + . . scaffold22 GLEAN mRNA 1863760 1864161 0.544455 + . ID=CGI_10028938; scaffold40822 WUBlastX DNA_TcMar-Tc1 36172 36261 20 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX DNA_TcMar-Tc1 37049 37144 31 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LTR_Gypsy-Troyk 1112 1438 72 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_L1-Tx1 657112 657237 25 - . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX LINE_L2 214646 214963 68 + . . scaffold43676 GLEAN mRNA 211597 216385 0.756935 + . ID=CGI_10011734; scaffold40586 WUBlastX LINE_CR1 35135 35206 22 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_CR1-L2 68628 68876 74 + . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_CR1-L2 54294 54470 69 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Copia 848437 848724 25 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX DNA_Chapaev 34730 35146 64 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX DNA_Chapaev 377621 378037 64 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_RTE-BovB 43808 43948 81 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy 640629 641348 33 - . . . . . -1 -1 -1 . . . scaffold38780 WUBlastX LTR_Gypsy 13364 13633 27 + . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold933 WUBlastX LTR_Gypsy 133960 134310 55 - . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-BovB 41327 41500 36 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy 420219 420347 76 - . . scaffold1108 GLEAN mRNA 412229 432514 0.990447 + . ID=CGI_10021980; scaffold35694 WUBlastX LINE_R2-Hero 18712 18960 41 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX RC_Helitron 121827 121994 25 + . . . . . -1 -1 -1 . . . scaffold42166 WUBlastX LINE_I 10573 10650 27 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_IS4EU 189112 189426 48 - . . . . . -1 -1 -1 . . . scaffold34742 WUBlastX LINE_Penelope 12431 12679 30 + . . . . . -1 -1 -1 . . . scaffold193 WUBlastX DNA_P 97256 97471 20 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_hAT-Tip100 567680 567940 33 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_Penelope 96736 96900 72 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold501 WUBlastX LINE_L2 1285874 1286086 82 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX DNA_TcMar-Marin 409525 409740 63 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_L1 517674 517880 26 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold168 WUBlastX LINE_L1 752318 752824 53 - . . scaffold168 GLEAN mRNA 746142 765920 0.683894 - . ID=CGI_10025611; scaffold456 WUBlastX LINE_L1 97018 97737 34 - . . . . . -1 -1 -1 . . . scaffold42166 WUBlastX LINE_RTE-X 58537 58695 69 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-BovB 905871 905966 35 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LINE_RTE-BovB 62287 62421 62 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1241089 1241241 38 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-X 197780 198103 96 - . . scaffold269 GLEAN mRNA 192453 200699 0.999993 + . ID=CGI_10018996; scaffold1827 WUBlastX LTR_DIRS 179135 179251 81 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX DNA_MuDR 514956 515306 77 - . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_L1 235540 235617 20 - . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_L1 89437 89643 56 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_CR1-L2 927871 928071 23 + . . scaffold469 GLEAN mRNA 925100 941633 0.564574 + . ID=CGI_10024703; scaffold100 WUBlastX LINE_L2-Hydra 107496 108062 65 + . . . . . -1 -1 -1 . . . C35042 WUBlastX LINE_CR1-L2 13737 13847 55 - . . C35042 GLEAN mRNA 1730 15534 0.391528 + . ID=CGI_10001403; scaffold38458 WUBlastX LINE_L2 55758 56003 29 + . . scaffold38458 GLEAN mRNA 38002 56000 0.84332 + . ID=CGI_10002784; scaffold163 WUBlastX LTR_Gypsy 476425 476997 38 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 477731 477931 41 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold268 WUBlastX LINE_L2 54679 54915 28 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Ngaro 332030 332341 75 - . . . . . -1 -1 -1 . . . scaffold1115 WUBlastX LTR_Ngaro 120993 121256 95 + . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LTR_Ngaro 98009 98176 90 - . . . . . -1 -1 -1 . . . scaffold33832 WUBlastX DNA_IS4EU 1080 1376 78 - . . . . . -1 -1 -1 . . . scaffold252 WUBlastX DNA_IS4EU 229743 230003 60 - . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_R2-Hero 123207 123563 75 + . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold922 WUBlastX DNA_Harbinger 93466 93876 71 - . . scaffold922 GLEAN mRNA 65021 94381 0.690826 - . ID=CGI_10005662; scaffold115 WUBlastX DNA_hAT-Tip100 129382 129834 79 + . . scaffold115 GLEAN mRNA 126783 131612 1 - . ID=CGI_10021378; scaffold43 WUBlastX LTR_Gypsy 488043 488648 60 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 56811 57152 95 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LINE_L1 430024 430209 66 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LINE_L1-Tx1 204780 205073 51 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold425 WUBlastX LINE_L1-Tx1 514841 515119 84 - . . scaffold425 GLEAN mRNA 510364 519174 0.533682 - . ID=CGI_10025986; scaffold1352 WUBlastX LINE_L1 136454 136846 36 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1 1111798 1111884 34 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_L1 233183 233623 112 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold36510 WUBlastX LINE_Penelope 9178 9753 29 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_Penelope 16550 16939 65 - . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX LINE_RTE-X 97030 97158 34 - . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX LINE_RTE-X 97166 97312 61 - . . . . . -1 -1 -1 . . . scaffold38750 WUBlastX LINE_RTE-X 4462 4677 82 + . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold395 WUBlastX LINE_RTE-X 333936 334175 45 + . . scaffold395 GLEAN mRNA 321463 334797 0.32577 + . ID=CGI_10013986; scaffold57 WUBlastX LINE_RTE-X 192277 192561 65 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold1670 WUBlastX LINE_RTE-X 339303 339560 66 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L1-Tx1 548185 548358 89 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold40994 WUBlastX LINE_L1-Tx1 101384 101746 42 + . . . . . -1 -1 -1 . . . scaffold39536 WUBlastX LINE_L1-Tx1 5703 6113 45 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX DNA_TcMar-Marin 197460 197582 66 - . . . . . -1 -1 -1 . . . scaffold533 WUBlastX DNA_TcMar-Tc1 25144 25263 34 + . . . . . -1 -1 -1 . . . scaffold382 WUBlastX LINE_CR1-L2 1282 1707 65 - . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_L2 259399 259725 73 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 137087 137812 73 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LTR_Gypsy 40732 40887 103 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1 335828 336631 44 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Harbinger 250258 250635 70 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Harbinger 456934 457143 76 - . . . . . -1 -1 -1 . . . scaffold34098 WUBlastX DNA_Harbinger 5234 5443 77 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_Kolobok-IS4 597647 597964 107 + . . . . . -1 -1 -1 . . . C26402 WUBlastX LINE_L1-Tx1 3090 3269 47 + . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_IS4EU 157929 158030 30 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Maverick 211239 211352 22 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_RTE-X 358968 359342 49 + . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LINE_RTE-X 224020 224229 74 + . . scaffold522 GLEAN mRNA 220239 233086 0.999661 + . ID=CGI_10020320; scaffold42516 WUBlastX LINE_RTE-X 61740 61931 39 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX DNA_TcMar-Marin 232163 232447 27 - . . . . . -1 -1 -1 . . . scaffold866 WUBlastX DNA_Sola 91547 91723 109 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold1056 WUBlastX LTR_DIRS 143317 143361 30 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Tc1 744260 744442 22 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_L1-Tx1 28376 28690 23 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX DNA_hAT-Tip100 231444 231710 80 + . . scaffold967 GLEAN mRNA 210935 232101 0.931586 + . ID=CGI_10015461; scaffold9 WUBlastX LINE_CR1-L2 81222 81449 57 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 740530 740820 74 + . . . . . -1 -1 -1 . . . scaffold41008 WUBlastX DNA_Crypton 73840 74139 103 + . . . . . -1 -1 -1 . . . scaffold36936 WUBlastX DNA_Crypton 15619 15975 107 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold152 WUBlastX LINE_R2-Hero 247812 248159 119 - . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX DNA_Harbinger 164925 165128 26 - . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX DNA_Harbinger 165475 165843 46 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Gypsy 511860 512039 77 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold1558 WUBlastX LINE_L1-Tx1 41366 41689 22 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold1525 WUBlastX DNA_Kolobok 239811 239951 89 - . . . . . -1 -1 -1 . . . C28090 WUBlastX LINE_L1 670 1383 20 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_L1 194141 194602 50 - . . . . . -1 -1 -1 . . . C34408 WUBlastX LINE_L1-Tx1 17980 18480 87 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_TcMar-Marin 19969 20067 50 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_Gypsy 15846 15950 84 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold772 WUBlastX DNA_PiggyBac 282127 282486 47 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold1699 WUBlastX LINE_RTE-X 17707 17958 58 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_RTE-X 12599 12850 111 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_L1-Tx1 168103 168534 80 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX DNA_Zator 5627 5731 28 + . . scaffold40638 GLEAN mRNA 3072 18093 0.976327 + . ID=CGI_10004284; scaffold40638 WUBlastX DNA_Zator 5868 6071 77 + . . scaffold40638 GLEAN mRNA 3072 18093 0.976327 + . ID=CGI_10004284; scaffold1262 WUBlastX LINE_CR1 112893 113147 36 + . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LINE_L1 111354 112319 69 + . . scaffold1780 GLEAN mRNA 107008 115035 0.543 - . ID=CGI_10014549; scaffold77 WUBlastX LTR_Ngaro 697343 697585 71 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Ngaro 109607 109831 81 - . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold993 WUBlastX LTR_Ngaro 88930 89199 97 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_DIRS 14953 15678 50 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Gypsy 434114 434371 127 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_Harbinger 717184 717432 69 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX DNA_IS4EU 314429 314515 39 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX DNA_IS4EU 315319 315519 31 - . . . . . -1 -1 -1 . . . scaffold38580 WUBlastX DNA_TcMar-Marin 53515 53766 113 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_Penelope 320156 320560 73 + . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LINE_L1 43550 43822 29 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1 671435 672244 54 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1 216274 217083 54 - . . scaffold698 GLEAN mRNA 215942 226142 0.793097 + . ID=CGI_10020736; scaffold271 WUBlastX LINE_L1 470374 470874 35 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold40822 WUBlastX LINE_RTE-BovB 34556 34720 129 + . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_Proto2 95316 95414 25 - . . . . . -1 -1 -1 . . . scaffold1828 WUBlastX LINE_RTE-BovB 2993 3061 23 + . . . . . -1 -1 -1 . . . scaffold1828 WUBlastX LINE_RTE-BovB 3036 3293 110 + . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LINE_RTE-X 109821 110237 55 + . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold43038 WUBlastX LINE_CR1 15 407 65 + . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LTR_Gypsy 68048 68221 148 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 429923 429997 22 - . . . . . -1 -1 -1 . . . scaffold1404 WUBlastX LTR_Ngaro 154511 154789 102 + . . . . . -1 -1 -1 . . . scaffold40828 WUBlastX LTR_Gypsy 56941 57114 61 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold1894 WUBlastX LINE_L1 41620 41796 45 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold150 WUBlastX DNA_Kolobok 1581197 1581439 118 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold606 WUBlastX LINE_Penelope 207337 207615 97 - . . scaffold606 GLEAN mRNA 205072 212919 0.983743 - . ID=CGI_10012948; scaffold19568 WUBlastX LINE_RTE-BovB 523 813 53 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 209390 209545 53 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-X 558728 559201 71 + . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX DNA_Academ 30947 31525 118 - . . . . . -1 -1 -1 . . . scaffold32550 WUBlastX LTR_Ngaro 1036 1152 73 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX DNA_En-Spm 415282 415608 79 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold534 WUBlastX LTR_Gypsy 47206 47535 149 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 801135 801506 44 + . . . . . -1 -1 -1 . . . scaffold1596 WUBlastX DNA_hAT-Ac 3557 3820 83 + . . . . . -1 -1 -1 . . . scaffold41034 WUBlastX LTR_DIRS 58754 58849 53 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold1093 WUBlastX LINE_Penelope 405098 405415 65 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold42022 WUBlastX LINE_L2 33701 34054 106 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold896 WUBlastX LINE_RTE-X 70537 70668 36 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LINE_RTE-X 297233 297646 114 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_DIRS 649597 649971 96 + . . scaffold280 GLEAN mRNA 645758 661781 0.996424 - . ID=CGI_10024601; scaffold754 WUBlastX DNA_IS4EU 140686 140859 45 + . . scaffold754 GLEAN mRNA 139769 141980 1 - . ID=CGI_10014067; scaffold366 WUBlastX DNA_Harbinger 117429 117698 107 + . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold1754 WUBlastX DNA_TcMar-Fot1 71791 72120 128 - . . . . . -1 -1 -1 . . . scaffold35466 WUBlastX DNA_TcMar-Tc1 17903 18016 33 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L1 891259 891732 140 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold531 WUBlastX LINE_RTE-X 160385 160627 158 - . . . . . -1 -1 -1 . . . scaffold436 WUBlastX LINE_RTE-BovB 5863 5946 27 + . . . . . -1 -1 -1 . . . C26040 WUBlastX LINE_RTE-X 2010 2591 104 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Sola 88670 89077 62 + . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_RTE-X 91640 92119 57 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_RTE-X 962 1399 80 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_RTE-X 13794 14120 24 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_RTE-X 14685 14822 35 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LINE_L1-Tx1 114924 115082 119 + . . . . . -1 -1 -1 . . . scaffold399 WUBlastX DNA_TcMar-Tc1 178583 178939 91 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX DNA_TcMar-Tc1 497988 498155 46 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LTR_Pao 358 750 140 + . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_L2 631921 632226 170 + . . . . . -1 -1 -1 . . . scaffold37844 WUBlastX LINE_CR1 35973 36821 83 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX DNA_hAT-hATw 150674 151003 52 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX DNA_hAT-hATw 152035 152259 34 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX DNA_hAT-Tip100 102400 102711 100 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold1138 WUBlastX RC_Helitron 194269 195132 120 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1 571406 571546 60 + . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LINE_Penelope 12096 12263 32 + . . scaffold1323 GLEAN mRNA 5100 53779 0.182338 + . ID=CGI_10009080; scaffold37880 WUBlastX DNA_Maverick 30019 30069 30 - . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX DNA_PiggyBac 196748 196930 77 + . . . . . -1 -1 -1 . . . scaffold1652 WUBlastX LINE_RTE-X 244099 244314 98 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L1-Tx1 5022 5177 27 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 34459 34662 63 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy 408711 409493 362 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Sola 433950 434513 306 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Sola 435482 436039 230 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LTR_Gypsy 519723 520610 48 - . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 84473 84769 54 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 85680 85841 70 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 85807 86151 313 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 86135 86569 296 + . . . . . -1 -1 -1 . . . C29558 WUBlastX LTR_Gypsy 4979 5071 28 - . . . . . -1 -1 -1 . . . C29558 WUBlastX LTR_Gypsy 6412 6567 153 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_L2 124408 124893 107 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_L2 124896 126170 564 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_L2 126124 126426 221 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_CR1 97946 98800 682 + . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_CR1 47602 47727 36 - . . . . . -1 -1 -1 . . . scaffold35558 WUBlastX LINE_L2 14802 15302 123 + . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_CR1 67392 67874 117 + . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LTR_Gypsy-Cigr 454080 454526 149 + . . scaffold547 GLEAN mRNA 453649 455262 0.872777 + . ID=CGI_10018858; scaffold1599 WUBlastX LTR_Gypsy 955432 956025 143 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_DIRS 469593 469817 48 + . . . . . -1 -1 -1 . . . scaffold40514 WUBlastX DNA_Crypton 66724 67098 65 + . . . . . -1 -1 -1 . . . scaffold40514 WUBlastX DNA_Crypton 67498 67698 25 + . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 31939 32229 84 + . . scaffold40282 GLEAN mRNA 26181 34807 1 + . ID=CGI_10004001; scaffold36940 WUBlastX DNA_Harbinger 13198 13410 151 + . . . . . -1 -1 -1 . . . scaffold948 WUBlastX DNA_IS4EU 107507 107719 69 + . . . . . -1 -1 -1 . . . scaffold948 WUBlastX DNA_IS4EU 107727 107843 20 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX DNA_IS4EU 186856 187200 124 + . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold780 WUBlastX LTR_Ngaro 965759 966301 125 + . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold1164 WUBlastX LINE_L1 77095 77190 22 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 715357 715860 75 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 715847 715912 35 + . . . . . -1 -1 -1 . . . C11640 WUBlastX LTR_Ngaro 3 176 148 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LTR_Ngaro 53966 54598 105 + . . . . . -1 -1 -1 . . . scaffold770 WUBlastX LINE_L1-Tx1 138538 138924 136 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_L2 494013 494954 517 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_L2 494983 495906 478 + . . . . . -1 -1 -1 . . . C31762 WUBlastX LINE_CR1 8625 10172 1009 + . . . . . -1 -1 -1 . . . scaffold37758 WUBlastX DNA_En-Spm 3683 4021 190 + . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_L1-Tx1 131190 132269 730 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_Jockey 360810 360938 64 - . . . . . -1 -1 -1 . . . scaffold43494 WUBlastX LTR_Ngaro 62546 63232 123 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_En-Spm 1078334 1079101 55 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX DNA_TcMar-Marin 460811 461488 140 + . . scaffold1650 GLEAN mRNA 454767 463877 0.937811 + . ID=CGI_10017782; scaffold1021 WUBlastX DNA_Kolobok-IS4 277604 277771 54 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX DNA_IS4EU 220309 220662 76 - . . . . . -1 -1 -1 . . . scaffold1742 WUBlastX DNA_Harbinger 140366 141202 79 - . . scaffold1742 GLEAN mRNA 139017 145553 0.542354 - . ID=CGI_10010934; scaffold721 WUBlastX DNA_Harbinger 26684 26941 65 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Harbinger 27336 27425 71 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1 198752 198955 87 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 296449 297045 99 + . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX DNA_TcMar-Tc1 58553 59008 161 + . . . . . -1 -1 -1 . . . scaffold37148 WUBlastX LINE_RTE-BovB 29599 29736 32 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 29713 29874 27 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 28044 28175 21 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 28857 29402 38 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold419 WUBlastX LINE_RTE-X 807522 808292 74 + . . scaffold419 GLEAN mRNA 806382 811629 0.999675 - . ID=CGI_10028368; scaffold41776 WUBlastX LINE_RTE-X 14872 15081 70 + . . . . . -1 -1 -1 . . . scaffold42062 WUBlastX LINE_RTE-BovB 112319 112492 179 + . . . . . -1 -1 -1 . . . scaffold40820 WUBlastX DNA_Sola 99931 100491 139 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 27068 27232 46 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_L1-Tx1 97134 99020 794 - . . . . . -1 -1 -1 . . . scaffold43278 WUBlastX LTR_Pao 234574 236583 751 - . . . . . -1 -1 -1 . . . scaffold39088 WUBlastX DNA_TcMar-Tc1 41238 41435 66 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold39014 WUBlastX LTR_Gypsy? 6775 7818 25 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX DNA_Harbinger 62358 62867 125 - . . . . . -1 -1 -1 . . . C25404 WUBlastX DNA_IS4EU 27 1079 100 - . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LINE_L1-Tx1 136466 137089 129 - . . scaffold647 GLEAN mRNA 124845 138037 0.631256 + . ID=CGI_10006931; scaffold128 WUBlastX DNA_PiggyBac 232511 232732 41 + . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_RTE-X 236502 236729 32 - . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_RTE-X 236690 236968 28 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 1568265 1568558 61 - . . . . . -1 -1 -1 . . . scaffold1549 WUBlastX LINE_L1-Tx1 8336 8719 33 + . . scaffold1549 GLEAN mRNA 4210 11718 0.999526 - . ID=CGI_10002845; scaffold683 WUBlastX LTR_DIRS 208968 210335 879 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LTR_DIRS 210312 210986 284 - . . . . . -1 -1 -1 . . . scaffold38162 WUBlastX LTR_Gypsy 33257 34609 595 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX RC_Helitron 223598 223822 30 + . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX DNA_Academ 30537 30902 118 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX DNA_TcMar-Pogo 738935 739033 65 + . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold514 WUBlastX LTR_Pao 2837 3121 159 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_CR1 870233 870418 20 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX RC_Helitron 271203 271598 71 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 231437 232183 141 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1 318388 318480 56 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_L1 102339 102602 57 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold588 WUBlastX LINE_Penelope 146429 146662 66 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold113 WUBlastX LINE_RTE-X 592777 593199 123 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 70020 70340 53 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_Proto2 448266 449108 87 - . . . . . -1 -1 -1 . . . C28802 WUBlastX DNA_Sola 4718 5371 127 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 1344824 1347295 1052 - . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LINE_L1-Tx1 32462 33733 803 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LINE_L1-Tx1 33696 34595 333 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LINE_L1 151377 151646 22 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LTR_Gypsy-Cigr 781158 781850 170 - . . scaffold271 GLEAN mRNA 780567 782249 0.988234 - . ID=CGI_10024495; scaffold115 WUBlastX LTR_DIRS 359454 359573 37 - . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX DNA_hAT-Tip100 38445 38954 67 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 796271 796354 20 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_DIRS 254691 255503 189 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Ngaro 1245424 1245474 31 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-X 1058443 1058673 110 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-X 1058691 1058963 25 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-X 1058987 1059058 21 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 672560 672613 24 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 162632 164113 504 + . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LTR_Gypsy-Cigr 30340 32166 866 + . . . . . -1 -1 -1 . . . scaffold38884 WUBlastX LTR_DIRS 45866 46876 220 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold337 WUBlastX LINE_CR1 440422 441435 149 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Ngaro 420079 420363 36 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L2 384183 384956 110 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy 363100 363534 164 - . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_hAT-Tip100 174223 174330 49 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_Kolobok-IS4 209802 210164 141 - . . scaffold1397 GLEAN mRNA 206907 222276 0.644927 - . ID=CGI_10017120; scaffold1397 WUBlastX DNA_Kolobok-IS4 210130 210384 44 - . . scaffold1397 GLEAN mRNA 206907 222276 0.644927 - . ID=CGI_10017120; C34116 WUBlastX DNA_IS4EU 15885 16388 186 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX DNA_Sola 20687 20848 25 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX DNA_hAT-Tip100 109138 109902 93 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold100 WUBlastX LTR_Gypsy 827852 827887 34 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 827878 828750 580 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Gypsy 666972 670733 1478 + . . scaffold1703 GLEAN mRNA 642760 671813 0.998976 - . ID=CGI_10023072; scaffold39500 WUBlastX LTR_Gypsy-Cigr 20320 22122 826 - . . . . . -1 -1 -1 . . . scaffold1375 WUBlastX LINE_CR1 16795 17838 745 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Copia 336889 337581 199 + . . . . . -1 -1 -1 . . . C29882 WUBlastX LTR_Gypsy 2370 2825 154 + . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX LTR_Ngaro 43139 44095 111 - . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_TcMar-Fot1 87810 87935 32 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_Penelope 37281 37997 118 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 20721 22184 975 + . . . . . -1 -1 -1 . . . scaffold1538 WUBlastX LTR_Gypsy 38624 41020 1434 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_CR1 52047 52328 210 + . . scaffold753 GLEAN mRNA 36571 68340 0.958809 + . ID=CGI_10014195; scaffold36872 WUBlastX LTR_Gypsy 11319 11465 54 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LTR_Ngaro 139464 140111 131 - . . . . . -1 -1 -1 . . . C25366 WUBlastX LTR_Ngaro 906 1283 176 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 526003 526296 264 - . . . . . -1 -1 -1 . . . C33776 WUBlastX LTR_Gypsy 28 1224 224 + . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LINE_Penelope 36985 37938 146 + . . scaffold680 GLEAN mRNA 28858 40321 0.544852 - . ID=CGI_10003337; scaffold885 WUBlastX DNA_Kolobok 12557 12691 23 + . . scaffold885 GLEAN mRNA 11627 19636 0.352613 - . ID=CGI_10025184; scaffold1 WUBlastX LINE_L1 136593 136808 104 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_L1 136832 137251 105 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_RTE-X 142090 142629 106 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_L1-Tx1 42617 43471 178 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_TcMar-Tc1 1050124 1050465 145 - . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX LINE_L1-Tx1 35767 36588 84 - . . scaffold1442 GLEAN mRNA 28034 38698 1 - . ID=CGI_10003584; scaffold1442 WUBlastX LINE_L1-Tx1 36602 38143 928 - . . scaffold1442 GLEAN mRNA 28034 38698 1 - . ID=CGI_10003584; scaffold1442 WUBlastX LINE_L1-Tx1 38142 38627 293 - . . scaffold1442 GLEAN mRNA 28034 38698 1 - . ID=CGI_10003584; scaffold448 WUBlastX LTR_Gypsy 174557 174748 207 + . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LINE_L1-Tx1 17935 21144 1342 + . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Maverick 62629 62763 48 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Maverick 65227 65646 83 - . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LINE_CR1 58972 59463 166 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1 732761 732868 25 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX RC_Helitron 60465 61106 213 - . . . . . -1 -1 -1 . . . scaffold42788 WUBlastX LINE_L1-Tx1 105912 106076 43 + . . scaffold42788 GLEAN mRNA 99407 151977 0.339426 + . ID=CGI_10007755; scaffold42788 WUBlastX LINE_L1-Tx1 106079 106843 60 + . . scaffold42788 GLEAN mRNA 99407 151977 0.339426 + . ID=CGI_10007755; scaffold123 WUBlastX DNA_TcMar-Tc1 57868 57942 25 + . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_RTE-X 92270 92707 104 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold1732 WUBlastX LTR_Gypsy-Cigr 54387 56045 935 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_hAT 1356234 1356404 82 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_hAT 1356673 1356909 56 + . . . . . -1 -1 -1 . . . scaffold37432 WUBlastX LTR_Pao 25 450 247 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Pao 86227 86535 230 - . . scaffold248 GLEAN mRNA 82023 112174 0.53738 + . ID=CGI_10017220; scaffold1423 WUBlastX LTR_Ngaro 1060969 1061370 144 + . . . . . -1 -1 -1 . . . scaffold141 WUBlastX DNA_Harbinger 127637 127750 100 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX DNA_Harbinger 127978 128349 118 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy 193068 193325 39 + . . . . . -1 -1 -1 . . . scaffold41772 WUBlastX LTR_Gypsy 100004 100495 83 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX DNA_Kolobok 467768 467989 42 + . . scaffold1016 GLEAN mRNA 467114 469577 0.532282 + . ID=CGI_10016902; scaffold1016 WUBlastX DNA_Kolobok 468113 468271 37 + . . scaffold1016 GLEAN mRNA 467114 469577 0.532282 + . ID=CGI_10016902; scaffold1016 WUBlastX DNA_Kolobok 468273 468362 33 + . . scaffold1016 GLEAN mRNA 467114 469577 0.532282 + . ID=CGI_10016902; scaffold1016 WUBlastX DNA_Kolobok 468926 469234 92 + . . scaffold1016 GLEAN mRNA 467114 469577 0.532282 + . ID=CGI_10016902; scaffold43878 WUBlastX LINE_RTE-X 69662 69850 93 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 188308 188481 27 + . . . . . -1 -1 -1 . . . scaffold37790 WUBlastX DNA_TcMar-Tc1 13155 13403 83 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_TcMar-Pogo 409933 410172 78 - . . . . . -1 -1 -1 . . . C23114 WUBlastX LTR_Gypsy 6 2093 1878 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Gypsy 78259 78555 129 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 278327 280021 673 - . . . . . -1 -1 -1 . . . C28006 WUBlastX LINE_L2 3566 3862 215 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_L2 123486 124016 193 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L2 357512 358393 153 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Gypsy 178728 179291 149 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Ngaro 114400 114690 144 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Ngaro 263570 263818 167 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_L2 75220 75459 50 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_Harbinger 311310 311591 112 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_Harbinger 311779 312066 138 - . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX DNA_Harbinger 120425 120598 45 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 143798 143920 39 - . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_L1-Tx1 109002 109889 72 - . . scaffold1475 GLEAN mRNA 105013 111468 0.650413 - . ID=CGI_10005953; scaffold1772 WUBlastX DNA_TcMar-Marin 49508 50032 161 - . . . . . -1 -1 -1 . . . scaffold37680 WUBlastX LINE_RTE-X 5 415 147 - . . . . . -1 -1 -1 . . . scaffold40744 WUBlastX DNA_Sola 75234 75842 84 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Ngaro 466436 466945 88 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX RC_Helitron 133043 133234 35 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX DNA_Kolobok-IS4 412162 412521 228 + . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LINE_L2 706390 706455 20 - . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1 110185 110502 60 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX DNA_hAT 781564 781680 52 + . . scaffold226 GLEAN mRNA 780022 794397 0.995567 + . ID=CGI_10025375; scaffold1448 WUBlastX LTR_Ngaro 29301 29786 116 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold730 WUBlastX LTR_Gypsy 25602 25778 23 - . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX DNA_Helitron 55964 56632 268 - . . scaffold1454 GLEAN mRNA 52591 59447 0.570116 - . ID=CGI_10004313; scaffold248 WUBlastX LTR_Gypsy 113948 114451 234 - . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LTR_Gypsy 58360 58923 51 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_L1 705734 706492 172 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_RTE-BovB 988535 988915 231 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX DNA_Maverick 120877 120954 21 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 596872 597057 55 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold705 WUBlastX LTR_Ngaro 111558 112511 173 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy 4600 5451 254 + . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LTR_Gypsy 50373 50741 34 + . . . . . -1 -1 -1 . . . scaffold1544 WUBlastX DNA_hAT-Ac 11605 11862 86 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 465503 466060 119 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LINE_CR1 246169 246885 184 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LINE_CR1 94480 95451 237 + . . scaffold9 GLEAN mRNA 95410 95799 0.999934 + . ID=CGI_10006688; C29958 WUBlastX LINE_CR1 2814 3494 233 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 36241 37176 239 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_IS4EU 69276 69752 289 - . . . . . -1 -1 -1 . . . C26878 WUBlastX DNA_Harbinger 3142 4014 216 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 459973 460026 32 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_RTE-X 437088 437594 264 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_CR1 111554 112855 163 + . . . . . -1 -1 -1 . . . scaffold41400 WUBlastX DNA_Kolobok-IS4 117409 117624 65 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX DNA_IS4EU 106607 106729 41 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold36398 WUBlastX LINE_Penelope 2390 2953 215 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-BovB 515048 515152 41 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 273159 274325 201 + . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LINE_L1-Tx1 303702 303758 31 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Pao 417240 417293 23 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1004396 1004644 59 - . . . . . -1 -1 -1 . . . scaffold39212 WUBlastX DNA_hAT-Tip100 53419 53571 33 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold1459 WUBlastX LTR_Gypsy 110081 110236 20 + . . scaffold1459 GLEAN mRNA 92847 117435 0.999674 - . ID=CGI_10010107; scaffold853 WUBlastX LINE_L2 433195 433275 21 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; scaffold1532 WUBlastX LINE_RTE-X 410176 410643 53 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold37124 WUBlastX LTR_Gypsy 26779 26949 50 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_L1 629640 629921 40 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold126 WUBlastX LTR_Gypsy 277691 278389 42 + . . . . . -1 -1 -1 . . . scaffold1375 WUBlastX LTR_Pao 22458 23456 783 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 29387 30142 21 - . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX DNA_hAT-Tip100 30781 31266 28 - . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX LINE_CR1 9990 10469 339 - . . . . . -1 -1 -1 . . . C23316 WUBlastX LTR_Ngaro 547 660 32 - . . C23316 GLEAN mRNA 644 1111 0.999999 - . ID=CGI_10000116; scaffold33610 WUBlastX LTR_Gypsy 10663 10818 24 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 460316 460456 68 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 1043409 1043513 35 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold1866 WUBlastX LINE_RTE-BovB 472051 472299 157 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_RTE-BovB 472299 472934 130 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_RTE-X 24702 25601 199 + . . . . . -1 -1 -1 . . . C25392 WUBlastX DNA_Sola 95 664 283 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1-Tx1 567832 568836 192 - . . . . . -1 -1 -1 . . . scaffold41228 WUBlastX LINE_L1-Tx1 17788 18456 303 + . . scaffold41228 GLEAN mRNA 12628 43602 0.144447 - . ID=CGI_10004861; scaffold42226 WUBlastX DNA_Kolobok 121366 121638 87 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold1788 WUBlastX DNA_Maverick 36813 37028 145 - . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX DNA_TcMar-Tc1 154693 155034 62 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX DNA_TcMar-Tc1 171557 171772 27 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_L2 224610 225188 64 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1699 WUBlastX LTR_Gypsy 57876 58574 246 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_R2-Hero 333086 333499 350 - . . scaffold156 GLEAN mRNA 326940 337481 0.63561 + . ID=CGI_10026496; scaffold189 WUBlastX LINE_L1-Tx1 402923 403735 64 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_RTE-X 199011 199331 238 + . . scaffold925 GLEAN mRNA 185655 201680 0.878781 - . ID=CGI_10017418; scaffold773 WUBlastX LINE_RTE-X 216799 217038 55 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 1076247 1076423 21 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_CR1 51614 52027 217 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1017 WUBlastX LINE_RTE-X 84287 84541 40 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_CR1-L2 305027 305200 71 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_Kolobok-IS4 117206 117319 29 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 383992 384783 137 - . . . . . -1 -1 -1 . . . scaffold1767 WUBlastX LINE_RTE-BovB 221517 222695 314 + . . . . . -1 -1 -1 . . . scaffold42348 WUBlastX LINE_RTE-X 101741 102616 224 - . . scaffold42348 GLEAN mRNA 96568 107151 0.643244 - . ID=CGI_10006683; scaffold31 WUBlastX DNA_TcMar-Tc1 180766 181050 173 - . . scaffold31 GLEAN mRNA 167305 183497 0.965717 + . ID=CGI_10013560; scaffold70 WUBlastX LINE_L1-Tx1 335368 335622 44 + . . . . . -1 -1 -1 . . . C32176 WUBlastX LTR_Pao 9247 10239 90 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy 604196 604270 21 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_Gypsy 451896 452468 181 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LINE_L2 33389 33847 85 + . . . . . -1 -1 -1 . . . scaffold38370 WUBlastX LTR_DIRS 46133 47116 326 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 292762 292815 21 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_RTE-X 309621 309938 72 - . . . . . -1 -1 -1 . . . scaffold262 WUBlastX LINE_CR1-L2 24312 24884 135 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 326648 326818 41 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy 91189 92310 107 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Gypsy 132414 133310 375 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX DNA_Harbinger 212243 212554 97 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-X 8853 9032 29 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_L1-Tx1 84262 84363 27 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold1283 WUBlastX LINE_L1-Tx1 146111 146170 23 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 179450 179689 210 + . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX DNA_Academ 243034 243171 40 - . . scaffold1210 GLEAN mRNA 242968 243372 0.866433 - . ID=CGI_10014607; scaffold1210 WUBlastX DNA_Academ 243193 243753 207 - . . scaffold1210 GLEAN mRNA 242968 243372 0.866433 - . ID=CGI_10014607; scaffold42596 WUBlastX LTR_Gypsy 99161 99295 27 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-X 409024 409527 45 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 1001747 1002490 346 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Tc1 335485 336384 300 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_TcMar-Tc1 773397 773597 46 + . . . . . -1 -1 -1 . . . scaffold40560 WUBlastX LINE_L1-Tx1 35464 35562 61 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_PiggyBac 282598 282726 73 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 285039 285143 36 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 285176 285244 20 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 285485 285949 154 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold43146 WUBlastX LINE_L1-Tx1 8242 9729 54 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_RTE-X 260487 260954 244 - . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_En-Spm 191134 191334 79 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191508 191648 46 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold1445 WUBlastX LTR_Gypsy 48066 49385 242 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 64642 65070 44 - . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_Kolobok-IS4 108436 109125 266 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_CR1 624950 625684 468 - . . scaffold502 GLEAN mRNA 606784 627664 0.999597 + . ID=CGI_10024338; scaffold38494 WUBlastX LINE_L1-Tx1 56040 56720 409 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_Penelope 549084 549908 262 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_Penelope 549935 550309 149 - . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-X 30584 31324 253 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 30584 31324 253 - . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_RTE-X 31353 31667 161 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 31353 31667 161 - . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold942 WUBlastX LINE_L1-Tx1 93926 94528 139 - . . . . . -1 -1 -1 . . . C30708 WUBlastX LINE_L1-Tx1 3 1394 252 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Gypsy-Cigr 3855 4061 94 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_Penelope 1135584 1136255 133 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_Gypsy 672970 673776 289 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 692569 692799 33 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 693134 694561 201 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-BovB 217078 217353 35 - . . . . . -1 -1 -1 . . . C29184 WUBlastX LINE_L1-Tx1 5143 5967 182 - . . . . . -1 -1 -1 . . . scaffold743 WUBlastX DNA_Harbinger 208832 209416 302 + . . scaffold743 GLEAN mRNA 190625 210773 0.715666 - . ID=CGI_10008616; scaffold743 WUBlastX DNA_Harbinger 209430 209765 85 + . . scaffold743 GLEAN mRNA 190625 210773 0.715666 - . ID=CGI_10008616; C22542 WUBlastX LINE_L1-Tx1 169 891 232 - . . . . . -1 -1 -1 . . . C22542 WUBlastX LINE_L1-Tx1 1146 1496 222 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1-Tx1 339181 339414 23 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Pao 170554 172209 443 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold1512 WUBlastX DNA_PiggyBac 373154 373435 47 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX DNA_IS4EU 30033 30362 42 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_Harbinger 326654 327088 242 - . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX LTR_Gypsy 90468 90755 140 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_TcMar-Tc1 679593 679976 170 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 222318 223229 259 - . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1-Tx1 137003 138400 346 - . . . . . -1 -1 -1 . . . scaffold38448 WUBlastX LINE_RTE-X 16042 18825 263 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L2 165024 165587 173 - . . . . . -1 -1 -1 . . . C22360 WUBlastX LTR_DIRS 40 585 151 + . . . . . -1 -1 -1 . . . C22360 WUBlastX LTR_DIRS 554 1018 290 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 684627 684872 123 + . . . . . -1 -1 -1 . . . scaffold340 WUBlastX DNA_IS4EU 217890 218042 86 + . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LINE_Penelope 6766 6966 39 + . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LINE_Penelope 6972 7355 207 + . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LINE_Penelope 7268 8017 207 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-BovB 1145515 1146750 162 - . . . . . -1 -1 -1 . . . scaffold1838 WUBlastX LINE_RTE-X 365215 367605 397 + . . scaffold1838 GLEAN mRNA 361613 368125 0.631432 + . ID=CGI_10014266; scaffold348 WUBlastX DNA_Crypton 592805 593539 318 - . . . . . -1 -1 -1 . . . scaffold348 WUBlastX DNA_Crypton 593452 593835 192 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Maverick 402549 403001 303 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_L1-Tx1 72633 73052 93 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_TcMar-Tc1 698815 699693 423 - . . scaffold365 GLEAN mRNA 690001 715431 0.888354 - . ID=CGI_10022752; scaffold1214 WUBlastX DNA_TcMar-Tc1 356893 357636 291 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX DNA_TcMar-Tc1 357645 357812 72 + . . . . . -1 -1 -1 . . . scaffold36334 WUBlastX LINE_RTE-X 9441 9641 37 - . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX LTR_Pao 334127 334576 22 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold750 WUBlastX DNA_IS4EU 465191 465313 28 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_IS4EU 465307 465735 236 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_IS4EU 465738 466106 200 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_IS4EU 466420 466716 88 - . . . . . -1 -1 -1 . . . C29022 WUBlastX DNA_Harbinger 5409 6083 401 - . . . . . -1 -1 -1 . . . scaffold38194 WUBlastX DNA_Maverick 47663 48148 377 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX DNA_TcMar-Tc1 134537 135226 381 - . . scaffold1865 GLEAN mRNA 122219 140121 0.998221 + . ID=CGI_10013535; scaffold1532 WUBlastX LTR_Gypsy 651869 652477 405 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_RTE-X 288737 289198 111 - . . . . . -1 -1 -1 . . . scaffold39778 WUBlastX LINE_RTE-X 42561 43463 451 + . . scaffold39778 GLEAN mRNA 34210 51922 0.521329 + . ID=CGI_10003608; scaffold343 WUBlastX DNA_TcMar-Pogo 213666 214310 341 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc2 530655 531173 417 + . . scaffold48 GLEAN mRNA 529087 543822 0.928882 + . ID=CGI_10023906; scaffold922 WUBlastX LINE_L1-Tx1 7979 8161 39 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 476520 477029 162 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold470 WUBlastX LTR_Gypsy 1397 1513 95 + . . . . . -1 -1 -1 . . . scaffold470 WUBlastX LTR_Gypsy 2519 2995 211 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 340671 340901 99 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_Harbinger 144247 144462 123 - . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX LINE_L1-Tx1 55874 56191 81 - . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX LINE_L1-Tx1 56193 56861 265 - . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX DNA_Maverick 30851 30982 73 - . . . . . -1 -1 -1 . . . scaffold38194 WUBlastX DNA_Maverick 47325 47654 252 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LTR_DIRS 128752 129372 367 + . . . . . -1 -1 -1 . . . C25652 WUBlastX LTR_Gypsy 3237 3395 99 + . . . . . -1 -1 -1 . . . C35786 WUBlastX LINE_L1-Tx1 15086 15520 128 - . . . . . -1 -1 -1 . . . C35786 WUBlastX LINE_L1-Tx1 15467 15994 284 - . . . . . -1 -1 -1 . . . C35786 WUBlastX LINE_L1-Tx1 16003 16245 136 - . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_RTE-X 19438 19617 29 + . . . . . -1 -1 -1 . . . scaffold743 WUBlastX DNA_Harbinger 135674 135712 27 - . . . . . -1 -1 -1 . . . scaffold743 WUBlastX DNA_Harbinger 135771 136721 578 - . . . . . -1 -1 -1 . . . C31096 WUBlastX LTR_Ngaro 5737 6378 469 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold1097 WUBlastX LINE_RTE-BovB 683079 683210 57 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold128 WUBlastX LINE_RTE-X 189275 190153 348 + . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_Ngaro 52836 54179 575 + . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LTR_Gypsy 29100 30572 378 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LTR_Gypsy 30853 31314 162 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1-Tx1 124937 125518 92 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1-Tx1 126027 126560 234 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1-Tx1 126652 126915 214 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-X 158792 159340 259 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Tip100 761731 762231 171 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_TcMar-Pogo 1057125 1058063 457 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-X 781732 782889 572 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LTR_Gypsy 249274 251256 584 - . . scaffold546 GLEAN mRNA 249088 251722 0.586602 - . ID=CGI_10020999; scaffold351 WUBlastX DNA_Maverick 232181 233458 672 - . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX LTR_Gypsy 62506 62724 35 + . . . . . -1 -1 -1 . . . scaffold36598 WUBlastX LTR_Ngaro 28892 29107 112 - . . scaffold36598 GLEAN mRNA 27586 31293 0.99428 - . ID=CGI_10002013; scaffold301 WUBlastX LTR_Gypsy 633218 634249 748 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_RTE-X 406877 407668 80 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L2 1083737 1085011 487 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold837 WUBlastX LTR_Gypsy 7956 8450 452 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_Gypsy 44383 44886 54 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LTR_Gypsy 81372 82139 236 + . . scaffold206 GLEAN mRNA 57948 87960 0.702119 + . ID=CGI_10011372; scaffold1665 WUBlastX LINE_Penelope 237480 237962 133 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 1040227 1040445 98 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1040444 1041454 276 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold144 WUBlastX LINE_L2 468226 469257 651 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_RTE-X 331492 332895 620 + . . scaffold1241 GLEAN mRNA 329086 342003 0.999796 + . ID=CGI_10016436; scaffold425 WUBlastX LINE_CR1-L2 56560 57435 452 - . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_L1-Tx1 36515 36910 132 - . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_RTE-X 108946 110001 484 + . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold1551 WUBlastX LTR_Ngaro 73714 74142 165 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold393 WUBlastX LTR_Gypsy 994829 995185 75 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1-Tx1 194142 195566 538 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1-Tx1 195853 196041 65 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Sola 1253323 1253649 130 - . . . . . -1 -1 -1 . . . scaffold35438 WUBlastX LINE_L1-Tx1 9529 10494 52 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold41248 WUBlastX LINE_L1-Tx1 21610 22476 95 - . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LINE_L1-Tx1 22463 23581 494 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1 56684 57094 96 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L2 552882 554951 720 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Copia 165216 166661 870 - . . scaffold1009 GLEAN mRNA 163164 171986 0.959931 - . ID=CGI_10028721; scaffold1104 WUBlastX LINE_R2-Hero 429925 430017 55 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 1831737 1831871 27 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 1833337 1834287 130 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX DNA_IS4EU 798434 799444 742 - . . scaffold492 GLEAN mRNA 798431 799219 1 - . ID=CGI_10024865; scaffold492 WUBlastX DNA_IS4EU 800372 800419 32 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX DNA_IS4EU 800893 801165 108 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 570333 570746 35 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 570333 570746 35 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; C27146 WUBlastX LTR_Gypsy 862 1668 362 - . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX LINE_RTE-BovB 130394 131401 856 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LINE_RTE-X 97001 98581 526 + . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX DNA_IS 74424 74636 314 - . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX DNA_IS 74614 75033 627 - . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX LINE_L1-Tx1 19819 20079 53 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold122 WUBlastX LINE_RTE-X 240432 240686 75 + . . . . . -1 -1 -1 . . . scaffold1261 WUBlastX LINE_L1-Tx1 19724 19930 65 - . . . . . -1 -1 -1 . . . scaffold1261 WUBlastX LINE_L1-Tx1 19942 21030 620 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_CR1 277180 277323 39 + . . . . . -1 -1 -1 . . . scaffold27 WUBlastX LTR_Gypsy 58853 58948 24 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_CR1 153985 154284 55 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_Rex-Babar 316550 316603 20 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1 587528 587782 31 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_CR1-L2 332653 332694 20 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L2 82392 82772 49 - . . scaffold829 GLEAN mRNA 82186 82748 0.9999 - . ID=CGI_10021139; scaffold1796 WUBlastX LINE_CR1 63510 63962 74 + . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX LINE_CR1 53750 53896 32 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Gypsy 33947 34564 33 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 239484 239645 75 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 706383 706553 43 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_L2 750584 750859 28 + . . . . . -1 -1 -1 . . . scaffold38934 WUBlastX LTR_Ngaro 20043 20228 39 - . . scaffold38934 GLEAN mRNA 14643 26625 0.999796 + . ID=CGI_10003096; scaffold1307 WUBlastX LTR_Gypsy 240626 240703 38 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 27276 27332 22 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Gypsy 142758 142886 25 + . . scaffold453 GLEAN mRNA 138101 157244 0.160604 + . ID=CGI_10015041; scaffold77 WUBlastX LINE_L1-Tx1 401172 401456 26 - . . . . . -1 -1 -1 . . . scaffold32064 WUBlastX DNA_IS4EU 4964 5080 58 - . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_IS4EU 30469 30549 20 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold772 WUBlastX DNA_hAT-hAT5 243667 243828 54 + . . scaffold772 GLEAN mRNA 238963 261048 0.714694 - . ID=CGI_10016587; scaffold160 WUBlastX DNA_hAT-Tip100 523789 523983 38 - . . scaffold160 GLEAN mRNA 523738 543493 0.85871 - . ID=CGI_10020606; scaffold41248 WUBlastX LTR_Gypsy 16372 17325 20 + . . . . . -1 -1 -1 . . . scaffold43072 WUBlastX LTR_Gypsy 24474 24593 45 - . . scaffold43072 GLEAN mRNA 22754 55456 0.695082 - . ID=CGI_10008697; scaffold440 WUBlastX LTR_Gypsy 40402 40545 70 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 43768 43911 70 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_Gypsy 5936 6133 28 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Gypsy 516891 517124 39 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX DNA_Harbinger 112760 113209 22 - . . scaffold489 GLEAN mRNA 93550 113740 0.603671 - . ID=CGI_10020228; scaffold11 WUBlastX DNA_Harbinger 54794 54970 74 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Harbinger 657742 657912 61 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_TcMar-Tc1 440742 440936 71 - . . scaffold100 GLEAN mRNA 434385 451106 0.72825 - . ID=CGI_10026438; scaffold42704 WUBlastX DNA_Kolobok-Hyd 104657 104713 23 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 192057 192422 42 + . . scaffold149 GLEAN mRNA 179199 193397 0.990232 - . ID=CGI_10025295; scaffold36642 WUBlastX LINE_L1 3125 3268 43 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold1108 WUBlastX LINE_L1 604622 604870 60 + . . . . . -1 -1 -1 . . . scaffold766 WUBlastX LINE_I-Nimb 38031 38474 46 + . . scaffold766 GLEAN mRNA 34909 39578 1 + . ID=CGI_10003456; scaffold621 WUBlastX LINE_Penelope 349979 350272 47 - . . . . . -1 -1 -1 . . . scaffold401 WUBlastX LINE_RTE-X 156382 156465 35 - . . scaffold401 GLEAN mRNA 151217 157765 0.728444 + . ID=CGI_10006994; scaffold198 WUBlastX DNA_TcMar-Marin 426676 426807 20 + . . scaffold198 GLEAN mRNA 419796 449287 0.84054 + . ID=CGI_10027808; scaffold1241 WUBlastX LINE_RTE-X 260396 260545 34 + . . scaffold1241 GLEAN mRNA 230364 272061 0.65035 - . ID=CGI_10016431; scaffold781 WUBlastX LINE_RTE-X 3578 4171 72 + . . . . . -1 -1 -1 . . . scaffold436 WUBlastX LINE_RTE-BovB 5300 5368 20 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 476889 477104 33 - . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LINE_RTE-X 134248 134343 25 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_RTE-BovB 12503 12967 38 + . . . . . -1 -1 -1 . . . scaffold1804 WUBlastX DNA_PiggyBac 259163 259396 38 - . . scaffold1804 GLEAN mRNA 259046 259441 1 - . ID=CGI_10013376; scaffold301 WUBlastX DNA_Sola 956466 956624 65 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold1255 WUBlastX LINE_L1-Tx1 477738 477932 40 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LINE_L1-Tx1 12537 12704 81 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1-Tx1 73582 73884 31 - . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold402 WUBlastX LINE_L1-Tx1 266800 267084 46 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1-Tx1 605217 605393 64 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX DNA_TcMar-Tc1 284657 284827 65 - . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX DNA_TcMar-Tc1 27881 28219 58 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_CR1 1091801 1092214 45 - . . . . . -1 -1 -1 . . . scaffold532 WUBlastX LINE_Rex-Babar 27062 27262 30 + . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_L2 393667 393915 64 - . . . . . -1 -1 -1 . . . C30608 WUBlastX LTR_Copia 4422 4523 20 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_Merlin 101325 101594 62 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 443884 444150 34 + . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_RTE-BovB 147102 147434 59 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 483837 483980 47 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold337 WUBlastX LINE_DRE 1637912 1638310 40 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_Harbinger 1276375 1276599 48 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_Gypsy 136522 136689 45 - . . scaffold1321 GLEAN mRNA 136608 137201 1 - . ID=CGI_10010662; scaffold610 WUBlastX DNA_hAT-Ac 19453 19566 100 + . . scaffold610 GLEAN mRNA 19426 23428 0.987056 + . ID=CGI_10021082; scaffold562 WUBlastX DNA_IS4EU 448199 448408 46 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_TcMar-Marin 600886 601041 35 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_Penelope 403300 403836 37 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_Penelope 3610 4089 43 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_Penelope 185249 185521 65 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok-Hyd 395170 395295 31 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold1403 WUBlastX DNA_Maverick 563486 563806 69 + . . . . . -1 -1 -1 . . . scaffold1747 WUBlastX DNA_PiggyBac 43443 43544 55 + . . . . . -1 -1 -1 . . . scaffold1488 WUBlastX LINE_RTE-X 96285 96545 36 + . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold630 WUBlastX LINE_RTE-X 55198 55452 53 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 134315 134515 78 + . . scaffold313 GLEAN mRNA 134319 135998 0.83601 - . ID=CGI_10026584; scaffold923 WUBlastX LINE_RTE-X 38202 38414 49 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_RTE-X 243181 243393 63 + . . . . . -1 -1 -1 . . . scaffold866 WUBlastX DNA_Sola 87454 87627 86 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold343 WUBlastX LINE_L1-Tx1 575001 575294 95 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_L1 5636 5821 62 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 205417 205755 27 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold1862 WUBlastX LINE_CR1-L2 538807 538995 65 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LTR_Ngaro 472260 472505 53 + . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LINE_L2 51780 51890 20 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy-Cigr 149907 150221 89 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX RC_Helitron 184788 185027 53 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX RC_Helitron 45566 45715 102 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold520 WUBlastX LTR_Gypsy 30193 31101 79 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 146272 146658 70 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy 111062 111115 25 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Gypsy 345121 345411 89 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_Penelope 321000 321095 41 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX LINE_RTE-X 116023 116322 65 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1040990 1041229 122 + . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_RTE-X 136101 136271 89 - . . scaffold783 GLEAN mRNA 131104 140635 0.99762 + . ID=CGI_10011677; scaffold1417 WUBlastX DNA_TcMar-Tc1 56781 57026 52 + . . . . . -1 -1 -1 . . . C32516 WUBlastX LINE_L1-Tx1 3358 3702 74 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX DNA_PiggyBac 641549 641635 57 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L2 134043 134231 75 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L2 947378 947926 36 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L2 1436140 1436679 53 + . . . . . -1 -1 -1 . . . scaffold38354 WUBlastX LTR_Gypsy 3760 3903 49 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_I 81695 81832 28 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_IS4EU 265250 265477 94 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_IS4EU 768831 768959 31 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_IS4EU 769587 769793 29 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX DNA_IS4EU 496992 497306 108 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_Penelope 761654 762010 40 + . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX DNA_Kolobok 16837 17133 82 + . . scaffold1789 GLEAN mRNA 10291 23583 0.974284 + . ID=CGI_10003175; scaffold1537 WUBlastX LINE_Penelope 8581 8742 88 + . . scaffold1537 GLEAN mRNA 2 9370 0.999999 + . ID=CGI_10001150; scaffold583 WUBlastX LINE_Penelope 255343 255543 80 - . . . . . -1 -1 -1 . . . scaffold40068 WUBlastX LINE_LOA 69840 69971 21 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L2 214491 214922 63 - . . . . . -1 -1 -1 . . . scaffold34282 WUBlastX LINE_L2 14291 14380 22 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold37876 WUBlastX DNA_PiggyBac 7 300 77 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-X 265873 266067 41 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold105 WUBlastX LINE_RTE-X 419676 420029 84 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_RTE-X 622680 622967 40 + . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold929 WUBlastX LINE_RTE-X 7443 7775 21 - . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX DNA_Sola 18510 18920 82 + . . . . . -1 -1 -1 . . . C23514 WUBlastX DNA_Sola 1789 2169 75 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_CR1-L2 82027 82152 42 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LTR_Pao 56273 56440 84 + . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX LTR_Copia 209974 210588 92 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_CR1 1209726 1210037 34 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1462 WUBlastX LINE_L2 1624 2067 95 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_DIRS? 449921 450589 55 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_IS4EU 565039 565542 108 + . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX DNA_TcMar-Marin 186057 186464 87 - . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold1219 WUBlastX DNA_hAT-Blackja 896885 897184 80 - . . scaffold1219 GLEAN mRNA 887545 905179 0.837482 - . ID=CGI_10024307; scaffold591 WUBlastX DNA_Harbinger 487055 487174 33 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_Harbinger 487303 487446 55 - . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1 169683 169757 20 - . . . . . -1 -1 -1 . . . scaffold37378 WUBlastX DNA_MuDR 28076 28387 24 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX DNA_Kolobok 66474 66656 88 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX DNA_Kolobok 67447 67590 30 + . . . . . -1 -1 -1 . . . scaffold1726 WUBlastX LINE_RTE-BovB 172768 172944 91 - . . scaffold1726 GLEAN mRNA 161002 182449 0.998535 + . ID=CGI_10015636; scaffold312 WUBlastX DNA_Maverick 38001 38468 116 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_DRE 103827 103886 20 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_L1-Tx1 277900 278040 71 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1-Tx1 611592 611798 73 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L2 405183 405611 95 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 37610 37798 44 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_DIRS 621558 621812 53 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LTR_Gypsy 62876 63289 87 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold1301 WUBlastX LTR_Gypsy 706352 706738 89 - . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy 118015 118113 58 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Gypsy 919308 919481 24 + . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LTR_Gypsy 187498 187917 123 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 168145 168459 98 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LTR_Gypsy 61353 61673 131 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold41884 WUBlastX RC_Helitron 51652 52116 81 + . . scaffold41884 GLEAN mRNA 50798 64593 0.351321 + . ID=CGI_10005780; scaffold1599 WUBlastX DNA_IS4EU 775254 775679 85 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX DNA_IS4EU 480199 480582 83 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX DNA_Kolobok 18398 18631 80 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-X 314354 314449 45 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LINE_RTE-X 290396 290617 88 + . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_RTE-X 78661 78873 93 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_RTE-X 426529 426840 65 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX DNA_Sola 522493 522837 23 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_Sola 449932 450210 77 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 1270 1419 95 - . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LINE_RTE-X 78117 78443 24 - . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold576 WUBlastX LTR_Gypsy-Cigr 33355 33498 104 - . . . . . -1 -1 -1 . . . scaffold1056 WUBlastX LTR_DIRS 144234 144365 27 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX DNA_IS4EU 4944 5360 101 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX RC_Helitron 282945 283460 66 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_hAT-Tip100 560635 560850 64 - . . . . . -1 -1 -1 . . . scaffold38822 WUBlastX DNA_Harbinger 56574 56732 121 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_L1-Tx1 244609 244827 71 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 191992 192315 44 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold963 WUBlastX LINE_RTE-X 217041 217370 68 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 841426 842319 37 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX DNA_Maverick 232390 232896 50 + . . . . . -1 -1 -1 . . . scaffold118 WUBlastX LINE_RTE-X 22229 22789 27 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX DNA_Sola 24829 25218 93 - . . scaffold1323 GLEAN mRNA 24733 25119 0.618241 - . ID=CGI_10009081; scaffold1323 WUBlastX DNA_Sola 24829 25218 93 - . . scaffold1323 GLEAN mRNA 5100 53779 0.182338 + . ID=CGI_10009080; scaffold39640 WUBlastX LINE_L1-Tx1 57053 57415 128 + . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX LINE_L1-Tx1 40901 41203 33 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold1179 WUBlastX LINE_L1-Tx1 854290 854463 54 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L2 242312 242872 94 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L2 449656 449931 22 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Ngaro 305286 305738 111 - . . . . . -1 -1 -1 . . . scaffold1499 WUBlastX LTR_DIRS 3435 3704 81 - . . . . . -1 -1 -1 . . . scaffold1499 WUBlastX LTR_DIRS 3855 4238 33 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_DIRS 265302 265571 81 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_DIRS 265722 266105 33 - . . . . . -1 -1 -1 . . . scaffold1056 WUBlastX LTR_DIRS 143629 144165 88 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_Harbinger 487321 487527 26 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_Kolobok 301458 301637 35 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Kolobok 302372 302482 59 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1882 WUBlastX LINE_Penelope 69259 69561 46 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_Penelope 224261 224623 82 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LTR_Ngaro 136801 136983 59 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 369226 369291 27 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1240802 1240900 52 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 89740 89874 22 - . . . . . -1 -1 -1 . . . scaffold35198 WUBlastX DNA_TcMar-Marin 20492 20668 56 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LINE_L1-Tx1 80816 81325 87 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L1-Tx1 28090 28707 26 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1-Tx1 155603 156214 45 + . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L2 20120 20347 148 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LTR_Pao 344392 344736 158 - . . scaffold942 GLEAN mRNA 341388 349228 0.998888 - . ID=CGI_10019165; scaffold43608 WUBlastX LTR_ERV1 193782 194420 143 + . . . . . -1 -1 -1 . . . C32406 WUBlastX LINE_RTE-BovB 9554 9763 94 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LTR_Gypsy 61413 61736 167 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold100 WUBlastX LTR_Ngaro 933813 934004 138 - . . . . . -1 -1 -1 . . . scaffold793 WUBlastX DNA_NOF 62970 63155 89 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX DNA_NOF 63663 63770 58 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold41974 WUBlastX LINE_RTE-BovB 30891 31721 72 + . . scaffold41974 GLEAN mRNA 275 36868 0.405305 - . ID=CGI_10005902; scaffold204 WUBlastX DNA_TcMar-Marin 419574 419720 62 + . . . . . -1 -1 -1 . . . C30864 WUBlastX LINE_L1-Tx1 4396 4560 76 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Pao 180369 180812 154 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_CR1 141217 141258 20 - . . scaffold1174 GLEAN mRNA 122742 144408 0.527772 + . ID=CGI_10026027; scaffold37358 WUBlastX LINE_CR1 40152 40472 125 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_Rex-Babar 733249 734229 108 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 321323 321637 52 - . . . . . -1 -1 -1 . . . scaffold823 WUBlastX LTR_Ngaro 39604 39786 46 + . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX LTR_Ngaro 122760 123323 63 - . . . . . -1 -1 -1 . . . scaffold227 WUBlastX LINE_Penelope 307084 307311 28 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_Penelope 69866 70171 129 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-BovB 797412 797522 20 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-BovB 797537 797629 34 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_PiggyBac 191774 192001 60 + . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 30840 31016 69 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_RTE-X 322873 323115 87 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Ngaro 651662 652816 32 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Harbinger 426403 426762 52 - . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_RTE-BovB 588126 588449 192 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1039417 1039620 71 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_L1-Tx1 240852 241886 139 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold1036 WUBlastX LINE_L1-Tx1 242768 243697 603 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold1788 WUBlastX DNA_Maverick 30525 30680 26 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX LTR_DIRS 97134 97430 206 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_IS 86152 86754 969 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 126176 126562 186 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_CR1-L2 307719 308279 479 + . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L1-Tx1 299197 299295 21 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Gypsy 43004 44350 458 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 76310 77272 135 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 77290 77616 70 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold168 WUBlastX LINE_L1-Tx1 927627 929540 765 + . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX LTR_Pao 80564 80644 25 - . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX LTR_Pao 80629 80967 177 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Copia 31943 32419 34 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 238253 238429 68 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Gypsy 54286 54720 49 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold1570 WUBlastX LTR_Gypsy 39336 40031 146 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 198141 198203 24 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold42592 WUBlastX DNA_IS4EU 143662 143766 24 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L1-Tx1 6554 7114 64 + . . . . . -1 -1 -1 . . . scaffold40874 WUBlastX LINE_L1-Tx1 80491 80928 132 - . . scaffold40874 GLEAN mRNA 69114 99157 0.188483 + . ID=CGI_10004438; scaffold503 WUBlastX LINE_L1-Tx1 20889 21377 57 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_L1-Tx1 600539 600754 141 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_Penelope 124349 124570 44 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_Penelope 186530 186820 146 - . . . . . -1 -1 -1 . . . scaffold39536 WUBlastX LINE_RTE-X 71322 71957 45 + . . . . . -1 -1 -1 . . . scaffold1643 WUBlastX LTR_Ngaro 182639 182836 109 - . . . . . -1 -1 -1 . . . scaffold39040 WUBlastX LINE_L1-Tx1 27120 27677 84 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy-Cigr 148680 150500 1085 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_DIRS 57709 59004 720 - . . . . . -1 -1 -1 . . . C29936 WUBlastX DNA_En-Spm 2097 2645 378 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 232119 232415 158 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LTR_DIRS 274800 276701 800 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LTR_DIRS 277021 277536 77 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_L1-Tx1 83262 83963 56 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 34589 35170 363 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy 65754 66497 443 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold712 WUBlastX LINE_RTE-X 397623 398342 372 - . . . . . -1 -1 -1 . . . C24608 WUBlastX DNA_En-Spm 1276 2823 1086 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 1047664 1049442 931 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 119152 120357 128 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_CR1-L2 170477 170866 35 + . . scaffold1 GLEAN mRNA 163980 185527 0.742263 + . ID=CGI_10013469; scaffold1615 WUBlastX LTR_Gypsy 5076 5141 56 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 524273 524320 27 - . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX DNA_Harbinger 47881 48165 164 - . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold1836 WUBlastX LINE_Jockey 35787 36488 121 + . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_Penelope 132080 132421 179 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1 471888 472088 73 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1 569460 569816 32 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_RTE-BovB 92351 92830 155 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1189 WUBlastX LINE_RTE-X 235675 235854 59 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Ngaro 367448 368374 69 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L1-Tx1 334988 335254 194 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L1-Tx1 335500 336189 288 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L1-Tx1 336036 337244 298 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 6380 7069 458 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Gypsy 416191 416901 470 + . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Maverick 65143 65760 67 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_CR1 262710 262958 183 - . . scaffold1800 GLEAN mRNA 251153 263258 0.999949 - . ID=CGI_10016404; scaffold622 WUBlastX LINE_L2 180613 181035 118 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy-Cigr 161820 162497 159 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_DIRS 518705 519076 125 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LINE_L1-Tx1 267703 268491 57 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Kolobok 493287 493478 84 - . . scaffold267 GLEAN mRNA 493275 498578 0.739869 - . ID=CGI_10018314; scaffold314 WUBlastX LINE_Penelope 111710 112156 73 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 213410 213721 65 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 97975 98859 70 + . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX DNA_TcMar-Tc1 145320 145691 62 + . . . . . -1 -1 -1 . . . scaffold35894 WUBlastX LINE_L1-Tx1 25730 26188 69 - . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LINE_CR1-L2 1777 2481 97 + . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LINE_CR1-L2 2535 3410 525 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy-Cigr 66667 66885 85 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold41660 WUBlastX LINE_L1-Tx1 109560 109907 33 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 109913 111604 943 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold165 WUBlastX LTR_Gypsy 110693 111025 44 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold39790 WUBlastX LINE_L2 4290 4868 170 + . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LTR_Gypsy-Cigr 139149 139649 211 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX DNA_Harbinger 130144 130485 90 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_L1 577001 577105 20 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LINE_L2 137985 139706 1199 - . . scaffold222 GLEAN mRNA 134195 141016 0.626444 - . ID=CGI_10007124; scaffold1794 WUBlastX LINE_RTE-X 577019 580417 984 + . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LINE_RTE-X 137301 140756 966 + . . . . . -1 -1 -1 . . . scaffold1600 WUBlastX LTR_Gypsy 251232 252053 68 + . . . . . -1 -1 -1 . . . scaffold75 WUBlastX RC_Helitron 91321 92214 53 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy-Cigr 132613 133956 104 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold681 WUBlastX LTR_Gypsy 269324 271414 1407 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 705466 705933 148 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1344939 1345277 54 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1346194 1346223 22 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_R2-Hero 112544 113095 172 - . . . . . -1 -1 -1 . . . scaffold139 WUBlastX LTR_DIRS 4721 5386 180 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_CR1 262967 263656 113 - . . . . . -1 -1 -1 . . . scaffold749 WUBlastX LINE_RTE-X 53826 54248 118 - . . scaffold749 GLEAN mRNA 51985 56678 1 - . ID=CGI_10002827; scaffold828 WUBlastX LINE_L1-Tx1 75632 76267 344 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L1-Tx1 76766 77839 777 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold839 WUBlastX LTR_Gypsy 91613 92200 548 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 280970 281296 42 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 677361 678125 169 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Ngaro 1135001 1135837 111 - . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold190 WUBlastX LTR_DIRS 194191 194289 35 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_IS4EU 659197 659583 187 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold43836 WUBlastX DNA_Harbinger 199892 200263 185 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 545591 546175 102 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 547070 547243 60 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX DNA_Merlin 393034 393522 177 - . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX DNA_Maverick 42657 42974 154 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Maverick 59314 59766 115 + . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_RTE-X 28885 29379 134 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Ngaro 303778 304539 143 + . . scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold1337 WUBlastX DNA_TcMar-Tc1 228176 228457 87 + . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX LTR_Gypsy 82380 82724 354 - . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LTR_Gypsy 82380 82724 354 - . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold1301 WUBlastX LTR_Pao 732105 733529 1064 + . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX LTR_Gypsy 80453 81937 534 - . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold1387 WUBlastX LTR_Copia 947 2782 905 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L2 344002 344766 153 + . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX LTR_Gypsy-Cigr 260098 260823 186 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold42790 WUBlastX LTR_Gypsy 154513 155250 175 + . . . . . -1 -1 -1 . . . scaffold1260 WUBlastX DNA_TcMar-Tc2 120495 121184 194 + . . . . . -1 -1 -1 . . . scaffold37844 WUBlastX LINE_RTE-X 36135 36848 164 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Pao 408233 408436 39 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold42166 WUBlastX LINE_RTE-X 70897 73230 1445 + . . . . . -1 -1 -1 . . . scaffold532 WUBlastX RC_Helitron 279344 284014 1444 - . . scaffold532 GLEAN mRNA 274363 287689 0.998459 - . ID=CGI_10012533; scaffold3 WUBlastX RC_Helitron 1328452 1333122 1444 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX RC_Helitron 201933 206603 1444 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 691690 692949 741 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 822215 822340 103 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_CR1 191039 191095 28 - . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_Kolobok 17769 18077 82 - . . scaffold1782 GLEAN mRNA 7792 19893 0.99249 - . ID=CGI_10004240; scaffold1782 WUBlastX DNA_Kolobok 19115 19231 37 - . . scaffold1782 GLEAN mRNA 7792 19893 0.99249 - . ID=CGI_10004240; scaffold1149 WUBlastX LINE_I-Nimb 560195 561142 37 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L1 184419 184748 121 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L1-Tx1 1239061 1239180 89 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LTR_DIRS 122671 123045 127 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1-Tx1 910967 911338 107 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Gypsy 380071 381750 1464 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Pao 30945 31040 93 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Pao 1018984 1020513 774 - . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LTR_Gypsy 137607 139286 632 - . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LTR_Gypsy 139499 140194 540 - . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LTR_Gypsy 140145 140939 487 - . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LTR_Gypsy 38562 39365 220 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_Harbinger 131179 131850 179 - . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_Harbinger 26455 26559 35 + . . scaffold37880 GLEAN mRNA 25813 26910 0.999833 + . ID=CGI_10002534; scaffold510 WUBlastX DNA_hAT-hATw 296568 296615 25 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_Penelope 572053 572199 43 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold41502 WUBlastX DNA_MuDR 27636 28853 153 + . . scaffold41502 GLEAN mRNA 4255 41708 0.838822 + . ID=CGI_10005171; scaffold219 WUBlastX LTR_DIRS 120827 121477 77 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LTR_DIRS 121504 121794 57 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LTR_DIRS 121832 122101 71 + . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_TcMar-Pogo 28901 29248 137 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy-Troyk 51985 52065 26 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LTR_Gypsy 63573 66704 1729 + . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LTR_Gypsy 66714 70346 1793 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold43026 WUBlastX DNA_IS4EU 171456 171671 120 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_Penelope 503550 504257 138 - . . . . . -1 -1 -1 . . . scaffold36768 WUBlastX LINE_L1-Tx1 36533 36691 82 + . . scaffold36768 GLEAN mRNA 29335 37620 1 + . ID=CGI_10002113; scaffold36768 WUBlastX LINE_L1-Tx1 36685 37212 169 + . . scaffold36768 GLEAN mRNA 29335 37620 1 + . ID=CGI_10002113; scaffold751 WUBlastX LTR_Gypsy 119902 120330 240 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold853 WUBlastX LINE_I 442978 444231 140 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX DNA_IS4EU 283100 283183 52 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Maverick 4289 4474 83 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_RTE-X 486305 486622 59 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LINE_CR1-L2 484588 484797 99 - . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX LINE_CR1 141706 142875 225 - . . scaffold1119 GLEAN mRNA 133915 143385 0.654676 + . ID=CGI_10009604; scaffold1119 WUBlastX LINE_CR1 141706 142875 225 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold40134 WUBlastX DNA_Harbinger 27976 28320 99 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold973 WUBlastX LTR_Gypsy 217988 218200 118 - . . . . . -1 -1 -1 . . . scaffold148 WUBlastX DNA_TcMar-Fot1 72027 72308 140 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_RTE-X 285913 286566 169 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_CR1-L2 590208 590663 247 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold578 WUBlastX LTR_Ngaro 382894 383430 224 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L2 706342 706566 110 + . . . . . -1 -1 -1 . . . scaffold908 WUBlastX LTR_Ngaro 318720 319196 31 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 318083 318616 91 + . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX DNA_Harbinger 1267 1656 236 - . . . . . -1 -1 -1 . . . scaffold37740 WUBlastX DNA_Harbinger 46713 46973 121 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Kolobok 338980 339240 84 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Kolobok 340976 341164 73 - . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX DNA_MuDR 36714 37457 247 + . . scaffold39240 GLEAN mRNA 34664 37858 0.999618 - . ID=CGI_10003247; scaffold41346 WUBlastX DNA_P 38392 39114 137 + . . . . . -1 -1 -1 . . . scaffold509 WUBlastX DNA_TcMar-Tc1 16959 17654 191 + . . scaffold509 GLEAN mRNA 496 19427 0.999716 - . ID=CGI_10018635; scaffold1785 WUBlastX DNA_TcMar-Tc1 601151 601762 224 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 517628 518635 775 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_Gypsy 154359 156242 1697 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_Gypsy 156248 156856 241 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 64382 64672 152 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_RTE-X 35928 36401 143 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold42930 WUBlastX LINE_L1-Tx1 196628 197779 102 - . . . . . -1 -1 -1 . . . scaffold870 WUBlastX DNA_hAT 48885 49019 20 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold368 WUBlastX LINE_CR1 176663 176947 129 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_En-Spm 53055 53171 25 + . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 41754 41951 34 - . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 42487 42600 55 - . . . . . -1 -1 -1 . . . scaffold327 WUBlastX LINE_RTE-X 38134 38634 30 - . . . . . -1 -1 -1 . . . scaffold327 WUBlastX LINE_RTE-X 38771 39052 84 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 1137426 1137560 63 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold576 WUBlastX DNA_hAT 315302 316675 183 - . . scaffold576 GLEAN mRNA 315203 324696 0.999395 - . ID=CGI_10018773; scaffold576 WUBlastX DNA_hAT 316863 317015 43 - . . scaffold576 GLEAN mRNA 315203 324696 0.999395 - . ID=CGI_10018773; scaffold1249 WUBlastX LINE_CR1-L2 259781 260641 198 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold419 WUBlastX LINE_RTE-BovB 252230 252466 157 + . . scaffold419 GLEAN mRNA 243081 266501 0.999183 - . ID=CGI_10028337; scaffold40624 WUBlastX LINE_RTE-X 1950 2177 100 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX DNA_Sola 54905 55141 21 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1 476431 476541 29 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold588 WUBlastX LINE_Penelope 145993 146373 203 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold1267 WUBlastX LINE_RTE-X 1044356 1044853 183 + . . scaffold1267 GLEAN mRNA 1030598 1050254 0.995555 + . ID=CGI_10025181; scaffold1267 WUBlastX LINE_RTE-X 1045200 1045529 71 + . . scaffold1267 GLEAN mRNA 1030598 1050254 0.995555 + . ID=CGI_10025181; scaffold43798 WUBlastX DNA_Sola 132877 133116 140 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_Sola 133137 133217 41 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_Sola 133826 134041 163 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_L1-Tx1 631673 631864 34 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold1605 WUBlastX LINE_L1-Tx1 455754 456011 25 - . . . . . -1 -1 -1 . . . scaffold36202 WUBlastX LTR_Gypsy-Gmr1 28102 28365 60 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_Jockey 53500 53625 38 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 1421178 1422281 161 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 1422251 1422460 53 - . . . . . -1 -1 -1 . . . scaffold41008 WUBlastX LINE_Penelope 34365 34418 22 - . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 65686 65760 34 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy-Cigr 129490 129825 99 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold378 WUBlastX LTR_Ngaro 313308 313679 185 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 228320 229093 106 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Gypsy 255155 256213 948 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 52005 52376 227 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 52372 52551 101 - . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_Sola 23343 23663 160 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 636073 636330 58 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 637053 637502 100 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L1 3202 3642 44 - . . . . . -1 -1 -1 . . . C24726 WUBlastX DNA_Sola 389 820 197 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LINE_CR1-L2 91553 92557 199 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LTR_Ngaro 120293 121021 248 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 100275 100478 154 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 100772 101446 206 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX DNA_Harbinger 221864 222679 317 - . . scaffold447 GLEAN mRNA 216035 225243 0.990731 + . ID=CGI_10014225; scaffold626 WUBlastX LTR_Gypsy 383002 383151 34 - . . . . . -1 -1 -1 . . . scaffold42070 WUBlastX DNA_IS4EU 104391 105293 284 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_IS4EU 63452 64354 284 + . . . . . -1 -1 -1 . . . scaffold1624 WUBlastX DNA_Maverick 77149 77625 328 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Ngaro 170824 171834 237 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_TcMar-Tc1 672782 673657 227 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_L2 362594 363088 228 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_L2 363037 363354 60 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L1 801555 801845 51 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 60634 60762 59 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 61990 62181 131 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_IS4EU 599141 599503 120 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Gypsy 990326 990838 252 + . . scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold1788 WUBlastX DNA_Maverick 57161 57691 134 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1123 WUBlastX LTR_Gypsy-Cigr 136849 138021 323 + . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_L1-Tx1 7414 7479 30 - . . . . . -1 -1 -1 . . . C33730 WUBlastX LINE_L1-Tx1 13752 14108 103 + . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX DNA_Academ 42988 43506 292 - . . scaffold1757 GLEAN mRNA 39979 43464 0.907643 - . ID=CGI_10005112; scaffold1757 WUBlastX DNA_Academ 42988 43506 292 - . . scaffold1757 GLEAN mRNA 43472 43939 0.579796 - . ID=CGI_10005113; scaffold492 WUBlastX DNA_Harbinger 81741 82040 84 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 310799 311269 183 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 318165 318635 183 + . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX LINE_Penelope 339503 340153 209 + . . scaffold43964 GLEAN mRNA 338636 342902 1 + . ID=CGI_10014661; scaffold601 WUBlastX LTR_Gypsy 1143470 1143685 106 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 201172 201363 43 + . . . . . -1 -1 -1 . . . scaffold40614 WUBlastX LTR_DIRS 64043 64543 283 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold606 WUBlastX LTR_Gypsy 295797 296414 211 + . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 28144 29436 352 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LINE_L1-Tx1 142342 143871 200 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 132500 133192 244 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 133312 133497 64 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-BovB 14301 14729 153 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold129 WUBlastX LINE_L1 45577 46065 126 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-BovB 107942 108175 174 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Pao 65362 65520 23 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold43 WUBlastX LTR_Gypsy 425500 425565 22 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 426553 426882 197 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 426905 427051 90 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy 204074 204214 42 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 266712 266876 60 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 794433 794627 52 + . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_Maverick 31648 32241 399 - . . . . . -1 -1 -1 . . . C28030 WUBlastX DNA_Maverick 2594 3163 382 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_CR1 345086 345349 33 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_hAT-Tip100 214759 215142 133 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Gypsy 518932 520278 146 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_Penelope 356193 356870 237 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 1305097 1305786 210 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 857512 857718 56 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX DNA_Sola 112896 113159 109 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX DNA_Sola 114294 114686 46 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 31067 31948 332 + . . scaffold58 GLEAN mRNA 27366 37042 1 - . ID=CGI_10023129; scaffold43442 WUBlastX LINE_Penelope 230851 231195 250 - . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX LINE_Penelope 231195 232067 136 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX LTR_Gypsy 165451 165633 22 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Gypsy-Cigr 669190 670461 296 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Gypsy-Cigr 670790 670975 135 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Harbinger 403567 404121 299 - . . . . . -1 -1 -1 . . . C33256 WUBlastX DNA_TcMar-Tc1 6399 6821 182 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_CR1-L2 82194 84041 226 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_DIRS 281127 281471 89 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Ngaro 149691 150116 113 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1 265347 265556 22 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_L1-Tx1 70923 72005 294 - . . . . . -1 -1 -1 . . . scaffold43302 WUBlastX DNA_PiggyBac 60345 60905 162 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold36806 WUBlastX LINE_L1 12266 12910 142 - . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_RTE-X 7853 8206 75 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold377 WUBlastX LTR_Ngaro 590888 591808 368 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Gypsy 103903 104904 435 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; C23836 WUBlastX LTR_Ngaro 1247 2185 337 - . . . . . -1 -1 -1 . . . C29438 WUBlastX LINE_RTE-X 4058 4435 112 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold38136 WUBlastX DNA_Maverick 773 1561 480 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Gypsy 178756 179334 121 - . . . . . -1 -1 -1 . . . scaffold409 WUBlastX DNA_TcMar-Marin 60242 60427 96 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold409 WUBlastX DNA_TcMar-Marin 60555 60911 168 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold409 WUBlastX DNA_TcMar-Marin 61093 61497 234 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold1838 WUBlastX LINE_RTE-X 365710 367221 424 + . . scaffold1838 GLEAN mRNA 361613 368125 0.631432 + . ID=CGI_10014266; scaffold502 WUBlastX LTR_Gypsy 182298 182468 37 + . . . . . -1 -1 -1 . . . C28766 WUBlastX LTR_Gypsy 4656 5879 521 - . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX LINE_L1 30717 30881 41 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 234402 234779 24 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 462625 463557 107 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 26452 27654 499 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 95449 95946 206 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 95906 96703 292 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_RTE-X 715 939 90 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX DNA_TcMar-Tc1 163041 163442 227 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_DIRS 632229 632717 239 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_DIRS 633678 633920 65 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 103055 103408 33 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_CR1-L2 477537 477842 31 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold40560 WUBlastX LINE_L1-Tx1 33755 34243 137 - . . . . . -1 -1 -1 . . . scaffold40560 WUBlastX LINE_L1-Tx1 34281 35423 263 - . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_RTE-BovB 281061 281522 341 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_L2 338919 340367 390 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 515817 516194 119 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Gypsy 25271 25405 45 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 365719 366159 67 - . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LINE_L1-Tx1 49502 49648 23 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_Gypsy-Cigr 417932 418708 516 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_Gypsy-Cigr 418696 418893 142 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 996302 996475 29 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_RTE-BovB 427632 427889 222 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_RTE-BovB 427858 428238 278 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_RTE-BovB 428309 428596 161 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 959574 959684 51 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1072854 1073057 69 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074147 1074419 51 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold1187 WUBlastX LTR_Gypsy 47286 47948 62 + . . . . . -1 -1 -1 . . . scaffold839 WUBlastX LTR_Gypsy 89599 90459 718 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1-Tx1 327726 328037 171 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1-Tx1 327985 328740 123 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1-Tx1 328742 328969 184 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 53392 53544 82 - . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Ngaro 58772 58969 75 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 59240 59566 229 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold752 WUBlastX LTR_Gypsy 226925 227059 29 - . . . . . -1 -1 -1 . . . scaffold752 WUBlastX LTR_Gypsy 227022 227780 334 - . . . . . -1 -1 -1 . . . C28702 WUBlastX LTR_Gypsy 5038 5325 257 - . . . . . -1 -1 -1 . . . scaffold1600 WUBlastX LINE_RTE-BovB 194965 196134 756 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold36 WUBlastX LTR_Gypsy 2969 3130 61 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold33610 WUBlastX LTR_Gypsy 13054 13329 82 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_L1 25619 26086 163 - . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy 66694 66807 31 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1301 WUBlastX LTR_Pao 1042277 1042573 146 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LTR_Gypsy 352911 353207 28 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold35854 WUBlastX LINE_L1 26645 27445 306 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 442265 443356 834 + . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LINE_RTE-X 378940 379884 245 - . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX DNA_TcMar-Fot1 150514 152358 734 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Sola 1417407 1419107 773 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_L2 450512 451234 425 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy-Cigr 903628 904887 767 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 677171 677692 270 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_RTE-X 287178 287393 40 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_RTE-X 287654 287788 66 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_RTE-X 287769 288674 541 - . . . . . -1 -1 -1 . . . scaffold814 WUBlastX LTR_Ngaro 86503 88095 813 - . . scaffold814 GLEAN mRNA 83997 88485 0.997298 + . ID=CGI_10008194; scaffold541 WUBlastX LINE_RTE-X 263531 265342 727 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LTR_DIRS 414607 415302 388 + . . scaffold588 GLEAN mRNA 413724 423614 0.849231 + . ID=CGI_10016228; scaffold588 WUBlastX LTR_DIRS 415286 416479 409 + . . scaffold588 GLEAN mRNA 413724 423614 0.849231 + . ID=CGI_10016228; scaffold1838 WUBlastX LINE_RTE-X 333962 335248 461 - . . scaffold1838 GLEAN mRNA 332958 349598 0.563165 + . ID=CGI_10014264; scaffold1219 WUBlastX LINE_L1-Tx1 773727 775379 250 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_L1-Tx1 775725 776288 178 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LTR_DIRS 108404 108877 287 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LTR_DIRS 109489 110304 380 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LTR_DIRS 110309 110506 167 - . . . . . -1 -1 -1 . . . scaffold44064 WUBlastX LINE_CR1 214815 215351 21 + . . scaffold44064 GLEAN mRNA 201756 215782 0.297034 - . ID=CGI_10016763; scaffold413 WUBlastX LINE_L2 233362 233427 20 + . . . . . -1 -1 -1 . . . scaffold1103 WUBlastX DNA_MuDR 45398 45757 64 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Copia 236179 236250 22 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy-Cigr 116773 117045 51 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX DNA_Chapaev 33988 34623 53 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX DNA_Chapaev 20488 21123 52 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX DNA_Chapaev 378144 378779 53 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_CR1 582177 582389 26 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_CR1 582383 582652 41 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Ngaro 1017756 1017878 55 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Ngaro 362161 362304 66 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L2 945038 945100 20 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LTR_Gypsy 126332 126940 63 - . . . . . -1 -1 -1 . . . C22930 WUBlastX LTR_Gypsy 49 243 80 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-BovB 176627 176791 44 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LTR_Gypsy 134158 134340 43 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_Gypsy 36227 36325 37 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Harbinger 220345 220800 26 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_Harbinger 263259 263363 30 + . . scaffold794 GLEAN mRNA 251355 264307 1 + . ID=CGI_10017152; scaffold41700 WUBlastX DNA_Harbinger 48628 48912 67 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Harbinger 861724 861936 75 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_Harbinger 296461 296673 73 + . . scaffold1138 GLEAN mRNA 292871 298316 0.998782 - . ID=CGI_10015377; scaffold332 WUBlastX LINE_I 176334 176615 39 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Marin 186273 186431 36 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 127016 127192 57 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1532 WUBlastX DNA_IS4EU 485793 485969 57 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_hAT-Tip100 714809 715012 41 + . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_L1 56508 56945 32 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_Kolobok 436728 437252 22 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX DNA_Kolobok 754934 755098 50 - . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_L1 190316 190678 56 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_L1-Tx1 73015 73506 44 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; C24582 WUBlastX LINE_L1 258 608 34 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_L1 33744 34145 56 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_TcMar-Fot1 485163 485354 83 + . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX DNA_TcMar-Marin 75715 76002 42 - . . . . . -1 -1 -1 . . . scaffold38654 WUBlastX LINE_Penelope 35786 36136 45 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_Penelope 643747 644151 23 - . . scaffold146 GLEAN mRNA 638309 652967 0.499837 - . ID=CGI_10024916; scaffold1295 WUBlastX LTR_ERVK 2571 2747 38 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_ERVK 82360 82536 38 + . . . . . -1 -1 -1 . . . scaffold40194 WUBlastX LINE_I-Nimb 52811 52987 68 - . . . . . -1 -1 -1 . . . scaffold40080 WUBlastX LINE_RTE-BovB 24649 25263 45 + . . scaffold40080 GLEAN mRNA 23516 25927 0.997813 - . ID=CGI_10003844; scaffold37148 WUBlastX LINE_RTE-BovB 29429 29527 21 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold36808 WUBlastX LINE_RTE-X 35358 35486 40 + . . scaffold36808 GLEAN mRNA 30018 36587 1 - . ID=CGI_10002147; scaffold421 WUBlastX LINE_RTE-X 247404 247622 64 - . . scaffold421 GLEAN mRNA 232502 254015 0.999281 - . ID=CGI_10012158; scaffold678 WUBlastX LINE_RTE-X 225118 225375 55 - . . scaffold678 GLEAN mRNA 217063 237953 0.926398 - . ID=CGI_10026343; scaffold43964 WUBlastX LINE_RTE-X 134806 135075 37 - . . scaffold43964 GLEAN mRNA 134421 152513 0.996559 - . ID=CGI_10014643; scaffold57 WUBlastX LINE_RTE-X 552812 553405 36 + . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_RTE-X 388446 388550 52 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 1570633 1570812 39 - . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX DNA_Maverick 49099 49173 23 - . . scaffold1440 GLEAN mRNA 46324 69343 0.667435 - . ID=CGI_10008354; scaffold964 WUBlastX LTR_Gypsy 54393 54479 25 - . . . . . -1 -1 -1 . . . scaffold1200 WUBlastX LINE_RTE-BovB 36526 36870 29 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_R1 88649 88789 20 + . . scaffold395 GLEAN mRNA 85082 89781 0.998176 + . ID=CGI_10013969; scaffold964 WUBlastX LINE_RTE-X 139457 139729 65 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 992922 993194 65 - . . . . . -1 -1 -1 . . . scaffold250 WUBlastX LTR_Ngaro 30459 30605 47 + . . . . . -1 -1 -1 . . . C31738 WUBlastX LTR_Ngaro 535 870 20 + . . . . . -1 -1 -1 . . . C31738 WUBlastX LTR_Ngaro 902 1072 25 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_TcMar-Marin 564678 564866 64 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold625 WUBlastX LINE_L1-Tx1 456671 456814 29 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX DNA_TcMar-Tc1 908143 908385 75 - . . scaffold784 GLEAN mRNA 903046 922274 0.999676 + . ID=CGI_10024450; scaffold1819 WUBlastX LINE_L1-Tx1 172764 172967 75 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L1-Tx1 1140780 1140971 41 + . . scaffold1024 GLEAN mRNA 1112754 1144737 0.704183 + . ID=CGI_10028569; scaffold22 WUBlastX DNA_TcMar-Marin 90329 90520 51 + . . scaffold22 GLEAN mRNA 89502 123774 0.856288 - . ID=CGI_10028828; scaffold22 WUBlastX DNA_TcMar-Marin 90897 90992 27 + . . scaffold22 GLEAN mRNA 89502 123774 0.856288 - . ID=CGI_10028828; scaffold102 WUBlastX LTR_Gypsy 1096574 1096699 35 + . . scaffold102 GLEAN mRNA 1095942 1101722 0.998596 + . ID=CGI_10028470; scaffold1314 WUBlastX LINE_L2 83119 83550 46 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_CR1-L2 92948 93190 38 + . . . . . -1 -1 -1 . . . scaffold37358 WUBlastX LINE_CR1 40182 40700 33 - . . . . . -1 -1 -1 . . . scaffold34574 WUBlastX LINE_CR1-L2 8527 8871 39 + . . . . . -1 -1 -1 . . . scaffold36482 WUBlastX LINE_CR1-L2 6155 6265 35 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Gypsy 516444 516569 51 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_Crypton 726398 726799 67 - . . . . . -1 -1 -1 . . . scaffold39120 WUBlastX LTR_Ngaro 46014 46286 81 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold43076 WUBlastX LINE_Dong-R4 11932 12126 37 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_Gypsy 190659 190697 30 + . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1295 WUBlastX LTR_Gypsy 1879 1944 37 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 81668 81733 37 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_R2-Hero 446383 446643 57 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX DNA_IS4EU 103473 103694 80 + . . . . . -1 -1 -1 . . . scaffold41472 WUBlastX DNA_Harbinger 15041 15217 54 + . . scaffold41472 GLEAN mRNA 5767 21457 0.999674 - . ID=CGI_10005140; scaffold5 WUBlastX LINE_Penelope 318518 318877 63 - . . . . . -1 -1 -1 . . . scaffold532 WUBlastX DNA_TcMar-Marin 263714 263881 90 + . . . . . -1 -1 -1 . . . scaffold40994 WUBlastX LINE_L1 98780 99349 29 + . . . . . -1 -1 -1 . . . scaffold33640 WUBlastX LINE_RTE-X 9265 9525 51 - . . . . . -1 -1 -1 . . . scaffold1052 WUBlastX LINE_RTE-X 80399 80563 98 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 146519 146776 60 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX DNA_TcMar-Pogo 113065 113163 48 + . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 2061 2207 39 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_RTE-X 50062 50460 26 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_RTE-X 307454 307654 67 - . . scaffold44054 GLEAN mRNA 306696 317315 0.999734 + . ID=CGI_10016171; scaffold34202 WUBlastX LINE_RTE-X 9773 9949 49 + . . scaffold34202 GLEAN mRNA 527 10844 1 - . ID=CGI_10001227; scaffold392 WUBlastX LINE_RTE-X 341965 342345 57 - . . scaffold392 GLEAN mRNA 334083 342178 0.54474 + . ID=CGI_10024214; scaffold37554 WUBlastX LINE_RTE-X 3377 3490 61 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-X 120006 120215 59 + . . . . . -1 -1 -1 . . . scaffold34710 WUBlastX LINE_RTE-X 19064 19210 49 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_RTE-X 130387 130554 30 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX LINE_RTE-X 365314 365394 38 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LINE_RTE-X 627555 627653 34 + . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX LINE_RTE-X 9869 10171 36 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Gypsy 516993 517277 30 - . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LTR_Copia 133265 133810 45 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX DNA_TcMar-Tc1 349329 349607 72 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 351207 351485 72 + . . scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold563 WUBlastX DNA_TcMar-Marin 6361 6522 23 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_Sola 473798 474034 88 - . . scaffold583 GLEAN mRNA 471956 505704 0.559717 + . ID=CGI_10023626; scaffold457 WUBlastX LTR_Ngaro 395404 395724 76 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_TcMar-Tc1 346496 346996 56 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_TcMar-Tc1 261043 261372 34 + . . scaffold43920 GLEAN mRNA 253407 262803 0.999991 + . ID=CGI_10013995; C29980 WUBlastX LINE_CR1-L2 6105 6290 37 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_CR1-L2 199505 199708 50 + . . scaffold471 GLEAN mRNA 193246 236257 0.137865 + . ID=CGI_10027007; scaffold736 WUBlastX LTR_Caulimoviru 49737 50012 23 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX DNA_Merlin 143864 144232 47 + . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LTR_Ngaro 42534 42977 72 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1604995 1605258 77 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold38374 WUBlastX LTR_Ngaro 8427 8516 26 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold43358 WUBlastX DNA_Crypton 243052 243360 101 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 808045 808092 21 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_Jockey 555062 555301 40 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold707 WUBlastX LTR_Gypsy 40844 41017 109 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold1532 WUBlastX LTR_Gypsy 217307 217417 22 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Gypsy 553284 553412 20 + . . scaffold413 GLEAN mRNA 553173 557512 0.824889 + . ID=CGI_10022810; scaffold101 WUBlastX LINE_L1-Tx1 385281 385793 34 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_Penelope 185680 185871 38 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-X 219120 219254 34 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX DNA_TcMar-Fot1 78979 79071 20 + . . . . . -1 -1 -1 . . . scaffold1256 WUBlastX LTR_Ngaro 90459 90830 43 + . . scaffold1256 GLEAN mRNA 90444 103764 0.997922 + . ID=CGI_10005430; scaffold1256 WUBlastX LTR_Ngaro 91626 91703 31 + . . scaffold1256 GLEAN mRNA 90444 103764 0.997922 + . ID=CGI_10005430; scaffold41968 WUBlastX LINE_RTE-X 79568 79735 32 - . . . . . -1 -1 -1 . . . scaffold912 WUBlastX LINE_L1-Tx1 36263 36445 93 - . . scaffold912 GLEAN mRNA 34749 48869 0.492255 - . ID=CGI_10002926; scaffold200 WUBlastX LINE_L2 92454 92873 86 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_CR1-L2 172120 172242 29 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_RTE 402972 403022 24 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold508 WUBlastX LTR_Gypsy 16294 17358 80 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold1401 WUBlastX LINE_L2 6338 6622 84 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold1745 WUBlastX DNA_Crypton 104404 104763 82 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Crypton 1082 1477 58 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Crypton 2008 2256 36 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy 47657 48184 85 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_IS4EU 558205 558291 39 + . . scaffold1599 GLEAN mRNA 554525 590190 0.924419 + . ID=CGI_10027152; scaffold531 WUBlastX DNA_Harbinger 357450 357797 91 + . . . . . -1 -1 -1 . . . scaffold41766 WUBlastX LINE_L1-Tx1 94227 94478 54 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LINE_L1 196832 197116 68 + . . . . . -1 -1 -1 . . . scaffold935 WUBlastX DNA_TcMar-Tc2 7750 8298 94 + . . scaffold935 GLEAN mRNA 8095 8319 0.998439 + . ID=CGI_10005288; scaffold659 WUBlastX DNA_Maverick 85779 86126 89 - . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_PiggyBac 172826 173050 29 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 164412 164639 77 + . . scaffold1149 GLEAN mRNA 149088 177869 0.31262 + . ID=CGI_10023454; scaffold1123 WUBlastX LINE_RTE-X 306900 306959 25 + . . . . . -1 -1 -1 . . . scaffold39198 WUBlastX LINE_L1-Tx1 27362 27733 47 - . . . . . -1 -1 -1 . . . scaffold39198 WUBlastX LINE_L1-Tx1 34955 35326 47 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX DNA_TcMar-Tc1 111157 111381 72 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Tc1 743740 744105 59 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LINE_L2 192147 192671 91 - . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold1031 WUBlastX DNA_Crypton 533392 533628 57 + . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX DNA_Crypton 534325 534561 59 + . . . . . -1 -1 -1 . . . C34010 WUBlastX LTR_Ngaro 10024 10284 107 + . . . . . -1 -1 -1 . . . C34562 WUBlastX LTR_Ngaro 9773 10000 101 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_DIRS 557760 558521 74 - . . . . . -1 -1 -1 . . . scaffold38058 WUBlastX LTR_Gypsy 5416 5667 86 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold1121 WUBlastX DNA_hAT-Tip100 140767 140970 98 - . . scaffold1121 GLEAN mRNA 136074 147948 0.722367 - . ID=CGI_10006507; scaffold442 WUBlastX DNA_IS4EU 48325 48423 61 + . . . . . -1 -1 -1 . . . scaffold190 WUBlastX DNA_Kolobok-IS4 311051 311188 24 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Kolobok-IS4 69276 69509 110 - . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; C26430 WUBlastX LTR_Gypsy 619 978 110 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Kolobok-IS4 683369 684136 58 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1343007 1343282 75 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_Penelope 126528 127127 63 + . . . . . -1 -1 -1 . . . scaffold1247 WUBlastX LINE_L1-Tx1 112751 113146 83 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold392 WUBlastX DNA_Kolobok 895627 896070 30 + . . scaffold392 GLEAN mRNA 895046 896088 1 + . ID=CGI_10024238; scaffold1462 WUBlastX LINE_RTE-BovB 306593 306739 70 + . . scaffold1462 GLEAN mRNA 305995 331618 0.999054 - . ID=CGI_10014383; scaffold509 WUBlastX LINE_RTE-BovB 206474 206647 41 - . . scaffold509 GLEAN mRNA 180574 211213 0.998586 - . ID=CGI_10018644; C27830 WUBlastX LINE_RTE-X 4530 4775 36 + . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_RTE-X 32455 32685 65 + . . scaffold992 GLEAN mRNA 31527 46122 0.937041 - . ID=CGI_10007504; scaffold113 WUBlastX LINE_RTE-X 477226 477372 47 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 786872 787006 46 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 787285 787506 50 + . . . . . -1 -1 -1 . . . C30864 WUBlastX LINE_L1-Tx1 4432 4581 79 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LINE_CR1-L2 81449 81610 99 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_Jockey 233180 233962 99 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold257 WUBlastX LTR_Gypsy-Cigr 1158035 1158172 58 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 644446 645294 72 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Ngaro 537331 537687 70 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Ngaro 62940 63419 58 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 54250 54501 106 - . . . . . -1 -1 -1 . . . scaffold253 WUBlastX LTR_Gypsy 1459 1764 35 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX LTR_Gypsy 101322 101465 61 + . . . . . -1 -1 -1 . . . scaffold42634 WUBlastX LINE_Jockey 155196 155261 28 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_hAT-Ac 596590 597048 135 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_TcMar-Tc1 59012 59203 57 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LTR_Ngaro 145314 145505 58 - . . . . . -1 -1 -1 . . . scaffold1028 WUBlastX LINE_RTE-X 42039 42266 21 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold419 WUBlastX DNA_PiggyBac 39656 39910 129 + . . scaffold419 GLEAN mRNA 39110 43712 0.992133 + . ID=CGI_10028318; scaffold86 WUBlastX DNA_Maverick 1446466 1446678 134 + . . . . . -1 -1 -1 . . . scaffold36816 WUBlastX LINE_RTE-BovB 872 1429 72 + . . . . . -1 -1 -1 . . . scaffold36624 WUBlastX LINE_RTE-X 34887 35000 26 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 241061 241219 105 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 214789 214947 105 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LINE_RTE-X 178005 178190 94 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold816 WUBlastX LTR_Gypsy 374522 374917 47 - . . . . . -1 -1 -1 . . . scaffold31308 WUBlastX LTR_Ngaro 8769 8960 135 - . . . . . -1 -1 -1 . . . scaffold865 WUBlastX LTR_Ngaro 19112 19837 101 - . . scaffold865 GLEAN mRNA 7384 21120 0.465325 - . ID=CGI_10002639; scaffold43660 WUBlastX LTR_Ngaro 245924 246067 109 + . . scaffold43660 GLEAN mRNA 243562 254433 0.99966 - . ID=CGI_10011671; scaffold1703 WUBlastX LTR_Gypsy 170546 170695 36 - . . . . . -1 -1 -1 . . . scaffold193 WUBlastX LTR_Gypsy-Cigr 248508 248777 75 - . . scaffold193 GLEAN mRNA 245779 268914 0.906792 - . ID=CGI_10015232; scaffold1659 WUBlastX DNA_Harbinger 6608 6754 24 + . . scaffold1659 GLEAN mRNA 4365 18372 0.650917 + . ID=CGI_10001326; scaffold614 WUBlastX DNA_Harbinger 311719 311991 99 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_NOF? 113756 114112 81 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L1 1086880 1087218 128 - . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L1 826901 826954 20 + . . . . . -1 -1 -1 . . . scaffold32550 WUBlastX LINE_RTE-X 3120 3431 125 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LINE_RTE-X 92456 92932 49 - . . . . . -1 -1 -1 . . . scaffold42850 WUBlastX LINE_RTE-X 10726 11046 105 + . . scaffold42850 GLEAN mRNA 3662 13171 0.999996 + . ID=CGI_10007918; scaffold672 WUBlastX LINE_RTE-X 147677 148117 107 - . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LTR_Gypsy 77593 78051 50 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LTR_Copia 171215 171262 21 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_CR1-L2 68637 69254 71 + . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_L2 274978 275391 92 - . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LTR_Gypsy 13869 14195 20 + . . . . . -1 -1 -1 . . . C32918 WUBlastX DNA_TcMar-Fot1 9351 9407 40 + . . . . . -1 -1 -1 . . . C32406 WUBlastX LINE_RTE-BovB 9560 9805 85 - . . . . . -1 -1 -1 . . . C32406 WUBlastX LINE_RTE-BovB 9807 9932 39 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1 337378 337449 22 + . . . . . -1 -1 -1 . . . C21812 WUBlastX LINE_CR1-L2 1235 1534 111 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 634256 635005 36 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 375334 375453 35 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_Jockey 1217556 1217798 30 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 12998 13519 135 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 276242 276838 121 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold40010 WUBlastX DNA_Kolobok-IS4 77820 78173 87 + . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX DNA_Kolobok-IS4 78312 78401 47 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX DNA_IS4EU 118446 118694 43 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX DNA_IS4EU 119007 119327 40 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_RTE-BovB 206647 206808 54 - . . scaffold509 GLEAN mRNA 180574 211213 0.998586 - . ID=CGI_10018644; scaffold126 WUBlastX LINE_I 322523 322588 21 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_RTE-X 386199 386396 22 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_RTE-X 148390 148797 106 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold1533 WUBlastX LINE_RTE-X 206070 206312 45 - . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX DNA_Maverick 7178 7873 99 + . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_Gypsy 119839 120339 130 - . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX LINE_L1-Tx1 3811 4365 100 + . . scaffold1663 GLEAN mRNA 2082 14069 0.985105 + . ID=CGI_10009862; scaffold271 WUBlastX LINE_L1-Tx1 52746 52850 20 + . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_L1-Tx1 62676 63461 127 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_CR1 27421 27912 143 - . . scaffold38626 GLEAN mRNA 19577 33145 1 - . ID=CGI_10002868; scaffold377 WUBlastX LINE_CR1-L2 539539 539889 137 - . . . . . -1 -1 -1 . . . scaffold40150 WUBlastX LINE_L2 71516 71965 105 - . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX LTR_Gypsy 35406 36137 147 + . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_R2-Hero 123609 123815 70 + . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold895 WUBlastX DNA_Harbinger 177638 177778 20 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 430255 430347 29 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_Penelope 39493 39729 62 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Maverick 155980 156495 132 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LINE_RTE-X 594 920 120 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 86867 87142 38 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 87294 87425 50 - . . . . . -1 -1 -1 . . . C30816 WUBlastX LINE_RTE-X 7690 7896 36 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Tc1 222914 223447 115 + . . . . . -1 -1 -1 . . . scaffold1873 WUBlastX LINE_L1-Tx1 64771 65220 103 + . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1703 WUBlastX LTR_Pao 320516 320779 41 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_CR1 265525 266709 916 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_Gypsy 673915 674409 293 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 40677 40922 85 - . . . . . -1 -1 -1 . . . C31762 WUBlastX LINE_CR1 8438 8611 60 + . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_DIRS 7692 8381 104 + . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_DIRS 8506 10359 751 + . . . . . -1 -1 -1 . . . scaffold37286 WUBlastX LINE_L1-Tx1 37839 40001 852 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Sola 432026 432736 278 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Sola 432897 433109 115 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Sola 433223 433420 27 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Sola 434632 434790 61 + . . . . . -1 -1 -1 . . . scaffold387 WUBlastX LINE_L2 78349 78450 27 - . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX LINE_L2 56631 57086 127 + . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX LINE_L2 57122 57277 49 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LINE_CR1 127593 127637 20 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold413 WUBlastX LTR_Pao 613585 613641 30 + . . scaffold413 GLEAN mRNA 608859 620642 0.999023 - . ID=CGI_10022819; scaffold413 WUBlastX LTR_Pao 613585 613641 30 + . . scaffold413 GLEAN mRNA 613461 617471 1 + . ID=CGI_10022820; scaffold413 WUBlastX LTR_Pao 613869 614033 146 + . . scaffold413 GLEAN mRNA 608859 620642 0.999023 - . ID=CGI_10022819; scaffold413 WUBlastX LTR_Pao 613869 614033 146 + . . scaffold413 GLEAN mRNA 613461 617471 1 + . ID=CGI_10022820; C18064 WUBlastX LTR_Gypsy 36 404 178 + . . . . . -1 -1 -1 . . . scaffold26 WUBlastX LTR_Gypsy 38370 38705 150 - . . scaffold26 GLEAN mRNA 37184 39443 0.783788 + . ID=CGI_10002298; scaffold1423 WUBlastX LTR_Ngaro 728530 728958 95 - . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold332 WUBlastX RC_Helitron 272800 273027 77 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_IS4EU 463138 463443 117 - . . scaffold99 GLEAN mRNA 460652 481021 0.928915 - . ID=CGI_10021208; scaffold754 WUBlastX DNA_IS4EU 140996 141523 173 + . . scaffold754 GLEAN mRNA 139769 141980 1 - . ID=CGI_10014067; scaffold960 WUBlastX LINE_L1 332513 333304 127 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Penelope 177935 178405 103 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_Penelope 673842 674129 106 + . . . . . -1 -1 -1 . . . scaffold766 WUBlastX LINE_L1 64203 64355 58 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 778840 779217 118 - . . scaffold619 GLEAN mRNA 775777 792970 0.999676 - . ID=CGI_10025785; scaffold86 WUBlastX LINE_L1-Tx1 1594464 1595039 92 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LINE_L1-Tx1 114924 115148 90 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LINE_L1-Tx1 115235 115393 81 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 5254 6333 374 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_Pao 87770 88114 305 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 678152 679270 264 + . . . . . -1 -1 -1 . . . scaffold37732 WUBlastX LINE_L1-Tx1 5 2209 812 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LTR_Gypsy 124524 127148 711 - . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX LTR_Gypsy 33922 34524 234 - . . . . . -1 -1 -1 . . . scaffold771 WUBlastX LINE_L2 224145 224522 160 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Gypsy 665229 666002 173 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 609254 609505 37 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Harbinger 220390 220719 168 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX DNA_hAT-hATw 81385 81549 27 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc2 1627055 1627699 113 - . . . . . -1 -1 -1 . . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6590 6841 94 + . . . . . -1 -1 -1 . . . scaffold720 WUBlastX LINE_Penelope 15 350 126 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX DNA_Merlin 275955 276023 40 - . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX DNA_TcMar-Tc1 26071 26412 45 + . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 17088 17792 540 + . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 18267 18458 108 + . . . . . -1 -1 -1 . . . scaffold37850 WUBlastX LTR_Gypsy 18228 19268 567 - . . . . . -1 -1 -1 . . . scaffold37850 WUBlastX LTR_Gypsy 19267 20172 541 - . . . . . -1 -1 -1 . . . scaffold37668 WUBlastX LTR_Ngaro 45535 46953 1166 - . . . . . -1 -1 -1 . . . scaffold1664 WUBlastX LTR_Ngaro 44081 45658 1021 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_CR1 78636 79694 913 + . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX LINE_RTE-BovB 141424 142677 897 - . . scaffold1884 GLEAN mRNA 133392 150395 0.998261 + . ID=CGI_10012014; scaffold363 WUBlastX DNA_Academ 445703 445849 25 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Gypsy 12066 12167 35 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1 98954 99949 60 - . . . . . -1 -1 -1 . . . scaffold1612 WUBlastX DNA_Sola 10108 10434 30 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LTR_Gypsy 209235 209543 91 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LTR_Gypsy 210217 210432 54 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LTR_Gypsy 210708 211283 473 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 99349 100077 460 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy-Cigr 40206 40439 121 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L1-Tx1 146606 147595 139 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L1-Tx1 147622 148569 547 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L1-Tx1 149054 149947 230 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy-Cigr 419515 420090 160 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_CR1-L2 230979 231617 135 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_CR1-L2 192294 192440 33 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LINE_L2 47572 48198 143 + . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold40492 WUBlastX LINE_CR1 89759 90247 73 - . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX LTR_Gypsy 3895 3975 22 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_DIRS 96039 96473 153 + . . . . . -1 -1 -1 . . . scaffold43396 WUBlastX DNA_Crypton 114317 114796 152 + . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LINE_L2 7035 7763 128 + . . scaffold40786 GLEAN mRNA 7257 8429 0.999999 + . ID=CGI_10004439; scaffold565 WUBlastX LTR_Ngaro 837 1235 158 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Harbinger 466158 466568 151 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 51948 52163 35 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1 738164 738523 20 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LINE_RTE-X 230434 230649 64 - . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_RTE-X 148939 149178 29 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold787 WUBlastX LINE_RTE-X 209950 210402 113 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_RTE-X 52659 53195 54 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LTR_Gypsy 60176 62074 651 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LTR_Gypsy 62586 63500 423 + . . . . . -1 -1 -1 . . . scaffold37006 WUBlastX LINE_CR1 408 1088 104 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_Penelope 87887 88711 104 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 933430 933534 40 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1-Tx1 840070 840699 117 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1-Tx1 166645 167325 143 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 368482 368628 32 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 368847 369023 43 + . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_RTE-X 48672 49094 172 - . . . . . -1 -1 -1 . . . scaffold64 WUBlastX DNA_Harbinger 117300 117443 65 + . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX LTR_DIRS 36380 36694 181 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Ngaro 167095 167490 136 + . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LINE_CR1 218494 218571 41 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 1340375 1341076 552 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX RC_Helitron 223197 223457 83 + . . . . . -1 -1 -1 . . . scaffold1672 WUBlastX LTR_DIRS 58431 60407 1331 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold38678 WUBlastX LINE_CR1 17118 17684 182 - . . . . . -1 -1 -1 . . . scaffold44064 WUBlastX LINE_L2 394332 394778 156 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_LOA 243911 243991 25 - . . scaffold6 GLEAN mRNA 243521 244840 0.993546 - . ID=CGI_10022303; scaffold88 WUBlastX LTR_Gypsy 223682 224059 70 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Gypsy 476434 476898 167 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold1599 WUBlastX DNA_IS4EU 775461 776111 128 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LTR_Gypsy 239996 240652 203 - . . . . . -1 -1 -1 . . . scaffold38558 WUBlastX LINE_L1-Tx1 56450 57070 92 + . . . . . -1 -1 -1 . . . scaffold40 WUBlastX LINE_Penelope 8050 8436 34 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 1404015 1404338 121 - . . scaffold1009 GLEAN mRNA 1385958 1409839 0.363333 + . ID=CGI_10028796; scaffold38532 WUBlastX LTR_Ngaro 55749 56339 171 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold12 WUBlastX LINE_L1-Tx1 209491 209592 35 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_L1-Tx1 209655 210167 95 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_L1-Tx1 210152 210265 31 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_L1-Tx1 5574 5645 23 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Maverick 127250 129076 1156 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_DIRS 490264 490437 61 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_Harbinger 670658 670909 49 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Ngaro 196398 196529 35 + . . . . . -1 -1 -1 . . . C25792 WUBlastX LTR_Ngaro 2401 2892 220 + . . . . . -1 -1 -1 . . . scaffold35268 WUBlastX DNA_TcMar-Marin 15584 15865 132 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_RTE-X 212309 212785 117 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_RTE-X 212793 212915 69 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_RTE-X 213255 213359 23 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_Sola 308997 309731 205 + . . scaffold448 GLEAN mRNA 309246 309755 0.48146 + . ID=CGI_10024939; scaffold361 WUBlastX LINE_L1-Tx1 501814 502401 122 - . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LINE_L1-Tx1 192788 193408 83 - . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX LINE_RTE-BovB 141281 141418 59 - . . scaffold1884 GLEAN mRNA 133392 150395 0.998261 + . ID=CGI_10012014; scaffold610 WUBlastX LTR_Pao 293175 293456 128 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LTR_Pao 213878 214195 44 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold1101 WUBlastX LINE_L2 151037 151522 27 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold457 WUBlastX LINE_RTE 365217 366107 48 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold141 WUBlastX DNA_Harbinger 127340 127462 43 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 429139 429561 150 + . . . . . -1 -1 -1 . . . scaffold37772 WUBlastX DNA_Maverick 22815 22928 45 - . . scaffold37772 GLEAN mRNA 22803 28480 0.678428 - . ID=CGI_10002493; scaffold38422 WUBlastX DNA_MuDR 1713 1958 54 + . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_RTE-BovB 308731 308817 20 - . . . . . -1 -1 -1 . . . C36014 WUBlastX DNA_TcMar-Tc2 28004 28228 122 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L1-Tx1 778324 779403 72 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 224232 224291 24 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LTR_Ngaro 29364 30206 97 - . . scaffold42880 GLEAN mRNA 29055 29522 0.999999 - . ID=CGI_10007997; scaffold964 WUBlastX LTR_Ngaro 148543 149385 98 + . . . . . -1 -1 -1 . . . scaffold65 WUBlastX DNA_Zator 45946 46032 26 - . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LTR_Pao 75970 76335 84 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold102 WUBlastX LTR_Pao 727908 728777 535 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Gypsy 25288 26865 670 + . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LTR_Gypsy-Cigr 14641 14781 154 + . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LTR_Gypsy-Cigr 14970 15155 92 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 320546 320623 29 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Ngaro 316720 317373 174 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Ngaro 169043 169507 91 + . . . . . -1 -1 -1 . . . C35840 WUBlastX DNA_Harbinger 1641 1865 66 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold210 WUBlastX LINE_L1 287637 287999 100 - . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LINE_RTE-X 71855 72454 203 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold36190 WUBlastX LINE_CR1-L2 13912 14502 231 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LINE_CR1 108167 108898 196 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Ngaro 397008 397457 224 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 228128 228796 196 - . . . . . -1 -1 -1 . . . scaffold253 WUBlastX LTR_Gypsy 2653 3465 118 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold1736 WUBlastX DNA_hAT-Tip100 633611 633967 53 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 648739 649122 49 - . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX DNA_Maverick 48557 49042 218 - . . scaffold1440 GLEAN mRNA 46324 69343 0.667435 - . ID=CGI_10008354; scaffold933 WUBlastX DNA_Maverick 407530 408051 230 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 197222 197983 214 - . . scaffold854 GLEAN mRNA 197153 198070 0.635503 - . ID=CGI_10022241; scaffold301 WUBlastX DNA_Sola 723674 724033 153 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 34063 34269 25 - . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LINE_L2 17689 18333 110 - . . scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold1714 WUBlastX LINE_L2 312465 312635 20 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold510 WUBlastX DNA_hAT-hATw 297058 297900 133 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_hAT-Ac 236915 237223 47 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_hAT-Ac 237314 237775 120 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_IS4EU 468832 469437 232 + . . scaffold599 GLEAN mRNA 453980 472237 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 468832 469437 232 + . . scaffold599 GLEAN mRNA 456252 477114 0.953927 + . ID=CGI_10021726; scaffold1094 WUBlastX DNA_NOF? 35639 36301 184 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Ngaro 1246250 1246540 199 + . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LTR_Gypsy 275841 276146 97 - . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LTR_Gypsy 276215 276946 85 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_Academ 469368 469910 174 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 470703 470840 34 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L2 139440 139673 41 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 597182 597814 129 + . . scaffold854 GLEAN mRNA 593945 607422 0.999735 + . ID=CGI_10022261; scaffold36642 WUBlastX LINE_L1-Tx1 3333 3764 137 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold541 WUBlastX DNA_PiggyBac 612193 612729 92 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Gypsy 415273 415323 21 + . . . . . -1 -1 -1 . . . scaffold31222 WUBlastX LTR_Ngaro 7754 8200 156 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_L1-Tx1 150784 150891 26 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 1137375 1137575 41 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1137736 1138227 131 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold42158 WUBlastX LINE_RTE-BovB 16860 17081 68 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 44527 45588 231 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 323000 323872 176 - . . . . . -1 -1 -1 . . . scaffold43130 WUBlastX LTR_Gypsy 216425 216985 278 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 239637 240230 196 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 242828 243535 234 - . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy 302 1837 182 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 95333 95464 61 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold1476 WUBlastX LINE_R2-Hero 108347 108412 23 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_P 189525 190187 104 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 189525 190187 104 + . . scaffold1138 GLEAN mRNA 186841 191383 0.716431 + . ID=CGI_10015374; scaffold36526 WUBlastX LINE_L1-Tx1 21067 21417 47 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold1900 WUBlastX LTR_Gypsy 403080 405236 927 + . . . . . -1 -1 -1 . . . C34174 WUBlastX LINE_L2 14773 14937 140 - . . . . . -1 -1 -1 . . . C34174 WUBlastX LINE_L2 14949 15263 111 - . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LTR_DIRS 6020 6508 260 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_L1-Tx1 131415 132875 88 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Maverick 49240 49566 133 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-BovB 656325 656423 54 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Tc1 1855709 1856293 252 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy 81868 82182 50 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_TcMar-Tc1 176046 176096 48 - . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold908 WUBlastX DNA_IS4EU 35673 36254 246 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 81868 82083 36 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold20 WUBlastX LINE_RTE-X 373167 373361 46 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_RTE-X 375360 375473 57 - . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX LINE_CR1-L2 427 567 22 + . . . . . -1 -1 -1 . . . scaffold310 WUBlastX LTR_Gypsy 13879 14286 182 + . . . . . -1 -1 -1 . . . scaffold310 WUBlastX LTR_Gypsy 15835 15894 42 + . . . . . -1 -1 -1 . . . scaffold310 WUBlastX LTR_Gypsy 16619 16744 52 + . . . . . -1 -1 -1 . . . scaffold310 WUBlastX LTR_Gypsy 16759 16830 30 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_L1 144220 144450 35 - . . . . . -1 -1 -1 . . . scaffold34888 WUBlastX LINE_L1 7241 7408 70 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_Penelope 121129 121308 55 - . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LINE_L1-Tx1 102590 103177 184 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 404888 405640 63 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 613234 613467 51 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy 447459 448247 225 - . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LINE_L1-Tx1 103173 103283 25 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L1-Tx1 1239198 1239716 141 + . . . . . -1 -1 -1 . . . scaffold40442 WUBlastX LINE_L2 85271 86053 270 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX DNA_Harbinger 178324 178659 118 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 200563 200856 34 + . . . . . -1 -1 -1 . . . C32176 WUBlastX LTR_Pao 7939 8616 69 - . . . . . -1 -1 -1 . . . scaffold42784 WUBlastX LTR_Pao 52315 52401 27 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 65323 66384 326 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX DNA_Harbinger 23489 23953 112 + . . scaffold588 GLEAN mRNA 7475 24618 0.999942 + . ID=CGI_10016208; scaffold588 WUBlastX DNA_Harbinger 23030 23107 55 + . . scaffold588 GLEAN mRNA 7475 24618 0.999942 + . ID=CGI_10016208; scaffold588 WUBlastX DNA_Harbinger 23119 23352 178 + . . scaffold588 GLEAN mRNA 7475 24618 0.999942 + . ID=CGI_10016208; scaffold20 WUBlastX LINE_L1 241208 241702 196 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-X 884 1183 59 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-X 1203 1745 75 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 514600 514692 22 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Academ 257392 258024 275 - . . scaffold550 GLEAN mRNA 257305 257961 0.999663 - . ID=CGI_10012495; scaffold550 WUBlastX DNA_Academ 257957 258205 87 - . . scaffold550 GLEAN mRNA 257305 257961 0.999663 - . ID=CGI_10012495; scaffold1426 WUBlastX DNA_hAT-Tip100 6015 6419 96 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Tip100 6611 6880 131 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Tip100 6880 7038 63 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Tip100 7133 7483 44 + . . scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold591 WUBlastX LTR_Gypsy 229386 229817 169 - . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Gypsy 406507 406995 168 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 436751 437599 261 + . . . . . -1 -1 -1 . . . scaffold858 WUBlastX LINE_RTE-X 7605 8267 211 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_IS4EU 105027 105155 51 + . . scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold1376 WUBlastX DNA_TcMar-m44 4877 5113 30 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L2 587298 587711 58 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LTR_Ngaro 633963 634589 297 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_R2-Hero 178282 178500 152 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_R2-Hero 179129 179785 103 + . . . . . -1 -1 -1 . . . scaffold874 WUBlastX LINE_L1 2821 3627 332 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_L1-Tx1 380628 381257 301 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; C31910 WUBlastX DNA_TcMar-Tc2 7876 8388 358 - . . C31910 GLEAN mRNA 5235 9075 0.998023 - . ID=CGI_10000814; scaffold38006 WUBlastX LINE_L2 47598 48776 283 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS 758667 759269 267 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 19866 20480 245 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_L1 410366 411547 292 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 583439 584158 180 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 584142 584615 91 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_RTE-X 248439 248681 120 + . . scaffold43836 GLEAN mRNA 242579 251086 0.650911 - . ID=CGI_10013062; scaffold285 WUBlastX LTR_DIRS 233090 233689 147 + . . . . . -1 -1 -1 . . . scaffold285 WUBlastX LTR_DIRS 233685 233963 169 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 104518 104685 32 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 1334043 1335113 300 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 217611 217799 47 - . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_CR1 123725 124591 208 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX DNA_Sola 917391 918707 369 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 93927 94562 191 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 480119 480607 66 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX DNA_Harbinger 80067 80156 26 - . . scaffold221 GLEAN mRNA 79166 80425 0.999137 - . ID=CGI_10008344; scaffold221 WUBlastX DNA_Harbinger 80246 80638 140 - . . scaffold221 GLEAN mRNA 79166 80425 0.999137 - . ID=CGI_10008344; scaffold1327 WUBlastX LINE_Penelope 284210 284371 37 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX DNA_Academ 218930 219619 225 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 480119 480427 157 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 57248 57763 219 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1541 WUBlastX LINE_L1-Tx1 460808 460876 23 + . . . . . -1 -1 -1 . . . scaffold38944 WUBlastX LTR_Gypsy 21742 22404 470 + . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Ngaro 49325 50623 278 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 1026936 1027919 385 - . . . . . -1 -1 -1 . . . scaffold43302 WUBlastX DNA_MuDR 2301 3524 415 + . . . . . -1 -1 -1 . . . scaffold525 WUBlastX LINE_Jockey 194897 196045 196 - . . . . . -1 -1 -1 . . . scaffold549 WUBlastX LINE_RTE-BovB 59385 59585 153 + . . scaffold549 GLEAN mRNA 50843 62768 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59385 59585 153 + . . scaffold549 GLEAN mRNA 31331 63327 0.976872 + . ID=CGI_10004103; scaffold1715 WUBlastX DNA_hAT-Ac 435163 435522 212 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_hAT-Ac 435814 436290 194 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 317356 317550 59 - . . . . . -1 -1 -1 . . . C29576 WUBlastX LTR_DIRS 2095 2304 20 - . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LTR_Pao 186945 187193 74 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 314141 315679 505 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 45591 45674 21 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_RTE-X 137149 137232 56 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX DNA_Maverick 64212 64331 61 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX DNA_Maverick 64315 65097 289 - . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX DNA_Maverick 99084 100607 238 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold896 WUBlastX LINE_RTE-X 37908 38969 66 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 41012 41236 74 + . . . . . -1 -1 -1 . . . scaffold1672 WUBlastX LTR_DIRS 57963 60122 382 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold41798 WUBlastX DNA_Kolobok 112574 113137 195 + . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_Kolobok 113242 113439 129 + . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_Kolobok 114109 114267 100 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_Penelope 40955 42214 390 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Ngaro 279838 280491 474 - . . scaffold610 GLEAN mRNA 278888 282376 0.9996 + . ID=CGI_10021107; scaffold457 WUBlastX LTR_Ngaro 395981 396508 317 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 113709 113768 23 + . . . . . -1 -1 -1 . . . scaffold37064 WUBlastX LINE_CR1-L2 2453 3013 92 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_L2 237200 237505 28 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_RTE-X 166612 166944 132 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_RTE-X 167637 168086 226 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1 140736 141113 79 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1 142574 143185 301 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_L1-Tx1 410034 410417 51 - . . . . . -1 -1 -1 . . . scaffold39946 WUBlastX LINE_RTE-X 48646 49926 473 + . . . . . -1 -1 -1 . . . scaffold36356 WUBlastX LINE_RTE-BovB 27670 28734 188 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 83644 83898 23 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1-Tx1 258280 258834 50 + . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1-Tx1 260477 260701 77 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 234315 234668 54 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_RTE-X 9194 9499 76 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1 342167 343591 455 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold837 WUBlastX LTR_Gypsy-Cigr 7956 8546 412 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_DIRS 90061 90219 50 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_DIRS 90242 90454 135 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_DIRS 90456 90932 276 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_DIRS 90904 91002 20 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 1304546 1305790 20 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 381123 381248 65 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 381617 382030 103 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_DIRS 35530 35709 61 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_RTE-X 230904 232643 371 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold1324 WUBlastX LTR_Gypsy 465199 465366 38 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX DNA_Academ 25026 25514 195 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 25514 26137 358 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 26386 26550 125 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold715 WUBlastX LTR_Gypsy 17852 18550 178 + . . . . . -1 -1 -1 . . . C35606 WUBlastX LTR_Gypsy 6477 6902 201 - . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LTR_Gypsy 80148 80603 129 + . . scaffold206 GLEAN mRNA 57948 87960 0.702119 + . ID=CGI_10011372; scaffold106 WUBlastX LINE_CR1 345200 345361 68 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 472129 472821 217 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 474006 474359 73 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_L2 166765 167280 70 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy-Cigr 127312 127722 297 - . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_L2 206374 206460 22 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Pao 101892 103289 184 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_Academ 109056 109295 97 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 109348 110097 172 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 110902 111057 32 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold655 WUBlastX LINE_CR1-L2 316551 316769 22 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_CR1-L2 319781 320056 22 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold834 WUBlastX LTR_Gypsy-Cigr 54668 55123 390 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Maverick 350467 351903 503 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_R2-Hero 257135 258826 628 - . . scaffold1899 GLEAN mRNA 252311 263688 0.999676 - . ID=CGI_10013616; scaffold1899 WUBlastX LINE_R2-Hero 257135 258826 628 - . . scaffold1899 GLEAN mRNA 252505 265918 0.435071 + . ID=CGI_10013617; scaffold142 WUBlastX LINE_CR1 236693 237352 249 + . . scaffold142 GLEAN mRNA 226750 254431 0.969071 + . ID=CGI_10026760; scaffold1360 WUBlastX LINE_RTE-X 643882 644142 103 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 644109 644540 284 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy 191504 191620 25 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 519045 519506 48 + . . . . . -1 -1 -1 . . . scaffold35712 WUBlastX LINE_RTE-X 5777 6160 144 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_RTE-X 6754 7506 358 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold39412 WUBlastX LINE_RTE-X 23313 23786 240 - . . . . . -1 -1 -1 . . . scaffold39412 WUBlastX LINE_RTE-X 23801 24472 368 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_RTE-X 56522 58432 619 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_RTE-X 58444 58677 37 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 266857 267309 205 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 267597 267902 88 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 60979 61554 46 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 684526 684798 56 - . . scaffold419 GLEAN mRNA 671072 685906 0.998967 - . ID=CGI_10028358; scaffold498 WUBlastX LINE_L1-Tx1 127093 127353 31 - . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Sola 215675 216076 83 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1-Tx1 102466 102753 49 + . . . . . -1 -1 -1 . . . C31370 WUBlastX LTR_Gypsy 2924 4771 559 - . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_L1-Tx1 220398 220595 44 - . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_L1-Tx1 220564 221640 710 - . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_CR1 194551 195573 431 + . . scaffold44098 GLEAN mRNA 188555 213785 0.544557 + . ID=CGI_10017708; scaffold728 WUBlastX LTR_Gypsy 280726 280971 50 + . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 76007 76216 46 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold38876 WUBlastX LTR_Pao 47023 47649 253 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_L1-Tx1 51201 52019 469 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_L1-Tx1 51947 52180 172 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; C33580 WUBlastX LTR_Pao 4945 5724 41 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-X 26435 26674 136 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold36450 WUBlastX RC_Helitron 4845 5942 31 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold34106 WUBlastX LTR_DIRS 12454 12867 198 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold1020 WUBlastX LTR_Gypsy 259133 259219 44 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 43487 43660 59 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 43621 43923 20 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 44251 44460 32 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 39147 39221 45 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 40773 40937 45 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_Maverick 343585 344199 64 - . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX LINE_CR1-L2 44760 44909 125 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Gypsy 139123 139374 150 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 707889 708191 232 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_RTE-X 708203 708715 285 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_RTE-X 709520 710482 241 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold298 WUBlastX LTR_Gypsy 37517 39202 546 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 35158 36186 336 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LINE_CR1-L2 459166 459336 60 + . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LINE_CR1-L2 19628 19948 50 + . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_CR1 13461 13835 55 - . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_CR1 92178 92219 22 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX LTR_Pao 340032 340217 27 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_CR1-L2 388212 388433 23 - . . scaffold583 GLEAN mRNA 365612 390201 0.692695 - . ID=CGI_10023621; scaffold1402 WUBlastX LINE_L2 478982 479485 50 + . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LINE_L2 17597 17698 20 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold1866 WUBlastX LINE_L2 221135 221407 42 - . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1554 WUBlastX LINE_L2 84939 85151 28 - . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX DNA_Crypton 534310 534693 46 + . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LTR_Gypsy-Cigr 191963 192352 65 - . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LTR_Gypsy-Cigr 257229 257495 52 - . . . . . -1 -1 -1 . . . C3813 WUBlastX LTR_Gypsy 14 115 77 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LTR_Gypsy 223889 224395 52 + . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LTR_Gypsy 926 1234 47 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_Jockey 67808 68275 25 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 14003 14161 75 - . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_Harbinger 156523 156642 51 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_Harbinger 47385 47690 20 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy 472313 472441 58 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX RC_Helitron 335916 336170 99 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX DNA_hAT 353929 354411 41 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold39600 WUBlastX DNA_Harbinger 300 479 55 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 226232 226333 20 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX DNA_IS4EU 73200 73739 47 - . . . . . -1 -1 -1 . . . C29774 WUBlastX LINE_Jockey 272 415 65 - . . . . . -1 -1 -1 . . . scaffold36816 WUBlastX LINE_L1-Tx1 16656 16811 83 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1 86695 87012 64 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1 632601 632813 51 - . . . . . -1 -1 -1 . . . C28626 WUBlastX LINE_I 531 581 22 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Ngaro 475784 475981 57 + . . . . . -1 -1 -1 . . . C28540 WUBlastX DNA_TcMar-Marin 1764 1991 63 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_TcMar-Marin 228916 229056 64 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_TcMar-Marin 111404 111685 58 + . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX DNA_TcMar-Tc1 61935 62156 79 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_Penelope 249926 250150 85 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX DNA_P 480774 480944 34 + . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold983 WUBlastX DNA_NOF 247561 247995 32 + . . scaffold983 GLEAN mRNA 244830 248843 1 - . ID=CGI_10014030; scaffold33980 WUBlastX LTR_Gypsy 9782 10102 27 - . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold752 WUBlastX LTR_ERV1 236204 236740 21 + . . scaffold752 GLEAN mRNA 235985 237469 0.999984 + . ID=CGI_10010044; C6047 WUBlastX LINE_RTE-BovB 1 123 64 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_RTE-X 124904 125182 33 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_RTE-BovB 240375 240827 61 + . . scaffold833 GLEAN mRNA 240516 240821 0.96892 + . ID=CGI_10016737; scaffold172 WUBlastX DNA_Maverick 230318 230434 57 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_Gypsy 363373 363504 20 + . . . . . -1 -1 -1 . . . scaffold148 WUBlastX LTR_Gypsy 99965 100039 28 + . . . . . -1 -1 -1 . . . scaffold41022 WUBlastX LINE_RTE-X 97718 98002 35 - . . scaffold41022 GLEAN mRNA 87016 104666 0.650358 + . ID=CGI_10004637; scaffold42448 WUBlastX LINE_RTE-X 105030 105173 59 - . . . . . -1 -1 -1 . . . C11037 WUBlastX DNA_hAT-Tag1 2 148 44 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L1 1240661 1240774 29 + . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX DNA_Harbinger 127543 127683 28 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 283182 283496 66 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LTR_Gypsy 127140 127490 59 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_L1-Tx1 330757 331170 49 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LTR_Gypsy 324341 324682 38 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy-Cigr 4100 4216 77 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy-Cigr 55022 55159 84 - . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold1885 WUBlastX DNA_PiggyBac 206522 206716 38 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_CR1-L2 89786 90085 70 + . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_CR1-L2 58880 59008 22 - . . . . . -1 -1 -1 . . . scaffold40952 WUBlastX LINE_CR1-L2 14148 14405 27 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 1154798 1155307 46 + . . scaffold1154 GLEAN mRNA 1155101 1155487 0.449004 + . ID=CGI_10026209; scaffold237 WUBlastX LTR_Ngaro 294007 294204 38 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Ngaro 105518 106243 39 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 1284989 1285264 24 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 541759 541872 52 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LTR_Gypsy 847021 847203 67 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_TcMar-Tc1 278949 279086 48 - . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX DNA_Kolobok-IS4 15260 15403 30 + . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX DNA_Kolobok-IS4 15845 16018 31 + . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX RC_Helitron 62336 62560 88 - . . scaffold1575 GLEAN mRNA 54747 64275 0.592949 - . ID=CGI_10004720; scaffold933 WUBlastX LINE_Penelope 220593 220781 67 + . . . . . -1 -1 -1 . . . scaffold484 WUBlastX DNA_TcMar-Marin 81 623 50 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_L1 136077 136583 24 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L1 479598 479681 21 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_L1-Tx1 17563 17724 80 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1 75421 75717 49 - . . scaffold138 GLEAN mRNA 71718 76716 0.998636 - . ID=CGI_10008427; scaffold393 WUBlastX LINE_L1 190131 190691 25 - . . . . . -1 -1 -1 . . . scaffold941 WUBlastX LINE_L1 24899 25075 57 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LINE_L1 309333 309698 40 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LINE_RTE-X 133060 133179 30 + . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LINE_RTE-X 8226 8534 22 + . . . . . -1 -1 -1 . . . scaffold477 WUBlastX LINE_RTE-X 3233 3505 22 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LINE_RTE-X 147562 147840 77 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Lenti 169952 170104 23 - . . scaffold1009 GLEAN mRNA 163164 171986 0.959931 - . ID=CGI_10028721; scaffold772 WUBlastX DNA_Sola 358829 358930 59 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_Sola 359283 359462 32 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 1019835 1020005 22 + . . scaffold733 GLEAN mRNA 1017652 1019905 0.995936 + . ID=CGI_10025901; scaffold1687 WUBlastX LINE_CR1-L2 97835 98059 51 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_CR1 310727 311419 21 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_L2 383423 383674 66 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_L2 218412 218729 55 + . . . . . -1 -1 -1 . . . scaffold39998 WUBlastX DNA_hAT-Tip100 1495 1857 98 - . . . . . -1 -1 -1 . . . scaffold1177 WUBlastX LTR_Gypsy-Cigr 36842 37255 65 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 4242 4433 51 + . . . . . -1 -1 -1 . . . scaffold31308 WUBlastX LTR_Ngaro 8093 8533 76 - . . . . . -1 -1 -1 . . . scaffold40186 WUBlastX DNA_Crypton 44203 44400 67 - . . . . . -1 -1 -1 . . . scaffold40186 WUBlastX DNA_Crypton 44402 44542 36 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX RC_Helitron 258570 259565 48 - . . . . . -1 -1 -1 . . . scaffold36716 WUBlastX DNA_Harbinger 19413 20153 62 - . . . . . -1 -1 -1 . . . scaffold1706 WUBlastX DNA_Kolobok 37769 37981 93 - . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold168 WUBlastX DNA_TcMar-Marin 373697 373798 35 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LINE_RTE-X 16784 16960 48 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-BovB 445811 445909 45 - . . scaffold57 GLEAN mRNA 444980 452251 1 + . ID=CGI_10020561; scaffold57 WUBlastX LINE_RTE-BovB 446209 446307 45 - . . scaffold57 GLEAN mRNA 444980 452251 1 + . ID=CGI_10020561; scaffold1382 WUBlastX LINE_L1 155905 156387 43 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Pao 409177 409863 91 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold37850 WUBlastX LINE_L2 17239 17553 75 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_CR1-L2 57246 57785 54 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L2 908185 908568 75 + . . . . . -1 -1 -1 . . . scaffold1404 WUBlastX LTR_Ngaro 154451 154789 63 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_En-Spm 198195 198536 46 - . . scaffold1832 GLEAN mRNA 198351 200947 0.999463 - . ID=CGI_10018468; scaffold461 WUBlastX LTR_Gypsy 56907 57179 100 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX RC_Helitron 14447 14926 106 + . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold1301 WUBlastX DNA_hAT-Tip100 60292 60639 94 - . . . . . -1 -1 -1 . . . scaffold1725 WUBlastX DNA_IS4EU 37415 37843 51 - . . scaffold1725 GLEAN mRNA 33815 37894 0.771905 - . ID=CGI_10004728; scaffold564 WUBlastX DNA_TcMar-Marin 372659 372775 26 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LTR_Gypsy 76352 76942 96 + . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX DNA_TcMar-Fot1 75496 76032 35 - . . . . . -1 -1 -1 . . . C34634 WUBlastX LINE_Penelope 13921 14448 34 - . . . . . -1 -1 -1 . . . scaffold817 WUBlastX DNA_MuDR 47291 47389 42 - . . scaffold817 GLEAN mRNA 47004 50153 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47536 47769 33 - . . scaffold817 GLEAN mRNA 47004 50153 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47880 48005 59 - . . scaffold817 GLEAN mRNA 47004 50153 0.999225 - . ID=CGI_10008654; scaffold145 WUBlastX LINE_Penelope 90730 91077 71 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_L1 467127 467498 72 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LINE_L1 658574 658624 25 + . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_RTE-X 88569 88640 33 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold1119 WUBlastX LINE_RTE-BovB 222716 223000 59 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 854192 854410 117 + . . . . . -1 -1 -1 . . . scaffold577 WUBlastX LINE_RTE-X 33529 33816 64 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 613403 613708 33 - . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_RTE-X 19904 20068 80 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L1-Tx1 255483 255881 22 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_CR1-L2 115452 115688 21 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_L2 26586 26774 102 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_CR1 272067 272669 53 - . . . . . -1 -1 -1 . . . scaffold43066 WUBlastX DNA_Harbinger 95393 95668 89 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_Penelope 275622 275906 44 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_RTE-BovB 134890 135102 83 - . . . . . -1 -1 -1 . . . scaffold40564 WUBlastX LINE_RTE-X 29560 29883 45 - . . . . . -1 -1 -1 . . . C31130 WUBlastX LINE_RTE-BovB 6126 6275 44 + . . C31130 GLEAN mRNA 1615 7443 0.999998 - . ID=CGI_10000707; scaffold32 WUBlastX DNA_TcMar-Tc1 22 108 43 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX DNA_Maverick 262026 262286 88 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 27793 28029 57 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold591 WUBlastX LINE_L2 5905 6471 60 + . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX LINE_CR1 967 1218 24 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L2 21509 21796 96 + . . . . . -1 -1 -1 . . . scaffold40114 WUBlastX LINE_CR1-L2 21571 21756 37 + . . scaffold40114 GLEAN mRNA 20826 33927 0.999548 + . ID=CGI_10003919; scaffold1396 WUBlastX LINE_L2 127024 127161 39 + . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX DNA_MuDR 12544 13017 29 - . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LTR_Gypsy 48569 48718 52 + . . . . . -1 -1 -1 . . . scaffold35860 WUBlastX LTR_Gypsy 1596 2075 29 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX DNA_Harbinger 180439 180549 75 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX DNA_Harbinger 181268 181381 41 + . . . . . -1 -1 -1 . . . scaffold38822 WUBlastX DNA_Harbinger 56294 56368 27 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy 500014 500103 28 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 195880 196272 122 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold450 WUBlastX LTR_Gypsy 79735 80106 109 - . . scaffold450 GLEAN mRNA 66067 80656 0.505252 - . ID=CGI_10010319; scaffold364 WUBlastX DNA_MuDR 345283 345546 67 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Ngaro 159409 159957 68 - . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LINE_L1-Tx1 115286 115477 52 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 469491 469562 20 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1018 WUBlastX LINE_RTE-X 262406 262579 58 - . . scaffold1018 GLEAN mRNA 242940 268764 0.606365 + . ID=CGI_10019762; scaffold1018 WUBlastX LINE_RTE-X 262557 262676 56 - . . scaffold1018 GLEAN mRNA 242940 268764 0.606365 + . ID=CGI_10019762; scaffold113 WUBlastX LINE_RTE-X 54343 54660 41 + . . scaffold113 GLEAN mRNA 53720 57757 0.859957 + . ID=CGI_10021283; scaffold867 WUBlastX LINE_RTE-X 655133 655306 27 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 655639 656001 62 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Sola 3988 4128 75 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX DNA_Sola 15390 15530 75 + . . scaffold1869 GLEAN mRNA 8009 37015 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15390 15530 75 + . . scaffold1869 GLEAN mRNA 11164 16956 0.999984 + . ID=CGI_10009012; scaffold184 WUBlastX DNA_PiggyBac 251800 251874 28 - . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold160 WUBlastX LTR_Pao 320819 321091 27 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LTR_DIRS 193601 193888 32 - . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX DNA_Crypton 36968 37285 92 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_DIRS 615935 616267 76 - . . . . . -1 -1 -1 . . . scaffold589 WUBlastX DNA_IS4EU 51069 51284 127 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L1 592495 592752 108 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1 537529 537987 77 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_Kolobok 32583 32792 82 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold1719 WUBlastX DNA_Kolobok 18341 18631 76 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX DNA_Kolobok 19587 19742 26 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Ngaro 163106 163405 77 - . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_TcMar-Pogo 216056 216415 136 + . . scaffold43576 GLEAN mRNA 197837 232524 1 - . ID=CGI_10011134; scaffold873 WUBlastX LINE_Penelope 160220 160372 70 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 422418 422675 24 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-BovB 90092 90178 25 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-BovB 210112 210435 110 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_RTE-X 480358 480990 59 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LINE_RTE-X 486464 486730 45 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LINE_RTE-X 486733 487161 52 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_CR1-L2 242196 242681 65 + . . . . . -1 -1 -1 . . . scaffold308 WUBlastX LINE_CR1-L2 278167 278574 49 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L2 146464 146511 23 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 58890 59237 82 + . . . . . -1 -1 -1 . . . scaffold41390 WUBlastX LTR_Gypsy-Cigr 71553 72194 128 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LTR_Gypsy 37346 38428 59 + . . . . . -1 -1 -1 . . . scaffold39384 WUBlastX LTR_Gypsy 44936 45496 127 + . . . . . -1 -1 -1 . . . scaffold366 WUBlastX LTR_Gypsy 11652 11804 89 + . . scaffold366 GLEAN mRNA 509 12362 0.308663 - . ID=CGI_10007770; scaffold366 WUBlastX LTR_Gypsy 11652 11804 89 + . . scaffold366 GLEAN mRNA 4558 26262 1 + . ID=CGI_10007771; scaffold1532 WUBlastX LINE_RTE-X 1675425 1675940 45 - . . . . . -1 -1 -1 . . . C31070 WUBlastX DNA_Maverick 3680 4015 119 - . . . . . -1 -1 -1 . . . scaffold42062 WUBlastX LINE_RTE-X 143125 143331 50 + . . . . . -1 -1 -1 . . . C34552 WUBlastX LINE_RTE-X 6168 6341 29 - . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_RTE-X 85710 85781 22 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold1226 WUBlastX LTR_DIRS 24122 24547 68 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Pao 197734 198018 126 - . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX LINE_CR1-L2 25845 26267 130 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Pao 204644 204808 49 - . . . . . -1 -1 -1 . . . scaffold206 WUBlastX DNA_En-Spm 128057 128494 57 - . . scaffold206 GLEAN mRNA 123903 131741 0.999975 - . ID=CGI_10011374; C8531 WUBlastX LTR_Gypsy 2 139 152 + . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX DNA_Harbinger 58118 58420 75 + . . . . . -1 -1 -1 . . . C29882 WUBlastX LTR_Gypsy 2397 2924 112 + . . . . . -1 -1 -1 . . . scaffold35694 WUBlastX LINE_R2-Hero 17840 18226 35 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_L1-Tx1 523671 523994 115 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold1314 WUBlastX LINE_Penelope 55763 56026 23 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX DNA_TcMar-Marin 22514 22867 34 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_RTE-X 438917 439087 41 + . . . . . -1 -1 -1 . . . scaffold40606 WUBlastX LINE_RTE-X 9324 9521 79 - . . scaffold40606 GLEAN mRNA 7541 35661 0.834284 + . ID=CGI_10004278; scaffold1805 WUBlastX LINE_RTE-X 50059 50400 94 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-X 631652 632011 107 - . . . . . -1 -1 -1 . . . scaffold1028 WUBlastX LINE_RTE-X 42111 42278 43 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold42392 WUBlastX LINE_Proto2 158263 158511 42 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_Proto2 169110 169316 25 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_R2 22950 23054 23 - . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LINE_RTE-BovB 121592 121783 86 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 839648 840127 65 - . . scaffold370 GLEAN mRNA 838405 846799 0.855201 + . ID=CGI_10025566; scaffold209 WUBlastX LINE_L1-Tx1 271471 272010 23 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 165708 166106 78 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 71466 71630 33 - . . . . . -1 -1 -1 . . . scaffold1742 WUBlastX LTR_Copia 252162 252491 142 - . . . . . -1 -1 -1 . . . C29618 WUBlastX LINE_CR1-L2 6334 6777 137 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_CR1 1152412 1153287 83 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_L2 306428 306661 113 + . . . . . -1 -1 -1 . . . C36680 WUBlastX LINE_CR1 10021 10293 31 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold1500 WUBlastX DNA_hAT-Tip100 87245 88048 46 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX DNA_Kolobok 94693 95523 104 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX DNA_PiggyBac 23691 24191 101 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 192124 192510 142 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold432 WUBlastX LINE_RTE-X 82853 83200 97 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 16810 17178 128 + . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_DIRS 129681 130001 123 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_DIRS 130007 131503 472 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_DIRS 131691 132029 108 - . . . . . -1 -1 -1 . . . scaffold36748 WUBlastX LINE_L2 5048 6304 810 - . . . . . -1 -1 -1 . . . scaffold43066 WUBlastX LTR_Pao 88369 89925 313 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LTR_Gypsy-Cigr 757458 759377 729 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX RC_Helitron 46137 46913 33 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy-Cigr 85719 87401 359 - . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LTR_Pao 2 1060 1028 + . . scaffold556 GLEAN mRNA 518 1066 0.999999 + . ID=CGI_10016788; scaffold40114 WUBlastX LINE_L2 21758 21955 81 + . . scaffold40114 GLEAN mRNA 20826 33927 0.999548 + . ID=CGI_10003919; scaffold43624 WUBlastX LINE_L2 285044 285469 101 + . . scaffold43624 GLEAN mRNA 281450 291101 0.999421 - . ID=CGI_10011515; scaffold1397 WUBlastX LINE_CR1 245203 245448 152 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 497070 497171 66 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy 273996 274352 79 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_hAT-Ac 363252 363527 67 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_ERV1 105440 105496 20 + . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX DNA_IS4EU 44745 45266 139 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 523318 523671 176 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_RTE-X 330352 330432 31 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1-Tx1 137434 138297 66 - . . . . . -1 -1 -1 . . . C31370 WUBlastX LTR_Gypsy 5218 5769 319 - . . . . . -1 -1 -1 . . . scaffold598 WUBlastX LTR_Ngaro 1493 3094 1034 + . . scaffold598 GLEAN mRNA 1303 4771 0.992797 + . ID=CGI_10001778; scaffold53 WUBlastX LINE_RTE-X 1125964 1128489 808 + . . scaffold53 GLEAN mRNA 1118540 1138631 0.654333 + . ID=CGI_10026699; scaffold1137 WUBlastX LTR_Pao 472 4821 882 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Pao 1020213 1020512 193 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Pao 1023087 1023374 236 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 161891 162532 111 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 162994 163953 475 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 163946 164368 406 - . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_L2 18943 19419 144 - . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LINE_L2 10629 11345 104 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LINE_L2 20810 21298 122 - . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold914 WUBlastX LTR_Ngaro 365946 366497 98 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 429290 429448 75 - . . . . . -1 -1 -1 . . . scaffold39202 WUBlastX LTR_Gypsy 47174 47833 118 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 45624 46406 78 + . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L1-Tx1 827013 827237 21 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_TcMar-Tc1 260166 260423 153 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX DNA_Maverick 232390 232797 121 + . . . . . -1 -1 -1 . . . C28030 WUBlastX DNA_Maverick 11 295 168 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX DNA_Maverick 5333 5665 136 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_DIRS 88173 88757 399 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold514 WUBlastX LTR_DIRS 88778 89833 661 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold42790 WUBlastX LTR_Gypsy 158786 158827 28 + . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LINE_RTE-X 425418 426455 471 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Gypsy 180313 180762 175 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_I 44804 44980 29 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 206358 206441 46 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 404141 404470 37 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_TcMar-Tc1 431301 431465 93 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_MuDR 99475 100746 51 + . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1 171260 171475 25 - . . . . . -1 -1 -1 . . . scaffold1674 WUBlastX DNA_Maverick 8475 8729 127 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_DIRS 40 558 121 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_DIRS 584 679 43 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 359769 360098 83 + . . . . . -1 -1 -1 . . . C31910 WUBlastX DNA_TcMar-Tc2 3591 3893 56 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy-Cigr 202847 204268 649 - . . . . . -1 -1 -1 . . . C30022 WUBlastX LTR_Pao 2 2089 1223 - . . . . . -1 -1 -1 . . . C30022 WUBlastX LTR_Pao 3067 3255 48 - . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_RTE-X 83166 83468 105 - . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_RTE-X 83468 85042 1060 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-X 763870 767283 905 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 388707 389255 132 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_L1 669905 670099 55 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_CR1-L2 670243 670773 30 + . . scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold41086 WUBlastX LINE_L2 10637 10879 100 + . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LTR_DIRS 158665 158892 80 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 332665 332805 20 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Gypsy 441100 441558 53 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 169357 170625 176 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold38152 WUBlastX LTR_Gypsy 49826 50356 182 - . . . . . -1 -1 -1 . . . scaffold296 WUBlastX LINE_L1-Tx1 212670 213488 94 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_L1-Tx1 334010 334669 80 - . . . . . -1 -1 -1 . . . scaffold1652 WUBlastX LINE_RTE-X 244874 245410 28 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_DIRS 32264 32737 143 - . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold1213 WUBlastX LINE_L1-Tx1 103599 103913 39 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy-Cigr 129658 130683 500 - . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_L1-Tx1 181867 182769 324 - . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_L1-Tx1 184323 184730 80 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 10556 11266 206 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_CR1-L2 842 1387 112 - . . . . . -1 -1 -1 . . . scaffold788 WUBlastX DNA_IS4EU 124855 125223 93 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LINE_RTE-X 36764 37429 81 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-X 777326 777769 186 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_TcMar-Tc1 673241 673483 28 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 477124 477513 62 - . . . . . -1 -1 -1 . . . scaffold1538 WUBlastX LTR_Gypsy 41700 41948 55 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 98909 99001 28 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Gypsy 52099 53292 959 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_CR1-L2 265545 265724 36 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_L2 56398 56616 24 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 483858 484256 22 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold973 WUBlastX LTR_Gypsy 301604 301762 84 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 371390 371551 78 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_IS4EU 854627 855088 160 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_Jockey 51854 52267 80 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_TcMar-Fot1 1051974 1052789 161 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_RTE-X 86995 87288 105 + . . scaffold630 GLEAN mRNA 80549 90707 0.970045 - . ID=CGI_10018325; scaffold43878 WUBlastX LINE_L1-Tx1 33757 33948 24 - . . scaffold43878 GLEAN mRNA 19366 41477 0.131804 - . ID=CGI_10013710; scaffold36 WUBlastX LTR_Gypsy 2996 5128 1016 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold86 WUBlastX DNA_Academ 456205 457683 850 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 457955 458260 118 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 458650 458925 96 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 458970 459356 258 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy-Cigr 568729 568848 85 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LINE_L2 38402 39016 155 - . . . . . -1 -1 -1 . . . scaffold38908 WUBlastX DNA_IS4EU 37601 37900 109 + . . . . . -1 -1 -1 . . . C30816 WUBlastX LINE_RTE-X 7150 7254 33 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LINE_RTE-X 74325 74780 163 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold406 WUBlastX LINE_RTE-X 421815 422372 104 + . . scaffold406 GLEAN mRNA 402781 436007 0.999901 + . ID=CGI_10023847; scaffold36390 WUBlastX LTR_Pao 28641 30149 1052 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 45768 46763 808 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 93882 94421 21 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LTR_Gypsy-Cigr 21638 22372 151 + . . . . . -1 -1 -1 . . . scaffold41008 WUBlastX LTR_Ngaro 57921 58289 193 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_TcMar-Fot1 117032 117196 61 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold146 WUBlastX DNA_PiggyBac 967215 967523 94 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 759730 760377 165 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 763645 763929 79 + . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_RTE-X 139411 139779 180 + . . scaffold42840 GLEAN mRNA 134311 145100 0.999472 - . ID=CGI_10007836; scaffold1241 WUBlastX LINE_L1-Tx1 207024 207371 63 - . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy 48690 49790 868 + . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy 50026 51174 638 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 266589 266819 53 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_L2 117827 118369 141 + . . scaffold422 GLEAN mRNA 114938 133622 0.999998 - . ID=CGI_10018795; scaffold41388 WUBlastX LINE_L2 55975 56430 166 - . . scaffold41388 GLEAN mRNA 55240 60308 0.999676 - . ID=CGI_10005014; scaffold1670 WUBlastX LINE_CR1 404146 404607 205 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold700 WUBlastX LINE_CR1-L2 51347 51778 208 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 394234 394341 74 - . . . . . -1 -1 -1 . . . scaffold1052 WUBlastX LTR_DIRS 37764 38465 182 - . . scaffold1052 GLEAN mRNA 1917 38966 0.980203 - . ID=CGI_10005467; scaffold90 WUBlastX LTR_Gypsy 395099 396442 180 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold1862 WUBlastX DNA_Kolobok-IS4 659029 659691 173 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold257 WUBlastX DNA_TcMar-Tc2 479348 479854 203 - . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_MuDR 30728 30994 44 + . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_MuDR 31332 31511 66 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 473164 473262 33 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-X 47463 48578 81 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold602 WUBlastX LTR_Gypsy 87583 88911 524 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 88910 89551 503 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 265450 265896 93 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_L1-Tx1 294730 294951 99 - . . . . . -1 -1 -1 . . . C32542 WUBlastX LINE_RTE-X 11201 11857 166 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 395444 396163 235 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold120 WUBlastX LINE_RTE-X 461043 461498 211 + . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Pao 11019 11354 247 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold1771 WUBlastX LTR_Gypsy-Cigr 90425 94066 1830 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold156 WUBlastX RC_Helitron 1024835 1027405 696 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 1455952 1456152 24 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Maverick 4452 4847 150 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LTR_Gypsy-Cigr 87804 89918 1336 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Maverick 61989 63575 862 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Maverick 63545 64468 609 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Maverick 64806 65018 79 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 88755 88925 105 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 158024 158254 40 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_CR1-L2 453923 453973 21 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; C26018 WUBlastX LINE_RTE-X 263 1540 872 - . . . . . -1 -1 -1 . . . C26018 WUBlastX LINE_RTE-X 1935 3653 957 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Pao 188005 188514 42 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Ngaro 134727 135149 166 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_CR1 83083 83349 22 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-X 152641 152955 78 + . . . . . -1 -1 -1 . . . scaffold40196 WUBlastX DNA_TcMar-Marin 3561 3857 145 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_Sola 58591 58755 21 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_Sola 59331 59813 27 + . . . . . -1 -1 -1 . . . scaffold1881 WUBlastX LINE_CR1-L2 58299 58493 100 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 117059 117343 178 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L1-Tx1 34671 35012 52 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 542370 542543 46 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LINE_CR1 176532 179747 2072 + . . . . . -1 -1 -1 . . . C35794 WUBlastX LTR_Pao 7964 9538 463 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LTR_Ngaro 90982 91305 178 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 200432 200581 37 + . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX LTR_Pao 2352 2816 463 + . . . . . -1 -1 -1 . . . scaffold32230 WUBlastX LTR_Gypsy 6283 9687 2088 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LINE_Penelope 121816 121983 28 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 484699 485517 119 + . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LTR_Gypsy 69493 69963 154 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1-Tx1 58028 58258 29 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy-Troyk 53861 53983 68 - . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy-Troyk 55908 56108 104 - . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy-Troyk 56832 57095 186 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX DNA_MuDR 220840 221124 41 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_RTE-BovB 365718 366536 133 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold370 WUBlastX LINE_L1-Tx1 979415 980449 181 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX DNA_TcMar-Tc1 264953 265330 153 + . . scaffold1098 GLEAN mRNA 223579 266249 0.353937 - . ID=CGI_10010798; scaffold1188 WUBlastX LINE_R2-Hero 81618 82007 100 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_Kolobok-IS4 279056 279715 282 - . . scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_Kolobok-IS4 279056 279715 282 - . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold42450 WUBlastX DNA_IS4EU 58066 58443 108 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LINE_L1 3409 4080 278 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 9289 9549 84 + . . . . . -1 -1 -1 . . . scaffold36356 WUBlastX LINE_RTE-BovB 27222 27701 74 + . . . . . -1 -1 -1 . . . scaffold1803 WUBlastX LINE_RTE-X 36764 37684 194 - . . scaffold1803 GLEAN mRNA 35391 52757 0.995479 - . ID=CGI_10014040; scaffold257 WUBlastX DNA_TcMar-Tc2 473684 474055 291 - . . . . . -1 -1 -1 . . . scaffold39334 WUBlastX DNA_TcMar-Tc1 45111 46073 154 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 65989 66957 91 - . . scaffold370 GLEAN mRNA 48035 69825 0.999273 - . ID=CGI_10025517; scaffold77 WUBlastX LTR_Gypsy 1453953 1454636 272 - . . scaffold77 GLEAN mRNA 1435771 1455368 0.401661 + . ID=CGI_10028040; scaffold40088 WUBlastX DNA_Harbinger 10401 10466 50 + . . . . . -1 -1 -1 . . . C30570 WUBlastX LINE_L1 5489 6088 267 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 415713 416366 210 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold35636 WUBlastX LTR_DIRS 17343 17453 88 + . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 19566 19991 144 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1607670 1607789 23 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold1066 WUBlastX LTR_Gypsy 255796 255840 21 + . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LINE_RTE-X 76022 76330 78 - . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX LTR_Ngaro 19207 19824 122 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Ngaro 138615 138848 104 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-X 9035 9937 164 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_Sola 338315 338800 74 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_L1-Tx1 4646 5167 139 + . . . . . -1 -1 -1 . . . C33188 WUBlastX DNA_Harbinger 2494 2763 134 - . . . . . -1 -1 -1 . . . C33188 WUBlastX DNA_Harbinger 3277 3537 131 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 635099 635290 51 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_L2 264387 264842 362 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Kolobok 293350 293604 150 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 294604 294744 48 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold370 WUBlastX DNA_hAT-hATw 843845 844747 34 + . . scaffold370 GLEAN mRNA 838405 846799 0.855201 + . ID=CGI_10025566; scaffold730 WUBlastX DNA_NOF 480679 481269 119 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX DNA_NOF 482223 483674 172 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_L1-Tx1 196864 197607 221 + . . scaffold43146 GLEAN mRNA 193579 199513 0.963019 - . ID=CGI_10009047; scaffold1221 WUBlastX DNA_TcMar-Tc1 222837 223019 36 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Ngaro 300080 300526 250 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold317 WUBlastX LTR_DIRS 486296 487027 266 + . . . . . -1 -1 -1 . . . scaffold278 WUBlastX LINE_RTE-X 36198 37253 227 + . . . . . -1 -1 -1 . . . scaffold1467 WUBlastX LINE_R2-Hero 3902 4090 22 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 178174 178545 104 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 197252 197347 21 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Harbinger 88824 89150 142 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Harbinger 89212 89502 234 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_Penelope 198311 198427 26 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_Penelope 198369 198959 260 + . . . . . -1 -1 -1 . . . C33730 WUBlastX LINE_L1-Tx1 14277 14726 178 + . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LINE_RTE-X 330335 330691 50 + . . scaffold43818 GLEAN mRNA 325023 332374 0.596002 + . ID=CGI_10012778; scaffold35110 WUBlastX LINE_RTE-X 8551 9051 148 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 155573 155737 39 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 157178 157564 173 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_Penelope 562253 563374 333 + . . . . . -1 -1 -1 . . . scaffold29 WUBlastX LINE_RTE-X 14256 15176 217 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Tip100 735456 736196 136 + . . . . . -1 -1 -1 . . . scaffold814 WUBlastX LTR_Ngaro 85526 86416 290 - . . scaffold814 GLEAN mRNA 83997 88485 0.997298 + . ID=CGI_10008194; scaffold471 WUBlastX LTR_Ngaro 503008 503295 160 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Ngaro 503279 503935 167 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 918626 918802 74 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 917092 918084 279 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 918554 918802 50 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-X 409514 409906 58 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 410947 411510 148 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 411567 411923 208 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_IS4EU 211586 212431 320 - . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX DNA_TcMar-Tc1 259837 260721 297 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_RTE-X 190916 191092 122 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_RTE-X 191091 191984 57 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_DIRS 201736 202815 369 - . . . . . -1 -1 -1 . . . scaffold40808 WUBlastX LTR_DIRS 81230 82309 369 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1067771 1069135 363 - . . scaffold1024 GLEAN mRNA 1067411 1070428 0.977799 - . ID=CGI_10028562; scaffold348 WUBlastX LINE_L1 132631 133812 236 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Harbinger 54395 54763 163 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Harbinger 55431 55544 116 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Harbinger 56322 56582 98 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-BovB 111322 111621 196 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-BovB 111656 112567 266 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 129588 129980 83 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 431598 432251 45 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1 140647 140859 92 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold1189 WUBlastX LINE_L2 214319 214870 173 + . . . . . -1 -1 -1 . . . C28722 WUBlastX LINE_L2 4333 5388 366 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_Penelope 1135563 1136150 137 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LTR_Pao 136776 137306 526 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 290830 291147 151 - . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 148355 148522 44 + . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LTR_DIRS 125158 126660 446 + . . . . . -1 -1 -1 . . . C27812 WUBlastX LTR_DIRS? 966 1772 504 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 264198 264356 67 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1156413 1157135 421 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Sola 249123 249269 56 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_DIRS 325782 326453 487 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_DIRS 331358 332353 426 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX DNA_TcMar-Tc1 52535 53566 420 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Pao 66479 66550 47 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold40104 WUBlastX LINE_L1 16533 16877 54 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_L1-Tx1 84205 84414 22 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold667 WUBlastX LTR_Gypsy 89832 90266 195 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 549488 549856 43 - . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LTR_Gypsy 49229 49774 70 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LTR_Ngaro 118564 119619 258 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_CR1 746558 747331 234 - . . scaffold583 GLEAN mRNA 741499 750992 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 746558 747331 234 - . . scaffold583 GLEAN mRNA 742000 755299 0.5 + . ID=CGI_10023644; scaffold1894 WUBlastX LTR_Gypsy 206805 207059 77 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Ngaro 651433 651828 65 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 84642 84992 28 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_PiggyBac 997759 999378 494 - . . scaffold168 GLEAN mRNA 995195 1004011 0.992438 - . ID=CGI_10025624; scaffold419 WUBlastX DNA_Maverick 1365692 1366810 529 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 108937 109110 158 + . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LINE_L1 32735 33685 482 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LINE_Penelope 186125 186961 191 - . . scaffold42790 GLEAN mRNA 181485 188091 0.999947 - . ID=CGI_10007719; scaffold42790 WUBlastX LINE_Penelope 186970 187524 312 - . . scaffold42790 GLEAN mRNA 181485 188091 0.999947 - . ID=CGI_10007719; scaffold43314 WUBlastX LTR_Gypsy-Cigr 137189 137263 21 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX RC_Helitron 315148 316419 388 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Gypsy 114257 114436 20 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_RTE-X 9170 9403 81 + . . . . . -1 -1 -1 . . . scaffold43184 WUBlastX LINE_RTE-BovB 5477 5644 176 + . . . . . -1 -1 -1 . . . scaffold43184 WUBlastX LINE_RTE-BovB 6074 6511 208 + . . . . . -1 -1 -1 . . . scaffold1299 WUBlastX LINE_RTE-BovB 139259 139771 137 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 140606 141202 162 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1104 WUBlastX LTR_DIRS 28397 29335 601 - . . . . . -1 -1 -1 . . . scaffold42096 WUBlastX DNA_Harbinger 107935 108855 586 - . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX DNA_Harbinger 107935 108855 586 - . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold1878 WUBlastX LINE_RTE-BovB 42398 42652 111 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_L1-Tx1 265466 265963 54 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold934 WUBlastX LINE_L1-Tx1 267071 268096 374 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; C26860 WUBlastX LTR_Gypsy-Cigr 378 1604 671 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 408108 408797 415 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold934 WUBlastX LTR_Ngaro 408776 408925 119 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold43794 WUBlastX LTR_DIRS 152925 153410 367 + . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LTR_DIRS 153401 153724 227 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX LINE_L1 27210 27917 184 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_R2-Hero 291796 291930 104 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_R2-Hero 602894 603028 104 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1 321772 321957 62 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 497385 498200 673 - . . . . . -1 -1 -1 . . . C30224 WUBlastX LINE_L2 3586 4548 346 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Ngaro 600996 601085 37 - . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold719 WUBlastX LTR_Ngaro 220159 220611 207 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Ngaro 220548 221471 460 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_RTE-X 69089 69859 168 - . . . . . -1 -1 -1 . . . C27058 WUBlastX LTR_DIRS 2185 3711 502 + . . . . . -1 -1 -1 . . . C27058 WUBlastX LTR_DIRS 3830 4282 229 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_RTE-X 107743 108132 103 + . . . . . -1 -1 -1 . . . scaffold665 WUBlastX LINE_RTE-X 165157 166773 609 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_DIRS 258904 261156 662 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold43146 WUBlastX LTR_Ngaro 64385 65095 311 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 56526 57527 396 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 104933 105703 96 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1042620 1044575 707 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LTR_Pao 165750 165941 163 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Gypsy 30267 30695 219 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 679522 680016 95 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX LINE_L1-Tx1 591569 592495 261 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold1014 WUBlastX LINE_L1-Tx1 592692 593300 385 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold309 WUBlastX LTR_Gypsy 132432 132884 51 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 74868 76265 689 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 693471 694445 415 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_RTE-X 404980 406824 415 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 35613 35897 22 - . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_CR1-L2 265617 266861 404 - . . scaffold400 GLEAN mRNA 262709 267661 0.544852 - . ID=CGI_10011440; scaffold654 WUBlastX DNA_Maverick 46014 46493 219 + . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_L2 92863 93162 42 - . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LTR_Copia 43788 43817 22 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold43500 WUBlastX LTR_Pao 44155 44454 33 + . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L2 88093 88557 39 + . . scaffold1581 GLEAN mRNA 87967 89628 0.999064 + . ID=CGI_10005313; scaffold42990 WUBlastX LINE_CR1-L2 167031 167141 67 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_CR1-L2 108157 108315 32 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_L2 159457 159756 48 - . . . . . -1 -1 -1 . . . C4719 WUBlastX LTR_Gypsy 1 117 74 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LTR_Gypsy 28899 29093 69 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 397545 397724 36 - . . scaffold354 GLEAN mRNA 397434 397808 0.999212 - . ID=CGI_10025719; scaffold38292 WUBlastX LTR_Gypsy 47397 47750 88 + . . scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold48 WUBlastX LTR_Gypsy 760489 760779 64 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_DIRS 195901 196647 22 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 129305 129514 41 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129305 129514 41 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 129712 129846 33 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129712 129846 33 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold39096 WUBlastX LTR_Gypsy 51687 52097 38 + . . scaffold39096 GLEAN mRNA 50582 58209 0.813277 + . ID=CGI_10003149; scaffold541 WUBlastX RC_Helitron 106557 107243 41 + . . scaffold541 GLEAN mRNA 106056 107192 0.777728 + . ID=CGI_10022378; scaffold991 WUBlastX DNA_hAT-Ac 15625 15765 63 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 625843 626160 58 - . . scaffold115 GLEAN mRNA 617761 631483 0.999676 + . ID=CGI_10021409; scaffold190 WUBlastX LINE_L1 32159 32278 35 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L1 51885 52325 54 + . . scaffold753 GLEAN mRNA 36571 68340 0.958809 + . ID=CGI_10014195; scaffold1874 WUBlastX LINE_L1 118455 118859 46 - . . scaffold1874 GLEAN mRNA 117095 118859 0.558382 - . ID=CGI_10011923; scaffold126 WUBlastX DNA_Kolobok 419160 419279 47 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LINE_L1 51956 52060 20 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L1 284360 284551 66 + . . . . . -1 -1 -1 . . . scaffold35950 WUBlastX DNA_TcMar-Tc1 27821 28087 32 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX DNA_TcMar-Fot1 11099 11272 46 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX DNA_MuDR 71232 71969 35 - . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_Maverick 7278 7340 30 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_R1 372583 372963 28 - . . scaffold1736 GLEAN mRNA 366824 375681 0.972064 - . ID=CGI_10020967; scaffold221 WUBlastX LTR_Gypsy 52503 52682 22 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_RTE-X 62586 62870 65 + . . . . . -1 -1 -1 . . . scaffold787 WUBlastX DNA_TcMar-Marin 274618 274764 26 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy-Cigr 322992 323240 69 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_CR1-L2 129565 129984 73 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_L2 135964 136137 82 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_Rex-Babar 334123 334524 61 - . . scaffold1860 GLEAN mRNA 329243 343922 0.916009 + . ID=CGI_10013950; scaffold365 WUBlastX LINE_CR1 328821 328949 83 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_CR1 54743 54880 46 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LTR_Pao 217292 217624 98 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Copia 93962 94009 21 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy-Cigr 40017 40220 34 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 346034 346096 21 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 346034 346096 21 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold41700 WUBlastX LTR_Gypsy 36242 36328 42 - . . . . . -1 -1 -1 . . . C31846 WUBlastX LINE_L1-Tx1 740 907 36 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_IS4EU 347870 348160 70 - . . . . . -1 -1 -1 . . . scaffold1798 WUBlastX DNA_IS4EU 29657 29830 33 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 324293 324466 33 - . . . . . -1 -1 -1 . . . scaffold42740 WUBlastX DNA_IS4EU 8848 9021 33 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 638025 638264 43 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Gypsy 519090 520043 40 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX DNA_Harbinger 151466 151624 20 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_Penelope 198928 199041 76 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_Penelope 459456 459740 30 + . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LINE_Penelope 140988 141365 43 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_Penelope 55014 55154 67 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L1 856687 856953 31 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_IS4EU 93704 93952 38 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L1 1045445 1045624 54 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 806014 806262 48 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 297558 297767 55 + . . . . . -1 -1 -1 . . . scaffold36802 WUBlastX DNA_MuDR 16008 16280 70 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_PiggyBac 228362 228541 93 + . . . . . -1 -1 -1 . . . scaffold41754 WUBlastX LINE_RTE-X 89090 89308 30 + . . scaffold41754 GLEAN mRNA 79569 95321 0.84848 - . ID=CGI_10005558; scaffold1056 WUBlastX LINE_RTE-X 111090 111263 60 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LINE_RTE-X 144073 144435 92 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 424513 424575 27 + . . . . . -1 -1 -1 . . . scaffold710 WUBlastX LINE_RTE-X 6092 6388 22 + . . . . . -1 -1 -1 . . . scaffold36638 WUBlastX LINE_RTE-X 13868 13984 69 + . . scaffold36638 GLEAN mRNA 3118 17920 0.499919 + . ID=CGI_10002047; scaffold53 WUBlastX LINE_L2 1071086 1071292 44 - . . . . . -1 -1 -1 . . . scaffold659 WUBlastX LINE_L2 362603 362845 57 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_L1-Tx1 913964 914173 81 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_L1 29590 29898 45 + . . scaffold447 GLEAN mRNA 1608 38607 0.995957 + . ID=CGI_10014216; scaffold816 WUBlastX DNA_TcMar-Pogo 283288 283374 28 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX DNA_hAT-Tip100 238881 239132 67 - . . scaffold156 GLEAN mRNA 233811 241733 0.990897 + . ID=CGI_10026484; scaffold1473 WUBlastX LINE_L2 17173 17502 68 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold1799 WUBlastX LTR_Ngaro 57831 57986 61 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold599 WUBlastX LTR_Ngaro 32970 33563 50 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold43194 WUBlastX LTR_Ngaro 213223 213390 99 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_Harbinger 326368 326478 88 - . . . . . -1 -1 -1 . . . scaffold1256 WUBlastX DNA_Harbinger 81366 81629 82 - . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX DNA_Harbinger 33788 33961 100 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-hATx 161787 162086 50 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_Kolobok-IS4 634253 634753 83 - . . . . . -1 -1 -1 . . . scaffold387 WUBlastX DNA_Kolobok-IS4 97044 97253 98 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1 650766 651002 28 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LINE_L1 188984 189229 20 + . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_L1 31937 32260 23 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_L1 155501 155716 80 - . . . . . -1 -1 -1 . . . scaffold1676 WUBlastX DNA_TcMar-Marin 11077 11934 63 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX DNA_TcMar-Tc2 314089 314451 96 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_P 78184 78450 82 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_MuDR 374806 375132 70 - . . scaffold591 GLEAN mRNA 374812 375012 0.988733 - . ID=CGI_10027565; scaffold354 WUBlastX LINE_RTE-X 1000780 1000905 22 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_RTE-X 1000890 1001033 60 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_TcMar-Fot1 219878 220342 90 - . . scaffold425 GLEAN mRNA 219872 220276 0.998748 - . ID=CGI_10025981; scaffold807 WUBlastX LINE_RTE-BovB 274400 274555 65 + . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LINE_RTE-BovB 109315 109470 65 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX LINE_RTE-BovB 69587 69763 93 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_RTE-X 319741 319836 25 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_RTE-X 319829 319987 34 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold40154 WUBlastX LTR_DIRS 32633 33076 73 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_Rex-Babar 329572 330069 57 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L2 133896 134231 72 - . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_CR1-L2 87005 87169 89 - . . scaffold922 GLEAN mRNA 65021 94381 0.690826 - . ID=CGI_10005662; scaffold42530 WUBlastX LINE_L2 30832 30966 28 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LINE_L2 31107 31568 42 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LINE_L1 188463 188582 53 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 459257 459658 75 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX DNA_Academ 3936 4310 93 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX DNA_Harbinger 208121 208270 65 + . . . . . -1 -1 -1 . . . scaffold33588 WUBlastX LTR_Gypsy 13904 14359 98 + . . . . . -1 -1 -1 . . . scaffold1533 WUBlastX DNA_TcMar-Marin 99547 99774 55 - . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1 139702 139869 113 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_L1-Tx1 125722 126132 59 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_L1 515487 515837 86 - . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX DNA_Maverick 30401 30634 84 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_RTE-X 96951 97142 77 + . . . . . -1 -1 -1 . . . scaffold604 WUBlastX LINE_L1-Tx1 14278 14487 92 + . . scaffold604 GLEAN mRNA 6227 39101 0.995797 - . ID=CGI_10005590; scaffold425 WUBlastX LINE_L1-Tx1 767860 768069 92 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 858907 858969 22 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_hAT-Tip100 359156 359491 111 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold493 WUBlastX LINE_L1-Tx1 158597 158860 76 + . . scaffold493 GLEAN mRNA 158443 165350 0.999991 + . ID=CGI_10007250; scaffold150 WUBlastX LINE_L1-Tx1 186511 186840 66 + . . . . . -1 -1 -1 . . . C34876 WUBlastX LINE_L2 12556 12702 34 + . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_CR1 1629 1967 65 - . . . . . -1 -1 -1 . . . scaffold38438 WUBlastX DNA_Academ 6465 6755 41 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LTR_Ngaro 158448 158741 46 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LTR_Ngaro 159640 159819 55 + . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX LTR_Ngaro 21645 22319 75 - . . . . . -1 -1 -1 . . . C33188 WUBlastX DNA_Harbinger 2458 2646 37 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_IS4EU 156987 157124 77 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_IS4EU 157872 158066 23 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX RC_Helitron 139941 140357 89 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX DNA_Kolobok-Hyd 269630 270040 23 - . . scaffold1448 GLEAN mRNA 269171 271647 0.740287 - . ID=CGI_10011860; scaffold33638 WUBlastX LINE_Penelope 2596 2841 78 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-X 23290 23487 96 + . . scaffold1423 GLEAN mRNA 13450 32441 0.999998 - . ID=CGI_10025403; scaffold531 WUBlastX LINE_RTE-X 19679 19792 33 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_RTE-X 119717 120088 55 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX DNA_NOF 480571 481269 80 - . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LTR_Gypsy 88613 88795 89 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_R2 209176 209322 21 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold42166 WUBlastX LINE_R1 10125 10616 40 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_RTE-X 341356 341658 100 + . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX DNA_TcMar-Tc1 111907 112242 56 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_L2 15603 16004 93 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_CR1-L2 164292 164687 50 - . . scaffold138 GLEAN mRNA 160827 167097 0.989024 - . ID=CGI_10008431; scaffold41388 WUBlastX LINE_CR1-L2 61047 61415 62 - . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_L2 259327 259578 108 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_L2 456570 456866 40 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy-Cigr 20902 21321 110 + . . . . . -1 -1 -1 . . . scaffold296 WUBlastX LTR_Ngaro 116658 116729 29 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 228026 228220 111 - . . . . . -1 -1 -1 . . . scaffold998 WUBlastX LINE_RTE-BovB 50460 50504 34 + . . scaffold998 GLEAN mRNA 43399 61271 0.812368 + . ID=CGI_10006460; scaffold998 WUBlastX LINE_RTE-BovB 50500 50601 87 + . . scaffold998 GLEAN mRNA 43399 61271 0.812368 + . ID=CGI_10006460; scaffold258 WUBlastX LTR_Gypsy 154867 154968 35 - . . scaffold258 GLEAN mRNA 151537 159402 0.998597 - . ID=CGI_10020045; scaffold32282 WUBlastX LTR_Gypsy 7553 7732 60 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 801575 802495 110 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy-Cigr 409656 410114 72 - . . . . . -1 -1 -1 . . . scaffold1411 WUBlastX LTR_Gypsy-Cigr 119835 120212 105 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Gypsy-Cigr 51807 52637 98 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_R2-Hero 678458 678523 24 + . . scaffold313 GLEAN mRNA 678155 687721 0.369345 - . ID=CGI_10026618; scaffold77 WUBlastX DNA_Kolobok-IS4 431741 432154 85 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy 478219 478341 71 - . . . . . -1 -1 -1 . . . scaffold33848 WUBlastX DNA_Kolobok 14028 14234 102 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Ngaro 3327 3881 44 - . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX LINE_RTE-X 86014 86139 45 + . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 86014 86139 45 + . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold41318 WUBlastX LINE_RTE-X 88874 89278 71 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX DNA_TcMar-Tc1 1288700 1288906 36 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Gypsy 545652 546341 104 - . . scaffold1213 GLEAN mRNA 541578 546950 0.733271 - . ID=CGI_10027453; scaffold32160 WUBlastX LTR_Pao 420 584 37 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX DNA_En-Spm 76804 77256 66 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Ngaro 814688 814897 68 + . . . . . -1 -1 -1 . . . scaffold559 WUBlastX DNA_Kolobok 38017 38742 94 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_IS4EU 197803 198150 35 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX RC_Helitron 200434 200829 110 + . . . . . -1 -1 -1 . . . scaffold1812 WUBlastX LINE_L1-Tx1 61272 61643 72 - . . . . . -1 -1 -1 . . . scaffold858 WUBlastX LINE_Proto2 9033 9194 24 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LINE_RTE-BovB 267245 267526 83 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold1024 WUBlastX DNA_PiggyBac 1076105 1076257 72 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold266 WUBlastX DNA_Maverick 332567 333082 88 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 423525 423692 71 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_RTE-X 417625 417867 97 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-X 220234 220626 128 - . . . . . -1 -1 -1 . . . scaffold98 WUBlastX LINE_RTE-X 246755 247120 100 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 46978 47304 75 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 453061 453348 118 - . . scaffold146 GLEAN mRNA 445752 454994 0.544479 - . ID=CGI_10024906; scaffold452 WUBlastX LINE_RTE-X 12038 12199 32 + . . . . . -1 -1 -1 . . . C29108 WUBlastX LINE_RTE-X 1818 2237 61 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_RTE-X 215637 216125 73 + . . . . . -1 -1 -1 . . . C22312 WUBlastX LINE_RTE-X 46 372 63 + . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LINE_CR1-L2 53050 53256 57 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 438620 438964 104 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold1600 WUBlastX LTR_DIRS 184660 184761 36 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 184660 184761 36 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold1588 WUBlastX LTR_Gypsy 307467 308252 113 - . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX RC_Helitron 126107 126658 144 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX DNA_IS4EU 186422 186883 53 + . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; C30176 WUBlastX DNA_Harbinger 5486 5881 125 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX DNA_Kolobok 232070 232252 31 - . . scaffold236 GLEAN mRNA 231446 232793 0.958487 - . ID=CGI_10018140; C31572 WUBlastX LINE_RTE-X 7683 7946 125 + . . . . . -1 -1 -1 . . . scaffold1872 WUBlastX LINE_RTE-X 97596 98108 41 - . . scaffold1872 GLEAN mRNA 81130 113506 0.586599 + . ID=CGI_10007184; scaffold42922 WUBlastX LTR_Gypsy 5818 6267 118 - . . . . . -1 -1 -1 . . . scaffold40820 WUBlastX DNA_Sola 99832 100485 111 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX DNA_TcMar-Tc1 380485 380721 42 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy-Cigr 337830 337976 35 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LTR_Pao 130269 130499 129 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 132833 133147 120 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Ngaro 261725 262207 77 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_Kolobok-IS4 56855 57193 101 - . . . . . -1 -1 -1 . . . scaffold1781 WUBlastX LINE_L1-Tx1 105291 105662 124 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 98777 99145 82 - . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX LINE_L1 69981 70934 76 - . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_L1-Tx1 98898 99359 81 - . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold145 WUBlastX LTR_Gypsy 800709 801266 133 + . . . . . -1 -1 -1 . . . scaffold39730 WUBlastX DNA_TcMar-Marin 16544 16909 68 + . . scaffold39730 GLEAN mRNA 3685 28743 0.191255 - . ID=CGI_10003588; scaffold39730 WUBlastX DNA_TcMar-Marin 16544 16909 68 + . . scaffold39730 GLEAN mRNA 16282 30561 0.999947 + . ID=CGI_10003589; scaffold625 WUBlastX LINE_RTE-X 165310 165360 22 - . . . . . -1 -1 -1 . . . scaffold1028 WUBlastX LINE_RTE-X 42117 42332 41 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold1682 WUBlastX LTR_Ngaro 155389 155556 28 + . . . . . -1 -1 -1 . . . scaffold37002 WUBlastX LINE_LOA 8289 8612 29 + . . . . . -1 -1 -1 . . . C29388 WUBlastX LTR_Gypsy-Cigr 3852 4424 138 + . . C29388 GLEAN mRNA 1255 5572 0.998536 + . ID=CGI_10000526; scaffold1524 WUBlastX LINE_L2 175144 175365 54 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 89551 90108 126 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LTR_Gypsy 121242 122174 49 - . . . . . -1 -1 -1 . . . C34562 WUBlastX DNA_IS4EU 7094 7390 68 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 529059 529505 63 - . . . . . -1 -1 -1 . . . scaffold1514 WUBlastX LTR_Gypsy 123609 124022 148 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 38878 39582 42 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 54630 55106 155 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_hAT-Tip100 52695 53024 56 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_CR1 298319 299320 384 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1 4860 5072 81 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1 341815 341949 66 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold1402 WUBlastX LINE_CR1 342478 343029 458 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold42372 WUBlastX LTR_Gypsy 27328 29700 465 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_TcMar-Tc2 106059 107309 1014 + . . scaffold658 GLEAN mRNA 98902 126256 0.997281 - . ID=CGI_10018964; scaffold44008 WUBlastX LTR_Gypsy 6270 6752 58 + . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX DNA_hAT-Tip100 27780 28067 150 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX DNA_hAT 96293 96988 123 - . . scaffold1717 GLEAN mRNA 96290 107438 1 - . ID=CGI_10013393; scaffold454 WUBlastX LTR_Gypsy 244054 244506 137 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 43322 43480 37 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LTR_DIRS 369720 370103 116 - . . . . . -1 -1 -1 . . . scaffold1814 WUBlastX LTR_Ngaro 80198 80401 47 - . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX DNA_Harbinger 291 644 139 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_Harbinger 5508 5621 43 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_Harbinger 6188 6394 81 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_Harbinger 6394 6453 38 + . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_L1 38644 38772 29 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX DNA_PiggyBac 584858 585697 153 - . . . . . -1 -1 -1 . . . scaffold35238 WUBlastX LINE_L1 1898 2023 38 - . . . . . -1 -1 -1 . . . scaffold436 WUBlastX LINE_RTE-BovB 5386 5457 39 + . . . . . -1 -1 -1 . . . scaffold436 WUBlastX LINE_RTE-BovB 5937 6743 112 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 689764 689835 37 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_L2 178836 179750 275 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 231894 232415 138 - . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1-Tx1 163128 164582 363 - . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1-Tx1 165011 165226 79 - . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1-Tx1 165222 165665 245 - . . . . . -1 -1 -1 . . . C30534 WUBlastX LTR_Copia 6770 7441 145 - . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_CR1 4231 4722 31 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold41436 WUBlastX LINE_L2 86700 87374 142 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy 283915 284397 162 - . . . . . -1 -1 -1 . . . scaffold39536 WUBlastX LINE_RTE-X 71373 71855 80 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_RTE-X 627197 627538 64 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold1506 WUBlastX LINE_RTE-X 48510 48836 101 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 734404 734712 176 - . . scaffold1360 GLEAN mRNA 732870 739512 0.95405 + . ID=CGI_10022670; scaffold39268 WUBlastX LINE_RTE-X 56706 57005 175 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; C21372 WUBlastX LINE_L1-Tx1 33 605 142 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Gypsy 479679 480314 300 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold42790 WUBlastX LTR_Gypsy 159000 159665 258 + . . . . . -1 -1 -1 . . . C29620 WUBlastX LINE_CR1-L2 4698 4955 31 + . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LTR_Gypsy 28492 28707 66 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_CR1-L2 254724 255425 112 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 200197 200553 61 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 200950 201012 22 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_Harbinger 662801 662971 102 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_R2-Hero 628862 629047 117 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_TcMar-Marin 793334 793480 27 + . . . . . -1 -1 -1 . . . scaffold35272 WUBlastX LINE_RTE-X 7641 7775 81 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_RTE-X 320688 321728 47 + . . scaffold767 GLEAN mRNA 315899 380131 0.808127 - . ID=CGI_10014850; scaffold365 WUBlastX DNA_PiggyBac 424041 424256 86 - . . . . . -1 -1 -1 . . . C31324 WUBlastX DNA_TcMar-Tc1 3739 3993 86 - . . . . . -1 -1 -1 . . . scaffold41858 WUBlastX DNA_TcMar-Tc1 90935 91213 131 + . . scaffold41858 GLEAN mRNA 78438 94955 0.999356 - . ID=CGI_10005768; scaffold42392 WUBlastX LTR_Gypsy-Cigr 147507 148058 150 - . . scaffold42392 GLEAN mRNA 146946 151067 0.782062 + . ID=CGI_10006786; scaffold1255 WUBlastX LTR_Gypsy-Cigr 393998 395692 904 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold833 WUBlastX LINE_L1-Tx1 465344 465853 45 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold914 WUBlastX LINE_L2 387077 387169 22 + . . scaffold914 GLEAN mRNA 383322 392651 0.969071 - . ID=CGI_10018890; scaffold471 WUBlastX LTR_Gypsy 254940 255113 41 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 255430 255516 34 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 255521 255919 91 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LTR_Gypsy 141816 141872 20 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 795332 795577 54 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX DNA_TcMar-Tc1 11407 11688 136 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_RTE-X 112052 113350 862 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_RTE-X 113341 113988 420 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L2 1574763 1575146 166 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_CR1-L2 374765 375835 82 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LINE_L2 219624 220832 104 - . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold422 WUBlastX DNA_IS4EU 430829 431539 71 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX DNA_TcMar-Tc1 380485 380604 56 - . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX DNA_Harbinger 15242 15430 92 - . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold383 WUBlastX LINE_L1-Tx1 336341 338959 1079 - . . . . . -1 -1 -1 . . . scaffold1679 WUBlastX LTR_Gypsy 28624 31473 1131 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold698 WUBlastX LINE_CR1 303613 304227 135 + . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_CR1-L2 92027 92074 25 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy-Cigr 328267 328569 204 - . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 13173 13796 120 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX DNA_hAT-Tip100 641380 641505 78 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 327189 327311 27 - . . . . . -1 -1 -1 . . . scaffold1876 WUBlastX LTR_Gypsy 99319 99441 29 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Harbinger 127108 127470 24 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_L1-Tx1 97420 97650 43 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1730 WUBlastX LINE_L1-Tx1 70032 70295 166 - . . . . . -1 -1 -1 . . . scaffold327 WUBlastX LINE_RTE-X 37250 37357 55 + . . . . . -1 -1 -1 . . . scaffold327 WUBlastX LINE_RTE-X 37638 37961 72 + . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX LTR_Gypsy-Cigr 169476 170015 165 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX DNA_Merlin 120058 120303 113 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 545022 545309 115 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_En-Spm 121068 121355 92 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 22093 22626 199 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold722 WUBlastX LTR_Ngaro 301283 301540 32 - . . . . . -1 -1 -1 . . . scaffold34872 WUBlastX DNA_Harbinger 17205 17657 202 - . . . . . -1 -1 -1 . . . C31724 WUBlastX LTR_Gypsy 4498 4539 23 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_Kolobok 346883 347041 79 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold43920 WUBlastX DNA_Kolobok 347351 347539 50 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; C25290 WUBlastX LINE_RTE-X 2292 3185 128 - . . . . . -1 -1 -1 . . . scaffold1333 WUBlastX LINE_L1-Tx1 158696 159139 191 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX RC_Helitron 693370 694071 193 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold1714 WUBlastX LTR_Gypsy 27111 27962 576 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Pao 143603 144391 225 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_L2 212591 213268 220 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Kolobok 4843 5082 79 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold140 WUBlastX DNA_TcMar-Tc1 380437 380646 45 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Ngaro 876558 876767 57 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_RTE-X 63784 64635 62 + . . . . . -1 -1 -1 . . . scaffold37844 WUBlastX LINE_RTE-X 36135 37007 136 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 57825 57983 30 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold41436 WUBlastX LINE_L2 96624 97454 401 - . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX LINE_L2 97453 98991 918 - . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX LINE_L2 98922 99332 121 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_Jockey 30399 31073 205 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_DIRS 768215 768664 172 + . . . . . -1 -1 -1 . . . scaffold1498 WUBlastX LTR_Ngaro 23897 24469 197 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX LTR_Ngaro 43139 43858 130 - . . . . . -1 -1 -1 . . . scaffold42032 WUBlastX DNA_IS4EU 139991 140248 129 - . . . . . -1 -1 -1 . . . scaffold40512 WUBlastX DNA_IS4EU 51587 51757 31 + . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold1883 WUBlastX LINE_L2 129679 130230 204 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_MuDR 63726 64289 235 - . . . . . -1 -1 -1 . . . scaffold38136 WUBlastX DNA_Maverick 287 763 169 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX DNA_MuDR 118552 118785 138 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX DNA_MuDR 118809 119090 58 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 13917 14240 222 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-BovB 217293 218087 238 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX DNA_TcMar-Tc2 108160 108546 146 - . . scaffold950 GLEAN mRNA 86388 112962 1 - . ID=CGI_10022920; scaffold204 WUBlastX DNA_TcMar-Tc1 803426 803899 186 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 624634 625536 786 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 627923 628330 279 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold42890 WUBlastX LTR_Gypsy 82709 84166 606 - . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LTR_Gypsy 82709 84166 606 - . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold647 WUBlastX LTR_Gypsy 20616 21950 74 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 280773 282626 1075 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold1315 WUBlastX LTR_Gypsy-Cigr 268816 271404 1481 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LTR_Gypsy-Cigr 272275 273321 241 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_CR1-L2 111262 111642 53 - . . . . . -1 -1 -1 . . . scaffold36816 WUBlastX LINE_L2 7248 7700 202 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 116969 117202 112 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_RTE-X 28655 29224 153 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 589719 590333 123 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_R2-Hero 1149148 1149339 71 - . . scaffold102 GLEAN mRNA 1142791 1154685 0.999233 - . ID=CGI_10028474; scaffold1066 WUBlastX LTR_Gypsy 251910 252338 265 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1 87464 87850 23 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LINE_RTE-X 91529 91990 189 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LINE_RTE-X 93158 93322 43 + . . . . . -1 -1 -1 . . . scaffold35070 WUBlastX DNA_PiggyBac 10523 10657 42 + . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LINE_CR1-L2 51218 51778 205 - . . . . . -1 -1 -1 . . . scaffold41722 WUBlastX LINE_L2 7490 7831 57 + . . . . . -1 -1 -1 . . . scaffold41722 WUBlastX LINE_L2 7879 8037 96 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy-Cigr 92457 93002 179 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1-Tx1 145253 145726 112 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_RTE-X 873 1757 210 - . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_Gypsy 39819 40493 202 + . . . . . -1 -1 -1 . . . scaffold718 WUBlastX LINE_CR1-L2 18205 18648 93 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy 240516 240743 138 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold347 WUBlastX LTR_Gypsy 603232 604008 297 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_Penelope 570795 571025 87 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold631 WUBlastX DNA_TcMar-Tc1 72585 72923 152 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 826573 830631 2131 - . . . . . -1 -1 -1 . . . scaffold450 WUBlastX DNA_hAT-Tip100 153184 153360 60 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_En-Spm 203135 204280 140 - . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LTR_DIRS 51168 51296 40 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 543779 544219 163 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 544360 544632 100 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_RTE-X 282111 283154 163 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-X 191632 192630 178 - . . scaffold672 GLEAN mRNA 185206 197456 1 + . ID=CGI_10021027; C30582 WUBlastX LINE_RTE-BovB 2637 2777 50 + . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_RTE-X 230136 230549 104 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LTR_Gypsy 87685 89547 935 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LTR_Gypsy 90430 91830 487 - . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LTR_Gypsy 139976 140464 429 + . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX DNA_IS4EU 42185 42460 156 + . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX DNA_IS4EU 42588 42812 76 + . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_RTE-X 32335 32736 144 - . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-X 30387 30704 97 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 30387 30704 97 - . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold925 WUBlastX LINE_RTE-X 199569 200096 83 + . . scaffold925 GLEAN mRNA 185655 201680 0.878781 - . ID=CGI_10017418; scaffold939 WUBlastX LTR_Gypsy 74180 74326 25 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_CR1-L2 287551 287811 110 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LTR_Gypsy 312129 313064 249 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX DNA_IS4EU 226002 226118 71 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 226517 226942 175 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold1721 WUBlastX DNA_IS4EU 2905 3045 109 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX DNA_Maverick 62727 62855 28 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX DNA_Maverick 62861 63034 59 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX DNA_Maverick 63028 63153 36 - . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX DNA_Maverick 71220 71471 25 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_TcMar-Pogo 409772 409978 88 - . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1-Tx1 13599 13814 23 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_L1-Tx1 210917 211087 66 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold568 WUBlastX LINE_L1-Tx1 295630 296472 38 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_En-Spm 254695 254832 87 + . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX DNA_hAT-hATw 82408 83211 237 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy 169155 169784 244 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold743 WUBlastX LINE_RTE-X 106816 107253 126 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold40614 WUBlastX LTR_DIRS 64546 64653 52 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold422 WUBlastX DNA_Harbinger 7304 7780 263 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L1 204267 204560 83 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 223449 223781 222 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 223823 224053 58 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L1-Tx1 3655 4005 114 + . . scaffold867 GLEAN mRNA 3265 13655 0.999351 + . ID=CGI_10026210; scaffold599 WUBlastX LTR_Gypsy 26596 28377 284 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 315068 315658 330 + . . . . . -1 -1 -1 . . . scaffold37006 WUBlastX LTR_DIRS 26832 27305 210 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold332 WUBlastX LTR_Ngaro 454789 454950 68 + . . . . . -1 -1 -1 . . . scaffold35732 WUBlastX LINE_RTE-X 2073 2933 218 - . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX DNA_TcMar-Pogo 278401 279180 247 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_TcMar-Pogo 596690 597115 34 + . . . . . -1 -1 -1 . . . scaffold1675 WUBlastX LTR_DIRS 10126 10383 63 - . . scaffold1675 GLEAN mRNA 745 11817 0.679204 - . ID=CGI_10001288; scaffold1675 WUBlastX LTR_DIRS 10391 10768 194 - . . scaffold1675 GLEAN mRNA 745 11817 0.679204 - . ID=CGI_10001288; scaffold531 WUBlastX DNA_Academ 22590 22982 177 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold170 WUBlastX LTR_Pao 130107 130499 95 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Pao 103329 103400 34 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 646728 647390 162 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 157565 157933 71 + . . . . . -1 -1 -1 . . . scaffold42784 WUBlastX LTR_Pao 52861 53025 118 + . . . . . -1 -1 -1 . . . scaffold42784 WUBlastX LTR_Pao 52998 53291 132 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LTR_DIRS 414466 415206 119 + . . scaffold588 GLEAN mRNA 413724 423614 0.849231 + . ID=CGI_10016228; scaffold804 WUBlastX LTR_Gypsy 178891 178998 24 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold101 WUBlastX LINE_L1 559008 559214 21 + . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 27841 27924 70 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 27977 28210 108 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 28231 28830 235 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_RTE-X 224105 224404 171 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc1 361458 362234 325 - . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX DNA_TcMar-Tc1 592369 593211 264 - . . scaffold1031 GLEAN mRNA 571823 599273 0.583554 - . ID=CGI_10019718; scaffold39642 WUBlastX LINE_L2 32564 32746 68 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L2 32728 33228 224 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L2 71478 71618 41 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX DNA_hAT-hATw 125648 125974 54 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-X 1884 2021 52 - . . . . . -1 -1 -1 . . . scaffold41974 WUBlastX LINE_RTE-BovB 30903 31523 283 + . . scaffold41974 GLEAN mRNA 275 36868 0.405305 - . ID=CGI_10005902; scaffold1785 WUBlastX DNA_Sola 716893 718005 390 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_P 119225 120766 292 - . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX DNA_hAT-Tip100 146209 146316 21 + . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX DNA_hAT-Tip100 146425 146673 96 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-BovB 161914 162339 317 - . . . . . -1 -1 -1 . . . scaffold65 WUBlastX LINE_RTE-X 126993 127094 26 + . . . . . -1 -1 -1 . . . scaffold65 WUBlastX LINE_RTE-X 127184 128380 250 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 534033 534164 41 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_Penelope 281675 282697 242 + . . scaffold1004 GLEAN mRNA 274842 298566 0.682505 - . ID=CGI_10020767; scaffold3 WUBlastX LTR_Pao 793381 794019 203 + . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX DNA_En-Spm 130256 130891 85 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_DIRS 1154486 1155385 382 + . . scaffold145 GLEAN mRNA 1139972 1169601 0.998984 + . ID=CGI_10026576; scaffold186 WUBlastX DNA_IS4EU 259284 260792 331 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 19280 19843 240 + . . . . . -1 -1 -1 . . . scaffold33904 WUBlastX LINE_RTE-X 6640 7866 205 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_En-Spm 194597 194905 157 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 619804 620262 204 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 382765 383358 272 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_Gypsy 452043 452462 243 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_DIRS 80138 80464 197 + . . . . . -1 -1 -1 . . . scaffold38580 WUBlastX DNA_Merlin 54093 54437 179 - . . . . . -1 -1 -1 . . . scaffold38580 WUBlastX DNA_Merlin 54406 54921 198 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LTR_Ngaro 126966 127694 195 + . . . . . -1 -1 -1 . . . scaffold41296 WUBlastX LTR_DIRS 112008 112607 411 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1-Tx1 161840 161983 21 - . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_L1-Tx1 440825 441376 336 - . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LINE_RTE-X 55297 56220 233 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LTR_Ngaro 90081 90806 302 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold1018 WUBlastX LINE_L1 87124 87882 413 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 539185 539922 472 + . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LTR_Ngaro 25141 25236 27 + . . scaffold36806 GLEAN mRNA 22975 34393 0.994851 + . ID=CGI_10002150; scaffold621 WUBlastX LINE_RTE-X 511264 512595 340 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LINE_L1-Tx1 59243 59719 258 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-X 868535 868894 58 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LINE_L1-Tx1 541779 542324 80 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_DIRS 10232 10849 329 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_DIRS 11050 11667 166 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1006112 1006606 196 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 158706 158798 37 + . . . . . -1 -1 -1 . . . C32578 WUBlastX LINE_L1 11396 11593 109 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LINE_L1-Tx1 251995 252495 55 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_CR1-L2 42459 44234 271 - . . scaffold1179 GLEAN mRNA 39144 50414 0.726285 + . ID=CGI_10027340; C28722 WUBlastX LINE_CR1 3839 4669 25 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX DNA_hAT-Tip100 124947 125969 551 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_Penelope 241818 243734 397 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_L1-Tx1 3370 4686 210 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Gypsy 497423 497758 92 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_TcMar-Fot1 486499 486543 30 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_TcMar-Fot1 486546 487145 448 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX DNA_TcMar-Pogo 177878 178462 305 - . . . . . -1 -1 -1 . . . scaffold43134 WUBlastX LINE_RTE-X 137535 138848 517 - . . scaffold43134 GLEAN mRNA 126924 141486 0.498925 + . ID=CGI_10008896; scaffold204 WUBlastX LINE_RTE-X 930485 930703 32 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_CR1 140624 140836 90 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 379442 379717 143 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 380073 380489 263 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_DIRS 226353 227123 282 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy 206913 207248 30 + . . . . . -1 -1 -1 . . . C28722 WUBlastX LINE_CR1-L2 5409 5834 167 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Maverick 328763 329326 316 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Ngaro 812300 812731 134 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LTR_Pao 272224 272472 93 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 62656 62979 146 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 63428 63595 95 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 85720 85908 69 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold39880 WUBlastX LINE_RTE-X 49561 50076 95 + . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_RTE-X 50090 50128 26 + . . . . . -1 -1 -1 . . . scaffold265 WUBlastX LTR_Ngaro 68524 69108 164 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold38552 WUBlastX LTR_Gypsy 19003 19389 187 + . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LTR_Ngaro 31522 32805 381 - . . . . . -1 -1 -1 . . . scaffold38524 WUBlastX DNA_TcMar-Pogo 14512 15843 691 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LINE_CR1-L2 469475 469564 34 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX LTR_Gypsy 118035 118952 758 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_RTE-X 112784 113173 218 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold37712 WUBlastX LINE_L2 42972 43253 76 + . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX LINE_L2 43508 44362 397 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 132247 132609 133 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_L1-Tx1 194104 195906 543 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_DIRS 91676 93766 513 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold36356 WUBlastX LINE_RTE-BovB 28438 28743 200 + . . . . . -1 -1 -1 . . . scaffold36356 WUBlastX LINE_RTE-BovB 28749 29039 217 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 999962 1000960 684 + . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LINE_RTE-X 16448 16825 166 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 209992 211818 495 - . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Ngaro 8165 8230 20 - . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LINE_L1-Tx1 185957 186463 32 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LTR_Pao 632426 633661 58 - . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LINE_RTE-BovB 69048 69545 207 + . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LTR_Gypsy-Cigr 352583 352822 188 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LTR_Gypsy 178944 179582 172 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L1-Tx1 49766 50776 202 + . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LTR_Gypsy 757308 757508 28 + . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX DNA_Sola 53946 54629 183 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX DNA_Sola 55285 55503 125 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX DNA_Sola 55494 56072 116 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX DNA_Sola 56612 56857 108 - . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LTR_Pao 24561 25304 23 + . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX DNA_hAT 12912 13658 518 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold42274 WUBlastX DNA_hAT 11875 11988 79 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold756 WUBlastX LTR_Gypsy 355917 356648 103 - . . . . . -1 -1 -1 . . . scaffold467 WUBlastX LINE_RTE-X 45194 45853 67 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LTR_DIRS 518639 519970 848 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_RTE-X 715361 717193 750 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1225618 1226337 278 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_P 189076 189189 24 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 189076 189189 24 + . . scaffold1138 GLEAN mRNA 186841 191383 0.716431 + . ID=CGI_10015374; scaffold711 WUBlastX DNA_hAT 177855 178133 39 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_Jockey 347355 347645 74 + . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LINE_L1 176185 176463 38 - . . . . . -1 -1 -1 . . . scaffold41502 WUBlastX LTR_Pao 84099 84194 21 - . . scaffold41502 GLEAN mRNA 69209 85192 0.426914 + . ID=CGI_10005174; scaffold1843 WUBlastX LINE_CR1 207226 207333 47 + . . . . . -1 -1 -1 . . . scaffold42306 WUBlastX LINE_L2 156317 156559 79 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_CR1 182454 182678 43 - . . . . . -1 -1 -1 . . . scaffold771 WUBlastX LINE_CR1-L2 317862 317963 77 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_L2 850308 850655 44 + . . scaffold784 GLEAN mRNA 848886 854519 0.990187 - . ID=CGI_10024446; scaffold40828 WUBlastX LTR_Gypsy 57153 57287 23 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold409 WUBlastX LINE_L2 47521 47646 29 - . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_L2 125475 125657 30 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 119451 119813 50 - . . . . . -1 -1 -1 . . . C353 WUBlastX LTR_Gypsy 3 101 83 + . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LTR_Gypsy 33763 33915 64 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_Gypsy 49332 49433 59 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_Gypsy 49819 49938 28 + . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX LTR_Gypsy 24819 25277 77 + . . . . . -1 -1 -1 . . . scaffold40828 WUBlastX LTR_Gypsy 57457 57801 53 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold1397 WUBlastX LTR_Gypsy 34957 35283 26 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Gypsy 516292 516444 52 - . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LTR_Gypsy 14813 14992 28 + . . . . . -1 -1 -1 . . . C25866 WUBlastX DNA_IS4EU 3258 3470 65 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_Kolobok-Hyd 88 570 43 - . . scaffold43662 GLEAN mRNA 16 393 0.836238 - . ID=CGI_10011602; scaffold1706 WUBlastX LINE_L1 71915 72529 55 + . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX LINE_L1 103305 103439 31 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_TcMar-Marin 172269 172331 32 - . . . . . -1 -1 -1 . . . scaffold38302 WUBlastX LINE_Penelope 37195 37752 25 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LTR_Gypsy 30153 30677 25 - . . scaffold1863 GLEAN mRNA 29271 30914 0.999642 - . ID=CGI_10016677; scaffold126 WUBlastX DNA_MuDR 579358 579612 63 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold1836 WUBlastX LINE_RTE-X 16718 16822 42 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-BovB 424113 424280 62 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 966640 966861 26 - . . . . . -1 -1 -1 . . . scaffold39986 WUBlastX LINE_RTE-BovB 63840 64022 43 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_RTE-X 31894 32211 44 + . . scaffold169 GLEAN mRNA 31609 39159 0.712323 + . ID=CGI_10022939; scaffold419 WUBlastX LINE_RTE-BovB 1464920 1465030 20 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Pogo 454891 455118 69 - . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX DNA_Sola 296529 296651 34 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX DNA_Sola 297014 297088 43 + . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX DNA_TcMar-Tc1 111813 111875 22 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_RTE-X 303999 304175 71 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 546158 546370 53 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX DNA_TcMar-Tc1 51682 51963 59 - . . scaffold1449 GLEAN mRNA 47527 52497 0.806919 - . ID=CGI_10010690; scaffold34732 WUBlastX LINE_L1-Tx1 16352 16564 47 + . . scaffold34732 GLEAN mRNA 11726 18752 1 - . ID=CGI_10001335; scaffold560 WUBlastX LINE_L1-Tx1 208299 208424 74 + . . scaffold560 GLEAN mRNA 202365 213820 0.999892 - . ID=CGI_10008758; scaffold1773 WUBlastX LINE_CR1 54498 54629 48 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_CR1-L2 212043 212141 31 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 12509 12823 49 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy-Cigr 270715 271068 69 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_L2 317127 317927 52 + . . scaffold177 GLEAN mRNA 302189 324161 0.999349 - . ID=CGI_10016066; C293 WUBlastX LTR_DIRS 5 100 56 + . . . . . -1 -1 -1 . . . scaffold32300 WUBlastX DNA_hAT-Ac 10298 10576 78 - . . scaffold32300 GLEAN mRNA 10008 10525 1 - . ID=CGI_10000880; scaffold485 WUBlastX DNA_IS4EU 826803 826976 94 + . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold128 WUBlastX LTR_Gypsy 274884 275198 95 + . . scaffold128 GLEAN mRNA 275169 275468 0.999372 + . ID=CGI_10021515; scaffold34308 WUBlastX LTR_Gypsy 10536 11039 45 - . . . . . -1 -1 -1 . . . scaffold33610 WUBlastX LTR_Gypsy 5999 6376 26 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 97836 98411 42 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold593 WUBlastX LTR_DIRS 516594 516995 63 - . . . . . -1 -1 -1 . . . scaffold37062 WUBlastX LTR_ERV1 5226 5669 30 + . . scaffold37062 GLEAN mRNA 5049 6548 0.965908 + . ID=CGI_10002249; scaffold348 WUBlastX LINE_Penelope 176054 176308 65 - . . scaffold348 GLEAN mRNA 160739 182763 0.583298 + . ID=CGI_10022972; scaffold675 WUBlastX LINE_Penelope 45614 46225 33 + . . . . . -1 -1 -1 . . . scaffold1784 WUBlastX LINE_Penelope 24873 25043 90 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_Jockey 131367 131594 42 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_L1 37951 38175 45 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold421 WUBlastX LINE_L1 51783 52019 87 + . . . . . -1 -1 -1 . . . scaffold1354 WUBlastX LINE_L1 51290 51571 49 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1 162083 162310 71 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 949301 949780 62 + . . scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold433 WUBlastX LINE_RTE-X 798816 799034 60 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_PiggyBac 171747 172091 70 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LINE_RTE-BovB 274427 274552 66 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-BovB 296190 296495 65 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-BovB 92756 92932 78 - . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LINE_RTE-BovB 109318 109443 66 - . . . . . -1 -1 -1 . . . scaffold39030 WUBlastX LINE_RTE-BovB 56904 57371 60 + . . . . . -1 -1 -1 . . . scaffold35252 WUBlastX LINE_RTE-X 9665 9964 27 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_RTE-X 301759 301908 73 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 669054 669350 45 + . . . . . -1 -1 -1 . . . scaffold35538 WUBlastX LINE_RTE-X 21118 21330 54 - . . scaffold35538 GLEAN mRNA 14229 24935 0.828916 + . ID=CGI_10001559; scaffold926 WUBlastX LTR_Ngaro 190537 190716 42 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1-Tx1 26412 26627 51 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_CR1 111532 111783 86 + . . . . . -1 -1 -1 . . . C27578 WUBlastX LINE_L2 542 688 21 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_L2 152294 152638 43 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L2 30779 30946 76 + . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX LINE_L2 62995 63150 27 - . . . . . -1 -1 -1 . . . scaffold37054 WUBlastX LINE_L2 38399 39181 25 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_L2 198970 199029 20 + . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LTR_DIRS 265105 265812 39 + . . . . . -1 -1 -1 . . . C31366 WUBlastX DNA_Academ 4019 4114 32 + . . C31366 GLEAN mRNA 393 6299 0.999547 - . ID=CGI_10000739; C31366 WUBlastX DNA_Academ 4143 4196 24 + . . C31366 GLEAN mRNA 393 6299 0.999547 - . ID=CGI_10000739; scaffold38580 WUBlastX DNA_TcMar-Marin 53482 53796 66 + . . . . . -1 -1 -1 . . . scaffold1429 WUBlastX DNA_IS4EU 17269 17514 57 - . . scaffold1429 GLEAN mRNA 13458 17611 0.727726 + . ID=CGI_10001355; scaffold39014 WUBlastX LINE_L1 10314 10778 79 + . . scaffold39014 GLEAN mRNA 10476 11390 0.848087 + . ID=CGI_10003135; scaffold1359 WUBlastX DNA_MuDR 270447 270758 90 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_TcMar-Marin 553362 553628 65 - . . scaffold1132 GLEAN mRNA 548431 556148 0.760962 + . ID=CGI_10023324; scaffold34 WUBlastX LINE_RTE-X 53363 53635 91 + . . . . . -1 -1 -1 . . . C27106 WUBlastX LINE_RTE-X 815 958 82 + . . . . . -1 -1 -1 . . . scaffold309 WUBlastX LINE_R1 72548 72604 24 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Ngaro 847389 847586 78 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 787237 787506 47 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L1-Tx1 318836 319531 37 - . . scaffold1894 GLEAN mRNA 303181 340585 0.788071 + . ID=CGI_10013342; scaffold260 WUBlastX LINE_L2 62759 62887 101 + . . scaffold260 GLEAN mRNA 48314 65715 0.848653 - . ID=CGI_10003729; scaffold42704 WUBlastX LINE_CR1-L2 128672 128989 46 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_ERVL 91553 92269 89 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold145 WUBlastX LTR_Gypsy 912180 912635 101 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX DNA_IS4EU 17373 17726 85 - . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_IS4EU 143650 143838 24 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 16508 16660 30 + . . . . . -1 -1 -1 . . . scaffold41970 WUBlastX LINE_L1 37863 38303 51 - . . scaffold41970 GLEAN mRNA 24536 41358 0.912364 - . ID=CGI_10005882; C34310 WUBlastX DNA_Kolobok-Hyd 730 1104 41 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_RTE-X 122097 122342 61 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-X 119919 120299 31 + . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LINE_RTE-X 4832 5080 65 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LINE_RTE-X 147505 147954 62 + . . . . . -1 -1 -1 . . . scaffold43494 WUBlastX LINE_RTE-X 208718 208966 65 + . . . . . -1 -1 -1 . . . scaffold40606 WUBlastX DNA_TcMar-Marin 43616 43951 96 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Sola 337655 337855 46 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 51734 51895 104 - . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX DNA_TcMar-Tc2 83712 83849 68 + . . . . . -1 -1 -1 . . . C32614 WUBlastX DNA_TcMar-Tc1 8061 8597 77 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Gypsy 920232 921296 86 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold43920 WUBlastX LTR_Gypsy 68933 69163 29 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS? 100692 100982 51 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LTR_DIRS? 101161 101286 42 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_IS4EU 553287 553436 47 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX DNA_IS4EU 10159 10386 106 + . . scaffold672 GLEAN mRNA 1455 17003 0.927273 - . ID=CGI_10021021; scaffold880 WUBlastX DNA_IS4EU 599056 599310 96 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_Harbinger 234183 234389 64 - . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX LTR_Gypsy 182344 182511 71 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX DNA_Kolobok 292479 292697 92 + . . scaffold394 GLEAN mRNA 286632 296945 0.296609 + . ID=CGI_10022077; scaffold34192 WUBlastX DNA_Kolobok 6264 6482 92 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L1 217165 217584 52 - . . scaffold1352 GLEAN mRNA 212932 230879 0.392918 - . ID=CGI_10018413; scaffold1593 WUBlastX LINE_L1 9686 9922 116 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L1 388154 388357 108 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 993015 993194 109 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-X 186609 186935 101 - . . scaffold365 GLEAN mRNA 162342 187868 0.996603 - . ID=CGI_10022722; scaffold964 WUBlastX LINE_RTE-X 139550 139729 109 - . . . . . -1 -1 -1 . . . scaffold1839 WUBlastX LINE_L1-Tx1 69226 69582 26 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1-Tx1 939636 939869 97 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold625 WUBlastX LINE_L2 558336 558461 43 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L2 194136 194414 97 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LTR_Ngaro 269847 270263 62 - . . . . . -1 -1 -1 . . . scaffold36286 WUBlastX LTR_DIRS 14536 14748 119 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 741875 742381 110 - . . . . . -1 -1 -1 . . . C32778 WUBlastX LTR_Gypsy 7102 7221 50 - . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Gypsy 104174 104689 80 + . . scaffold1851 GLEAN mRNA 98297 105350 0.387171 - . ID=CGI_10005104; scaffold546 WUBlastX DNA_hAT-Tip100 394012 394245 116 - . . scaffold546 GLEAN mRNA 387340 395941 0.945058 - . ID=CGI_10021003; scaffold626 WUBlastX DNA_IS4EU 314664 315428 101 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_RTE-X 55737 55955 48 - . . . . . -1 -1 -1 . . . scaffold693 WUBlastX LINE_RTE-BovB 10175 10360 55 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold693 WUBlastX LINE_RTE-BovB 10491 10583 37 + . . scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold1703 WUBlastX LINE_RTE-BovB 419399 419611 68 + . . scaffold1703 GLEAN mRNA 410303 422392 0.738334 - . ID=CGI_10023058; scaffold351 WUBlastX DNA_Sola 314936 315118 78 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold983 WUBlastX LINE_Jockey 171508 171591 28 + . . . . . -1 -1 -1 . . . scaffold125 WUBlastX LTR_Gypsy 314 481 131 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Ngaro 184086 184358 109 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Kolobok-IS4 462974 463072 24 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_IS4EU 67360 67542 33 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_IS4EU 68033 68272 42 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold1774 WUBlastX DNA_IS4EU 29549 29617 41 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 61683 62504 109 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_L1 280686 281090 67 + . . scaffold767 GLEAN mRNA 267592 288448 0.433091 + . ID=CGI_10014846; scaffold453 WUBlastX DNA_Kolobok 302351 302491 44 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold35438 WUBlastX DNA_MuDR 14442 14678 78 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold713 WUBlastX LINE_RTE-BovB 41691 41852 47 - . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_RTE-X 401298 401672 48 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-X 425695 426153 40 - . . scaffold203 GLEAN mRNA 422258 430817 0.3597 + . ID=CGI_10021072; scaffold847 WUBlastX LINE_RTE-X 708748 709101 63 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 69173 69325 38 - . . . . . -1 -1 -1 . . . scaffold36768 WUBlastX LINE_L1-Tx1 36494 36679 55 + . . scaffold36768 GLEAN mRNA 29335 37620 1 + . ID=CGI_10002113; C12274 WUBlastX LTR_Pao 1 189 137 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LTR_Copia 221437 221568 20 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold773 WUBlastX LINE_L1 283424 283702 25 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_CR1 607724 608179 130 + . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LTR_Ngaro 15768 16325 81 + . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Ngaro 11650 12144 75 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_Ngaro 294425 294535 26 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_Ngaro 294570 294848 41 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LTR_Ngaro 42791 43009 43 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LTR_Ngaro 43083 43241 46 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Ngaro 43285 43419 45 + . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_Gypsy 49629 50147 86 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold1782 WUBlastX DNA_TcMar-Fot1 88765 88998 74 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX DNA_Kolobok 132613 132813 40 - . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_RTE-X 605826 606005 46 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX DNA_NOF 35648 36712 54 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_R2 409942 410019 23 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold42930 WUBlastX LINE_L1-Tx1 197459 197776 115 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX DNA_hAT-Tip100 30892 30993 28 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold410 WUBlastX LINE_L1-Tx1 265598 265690 28 + . . scaffold410 GLEAN mRNA 261101 270903 0.399222 + . ID=CGI_10020632; scaffold113 WUBlastX LTR_DIRS 146150 146497 116 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_L2 90041 90181 28 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_CR1-L2 354626 354796 41 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_DIRS 649684 650010 138 + . . scaffold280 GLEAN mRNA 645758 661781 0.996424 - . ID=CGI_10024601; scaffold157 WUBlastX LTR_Ngaro 3523 3717 92 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LTR_Gypsy 193820 194170 157 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 179618 180154 32 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Marin 246201 246422 83 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_Kolobok-IS4 430622 431434 48 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok 957257 957385 39 + . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX LINE_L1 77968 78339 139 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_Penelope 128562 129008 79 + . . scaffold1589 GLEAN mRNA 111686 137363 0.668529 + . ID=CGI_10024108; scaffold517 WUBlastX DNA_Maverick 219230 219619 89 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX DNA_Maverick 219630 219827 20 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 1206986 1207369 158 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 199909 200280 21 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold1726 WUBlastX LINE_CR1-L2 361562 361789 41 + . . . . . -1 -1 -1 . . . scaffold1181 WUBlastX LTR_Ngaro 35455 36108 114 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Ngaro 301037 301159 50 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold160 WUBlastX DNA_Crypton 129240 129638 110 + . . . . . -1 -1 -1 . . . scaffold331 WUBlastX DNA_En-Spm 37626 38060 116 - . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX LTR_Gypsy 33702 33941 20 - . . scaffold1884 GLEAN mRNA 33208 35112 1 - . ID=CGI_10012008; scaffold1711 WUBlastX DNA_IS4EU 335677 335916 53 - . . . . . -1 -1 -1 . . . scaffold1596 WUBlastX DNA_hAT-Ac 3518 3835 71 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LINE_Penelope 85484 85759 135 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_I 388861 388986 28 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX LINE_RTE-X 41464 41541 27 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX DNA_TcMar-Pogo 166054 166257 55 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_L1-Tx1 249000 249107 59 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LINE_L1-Tx1 109582 110226 220 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LINE_L1-Tx1 110956 112152 362 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_En-Spm 387422 387925 243 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LTR_Gypsy 125255 125737 40 - . . . . . -1 -1 -1 . . . C34174 WUBlastX LTR_Ngaro 1834 3309 906 + . . C34174 GLEAN mRNA 745 7629 0.544712 - . ID=CGI_10001232; scaffold43388 WUBlastX LINE_L2 239653 240570 284 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L2 240834 241091 145 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L2 241087 241497 239 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L2 241512 241685 52 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L2 241694 241933 30 + . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LTR_Gypsy 68163 69023 580 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Gypsy 323557 323679 45 - . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX LINE_L2 458966 459358 44 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_L2 15681 15878 50 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold241 WUBlastX DNA_NOF 391957 392625 91 - . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold267 WUBlastX DNA_TcMar-Tc2 191097 191312 46 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 368994 369179 149 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_L1-Tx1 577987 578322 71 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L2 219259 220884 929 + . . scaffold126 GLEAN mRNA 215728 221364 0.491639 + . ID=CGI_10019186; scaffold980 WUBlastX LTR_DIRS 573183 574862 992 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_L1-Tx1 358665 359084 177 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 359682 360329 314 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 360328 361275 338 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 361947 362120 30 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold1144 WUBlastX LINE_L2 178362 179777 268 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 39089 39928 532 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Gypsy 227662 230193 983 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Ngaro 83846 84559 396 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 73961 74791 222 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold417 WUBlastX LTR_Gypsy 34006 34935 250 + . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LINE_RTE-X 229148 230131 432 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LINE_RTE-X 230155 230520 237 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LINE_RTE-X 230976 232004 141 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 741818 742252 163 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_DIRS 620923 621420 58 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_L1-Tx1 205852 206475 69 - . . scaffold1869 GLEAN mRNA 201078 208517 1 - . ID=CGI_10009025; scaffold31 WUBlastX LINE_L1-Tx1 14675 14986 164 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold581 WUBlastX LINE_L1-Tx1 275490 275978 116 - . . scaffold581 GLEAN mRNA 217971 276528 0.207483 - . ID=CGI_10013742; scaffold406 WUBlastX LINE_L1 318498 319232 61 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 57646 57867 27 + . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_RTE-X 65955 66047 31 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L1-Tx1 669180 669491 139 - . . scaffold625 GLEAN mRNA 660953 675922 0.820405 - . ID=CGI_10023430; scaffold716 WUBlastX LTR_Ngaro 330445 332019 1068 + . . scaffold716 GLEAN mRNA 317907 344001 0.842692 + . ID=CGI_10014452; scaffold337 WUBlastX LTR_Ngaro 87011 88585 1068 + . . . . . -1 -1 -1 . . . scaffold1644 WUBlastX DNA_Academ 62363 62599 50 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold1749 WUBlastX LTR_Gypsy 38497 38649 49 + . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 14964 15560 320 - . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 15541 15729 81 - . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 12624 12884 74 - . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 12877 12951 24 - . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 12959 13315 167 - . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 13636 13785 116 - . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 13775 14599 347 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LINE_L1-Tx1 130983 131195 21 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold39508 WUBlastX LTR_Pao 49292 49384 20 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Pao 12901 13098 35 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_CR1-L2 528921 529133 86 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L2 774437 774850 162 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold337 WUBlastX RC_Helitron 225075 226148 133 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_R2-Hero 247791 248060 198 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1 930646 930948 38 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1111703 1111795 45 - . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_RTE-BovB 399766 400842 170 + . . . . . -1 -1 -1 . . . scaffold43664 WUBlastX LINE_RTE-X 214179 214898 97 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold1203 WUBlastX LINE_RTE-X 147378 147836 41 - . . . . . -1 -1 -1 . . . scaffold41064 WUBlastX DNA_Sola 98514 98678 23 + . . . . . -1 -1 -1 . . . scaffold722 WUBlastX LTR_Ngaro 302292 303473 819 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_CR1-L2 91931 92092 150 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_CR1-L2 93076 94098 614 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LTR_Pao 176778 178307 694 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_En-Spm 246097 248010 1217 + . . scaffold583 GLEAN mRNA 245420 251821 0.99076 + . ID=CGI_10023613; scaffold43956 WUBlastX LTR_Pao 60927 61571 532 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1153049 1153627 50 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Crypton 520785 520985 81 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Crypton 520982 521131 90 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_DIRS 359320 359532 39 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1 868423 868743 27 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L1 889801 890205 98 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold517 WUBlastX LINE_L1 199200 199403 21 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold1009 WUBlastX DNA_TcMar-Marin 541355 541675 186 - . . . . . -1 -1 -1 . . . scaffold1334 WUBlastX LINE_Penelope 8337 9488 87 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold752 WUBlastX LINE_RTE-X 15591 15773 41 - . . scaffold752 GLEAN mRNA 9483 39806 0.831804 + . ID=CGI_10010038; scaffold54 WUBlastX LTR_Gypsy 80867 81151 48 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold443 WUBlastX LTR_Gypsy 98707 99249 295 - . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LINE_RTE-X 141936 145199 1018 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Gypsy 305139 306395 1134 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; C31762 WUBlastX LINE_L1-Tx1 4316 5074 42 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_DIRS 911102 911698 183 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX RC_Helitron 37169 37273 24 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold351 WUBlastX LINE_Penelope 103402 103536 34 + . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold759 WUBlastX LINE_RTE-X 247867 248406 105 - . . scaffold759 GLEAN mRNA 240053 255917 0.998454 - . ID=CGI_10010781; scaffold3 WUBlastX LINE_RTE-X 893568 894200 155 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_RTE-RTE 35928 36239 163 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_RTE-RTE 37616 37927 163 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold709 WUBlastX DNA_Sola 324851 326029 57 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LINE_L1-Tx1 195000 195257 75 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold240 WUBlastX LINE_L1-Tx1 80900 81283 166 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_CR1-L2 544486 544764 161 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold298 WUBlastX LTR_DIRS 404946 405464 177 - . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LTR_Gypsy 71795 72403 70 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX RC_Helitron 479816 480103 107 + . . . . . -1 -1 -1 . . . scaffold589 WUBlastX DNA_IS4EU 49509 50033 65 + . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LINE_RTE-X 140188 140427 67 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L1-Tx1 334909 335016 20 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 117844 118407 381 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Pao 203675 203848 111 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold934 WUBlastX LTR_Gypsy 160889 162643 405 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 319908 320156 34 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Gypsy-Cigr 31160 31735 196 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy-Cigr 122916 123464 195 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Ngaro 203271 203672 170 - . . scaffold1350 GLEAN mRNA 200904 214641 0.523236 - . ID=CGI_10017304; scaffold38360 WUBlastX LTR_Ngaro 34570 35268 126 + . . . . . -1 -1 -1 . . . C33534 WUBlastX LINE_L2 9789 10268 190 + . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_L2 44009 44488 188 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Gypsy-Cigr 273298 274371 182 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LTR_Gypsy-Cigr 158403 159107 189 - . . scaffold1241 GLEAN mRNA 158229 159365 0.555898 - . ID=CGI_10016428; scaffold4 WUBlastX LINE_RTE-X 357745 358257 117 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX DNA_Maverick 99595 100056 152 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 37036 37434 199 - . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LINE_CR1-L2 19362 19523 69 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 516668 516844 21 + . . . . . -1 -1 -1 . . . C30898 WUBlastX DNA_Crypton 1831 2133 50 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Ngaro 139040 139234 49 + . . . . . -1 -1 -1 . . . scaffold647 WUBlastX DNA_Harbinger 152976 153227 131 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_Kolobok-IS4 350985 351623 111 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 475898 476428 192 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_Proto2 6298 7371 128 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_RTE-BovB 158435 158797 91 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX DNA_En-Spm 4371 4835 130 + . . scaffold57 GLEAN mRNA 3208 18413 0.810616 + . ID=CGI_10020530; scaffold421 WUBlastX LINE_L1 50763 51338 167 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-X 470081 470560 160 + . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_RTE-X 137477 138019 76 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_RTE-X 316296 316385 50 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Ngaro 221320 221538 88 - . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1-Tx1 46114 46485 143 - . . . . . -1 -1 -1 . . . C30608 WUBlastX LTR_Gypsy 503 2050 699 + . . . . . -1 -1 -1 . . . scaffold38056 WUBlastX LINE_L2 45918 46169 52 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LTR_Ngaro 133364 134110 147 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_PiggyBac 157540 159111 176 - . . . . . -1 -1 -1 . . . scaffold38804 WUBlastX LTR_DIRS 44444 44890 173 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 230776 231012 51 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L1-Tx1 93267 94469 36 + . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L1-Tx1 29129 29467 79 - . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L1-Tx1 29616 29807 118 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 560416 563400 1903 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_PiggyBac 535909 536184 75 - . . . . . -1 -1 -1 . . . scaffold36378 WUBlastX LINE_RTE-X 33281 33973 154 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX DNA_Sola 19020 19190 87 + . . . . . -1 -1 -1 . . . C34856 WUBlastX LTR_Gypsy 9539 10372 186 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; C31978 WUBlastX RC_Helitron 4284 4736 274 + . . . . . -1 -1 -1 . . . C31978 WUBlastX RC_Helitron 4900 6372 1111 + . . . . . -1 -1 -1 . . . C31978 WUBlastX RC_Helitron 6790 7098 117 + . . . . . -1 -1 -1 . . . C31978 WUBlastX RC_Helitron 7226 7702 91 + . . . . . -1 -1 -1 . . . C31978 WUBlastX RC_Helitron 7812 8123 213 + . . . . . -1 -1 -1 . . . C31978 WUBlastX RC_Helitron 8119 8787 166 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Gypsy 227290 228966 1167 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Gypsy 229258 230535 826 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_CR1 67825 68373 177 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L2 76383 76913 207 - . . . . . -1 -1 -1 . . . scaffold212 WUBlastX LTR_Pao 1466 1555 24 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 645686 645841 37 - . . . . . -1 -1 -1 . . . scaffold549 WUBlastX LINE_RTE-BovB 59563 59670 55 + . . scaffold549 GLEAN mRNA 50843 62768 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59563 59670 55 + . . scaffold549 GLEAN mRNA 31331 63327 0.976872 + . ID=CGI_10004103; scaffold1141 WUBlastX LTR_Gypsy 23035 24234 414 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LINE_L2 162187 165423 1742 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_L2 159961 160122 117 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold1825 WUBlastX LINE_L2 160256 160714 123 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold38026 WUBlastX LTR_Gypsy 23727 23897 20 + . . . . . -1 -1 -1 . . . scaffold1401 WUBlastX LINE_I 5408 5554 22 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold678 WUBlastX LINE_L1-Tx1 60693 61160 117 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1-Tx1 61192 61488 63 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1-Tx1 61486 61554 29 - . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX DNA_TcMar-Tc1 83685 84008 169 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 1135863 1136438 184 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_hAT 189297 189407 65 + . . scaffold626 GLEAN mRNA 185398 190939 0.996819 + . ID=CGI_10019986; scaffold626 WUBlastX DNA_hAT 187436 188167 167 + . . scaffold626 GLEAN mRNA 185398 190939 0.996819 + . ID=CGI_10019986; scaffold847 WUBlastX LTR_DIRS 509286 509549 189 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold317 WUBlastX LTR_DIRS 487364 487555 62 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_DIRS 487564 487845 125 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_hAT-Ac 362693 363247 143 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX DNA_Harbinger 256780 257388 130 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_TcMar-Tc1 197211 197522 29 + . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-X 32322 32657 161 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LINE_RTE-X 173367 173504 51 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LINE_RTE-X 173824 174429 173 - . . . . . -1 -1 -1 . . . scaffold37678 WUBlastX RC_Helitron 8393 13984 1930 - . . scaffold37678 GLEAN mRNA 3054 19948 0.906607 - . ID=CGI_10002431; scaffold616 WUBlastX LINE_L1-Tx1 395578 396546 143 - . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_L1-Tx1 396552 399353 1739 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy-Cigr 820748 822100 819 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy-Cigr 822342 823757 1244 - . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_Pao 22979 27865 2168 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Ngaro 14725 14865 25 + . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 27925 28611 150 + . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX LTR_Pao 333170 333421 69 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold40680 WUBlastX LINE_CR1-L2 63991 64539 214 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L2 242711 243142 180 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_Sola 754623 756008 247 + . . scaffold383 GLEAN mRNA 742434 758358 1 + . ID=CGI_10023553; scaffold1352 WUBlastX LTR_Foamy 194736 195365 159 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 17471 17818 78 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_Penelope 153900 155210 199 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L1-Tx1 49566 50495 214 - . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_RTE-X 44075 44437 253 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LTR_Gypsy 124324 127791 2459 - . . scaffold305 GLEAN mRNA 114232 133246 0.986225 - . ID=CGI_10019117; scaffold294 WUBlastX LINE_RTE-X 158074 158229 64 - . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LINE_L1-Tx1 99895 100080 72 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 100129 100794 38 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 101117 101392 107 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold1484 WUBlastX LINE_CR1-L2 288264 288728 57 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-BovB 34026 34754 88 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 34026 34754 88 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold354 WUBlastX LTR_Gypsy 36938 37912 336 - . . . . . -1 -1 -1 . . . scaffold839 WUBlastX LTR_Gypsy 93826 93984 27 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_DIRS 344303 344860 173 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX RC_Helitron 315199 316866 211 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 459598 459813 109 - . . . . . -1 -1 -1 . . . C34804 WUBlastX DNA_TcMar-Marin 4291 4668 186 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX DNA_TcMar-Marin 378193 378597 208 - . . . . . -1 -1 -1 . . . scaffold39412 WUBlastX LINE_RTE-X 22799 23173 116 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 2446 2988 117 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX DNA_Maverick 73368 73802 262 - . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_TcMar-Tc1 115629 115769 22 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1-Tx1 614089 615066 196 + . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX DNA_TcMar-Tc1 195934 196677 135 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L2 141027 141218 58 - . . scaffold1174 GLEAN mRNA 122742 144408 0.527772 + . ID=CGI_10026027; scaffold156 WUBlastX LINE_R2-Hero 240837 241619 313 + . . scaffold156 GLEAN mRNA 233811 241733 0.990897 + . ID=CGI_10026484; scaffold156 WUBlastX LINE_R2-Hero 240837 241619 313 + . . scaffold156 GLEAN mRNA 241119 253785 0.986993 - . ID=CGI_10026485; scaffold34192 WUBlastX DNA_Kolobok 2894 3253 102 + . . . . . -1 -1 -1 . . . scaffold34192 WUBlastX DNA_Kolobok 4280 4504 96 + . . . . . -1 -1 -1 . . . scaffold34192 WUBlastX DNA_Kolobok 5418 5660 103 + . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX DNA_TcMar-Pogo 2274 2537 171 - . . . . . -1 -1 -1 . . . C23428 WUBlastX LTR_Ngaro 947 1723 319 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_DIRS 261182 261442 78 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold3 WUBlastX LTR_Ngaro 974350 974796 97 - . . scaffold3 GLEAN mRNA 958982 982969 0.663393 + . ID=CGI_10027317; scaffold1128 WUBlastX DNA_IS4EU 48109 48762 322 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_Harbinger 387295 387786 337 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_Harbinger 13615 14004 227 + . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX LINE_L1 20076 20132 24 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold180 WUBlastX DNA_Maverick 76447 76800 195 + . . . . . -1 -1 -1 . . . scaffold35926 WUBlastX LINE_RTE-X 1108 1530 210 - . . . . . -1 -1 -1 . . . scaffold35926 WUBlastX LINE_RTE-X 1523 1762 45 - . . . . . -1 -1 -1 . . . scaffold40290 WUBlastX LINE_RTE-X 7655 8518 202 - . . scaffold40290 GLEAN mRNA 1168 10080 1 + . ID=CGI_10004018; scaffold1521 WUBlastX DNA_TcMar-Tc1 46779 47021 50 + . . . . . -1 -1 -1 . . . C32578 WUBlastX LINE_L1-Tx1 11203 11355 24 + . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_L1-Tx1 128107 128604 206 + . . scaffold616 GLEAN mRNA 126038 136791 1 + . ID=CGI_10015389; scaffold1817 WUBlastX LINE_CR1-L2 3172 4242 161 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79346 79435 54 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79925 80122 56 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 38248 39003 230 + . . . . . -1 -1 -1 . . . scaffold1489 WUBlastX LTR_Gypsy 155 1180 289 + . . . . . -1 -1 -1 . . . scaffold1489 WUBlastX LTR_Gypsy 1284 1622 54 + . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 185448 186452 142 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_RTE-X 32917 33864 247 - . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_RTE-X 107835 108218 87 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold36748 WUBlastX LINE_RTE-BovB 15154 17010 216 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LINE_RTE-BovB 41855 41989 32 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 78356 78814 175 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 79194 79385 143 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Ngaro 43019 43483 114 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Ngaro 43819 44283 114 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_Proto2 560090 560776 75 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_RTE-X 108143 108346 115 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX DNA_Harbinger 747022 747135 53 - . . scaffold678 GLEAN mRNA 740088 752113 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 747022 747135 53 - . . scaffold678 GLEAN mRNA 742489 752098 0.987721 + . ID=CGI_10026378; scaffold38976 WUBlastX DNA_TcMar-Marin 10731 10946 84 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX DNA_TcMar-Marin 11098 11280 120 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX DNA_TcMar-Marin 11282 11776 167 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold885 WUBlastX LINE_L1-Tx1 1010516 1010851 198 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold1891 WUBlastX DNA_Harbinger 150618 150716 27 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 150850 151023 123 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 151432 151554 75 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold39088 WUBlastX DNA_TcMar-Tc1 40134 40247 20 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 40571 40783 118 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 41232 41369 92 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold97 WUBlastX DNA_P 116299 116439 62 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-BovB 202935 203150 24 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 204110 204385 69 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold163 WUBlastX LINE_RTE-X 1458 1796 84 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L2 1216428 1216985 256 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1216984 1217247 99 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1352 WUBlastX LTR_Gypsy 193938 194693 396 + . . . . . -1 -1 -1 . . . scaffold43036 WUBlastX DNA_hAT-Blackja 151466 151843 69 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold9 WUBlastX DNA_P 108335 108541 65 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_L1-Tx1 4068 4619 153 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_L1-Tx1 4670 5299 116 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 208007 208147 50 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc2 725459 725554 60 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT 791069 791242 32 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Tip100 791756 792079 98 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Tip100 792069 792158 41 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Ngaro 141115 141756 388 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX DNA_TcMar-Tc1 252168 253148 272 - . . . . . -1 -1 -1 . . . scaffold1281 WUBlastX LTR_DIRS 8994 9158 66 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold36684 WUBlastX LTR_Ngaro 20766 21476 126 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LTR_Gypsy 252086 252583 452 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_hAT-hATw 658763 658846 38 + . . scaffold77 GLEAN mRNA 654725 664026 0.999581 + . ID=CGI_10027987; scaffold126 WUBlastX LINE_RTE-X 323162 323941 279 - . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Gypsy 76929 77204 65 - . . . . . -1 -1 -1 . . . scaffold33980 WUBlastX DNA_hAT-Tip100 3883 4992 242 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold1104 WUBlastX LINE_CR1 307608 308279 293 + . . . . . -1 -1 -1 . . . scaffold40270 WUBlastX LTR_Ngaro 6656 7042 193 - . . . . . -1 -1 -1 . . . scaffold292 WUBlastX DNA_TcMar-Marin 38059 38349 116 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold917 WUBlastX DNA_Sola 134339 134881 303 + . . scaffold917 GLEAN mRNA 121193 151265 0.227919 + . ID=CGI_10011083; scaffold1470 WUBlastX LINE_L1 53474 53731 37 - . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LINE_L1 54434 54943 193 - . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Maverick 50876 51160 179 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold1 WUBlastX DNA_TcMar-Tc1 103936 104220 142 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX RC_Helitron 60976 63237 349 + . . scaffold1833 GLEAN mRNA 49110 69658 0.917044 + . ID=CGI_10007300; scaffold1258 WUBlastX LINE_Penelope 549935 550219 175 - . . . . . -1 -1 -1 . . . scaffold39976 WUBlastX LTR_Pao 45019 45186 59 + . . . . . -1 -1 -1 . . . scaffold33610 WUBlastX LTR_Gypsy 11405 12415 461 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Gypsy 497787 499499 422 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 632429 632563 26 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold43170 WUBlastX LINE_L1-Tx1 130053 131423 334 + . . scaffold43170 GLEAN mRNA 114474 133457 0.997994 + . ID=CGI_10009103; scaffold43024 WUBlastX LTR_Ngaro 2476 2676 96 + . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 28939 29172 56 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L1-Tx1 386329 386667 59 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L1-Tx1 387254 387994 174 - . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LINE_L1 331155 332177 419 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX DNA_TcMar-Tc1 377831 378859 444 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_Gypsy 240036 240263 116 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold834 WUBlastX LTR_Gypsy 24904 25158 46 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy 80695 80889 61 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold557 WUBlastX LINE_L1 401965 402090 54 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold531 WUBlastX DNA_TcMar-Tc1 249486 250055 301 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX DNA_TcMar-Tc1 250061 250408 42 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1004659 1005066 261 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_L1-Tx1 365596 365916 43 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX LINE_RTE-X 193863 194846 257 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_CR1-L2 22114 22266 80 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX DNA_TcMar-Tc1 267983 268843 330 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX DNA_TcMar-Tc1 268809 268913 70 + . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_L1 156384 157055 165 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX DNA_Academ 181084 181233 20 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Gypsy-Cigr 3707 4015 113 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy 38345 38698 43 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 122217 122708 67 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Ngaro 150843 151241 144 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1607764 1607997 96 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1608074 1608946 208 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold1610 WUBlastX RC_Helitron 151374 151976 271 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX RC_Helitron 151860 152993 225 - . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX LTR_DIRS 19454 20119 512 + . . . . . -1 -1 -1 . . . scaffold1509 WUBlastX DNA_TcMar-Tc1 63890 64435 165 + . . . . . -1 -1 -1 . . . scaffold1509 WUBlastX DNA_TcMar-Tc1 64392 64859 237 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy-Gmr1 105223 105255 27 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 569223 569360 40 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; C33332 WUBlastX RC_Helitron 1904 2176 48 + . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LTR_Gypsy 97860 99335 547 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 568756 569175 125 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold517 WUBlastX LINE_L1 2245 2706 69 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_L1-Tx1 286422 287933 419 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_TcMar-Pogo 7576 8109 257 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 27173 28726 194 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LINE_L1-Tx1 110270 111268 164 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L1-Tx1 249917 249973 23 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 904902 905255 98 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Gypsy 237129 237221 22 + . . . . . -1 -1 -1 . . . scaffold193 WUBlastX DNA_Kolobok-IS4 98041 99105 502 + . . . . . -1 -1 -1 . . . C22400 WUBlastX LINE_RTE-X 3 1697 451 - . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 66252 66806 164 + . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 67470 67919 242 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 105493 106569 589 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 241582 242142 213 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_TcMar-Tc1 600001 601011 519 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 86928 87467 176 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-BovB 713898 714326 187 + . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold1021 WUBlastX LTR_DIRS 100986 101150 101 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 101520 102215 272 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 102301 102486 73 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 102524 103147 168 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold160 WUBlastX DNA_Maverick 487281 487913 462 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX DNA_Maverick 487998 488036 29 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX DNA_Maverick 488030 488302 124 + . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX DNA_hAT 11459 11650 82 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; C32106 WUBlastX LTR_Pao 8181 8954 649 - . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L1 5376 5585 22 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L1 25843 26595 324 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 1047544 1048293 66 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 959671 961164 439 - . . . . . -1 -1 -1 . . . scaffold35712 WUBlastX LINE_RTE-X 6754 7686 315 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold40134 WUBlastX DNA_Maverick 40993 42090 657 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold184 WUBlastX DNA_Harbinger 143591 144223 472 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Zator 576906 577157 56 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Zator 577269 577508 43 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Zator 577567 577920 172 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Zator 577884 578258 149 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Zator 578260 579057 242 - . . . . . -1 -1 -1 . . . C28510 WUBlastX DNA_Sola 691 837 82 - . . . . . -1 -1 -1 . . . C28510 WUBlastX DNA_Sola 1693 2175 259 - . . . . . -1 -1 -1 . . . C28510 WUBlastX DNA_Sola 3966 4277 213 - . . . . . -1 -1 -1 . . . C28510 WUBlastX DNA_Sola 4718 5008 50 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_RTE-X 104479 104985 104 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold1869 WUBlastX LINE_L1 131184 133424 588 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_L1-Tx1 663456 664289 726 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Gypsy 27220 28362 552 + . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX LTR_Gypsy 100445 100741 43 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LTR_Gypsy 33504 34145 191 + . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 321388 321894 21 - . . . . . -1 -1 -1 . . . scaffold839 WUBlastX LINE_L1 86449 86703 104 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold987 WUBlastX LTR_Gypsy 203252 203722 118 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 236277 237113 150 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 237137 237625 163 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 237588 237839 95 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 237844 238329 231 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 95212 95442 111 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_RTE-X 36528 36995 233 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LTR_Gypsy-Cigr 239297 240532 867 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Gypsy 417673 418422 229 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Gypsy 204500 204949 293 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 682620 682865 33 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_En-Spm 386991 387470 335 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Gypsy 113842 114432 206 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-X 352047 354008 436 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-X 353999 354637 28 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_hAT-Tip100 77973 78131 141 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1 523577 524188 49 - . . . . . -1 -1 -1 . . . scaffold32586 WUBlastX LINE_CR1-L2 8678 8860 55 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_CR1-L2 670444 670584 78 - . . . . . -1 -1 -1 . . . scaffold929 WUBlastX LINE_CR1-L2 124599 124916 43 + . . scaffold929 GLEAN mRNA 116400 138361 0.987262 + . ID=CGI_10006345; scaffold469 WUBlastX LINE_CR1-L2 827361 827750 35 - . . scaffold469 GLEAN mRNA 824216 847987 1 - . ID=CGI_10024698; scaffold41318 WUBlastX LINE_L2 2290 2517 52 + . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LINE_CR1 459269 459649 87 + . . . . . -1 -1 -1 . . . C28310 WUBlastX LINE_CR1 1397 1498 20 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX DNA_En-Spm 874287 874709 20 + . . scaffold121 GLEAN mRNA 873837 879402 0.999211 + . ID=CGI_10025682; scaffold1638 WUBlastX LTR_Gypsy 165244 165471 74 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_DIRS 751182 751355 72 - . . . . . -1 -1 -1 . . . C33864 WUBlastX RC_Helitron 2892 3116 70 + . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_hAT-Hobo 38135 38317 75 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX DNA_IS4EU 90153 90482 39 - . . scaffold67 GLEAN mRNA 72770 90591 0.702383 - . ID=CGI_10018264; scaffold707 WUBlastX DNA_Harbinger 18086 18406 43 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Gypsy 170907 170963 21 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LINE_L1 98323 98445 30 + . . . . . -1 -1 -1 . . . C28748 WUBlastX LINE_L1-Tx1 5249 5794 34 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_TcMar-Fot1 603544 604065 64 + . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LINE_L2 19651 19782 24 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_Penelope 322194 322502 45 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_Penelope 322694 322819 20 + . . . . . -1 -1 -1 . . . C25038 WUBlastX LINE_Penelope 2077 2355 59 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_P 153382 153612 81 - . . . . . -1 -1 -1 . . . scaffold1492 WUBlastX LINE_Penelope 302666 302827 24 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Harbinger 251231 251548 50 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_MuDR 19644 19868 54 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_CR1 64453 65103 51 + . . . . . -1 -1 -1 . . . C23836 WUBlastX LINE_RTE-X 691 1005 84 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-X 155719 156033 84 + . . . . . -1 -1 -1 . . . scaffold39368 WUBlastX LINE_RTE-X 2067 2162 37 - . . . . . -1 -1 -1 . . . C31096 WUBlastX LINE_RTE-X 4637 5020 84 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold339 WUBlastX LINE_RTE-X 155737 155889 50 - . . scaffold339 GLEAN mRNA 146286 166002 0.999828 + . ID=CGI_10008803; scaffold241 WUBlastX LINE_RTE-X 969211 969345 37 - . . . . . -1 -1 -1 . . . scaffold43240 WUBlastX DNA_TcMar-Tc1 142508 142588 23 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-BovB 232486 232662 76 - . . scaffold658 GLEAN mRNA 228316 233174 0.37443 + . ID=CGI_10018968; scaffold1883 WUBlastX LINE_RTE-X 101384 101719 26 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX DNA_Sola 159108 159179 25 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold1237 WUBlastX LINE_Penelope 58089 58157 34 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 397123 397221 63 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold1333 WUBlastX LTR_Copia 11361 11759 38 - . . scaffold1333 GLEAN mRNA 338 23548 0.590765 - . ID=CGI_10009672; scaffold35444 WUBlastX LTR_Gypsy-Cigr 5770 5931 57 - . . scaffold35444 GLEAN mRNA 591 6430 0.999654 - . ID=CGI_10001555; scaffold35806 WUBlastX LINE_L1-Tx1 26301 26447 67 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_CR1 591894 591956 30 - . . . . . -1 -1 -1 . . . scaffold40194 WUBlastX LINE_CR1-L2 29364 29753 20 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_CR1-L2 152948 153400 24 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_CR1 113370 113630 96 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_L2 181913 182167 41 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 66532 66771 40 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 131373 131453 27 + . . . . . -1 -1 -1 . . . C1921 WUBlastX LTR_Gypsy 5 106 63 + . . . . . -1 -1 -1 . . . scaffold38944 WUBlastX LTR_Gypsy 21742 22614 45 + . . scaffold38944 GLEAN mRNA 22468 23617 0.769564 + . ID=CGI_10003070; scaffold1714 WUBlastX LTR_Gypsy 30900 31538 88 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX DNA_IS4EU 223441 224085 57 - . . . . . -1 -1 -1 . . . scaffold42422 WUBlastX LINE_L1-Tx1 139423 140130 33 + . . . . . -1 -1 -1 . . . scaffold1481 WUBlastX LINE_L1-Tx1 9146 9436 50 + . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LINE_L1 37383 37520 50 - . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold525 WUBlastX LINE_L1 50308 50532 67 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 676625 676732 23 + . . . . . -1 -1 -1 . . . scaffold261 WUBlastX LINE_RTE-BovB 4859 4987 56 - . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_RTE-BovB 266449 266577 41 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_RTE-X 442153 442215 25 + . . scaffold492 GLEAN mRNA 440262 450143 0.878616 + . ID=CGI_10024836; scaffold492 WUBlastX LINE_RTE-X 442211 442327 27 + . . scaffold492 GLEAN mRNA 440262 450143 0.878616 + . ID=CGI_10024836; scaffold184 WUBlastX LINE_RTE-X 345508 345741 40 - . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX LINE_RTE-X 134734 134958 63 - . . scaffold43964 GLEAN mRNA 134421 152513 0.996559 - . ID=CGI_10014643; scaffold1237 WUBlastX LINE_Penelope 58041 58157 26 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_TcMar-Tc1 253294 253386 23 - . . scaffold1 GLEAN mRNA 239740 257002 0.998426 - . ID=CGI_10013473; scaffold1097 WUBlastX DNA_TcMar-Tc1 590390 590668 56 - . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold393 WUBlastX LINE_L2 1196901 1197026 39 - . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_CR1 563836 564003 84 + . . scaffold506 GLEAN mRNA 555361 563909 0.886004 + . ID=CGI_10019282; scaffold1882 WUBlastX LINE_CR1 172938 173297 72 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 531895 532503 42 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 298106 298714 42 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L2 35177 35428 86 + . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold1066 WUBlastX LTR_Ngaro 179311 179730 25 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold658 WUBlastX DNA_TcMar-Marin 279032 279148 54 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX DNA_IS4EU 252245 252667 20 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX RC_Helitron 375558 375833 72 + . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LTR_Gypsy 13756 13995 75 + . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX DNA_Harbinger 54025 54168 44 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX DNA_Kolobok 289401 289895 23 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold482 WUBlastX DNA_Kolobok-Hyd 42494 42559 45 + . . scaffold482 GLEAN mRNA 41454 43438 0.427398 + . ID=CGI_10010992; scaffold393 WUBlastX LINE_I-Nimb 177085 177132 20 + . . . . . -1 -1 -1 . . . scaffold42032 WUBlastX LINE_RTE-BovB 125772 126032 34 - . . . . . -1 -1 -1 . . . scaffold42032 WUBlastX LINE_RTE-BovB 126073 126219 44 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LINE_Penelope 49853 50248 73 + . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1 144971 145198 58 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 185839 186039 73 + . . . . . -1 -1 -1 . . . scaffold39572 WUBlastX LINE_RTE-X 63089 63334 28 + . . scaffold39572 GLEAN mRNA 44325 68809 0.785898 - . ID=CGI_10003446; scaffold39804 WUBlastX LINE_RTE-X 2449 2952 31 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX DNA_Maverick 234083 234364 91 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_Maverick 563468 563749 88 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX DNA_TcMar-Tc1 568728 569003 31 + . . . . . -1 -1 -1 . . . scaffold43064 WUBlastX DNA_TcMar-Tc1 167524 167709 86 - . . scaffold43064 GLEAN mRNA 165128 188165 0.499838 + . ID=CGI_10008633; scaffold1062 WUBlastX LINE_CR1 8611 8805 107 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold536 WUBlastX LINE_CR1-L2 88636 88749 47 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 49965 78 - . . scaffold40068 GLEAN mRNA 33497 57280 0.493966 - . ID=CGI_10003835; scaffold1423 WUBlastX LTR_DIRS 424159 424299 68 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Gypsy 682225 682350 22 - . . scaffold1024 GLEAN mRNA 661256 689203 0.701647 - . ID=CGI_10028542; scaffold1100 WUBlastX DNA_Harbinger 81421 81759 71 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Harbinger 176747 176941 94 - . . scaffold1532 GLEAN mRNA 176651 177200 0.889583 - . ID=CGI_10028236; scaffold591 WUBlastX DNA_Harbinger 487155 487280 93 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Harbinger 249084 249302 95 + . . . . . -1 -1 -1 . . . scaffold1751 WUBlastX LTR_Gypsy 175104 175187 21 - . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LTR_Gypsy 23659 23940 122 + . . scaffold35994 GLEAN mRNA 21382 24601 0.722015 + . ID=CGI_10001675; scaffold157 WUBlastX LTR_Gypsy 18113 18220 20 + . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX LTR_Gypsy 8454 8636 68 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Gypsy 673528 674079 45 - . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LINE_R2-Hero 397927 398046 60 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_IS4EU 303222 303416 80 - . . . . . -1 -1 -1 . . . scaffold487 WUBlastX DNA_P 448651 448749 31 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Kolobok-Hyd 82827 82895 32 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1 631021 631101 21 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1 16701 16877 68 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold1061 WUBlastX LINE_RTE-X 112449 112991 70 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_TcMar-Tc1 202082 202204 93 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_L1-Tx1 329146 329397 22 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Gypsy 274150 274494 41 - . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX LINE_CR1-L2 149695 149961 112 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_RTE-BovB 134890 135228 32 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_L2 119409 119480 22 + . . . . . -1 -1 -1 . . . scaffold635 WUBlastX LTR_Gypsy 44873 45652 100 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX DNA_IS4EU 496099 496260 52 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LINE_L1 141667 141888 56 + . . . . . -1 -1 -1 . . . scaffold43184 WUBlastX LINE_RTE-X 196182 196442 60 - . . . . . -1 -1 -1 . . . scaffold33046 WUBlastX DNA_Maverick 11742 11978 71 + . . . . . -1 -1 -1 . . . scaffold37422 WUBlastX DNA_TcMar-Tc1 40801 41403 91 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_Proto2 169122 169271 47 + . . . . . -1 -1 -1 . . . scaffold38750 WUBlastX LINE_RTE-X 3734 3955 53 + . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold1132 WUBlastX DNA_TcMar-Tc1 210572 210829 99 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold976 WUBlastX DNA_TcMar-Tc1 49263 49634 99 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold37422 WUBlastX DNA_TcMar-Tc1 1771 1992 76 - . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1-Tx1 139681 139953 107 - . . . . . -1 -1 -1 . . . scaffold41136 WUBlastX LINE_L1-Tx1 89571 89954 56 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1-L2 650570 650710 22 - . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX LINE_L2 39537 39596 21 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Copia 79053 79100 24 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Copia 595315 595395 26 + . . scaffold1589 GLEAN mRNA 592118 603104 0.965132 - . ID=CGI_10024122; scaffold43388 WUBlastX LTR_Gypsy 7990 8412 112 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_L2 127133 127372 110 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L2 33944 34183 62 - . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LTR_Ngaro 188967 189113 61 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 133586 134041 39 - . . . . . -1 -1 -1 . . . scaffold331 WUBlastX DNA_En-Spm 38460 38546 26 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_hAT-Tip100 17449 17703 115 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_L1-Tx1 561094 561264 37 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_Penelope 169695 170294 40 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_NOF 247470 247595 22 + . . scaffold983 GLEAN mRNA 244830 248843 1 - . ID=CGI_10014030; C21242 WUBlastX DNA_TcMar-Marin 415 741 48 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_Penelope 177528 177845 80 - . . . . . -1 -1 -1 . . . scaffold34894 WUBlastX LINE_RTE-BovB 9935 10096 83 + . . . . . -1 -1 -1 . . . scaffold38010 WUBlastX LINE_R2 35852 36349 115 - . . . . . -1 -1 -1 . . . scaffold41034 WUBlastX LTR_DIRS 59281 59448 100 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold962 WUBlastX LINE_L1-Tx1 900959 901105 29 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold587 WUBlastX DNA_TcMar-ISRm1 3017 3547 113 + . . scaffold587 GLEAN mRNA 1966 7737 0.999375 - . ID=CGI_10006887; scaffold1328 WUBlastX LINE_RTE-BovB 100029 100142 77 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LINE_RTE-BovB 100144 100293 60 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_L2 856058 856255 45 - . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LTR_DIRS 115627 116259 67 + . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX DNA_IS4EU 25639 25932 29 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Harbinger 501012 501140 60 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Kolobok 374594 374722 46 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L1-Tx1 772949 773299 69 - . . . . . -1 -1 -1 . . . scaffold37252 WUBlastX LINE_L1-Tx1 17948 18562 53 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_L1-Tx1 155401 155916 72 - . . . . . -1 -1 -1 . . . scaffold487 WUBlastX LINE_L1-Tx1 1 366 62 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_Maverick 636939 637553 103 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 549929 550099 37 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1-Tx1 137379 137720 36 - . . scaffold288 GLEAN mRNA 119793 142586 0.674065 - . ID=CGI_10020658; scaffold1730 WUBlastX LINE_L1-Tx1 69894 70310 65 - . . . . . -1 -1 -1 . . . scaffold894 WUBlastX LINE_L1-Tx1 168859 169287 67 + . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX LINE_L1-Tx1 76409 76864 76 - . . . . . -1 -1 -1 . . . C33658 WUBlastX LINE_L1-Tx1 2486 2899 111 + . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX DNA_Harbinger 20666 20863 72 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_CR1 286339 286536 93 + . . . . . -1 -1 -1 . . . C26108 WUBlastX LINE_L2 2191 2682 91 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LINE_L2 12574 13065 91 + . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold728 WUBlastX LTR_Gypsy 9315 9704 47 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX DNA_Harbinger 67758 68069 104 - . . scaffold698 GLEAN mRNA 47494 76860 0.800424 + . ID=CGI_10020726; scaffold1710 WUBlastX LTR_Gypsy 43930 44007 61 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_IS4EU 513312 513473 41 - . . scaffold363 GLEAN mRNA 509476 539448 0.543882 + . ID=CGI_10019312; scaffold363 WUBlastX DNA_IS4EU 514268 514591 108 - . . scaffold363 GLEAN mRNA 509476 539448 0.543882 + . ID=CGI_10019312; scaffold1808 WUBlastX DNA_IS4EU 46606 46707 30 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX DNA_IS4EU 47988 48071 33 + . . . . . -1 -1 -1 . . . scaffold50 WUBlastX DNA_TcMar-Tc1 176400 176504 26 + . . . . . -1 -1 -1 . . . C30668 WUBlastX LINE_Penelope 6887 7204 66 + . . C30668 GLEAN mRNA 6585 6953 0.481188 + . ID=CGI_10000655; scaffold588 WUBlastX LINE_Penelope 102951 103049 27 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_RTE-X 27751 28095 93 - . . scaffold1794 GLEAN mRNA 20538 42560 0.51959 + . ID=CGI_10019565; scaffold276 WUBlastX LINE_RTE-X 46660 47271 97 + . . . . . -1 -1 -1 . . . scaffold42794 WUBlastX LINE_RTE-X 135187 135411 142 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1-Tx1 154177 154662 78 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_L2 79076 79468 66 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L2 76761 76823 50 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LTR_DIRS 389005 389211 54 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Gypsy 154336 155241 74 - . . scaffold313 GLEAN mRNA 152241 158129 0.999929 - . ID=CGI_10026586; scaffold169 WUBlastX LTR_Gypsy 644412 645092 143 + . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LTR_Gypsy-Cigr 133736 134302 138 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LINE_Jockey 110219 110341 20 + . . . . . -1 -1 -1 . . . scaffold935 WUBlastX LINE_L1-Tx1 113649 114212 84 - . . . . . -1 -1 -1 . . . scaffold42604 WUBlastX LINE_Penelope 176455 176688 128 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_Penelope 917872 918606 100 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 146468 146650 81 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold1671 WUBlastX LINE_RTE-BovB 311154 311468 97 - . . scaffold1671 GLEAN mRNA 303116 311549 0.243132 + . ID=CGI_10015154; scaffold42486 WUBlastX LTR_DIRS 162478 162813 142 + . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LTR_DIRS 264883 265686 117 + . . . . . -1 -1 -1 . . . scaffold43522 WUBlastX LINE_L2 110347 110505 21 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_CR1-L2 866498 866638 75 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_CR1-L2 1070768 1071253 55 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_hAT 362522 363178 110 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Pao 71249 71302 33 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 801968 802639 141 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 231527 232267 94 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 126656 126922 40 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 127022 127144 66 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1532 WUBlastX DNA_IS4EU 485434 485700 38 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 485799 485921 66 + . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX LTR_Gypsy 35974 36333 71 + . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold1221 WUBlastX DNA_Harbinger 210666 211067 136 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_PiggyBac 243011 243178 83 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LINE_RTE-X 83334 83792 84 - . . . . . -1 -1 -1 . . . scaffold1693 WUBlastX DNA_TcMar-Marin 22759 23169 159 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX DNA_Sola 437060 437509 45 + . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX LINE_L1-Tx1 358 1014 121 - . . . . . -1 -1 -1 . . . scaffold941 WUBlastX LINE_L1-Tx1 24022 24219 21 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 255453 255509 25 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_L1-Tx1 1 1005 430 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_L1-Tx1 929 1570 344 - . . . . . -1 -1 -1 . . . C32606 WUBlastX LTR_Gypsy-Cigr 10358 11272 181 + . . . . . -1 -1 -1 . . . C32606 WUBlastX LTR_Gypsy-Cigr 11185 12075 765 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LTR_Ngaro 91263 91796 413 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold280 WUBlastX LINE_RTE-X 407024 408130 468 + . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-X 240516 240815 63 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 18088 19383 691 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_hAT-Blackja 119843 120664 168 + . . scaffold94 GLEAN mRNA 111860 132138 0.804225 + . ID=CGI_10013913; scaffold681 WUBlastX LINE_RTE-X 23639 24352 138 + . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LINE_L1-Tx1 16593 16859 113 - . . . . . -1 -1 -1 . . . scaffold1549 WUBlastX LINE_CR1-L2 47798 48274 103 - . . . . . -1 -1 -1 . . . scaffold35902 WUBlastX LTR_Gypsy 28555 28809 164 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_RTE-X 191984 192475 132 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 233761 233868 20 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_L1-Tx1 223688 223846 54 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Pao 53514 55811 947 - . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy 70072 70656 490 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold101 WUBlastX LINE_L1-Tx1 559704 560819 555 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 561076 561462 210 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 586060 587352 978 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LINE_L1-Tx1 112223 112336 59 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Ngaro 639210 640799 1011 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_CR1-L2 312650 313078 72 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_CR1-L2 1578676 1579086 137 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_CR1 269301 269588 158 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 644584 645393 118 - . . . . . -1 -1 -1 . . . C35952 WUBlastX RC_Helitron 1398 1592 66 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold42 WUBlastX DNA_Kolobok 367449 367706 46 + . . scaffold42 GLEAN mRNA 366625 368271 0.99869 + . ID=CGI_10018915; scaffold1213 WUBlastX DNA_PiggyBac 328475 328867 182 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_DRE 487956 488027 23 - . . . . . -1 -1 -1 . . . scaffold1559 WUBlastX LINE_CR1-L2 55535 56425 550 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L1-Tx1 247089 248225 193 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L1-Tx1 248246 249526 650 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_CR1-L2 4254 4418 47 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LINE_CR1-L2 175975 177228 660 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 308559 309371 286 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 311717 311776 34 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 311159 311323 31 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold469 WUBlastX LTR_Gypsy 186212 186694 177 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Ngaro 312279 312416 58 + . . . . . -1 -1 -1 . . . C31724 WUBlastX LTR_Gypsy 4511 5347 150 - . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy 47206 47472 199 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_L1-Tx1 270745 270807 23 + . . . . . -1 -1 -1 . . . C14210 WUBlastX LINE_RTE-BovB 5 241 165 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_RTE-X 329928 330347 122 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_TcMar-Tc1 276034 276102 22 + . . scaffold385 GLEAN mRNA 273365 289522 0.998167 - . ID=CGI_10011601; scaffold385 WUBlastX DNA_TcMar-Tc1 276655 276936 99 + . . scaffold385 GLEAN mRNA 273365 289522 0.998167 - . ID=CGI_10011601; scaffold43634 WUBlastX LTR_Gypsy-Cigr 178388 178516 42 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LTR_Gypsy-Cigr 178599 178910 128 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_CR1-L2 97710 98096 92 - . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LINE_CR1 112619 112885 178 + . . . . . -1 -1 -1 . . . scaffold41772 WUBlastX LTR_Gypsy 98899 99348 39 + . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX DNA_Crypton 84502 84984 160 + . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LTR_Gypsy 45196 45354 69 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold41834 WUBlastX RC_Helitron 46737 47066 105 + . . . . . -1 -1 -1 . . . scaffold1010 WUBlastX DNA_hAT-Tip100 42741 42974 179 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX DNA_IS4EU 223465 223776 67 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX DNA_IS4EU 224621 224914 28 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1 131353 131889 68 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_MuDR 589504 589641 56 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold664 WUBlastX LTR_Ngaro 301352 301555 33 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 104076 104297 100 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX DNA_Maverick 63231 63512 103 - . . . . . -1 -1 -1 . . . scaffold1811 WUBlastX LINE_RTE-X 99691 99831 27 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX DNA_Sola 239098 239502 134 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX DNA_Sola 240288 240434 31 - . . scaffold695 GLEAN mRNA 240354 243330 0.990093 - . ID=CGI_10023276; scaffold1719 WUBlastX LINE_L1-Tx1 8242 8625 25 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_RTE-X 125415 125771 56 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1 497459 497776 120 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_L1-Tx1 175097 177076 828 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_L1-Tx1 177021 177431 169 + . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_CR1-L2 43892 44488 168 + . . . . . -1 -1 -1 . . . scaffold43562 WUBlastX DNA_TcMar-Tc1 169089 169313 115 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 169089 169313 115 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold595 WUBlastX LINE_L2 64303 64515 115 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 767 1102 92 + . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L1 94216 94335 36 - . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_TcMar-Fot1 88795 89169 36 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_P 414270 414977 85 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_RTE-X 290726 290917 86 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_RTE-X 290919 291188 73 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX DNA_Sola 437132 438127 89 + . . . . . -1 -1 -1 . . . scaffold33904 WUBlastX LINE_RTE-X 4455 4922 136 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LTR_Gypsy 121010 122749 1408 + . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LINE_RTE-BovB 17240 18754 1362 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 100672 101025 181 + . . . . . -1 -1 -1 . . . scaffold42508 WUBlastX LTR_Copia 134329 134508 87 + . . scaffold42508 GLEAN mRNA 132335 147112 0.99201 - . ID=CGI_10007033; scaffold113 WUBlastX LTR_Gypsy 540663 541175 24 + . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX DNA_Crypton 8487 9080 74 + . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX DNA_Crypton 9083 9496 40 + . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX DNA_Harbinger 17177 17428 88 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1 856173 856526 52 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_RTE-X 147843 148202 198 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LINE_RTE-X 316720 317754 30 - . . . . . -1 -1 -1 . . . scaffold387 WUBlastX DNA_Sola 23319 23768 198 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Gypsy-Cigr 54793 55026 34 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX RC_Helitron 14808 15149 103 - . . . . . -1 -1 -1 . . . scaffold39500 WUBlastX LTR_Gypsy 19928 20320 385 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LTR_Gypsy-Cigr 62523 66182 1378 - . . scaffold40638 GLEAN mRNA 61308 67362 0.755375 - . ID=CGI_10004287; scaffold44008 WUBlastX LTR_Gypsy-Cigr 27317 27886 60 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Ngaro 420142 420363 62 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Ngaro 420377 420811 73 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_hAT-Tip100 206653 207174 68 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_hAT-Tip100 207876 208199 136 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_Gypsy 9025 9708 213 - . . . . . -1 -1 -1 . . . scaffold41628 WUBlastX LINE_L1-Tx1 97618 97893 145 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_Kolobok 814132 814386 51 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold42656 WUBlastX LINE_Penelope 1759 1947 22 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_RTE-X 369956 370591 112 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 624360 624728 166 + . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX DNA_Maverick 131001 131582 158 - . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX DNA_Maverick 132975 133898 443 - . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX DNA_Maverick 133897 135264 368 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_CR1-L2 29196 29336 51 + . . . . . -1 -1 -1 . . . C28006 WUBlastX LINE_CR1-L2 3829 4014 20 - . . . . . -1 -1 -1 . . . C31246 WUBlastX LTR_Ngaro 8231 8326 56 - . . . . . -1 -1 -1 . . . scaffold1824 WUBlastX LTR_DIRS 96996 97433 20 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 386995 387534 231 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_L1-Tx1 10294 10956 176 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_PiggyBac 91646 91822 61 + . . scaffold1703 GLEAN mRNA 88691 94932 1 + . ID=CGI_10023040; scaffold22 WUBlastX LINE_RTE-X 882221 883114 106 - . . scaffold22 GLEAN mRNA 852632 884943 0.996367 + . ID=CGI_10028880; scaffold40752 WUBlastX LINE_RTE-X 83253 83486 109 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX DNA_Sola 521456 521959 133 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_TcMar-Tc1 435167 435682 161 - . . scaffold286 GLEAN mRNA 423114 437338 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 435167 435682 161 - . . scaffold286 GLEAN mRNA 433158 447481 0.525246 + . ID=CGI_10015974; scaffold1631 WUBlastX LTR_Pao 166002 167453 1164 - . . scaffold1631 GLEAN mRNA 163195 172842 0.969546 - . ID=CGI_10007204; scaffold1009 WUBlastX LTR_Gypsy 1324145 1325071 331 - . . . . . -1 -1 -1 . . . C33580 WUBlastX LTR_Pao 9745 9981 223 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 179450 179740 139 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LTR_Gypsy 87960 88322 201 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 209327 209677 197 + . . . . . -1 -1 -1 . . . C36172 WUBlastX DNA_IS4EU 1 420 103 - . . . . . -1 -1 -1 . . . C36172 WUBlastX DNA_IS4EU 983 1069 46 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 108672 108851 132 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX DNA_TcMar-Marin 73649 73732 34 - . . scaffold352 GLEAN mRNA 55040 89183 0.972718 + . ID=CGI_10012244; scaffold392 WUBlastX LTR_Ngaro 303980 304324 176 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LINE_RTE-X 243798 244466 177 + . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LINE_L1-Tx1 5483 6112 102 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LINE_L1-Tx1 6201 7418 483 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LINE_L1-Tx1 7385 8356 380 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LINE_L1-Tx1 8340 9032 407 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LINE_L1-Tx1 9052 9270 144 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_CR1-L2 89012 89278 152 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L2 10179 10622 117 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_Jockey 254832 255227 160 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Harbinger 403774 404304 220 + . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold34192 WUBlastX DNA_Kolobok 2972 3253 112 + . . . . . -1 -1 -1 . . . scaffold34192 WUBlastX DNA_Kolobok 3679 3762 42 + . . . . . -1 -1 -1 . . . scaffold34192 WUBlastX DNA_Kolobok 4229 4498 21 + . . . . . -1 -1 -1 . . . scaffold34192 WUBlastX DNA_Kolobok 4918 5127 33 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_Penelope 69546 69809 49 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_Penelope 69884 70141 134 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LINE_RTE-X 117060 117377 44 + . . . . . -1 -1 -1 . . . scaffold1140 WUBlastX DNA_Crypton 3306 3932 152 + . . . . . -1 -1 -1 . . . scaffold1140 WUBlastX DNA_Crypton 3982 4227 86 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX DNA_IS4EU 18104 18541 68 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX DNA_IS4EU 18594 19103 64 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX DNA_IS4EU 19075 19227 37 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_Penelope 273644 273952 25 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 738475 738615 69 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold58 WUBlastX LINE_L1-Tx1 738630 738845 31 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold402 WUBlastX LTR_DIRS 388 1032 216 - . . . . . -1 -1 -1 . . . scaffold707 WUBlastX LTR_Gypsy 2601 2897 85 + . . . . . -1 -1 -1 . . . scaffold707 WUBlastX LTR_Gypsy 4422 5054 616 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_RTE-BovB 139016 140464 1949 - . . scaffold1409 GLEAN mRNA 123560 153776 0.210676 - . ID=CGI_10013783; scaffold1409 WUBlastX LINE_RTE-BovB 140466 140522 41 - . . scaffold1409 GLEAN mRNA 123560 153776 0.210676 - . ID=CGI_10013783; scaffold1179 WUBlastX LTR_Gypsy 23544 23819 54 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold471 WUBlastX LTR_Gypsy 268812 270011 229 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 94413 94610 42 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LTR_DIRS 152154 152423 126 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Copia 515139 516779 202 + . . . . . -1 -1 -1 . . . scaffold635 WUBlastX LTR_Gypsy 115861 116391 221 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy 116354 116488 98 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold1174 WUBlastX LINE_RTE-X 32118 32396 89 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 44111 47200 2116 + . . . . . -1 -1 -1 . . . scaffold450 WUBlastX DNA_hAT-Tip100 154937 155314 67 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LINE_CR1 315036 315761 237 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LINE_L2 299944 300300 277 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 292329 292538 84 - . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LINE_L1 5340 5978 252 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Ngaro 272363 273193 159 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 759826 760356 242 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_CR1 330845 331324 51 + . . . . . -1 -1 -1 . . . scaffold36748 WUBlastX LINE_CR1-L2 7170 7271 24 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy 279934 280200 77 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Gypsy 496229 496630 201 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Gypsy 496645 496842 100 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 646695 647144 168 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_TcMar-Marin 185935 186333 96 + . . scaffold43844 GLEAN mRNA 182095 193587 0.917611 + . ID=CGI_10013151; scaffold896 WUBlastX LINE_L1-Tx1 162174 162500 89 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX LINE_RTE-X 105479 107569 1253 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold43150 WUBlastX LINE_RTE-X 107964 109241 872 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold789 WUBlastX LTR_Gypsy 316698 317027 37 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 319085 319258 89 + . . . . . -1 -1 -1 . . . scaffold30818 WUBlastX LTR_Gypsy 7926 8132 57 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_hAT-Tip100 33450 33650 42 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_Kolobok-IS4 69559 69696 37 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_Kolobok-IS4 69711 70049 148 + . . . . . -1 -1 -1 . . . scaffold1335 WUBlastX LINE_Penelope 12557 13180 96 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold1541 WUBlastX LINE_L1 465981 466445 274 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-BovB 17025 17585 280 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Pao 170964 176408 2249 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 32397 32705 199 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold804 WUBlastX LTR_Gypsy 336596 337423 208 + . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LTR_Gypsy 192015 193082 228 - . . scaffold1277 GLEAN mRNA 180148 200196 1 + . ID=CGI_10008024; scaffold1474 WUBlastX LTR_Ngaro 7882 8691 159 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_CR1 365337 365774 92 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_DIRS 490035 490112 35 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_DIRS 490967 491449 26 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_DIRS 491458 491991 126 + . . . . . -1 -1 -1 . . . scaffold37760 WUBlastX LTR_DIRS 20866 21078 92 - . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold402 WUBlastX LTR_Gypsy 6548 7417 286 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 312409 313419 272 + . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX DNA_hAT-hATw 73135 74322 122 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_Proto2 197937 198623 79 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L2-Hydra 197931 198494 85 + . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX DNA_hAT-Tip100 40331 40813 127 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LINE_L2 259229 259279 26 + . . scaffold1792 GLEAN mRNA 252899 271519 0.999949 - . ID=CGI_10012749; scaffold377 WUBlastX LINE_CR1 63350 63682 61 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 347420 351349 2705 + . . scaffold1077 GLEAN mRNA 344081 378528 0.82291 + . ID=CGI_10017829; scaffold301 WUBlastX LINE_L1 1079136 1080632 210 + . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX LINE_L1-Tx1 329889 330302 48 - . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX LINE_L1-Tx1 330337 330546 61 - . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX LINE_L1-Tx1 330555 330764 118 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L1-Tx1 89301 89477 43 - . . . . . -1 -1 -1 . . . C32176 WUBlastX LTR_Pao 10434 10595 62 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_Maverick 178825 179424 316 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_CR1-L2 150820 151293 224 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 254313 254486 37 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_RTE-X 5599 5763 36 + . . . . . -1 -1 -1 . . . scaffold415 WUBlastX DNA_Kolobok-IS4 4629 4916 39 + . . . . . -1 -1 -1 . . . scaffold415 WUBlastX DNA_Kolobok-IS4 4937 5575 266 + . . . . . -1 -1 -1 . . . scaffold35902 WUBlastX LINE_L1 27520 28107 310 + . . scaffold35902 GLEAN mRNA 22250 28263 0.990718 - . ID=CGI_10001652; scaffold70 WUBlastX LINE_L1 335232 335288 30 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1-Tx1 569610 569813 83 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_CR1-L2 151278 151469 35 + . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LTR_DIRS 521887 522024 45 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LINE_CR1-L2 59187 59348 26 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 322599 322844 46 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Harbinger 88734 89150 120 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Harbinger 89454 89684 28 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Ngaro 222882 223574 293 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Gypsy 497366 497734 40 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_DIRS 297291 297770 215 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_DIRS 297781 298134 118 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX DNA_TcMar-Tc1 166585 166671 48 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_CR1-L2 736542 736811 183 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold1241 WUBlastX LINE_RTE-X 118814 119353 111 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_L1-Tx1 362560 363453 140 - . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LINE_RTE-X 6151 6972 249 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79459 79560 45 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy 278186 278545 24 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 375586 375948 75 - . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX LINE_L1-Tx1 54032 54496 86 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 217988 218392 77 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 313626 314117 184 - . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX LINE_RTE-X 5046 5264 76 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Ngaro 234498 234683 98 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_RTE-X 70600 71295 234 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold42770 WUBlastX LINE_L1-Tx1 85400 86122 198 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 86630 86812 28 + . . . . . -1 -1 -1 . . . scaffold43130 WUBlastX LINE_RTE-X 204262 204864 319 - . . . . . -1 -1 -1 . . . scaffold43130 WUBlastX LINE_RTE-X 204843 204980 61 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX DNA_Crypton 101224 101730 231 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX DNA_Crypton 101875 102009 45 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX DNA_Crypton 102240 102851 145 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_RTE-BovB 197983 198147 43 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_RTE-BovB 428236 428400 94 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_RTE-BovB 428423 429052 354 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 171339 172022 50 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LTR_Gypsy 306501 306614 27 - . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold471 WUBlastX LTR_Gypsy 349788 350228 47 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_RTE-X 99539 99712 113 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 319837 320208 103 - . . . . . -1 -1 -1 . . . scaffold474 WUBlastX RC_Helitron 104181 104453 97 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1-Tx1 736393 736770 200 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1-Tx1 736829 736921 53 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1-Tx1 736941 737507 113 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 910919 911098 113 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 911954 912025 33 - . . . . . -1 -1 -1 . . . scaffold42866 WUBlastX LINE_L1 190977 191756 431 + . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX LTR_Ngaro 113943 114569 316 + . . . . . -1 -1 -1 . . . scaffold509 WUBlastX DNA_TcMar-Tc1 561247 562266 391 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 263278 263364 33 - . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LTR_DIRS 1199 1477 150 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_En-Spm 187518 187877 64 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold38026 WUBlastX LTR_Gypsy 26921 27808 26 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold396 WUBlastX LTR_Ngaro 143541 143732 82 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold396 WUBlastX LTR_Ngaro 143749 144321 407 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold38654 WUBlastX LINE_Penelope 33826 35340 260 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L1-Tx1 365294 365515 45 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold457 WUBlastX LTR_Pao 90056 90817 98 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 184510 184566 33 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 60128 60439 124 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Gypsy 257444 257473 28 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_L2 408547 410772 265 + . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LINE_RTE-BovB 68798 69610 151 + . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_L1-Tx1 241574 241777 79 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_CR1 244032 245117 490 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 445256 446449 544 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_RTE-X 448018 448314 26 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_RTE-X 448304 449314 438 + . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LTR_Ngaro 89740 90054 154 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 223980 224282 209 - . . . . . -1 -1 -1 . . . scaffold1553 WUBlastX DNA_Kolobok-IS4 73541 73768 27 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX RC_Helitron 92435 92803 165 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 393684 394595 159 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-BovB 485405 485560 97 + . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 26967 27434 40 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 921442 922008 243 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 921959 922708 322 + . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LTR_Gypsy 66624 67109 27 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold22 WUBlastX LTR_Pao 1073172 1073321 78 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold37408 WUBlastX LTR_DIRS 4553 5122 466 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_RTE-X 84332 84646 41 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold481 WUBlastX LTR_Gypsy-Cigr 239584 240312 490 - . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 18862 20121 616 + . . . . . -1 -1 -1 . . . scaffold33876 WUBlastX DNA_Maverick 9012 9488 264 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_CR1 275047 275301 63 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 548380 548436 30 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 510795 510980 54 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX RC_Helitron 356951 357322 205 + . . . . . -1 -1 -1 . . . C30862 WUBlastX DNA_hAT-hATw 1387 3246 602 + . . . . . -1 -1 -1 . . . scaffold38974 WUBlastX LTR_Pao 6264 7322 695 + . . . . . -1 -1 -1 . . . scaffold935 WUBlastX LINE_L1-Tx1 111934 113427 128 - . . . . . -1 -1 -1 . . . scaffold935 WUBlastX LINE_L1-Tx1 113459 113710 74 - . . . . . -1 -1 -1 . . . scaffold935 WUBlastX LINE_L1-Tx1 113661 114056 257 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy 81199 81288 31 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold1532 WUBlastX LTR_Gypsy-Cigr 651666 651845 103 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy-Cigr 652464 652826 175 - . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX DNA_En-Spm 21262 22257 732 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX DNA_Harbinger 36972 37076 50 - . . scaffold44008 GLEAN mRNA 36940 62806 0.508026 - . ID=CGI_10015282; scaffold42674 WUBlastX LINE_RTE-X 64508 64735 32 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 64773 66320 479 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1251479 1252366 797 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 767557 768972 648 + . . . . . -1 -1 -1 . . . scaffold33352 WUBlastX LINE_L2 12887 14059 739 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LINE_CR1 150387 151460 451 - . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX DNA_TcMar-Fot1 160574 161158 384 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_L1-Tx1 131353 131892 53 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy-Cigr 268553 268960 93 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy-Cigr 269365 269841 346 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_Gypsy 49056 49472 41 - . . . . . -1 -1 -1 . . . C31978 WUBlastX RC_Helitron 7794 8171 191 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX DNA_PiggyBac 318004 319614 885 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Sola 248686 249045 159 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Sola 250887 251120 56 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 136523 137239 74 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold664 WUBlastX LTR_Copia 520896 521102 80 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 69088 69276 23 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_Penelope 549096 549446 52 - . . . . . -1 -1 -1 . . . C2209 WUBlastX LTR_Pao 3 107 86 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 80374 80406 23 + . . . . . -1 -1 -1 . . . scaffold43692 WUBlastX LINE_CR1 134345 134422 23 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1-L2 320821 320964 26 + . . scaffold204 GLEAN mRNA 318709 324303 0.610548 - . ID=CGI_10026103; scaffold1286 WUBlastX LINE_CR1 114432 114674 61 - . . scaffold1286 GLEAN mRNA 98601 123345 0.396375 - . ID=CGI_10009514; scaffold1018 WUBlastX LTR_Gypsy 232398 232727 52 + . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_En-Spm 39188 39460 64 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_DIRS 344931 345293 59 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_DIRS 344931 345047 66 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LTR_DIRS 114155 114388 24 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_Ngaro 7990 8247 47 - . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L2 59171 59329 61 + . . . . . -1 -1 -1 . . . scaffold1266 WUBlastX LTR_Ngaro 61521 61688 70 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_Kolobok-IS4 550932 551504 38 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold415 WUBlastX DNA_Kolobok-IS4 3541 3933 50 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX DNA_IS4EU 53807 54112 53 + . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_Kolobok 13737 13838 36 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_Kolobok 13923 14024 42 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX DNA_TcMar-Fot1 28566 28877 73 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Ngaro 127824 127934 68 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Ngaro 239998 240351 58 - . . . . . -1 -1 -1 . . . scaffold952 WUBlastX LTR_Ngaro 10078 10275 74 - . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX LINE_CR1 28925 29329 73 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold1656 WUBlastX LINE_Penelope 12372 12623 57 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1-Tx1 737295 737345 22 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L1 879329 879583 44 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LINE_L1 2478 3119 43 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_L1 106011 106652 43 + . . scaffold541 GLEAN mRNA 106056 107192 0.777728 + . ID=CGI_10022378; scaffold1578 WUBlastX DNA_PiggyBac 40796 41050 70 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_RTE-BovB 2832 2960 29 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_RTE-BovB 2957 3085 21 - . . . . . -1 -1 -1 . . . C34726 WUBlastX DNA_Maverick 9908 10402 42 + . . C34726 GLEAN mRNA 9188 12912 0.93708 - . ID=CGI_10001353; scaffold41970 WUBlastX LINE_RTE-BovB 70760 71140 33 + . . scaffold41970 GLEAN mRNA 69893 74463 0.996819 + . ID=CGI_10005887; scaffold1704 WUBlastX LINE_RTE-RTE 127147 127392 64 - . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LINE_RTE-X 23307 23501 28 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_RTE-X 73262 73519 38 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold672 WUBlastX LINE_RTE-X 256214 256456 71 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 324744 325073 64 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_RTE-X 1761 2060 24 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX LINE_RTE-X 94433 94579 58 - . . . . . -1 -1 -1 . . . scaffold764 WUBlastX LINE_RTE-X 20735 20944 41 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_RTE-X 51277 51423 76 - . . scaffold698 GLEAN mRNA 47494 76860 0.800424 + . ID=CGI_10020726; scaffold621 WUBlastX DNA_Sola 39930 40178 69 + . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_RTE-X 218555 218845 73 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 358122 358286 46 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L2 450514 451032 46 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold40442 WUBlastX LINE_L2 85610 86239 40 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LINE_CR1-L2 283944 284396 61 - . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX LINE_CR1 52389 52958 76 - . . . . . -1 -1 -1 . . . C30504 WUBlastX LINE_L2 5258 5803 58 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_hAT-Tip100 17874 18272 68 + . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LTR_Pao 73502 73921 23 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_L2 37740 38174 51 + . . scaffold236 GLEAN mRNA 37193 44540 0.565289 + . ID=CGI_10018135; scaffold513 WUBlastX LTR_Ngaro 147938 148111 84 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LTR_Ngaro 472233 472652 24 + . . . . . -1 -1 -1 . . . scaffold1366 WUBlastX LTR_Gypsy 31635 32252 50 + . . scaffold1366 GLEAN mRNA 30390 31955 0.743724 + . ID=CGI_10012283; scaffold1647 WUBlastX LTR_Gypsy 9058 9408 42 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 397485 397691 44 - . . scaffold354 GLEAN mRNA 397434 397808 0.999212 - . ID=CGI_10025719; scaffold241 WUBlastX DNA_TcMar-Tc2 288022 288378 76 - . . scaffold241 GLEAN mRNA 288013 288459 0.999802 - . ID=CGI_10025101; scaffold85 WUBlastX LINE_R2-Hero 446709 446792 20 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 597845 598105 90 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX LTR_Gypsy 169390 169509 29 - . . . . . -1 -1 -1 . . . scaffold1247 WUBlastX LINE_L1-Tx1 112766 113230 25 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold1631 WUBlastX LINE_L1 10237 10323 20 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1-Tx1 99539 99787 56 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold616 WUBlastX LINE_Penelope 401326 401475 49 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_Penelope 459307 459585 37 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX DNA_TcMar-Marin 445486 445842 42 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 328629 328691 25 + . . scaffold101 GLEAN mRNA 308692 328638 0.999351 + . ID=CGI_10021645; scaffold43526 WUBlastX LINE_RTE-X 38453 38632 26 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold43406 WUBlastX LINE_RTE-BovB 82202 82612 68 - . . scaffold43406 GLEAN mRNA 81497 87547 0.998098 + . ID=CGI_10010210; scaffold1730 WUBlastX DNA_Maverick 115633 115959 64 + . . scaffold1730 GLEAN mRNA 113542 117424 0.494862 - . ID=CGI_10012254; C34726 WUBlastX DNA_Maverick 4077 4226 67 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1-Tx1 24915 25361 37 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_TcMar-Tc1 778385 778807 62 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_L1-Tx1 269126 269554 51 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy 528302 528523 101 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_hAT 189267 189407 55 + . . scaffold626 GLEAN mRNA 185398 190939 0.996819 + . ID=CGI_10019986; scaffold41242 WUBlastX LTR_Pao 28354 28635 42 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_CR1 137574 137897 54 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_CR1 578221 578553 78 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_CR1 58273 58779 42 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_CR1 179770 179850 37 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 471605 471691 20 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold204 WUBlastX LTR_Gypsy 800409 801095 76 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_DIRS 14098 14430 35 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LTR_Ngaro 586934 587095 69 - . . . . . -1 -1 -1 . . . scaffold36716 WUBlastX LINE_L2 23881 24306 83 + . . . . . -1 -1 -1 . . . scaffold1538 WUBlastX LINE_L2 25445 25765 64 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Gypsy 695078 695212 27 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Gypsy 53065 53130 20 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold1080 WUBlastX DNA_IS4EU 247037 247405 88 + . . . . . -1 -1 -1 . . . scaffold35 WUBlastX DNA_Kolobok-IS4 2248 2391 32 - . . . . . -1 -1 -1 . . . scaffold1116 WUBlastX RC_Helitron 28472 28564 30 - . . . . . -1 -1 -1 . . . C9065 WUBlastX DNA_TcMar-Fot1 12 140 85 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Fot1 269590 269940 78 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_MuDR 1072363 1072608 32 + . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold1535 WUBlastX LINE_Penelope 50048 50551 55 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc1 287440 287499 32 - . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_L1 98269 98457 67 - . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold38864 WUBlastX LINE_RTE-BovB 34059 34505 61 - . . . . . -1 -1 -1 . . . scaffold41164 WUBlastX LINE_RTE-X 86755 87042 45 + . . scaffold41164 GLEAN mRNA 83753 104051 0.95986 - . ID=CGI_10004764; scaffold1301 WUBlastX LINE_RTE-X 1244784 1244984 51 + . . scaffold1301 GLEAN mRNA 1240763 1263950 0.99974 - . ID=CGI_10027768; scaffold789 WUBlastX LINE_RTE-X 386771 386962 70 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 224578 224931 31 + . . scaffold631 GLEAN mRNA 219246 234334 0.970776 - . ID=CGI_10014178; scaffold1831 WUBlastX LINE_RTE-X 31785 31892 91 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 31785 31892 91 - . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; C33260 WUBlastX LTR_DIRS 3446 3565 67 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_TcMar-Tigge 259657 259773 32 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_L1-Tx1 194162 194503 63 - . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX LINE_L1-Tx1 78064 78426 83 - . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_L1-Tx1 156414 156716 67 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_TcMar-Tc1 440753 441223 62 - . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold43686 WUBlastX LINE_L1-Tx1 3352 3624 56 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_CR1 274789 275505 31 - . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_CR1 81004 81291 41 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_CR1-L2 87708 87803 35 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_CR1-L2 87833 87934 45 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L2 61181 61420 54 - . . . . . -1 -1 -1 . . . C29980 WUBlastX LINE_L2 5717 5875 28 - . . . . . -1 -1 -1 . . . C29980 WUBlastX LINE_L2 6298 6450 32 - . . . . . -1 -1 -1 . . . scaffold1621 WUBlastX LINE_CR1-L2 1281 1439 21 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1 175623 175706 33 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Ngaro 677521 677778 52 + . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LTR_Gypsy 491488 491823 107 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT 12376 12768 86 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX DNA_hAT-Tip100 111550 111768 59 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold610 WUBlastX LTR_Gypsy 129318 129509 116 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold226 WUBlastX LTR_Gypsy 252331 252423 22 - . . . . . -1 -1 -1 . . . C16120 WUBlastX LTR_Gypsy 208 351 104 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_TcMar-Marin 163349 163597 46 - . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX LTR_Gypsy 75676 76089 90 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LINE_RTE-X 169428 169589 25 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX LINE_RTE-X 69860 69964 40 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold1715 WUBlastX LINE_RTE-X 337575 337763 36 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1376 WUBlastX LINE_RTE-X 36038 36262 65 + . . . . . -1 -1 -1 . . . C29914 WUBlastX LINE_RTE-BovB 1951 2070 23 + . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX DNA_Maverick 30665 30784 29 - . . . . . -1 -1 -1 . . . scaffold32346 WUBlastX DNA_PiggyBac 5733 6059 48 - . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_Sola 4577 4885 97 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy 109040 109258 34 + . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LINE_L2 4724 4963 46 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LINE_L2 4984 5088 20 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LINE_L2 5119 5181 22 - . . . . . -1 -1 -1 . . . scaffold1033 WUBlastX LINE_L2 17416 17466 21 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_CR1 171204 171332 66 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Gypsy 334526 334852 114 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-BovB 505041 505181 68 + . . scaffold885 GLEAN mRNA 501162 507823 1 + . ID=CGI_10025210; scaffold773 WUBlastX LTR_Gypsy 272038 272316 110 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_Harbinger 154638 155117 76 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_R2-Hero 69005 69349 128 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LTR_Ngaro 158523 158723 70 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_Penelope 135132 135485 71 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1 682203 682691 111 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold266 WUBlastX DNA_Maverick 330510 330797 46 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 627435 627707 41 - . . . . . -1 -1 -1 . . . scaffold38310 WUBlastX LINE_RTE-X 17529 17861 60 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-BovB 776315 776497 80 + . . . . . -1 -1 -1 . . . C30526 WUBlastX LINE_RTE-BovB 6496 6678 80 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_RTE-X 426652 426891 78 - . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX LINE_RTE-X 19644 19913 86 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_RTE-X 358935 359408 34 + . . . . . -1 -1 -1 . . . scaffold43134 WUBlastX LINE_RTE-BovB 138303 138962 58 - . . scaffold43134 GLEAN mRNA 126924 141486 0.498925 + . ID=CGI_10008896; scaffold37668 WUBlastX LINE_L1-Tx1 39925 40191 67 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 1008781 1009044 81 - . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L2 19624 19803 28 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 90325 90444 37 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold161 WUBlastX DNA_hAT-Tip100 1002 1562 115 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX DNA_TcMar-ISRm1 348390 348938 113 - . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX DNA_TcMar-ISRm1 91327 91875 114 + . . . . . -1 -1 -1 . . . scaffold40224 WUBlastX LTR_Gypsy 84531 85187 74 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Gypsy 654376 655032 75 + . . . . . -1 -1 -1 . . . scaffold617 WUBlastX LTR_DIRS 62519 62764 72 - . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX DNA_IS4EU 27685 27768 33 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX DNA_IS4EU 28043 28228 78 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy 99668 99769 69 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_Penelope 325090 325746 27 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 424787 424948 43 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 231956 232159 102 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 48200 48541 54 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX DNA_TcMar-Tc1 67261 67590 91 - . . scaffold1651 GLEAN mRNA 64291 72997 0.999027 + . ID=CGI_10007888; scaffold126 WUBlastX LINE_L1-Tx1 237268 237357 35 - . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX LTR_Pao 712 837 110 + . . scaffold36898 GLEAN mRNA 700 1422 0.573259 - . ID=CGI_10002175; scaffold1323 WUBlastX LTR_DIRS 77405 78091 69 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold461 WUBlastX LTR_Ngaro 140861 140989 57 - . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LTR_Gypsy 252161 253078 90 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Gypsy 355254 356144 88 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold1318 WUBlastX LTR_Gypsy 104446 104568 125 - . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LTR_Gypsy 30449 30679 128 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX DNA_Harbinger 296985 297200 24 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX DNA_Harbinger 297202 297306 61 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX DNA_IS4EU 68999 69511 115 + . . . . . -1 -1 -1 . . . scaffold43772 WUBlastX DNA_IS4EU 266435 266617 74 - . . . . . -1 -1 -1 . . . scaffold43772 WUBlastX DNA_IS4EU 266619 266981 53 - . . . . . -1 -1 -1 . . . scaffold43772 WUBlastX DNA_IS4EU 267210 267311 21 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_Jockey 401696 401776 21 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; C29300 WUBlastX LINE_L1-Tx1 1719 2138 87 - . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LINE_RTE-BovB 139578 139772 25 - . . scaffold222 GLEAN mRNA 134195 141016 0.626444 - . ID=CGI_10007124; scaffold1233 WUBlastX LTR_Ngaro 7663 7875 119 - . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold1024 WUBlastX LTR_Ngaro 1087600 1087857 82 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LINE_L1-Tx1 44668 45096 69 - . . . . . -1 -1 -1 . . . scaffold802 WUBlastX LINE_L1-Tx1 141216 141674 81 + . . scaffold802 GLEAN mRNA 137512 196873 0.499283 - . ID=CGI_10015727; scaffold501 WUBlastX DNA_TcMar-Tc1 1288099 1288698 68 + . . . . . -1 -1 -1 . . . C33148 WUBlastX DNA_hAT 10045 10938 68 - . . C33148 GLEAN mRNA 5142 11739 0.999994 - . ID=CGI_10001003; scaffold502 WUBlastX LTR_Gypsy 468344 468796 67 + . . . . . -1 -1 -1 . . . scaffold33934 WUBlastX LTR_Gypsy-Cigr 10262 10879 131 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LTR_Gypsy-Cigr 152061 152579 113 - . . . . . -1 -1 -1 . . . scaffold42264 WUBlastX LTR_Ngaro 130379 130636 119 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_DIRS 549612 550013 123 + . . . . . -1 -1 -1 . . . scaffold35358 WUBlastX RC_Helitron 23617 24174 41 + . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX DNA_Harbinger 107688 108005 50 - . . . . . -1 -1 -1 . . . scaffold38058 WUBlastX LTR_Gypsy 4882 4995 70 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold865 WUBlastX LTR_Ngaro 19112 19495 125 - . . scaffold865 GLEAN mRNA 7384 21120 0.465325 - . ID=CGI_10002639; scaffold1187 WUBlastX LINE_RTE-BovB 43778 44245 120 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 96791 97177 100 + . . scaffold631 GLEAN mRNA 95661 117923 0.999624 - . ID=CGI_10014170; scaffold39014 WUBlastX LINE_L1-Tx1 33912 34157 140 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 376308 376904 149 + . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_CR1 260159 260878 55 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; C30514 WUBlastX DNA_Crypton 1647 2444 60 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Ngaro 3254 3430 68 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 168620 169012 131 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold1500 WUBlastX DNA_Harbinger 142217 142288 22 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_IS4EU 217438 217593 97 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_IS4EU 516317 516547 63 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_IS4EU 517404 517508 58 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L1 374553 374930 24 - . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-BovB 1153 1416 86 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold39126 WUBlastX LINE_L1-Tx1 65208 65465 76 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_PiggyBac 38412 38717 160 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_TcMar-Tc1 21059 21166 20 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_CR1 1706638 1707135 86 + . . . . . -1 -1 -1 . . . scaffold35574 WUBlastX LINE_L1 2767 3003 58 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 741728 742252 134 - . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_CR1 254696 254791 21 - . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 129566 130576 81 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 654779 654970 28 - . . scaffold106 GLEAN mRNA 650785 658770 0.999129 - . ID=CGI_10022052; scaffold1670 WUBlastX LTR_DIRS 456585 456908 152 + . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold1449 WUBlastX DNA_Crypton 27371 27901 93 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX RC_Helitron 239340 239564 104 + . . scaffold59 GLEAN mRNA 230821 243525 0.988711 - . ID=CGI_10011278; scaffold1155 WUBlastX LTR_Gypsy 188907 189020 59 + . . . . . -1 -1 -1 . . . scaffold441 WUBlastX LTR_Ngaro 5141 5836 103 - . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 399 695 64 - . . . . . -1 -1 -1 . . . scaffold37858 WUBlastX LINE_RTE-X 8 427 95 + . . . . . -1 -1 -1 . . . scaffold39158 WUBlastX LTR_Gypsy-Troyk 60851 61291 124 - . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX LINE_L1-Tx1 29379 29555 21 - . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LINE_L1-Tx1 36016 36210 56 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 222557 223474 182 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 225997 226269 148 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold38374 WUBlastX LTR_Gypsy-Cigr 17159 17557 97 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold601 WUBlastX LTR_Gypsy 1143631 1144176 325 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Ngaro 289167 290327 735 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold145 WUBlastX LTR_DIRS 1152507 1154252 908 + . . scaffold145 GLEAN mRNA 1139972 1169601 0.998984 + . ID=CGI_10026576; scaffold58 WUBlastX LTR_Pao 545022 545258 118 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L2 869589 870251 62 - . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_En-Spm 53772 55208 81 - . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX LINE_LOA 302765 302824 20 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_TcMar-Pogo 259508 259648 82 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LINE_Penelope 170763 171167 106 + . . scaffold240 GLEAN mRNA 169762 171676 1 + . ID=CGI_10007851; scaffold1558 WUBlastX LINE_L1 41701 41799 52 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold1773 WUBlastX DNA_Maverick 271937 272221 156 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Maverick 644628 645272 126 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 362931 363050 29 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 363090 363308 113 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_RTE-X 196464 197384 70 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Sola 252371 252487 68 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 4241 4795 39 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 5477 5680 160 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Pao 1022863 1023084 97 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy-Cigr 276912 277355 209 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Pao 159416 159667 24 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L1-Tx1 90505 90639 101 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L1-Tx1 90657 91286 299 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L1-Tx1 91321 91410 20 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L1-Tx1 91391 91963 124 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L1-Tx1 91906 92256 257 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Gypsy 253311 254399 283 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LTR_Ngaro 788851 789570 521 - . . scaffold334 GLEAN mRNA 767755 789598 0.645847 - . ID=CGI_10025962; scaffold334 WUBlastX LTR_Ngaro 789572 790372 520 - . . scaffold334 GLEAN mRNA 767755 789598 0.645847 - . ID=CGI_10025962; scaffold759 WUBlastX LTR_Gypsy 94856 95326 248 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 95319 96017 433 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_CR1 391255 391509 22 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 499412 500203 74 + . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_Crypton 295889 296347 72 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_Jockey 101327 101569 54 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_Jockey 145152 145508 27 - . . scaffold619 GLEAN mRNA 133305 165039 0.859619 - . ID=CGI_10025755; scaffold1565 WUBlastX LINE_L1-Tx1 6999 7469 30 - . . scaffold1565 GLEAN mRNA 460 9199 1 + . ID=CGI_10000778; scaffold186 WUBlastX LINE_RTE-X 211495 211689 103 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_RTE-X 211689 211961 59 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_RTE-X 559713 559967 33 - . . . . . -1 -1 -1 . . . scaffold38580 WUBlastX DNA_TcMar-Marin 55655 56119 173 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LINE_L1-Tx1 54227 54433 99 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 925465 925917 54 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc1 709635 710015 126 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LTR_DIRS 66457 67107 117 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LTR_DIRS 67070 67489 69 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LTR_DIRS 67476 69092 696 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_Gypsy 263446 265113 701 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX RC_Helitron 205752 207668 884 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_RTE-X 271588 271800 66 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy-Cigr 1225738 1226313 361 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L2 671555 672604 463 - . . scaffold6 GLEAN mRNA 669450 677435 1 + . ID=CGI_10022331; scaffold6 WUBlastX LINE_L2 672558 673292 535 - . . scaffold6 GLEAN mRNA 669450 677435 1 + . ID=CGI_10022331; scaffold39096 WUBlastX LTR_Gypsy-Cigr 39561 40754 349 - . . . . . -1 -1 -1 . . . C29618 WUBlastX LINE_CR1-L2 6415 6795 148 + . . . . . -1 -1 -1 . . . scaffold1644 WUBlastX LINE_CR1-L2 50825 51208 187 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Gypsy 441563 441766 140 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Ac 160208 160378 24 + . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX LTR_Gypsy 133879 134970 137 + . . scaffold43358 GLEAN mRNA 123775 136005 0.949704 + . ID=CGI_10009976; scaffold200 WUBlastX DNA_MuDR 63462 63716 81 - . . . . . -1 -1 -1 . . . scaffold200 WUBlastX DNA_MuDR 63712 63990 62 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_MuDR 558208 558486 62 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_MuDR 558482 558736 81 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_MuDR 590020 590142 20 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold1811 WUBlastX LINE_RTE-X 100446 100643 33 - . . . . . -1 -1 -1 . . . scaffold1811 WUBlastX LINE_RTE-X 101136 101351 90 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_PiggyBac 967926 968381 72 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 549553 549948 140 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 230369 230809 135 + . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX LINE_L1-Tx1 100932 101456 58 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 218060 218227 30 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold1301 WUBlastX LINE_L1-Tx1 1446256 1446444 85 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX DNA_Maverick 144498 146246 1152 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1224207 1224344 21 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_L1-Tx1 129421 129951 358 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_CR1 195209 195886 114 + . . . . . -1 -1 -1 . . . scaffold35808 WUBlastX LTR_Gypsy 22407 23411 146 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Ngaro 41925 42806 76 - . . scaffold507 GLEAN mRNA 41380 65568 0.398486 - . ID=CGI_10019084; scaffold37760 WUBlastX LTR_DIRS 20495 20941 188 - . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold39220 WUBlastX LTR_Gypsy 1789 2346 150 - . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX DNA_IS4EU 70187 70639 156 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 1562966 1563109 35 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_MuDR 796383 796631 110 - . . scaffold1301 GLEAN mRNA 795655 798380 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 796383 796631 110 - . . scaffold1301 GLEAN mRNA 781075 819646 0.518044 + . ID=CGI_10027743; scaffold663 WUBlastX LINE_RTE-X 87432 87794 69 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1-Tx1 42414 42608 84 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 51930 53660 1312 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 234003 234341 159 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 235209 236324 930 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_Gypsy-Gmr1 9016 9864 150 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LTR_Ngaro 966317 966928 125 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold1424 WUBlastX DNA_Harbinger 40724 41056 35 - . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LINE_L1-Tx1 134664 135353 87 + . . . . . -1 -1 -1 . . . scaffold40270 WUBlastX LTR_Ngaro 5828 6238 150 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_RTE-BovB 97440 97889 102 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy-Cigr 340921 341589 416 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_Gypsy 98007 98432 80 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX DNA_PiggyBac 43281 43469 22 - . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Ngaro 57876 58031 81 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold43986 WUBlastX LINE_R2-Hero 186344 186433 62 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_R2-Hero 188047 188226 98 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 88257 88613 130 - . . . . . -1 -1 -1 . . . C33592 WUBlastX DNA_Zator 8348 8704 65 - . . . . . -1 -1 -1 . . . scaffold1595 WUBlastX LTR_Gypsy 4848 5843 782 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Pao 65811 65909 34 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold115 WUBlastX LTR_DIRS 359612 359710 27 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 187115 187630 206 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold39974 WUBlastX LTR_Ngaro 69172 69630 149 + . . scaffold39974 GLEAN mRNA 67732 80297 0.969362 + . ID=CGI_10003760; scaffold1016 WUBlastX LINE_L1 101563 101616 34 - . . . . . -1 -1 -1 . . . scaffold1506 WUBlastX LINE_RTE-X 48246 48791 56 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_Maverick 239008 239511 207 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold867 WUBlastX LINE_RTE-X 105449 105703 131 - . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX DNA_TcMar-Tc1 1355 1636 115 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_DIRS 91618 91884 34 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 301452 301628 136 + . . . . . -1 -1 -1 . . . scaffold459 WUBlastX DNA_Merlin 52354 52896 117 - . . scaffold459 GLEAN mRNA 48177 82844 0.45554 + . ID=CGI_10018167; scaffold954 WUBlastX LINE_RTE-BovB 164519 164686 96 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Gypsy 65279 69160 1643 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LINE_L2 43197 43445 94 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_CR1 409820 410170 83 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 92412 92546 104 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Ngaro 424591 424923 62 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Gypsy 208332 208370 24 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Harbinger 269903 270115 35 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX DNA_Harbinger 270241 270378 102 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX DNA_Harbinger 270805 270996 129 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold35926 WUBlastX LINE_RTE-X 1523 1696 67 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_TcMar-Tc1 17916 18137 49 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 393539 393670 31 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold62 WUBlastX LTR_Gypsy 117237 117398 79 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 117400 117501 79 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 117872 118189 57 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX DNA_MuDR 28663 28965 76 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_Rex-Babar 219076 220056 156 + . . scaffold126 GLEAN mRNA 215728 221364 0.491639 + . ID=CGI_10019186; scaffold43538 WUBlastX DNA_Sola 45108 45329 82 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_Sola 45867 46016 93 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_CR1-L2 244313 244726 150 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 204026 204292 36 + . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_RTE-BovB 319210 319920 231 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 40722 41324 190 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 44223 45557 74 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX RC_Helitron 140635 142116 706 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX RC_Helitron 142253 143032 563 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_CR1 591994 592710 193 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_CR1 157681 158349 220 - . . scaffold142 GLEAN mRNA 157089 157685 0.986937 - . ID=CGI_10026755; scaffold457 WUBlastX LTR_Gypsy 233084 233449 31 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Academ 399876 400295 182 + . . scaffold86 GLEAN mRNA 398522 403007 0.217037 + . ID=CGI_10028152; scaffold964 WUBlastX LTR_Ngaro 223368 223991 185 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold40172 WUBlastX LTR_DIRS 58277 58846 222 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 318194 318631 146 + . . . . . -1 -1 -1 . . . C25612 WUBlastX LTR_Gypsy 1674 2579 182 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_Harbinger 71428 71865 256 + . . . . . -1 -1 -1 . . . scaffold1549 WUBlastX LINE_L2 49432 50235 161 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 56937 57341 241 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 793047 793169 32 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Fot1 71881 72153 147 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Fot1 72618 72887 55 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Fot1 73032 73274 81 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1-Tx1 193769 194134 279 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1186 WUBlastX LINE_L1-Tx1 236970 237062 25 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold35138 WUBlastX LTR_Gypsy 11535 14303 1894 - . . . . . -1 -1 -1 . . . scaffold35138 WUBlastX LTR_Gypsy 15871 16413 170 - . . . . . -1 -1 -1 . . . C27058 WUBlastX LTR_DIRS 3729 3857 29 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_IS4EU 424634 425518 219 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_TcMar-Tc1 48585 48773 72 + . . scaffold1318 GLEAN mRNA 47679 59079 0.328272 + . ID=CGI_10008644; scaffold784 WUBlastX LINE_RTE-BovB 303602 303985 493 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 304251 304310 23 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 301210 302145 699 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 302142 303272 544 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 303159 303419 287 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold1834 WUBlastX LINE_L2 461674 461796 74 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy 175500 175706 69 - . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1-Tx1 142547 143272 168 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 126869 127465 148 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 127382 130867 2109 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 677992 679803 1709 + . . . . . -1 -1 -1 . . . C32228 WUBlastX LTR_Copia 6251 6940 57 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy-Cigr 193167 194288 238 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 988094 988651 218 + . . scaffold1532 GLEAN mRNA 980578 997386 0.999875 - . ID=CGI_10028278; scaffold41794 WUBlastX LINE_L1 51755 52117 52 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1 253049 253564 31 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-BovB 898522 898845 151 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold312 WUBlastX DNA_Maverick 39832 39915 27 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LTR_Pao 228258 231098 951 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_CR1-L2 293560 293859 122 - . . . . . -1 -1 -1 . . . C19796 WUBlastX LTR_Gypsy 2 475 316 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_Penelope 570992 572014 163 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold933 WUBlastX LINE_RTE-X 321382 321417 23 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold42890 WUBlastX DNA_Sola 183876 184016 26 - . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold864 WUBlastX DNA_TcMar-Tc1 2563 2823 116 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy-Troyk 53744 53989 58 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy-Troyk 52130 52780 140 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_L1-Tx1 305444 305677 151 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_TcMar-Tc1 550235 550540 115 + . . . . . -1 -1 -1 . . . scaffold35194 WUBlastX DNA_Maverick 14749 15171 326 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 331195 332064 447 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 354166 355179 307 + . . . . . -1 -1 -1 . . . scaffold40154 WUBlastX LTR_Ngaro 27378 27485 21 - . . scaffold40154 GLEAN mRNA 26301 32486 0.434456 - . ID=CGI_10003875; scaffold48 WUBlastX DNA_TcMar-Tc2 725393 725569 43 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L1-Tx1 294014 294955 142 - . . scaffold737 GLEAN mRNA 290958 298439 0.807998 - . ID=CGI_10014317; scaffold43836 WUBlastX LTR_Pao 291604 293097 440 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LTR_Gypsy 16219 16692 216 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 371 1030 262 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX DNA_TcMar-Pogo 1903 2274 181 - . . . . . -1 -1 -1 . . . scaffold814 WUBlastX LINE_CR1 124892 125011 46 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 23550 23741 69 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1017 WUBlastX LTR_Gypsy 628138 628905 230 + . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LINE_RTE-BovB 63049 63354 36 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold1322 WUBlastX LTR_Ngaro 299932 300048 49 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold1191 WUBlastX DNA_NOF 76952 77119 101 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 77314 77529 96 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 77532 77597 51 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 78155 78322 59 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold265 WUBlastX LTR_Ngaro 31888 32388 109 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_RTE-X 99723 101126 169 + . . . . . -1 -1 -1 . . . scaffold1876 WUBlastX LTR_Gypsy 97556 98407 380 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_L2 450449 451306 234 + . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LTR_Gypsy 103275 104144 193 - . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LTR_Gypsy 104129 104347 183 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L1-Tx1 404045 404527 44 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 706960 707100 80 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 707552 708019 50 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_DIRS 98227 98688 247 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX DNA_MuDR 28744 29493 288 - . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX DNA_MuDR 29769 30002 41 - . . . . . -1 -1 -1 . . . scaffold43064 WUBlastX DNA_Harbinger 49589 50557 338 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX DNA_Harbinger 135034 136002 338 + . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold41798 WUBlastX DNA_Kolobok 113506 113772 96 + . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_Kolobok 113856 114029 77 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_L1 463663 465120 22 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; C30072 WUBlastX LINE_RTE-X 6413 7384 267 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_RTE-X 223059 224102 315 - . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 77947 78987 358 + . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX LINE_L2 71545 72390 327 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-BovB 453086 453745 200 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Ngaro 304908 304988 58 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Ngaro 305225 305812 181 - . . . . . -1 -1 -1 . . . scaffold36342 WUBlastX LINE_RTE-BovB 11326 12126 349 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_L1-Tx1 79801 80619 372 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 918816 919115 32 + . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_RTE-X 41692 41964 69 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 472774 473229 268 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 473334 474020 125 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_L1-Tx1 465350 465709 72 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold737 WUBlastX LINE_L2 94886 95731 365 + . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 187122 187268 63 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1 602054 602218 29 + . . . . . -1 -1 -1 . . . scaffold1706 WUBlastX LINE_L1-Tx1 45834 46430 261 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX LINE_L1-Tx1 47066 47497 94 + . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold383 WUBlastX LTR_Ngaro 465498 465773 54 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Ngaro 465770 466000 83 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_PiggyBac 535897 536343 71 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX DNA_TcMar-Tc1 323866 324840 318 + . . scaffold1324 GLEAN mRNA 312434 327926 0.84986 - . ID=CGI_10018395; scaffold541 WUBlastX LINE_RTE-BovB 70824 71066 167 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-BovB 71484 71867 138 - . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX DNA_Harbinger 14641 15120 302 - . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX DNA_Harbinger 15906 16007 48 - . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold588 WUBlastX LINE_Penelope 77384 77659 80 - . . . . . -1 -1 -1 . . . scaffold42112 WUBlastX LTR_Gypsy 64358 65158 195 - . . . . . -1 -1 -1 . . . scaffold474 WUBlastX RC_Helitron 104510 106414 354 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Ngaro 552946 553209 133 - . . . . . -1 -1 -1 . . . scaffold40224 WUBlastX LTR_Gypsy 85583 86755 458 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 568603 569244 105 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold226 WUBlastX LTR_Pao 133612 134076 60 - . . . . . -1 -1 -1 . . . scaffold1881 WUBlastX LINE_Proto2 136399 138828 339 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 1137477 1137575 56 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1138259 1138369 95 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1139296 1139721 32 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold675 WUBlastX DNA_Maverick 28665 29426 258 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_En-Spm 38212 39261 419 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LINE_Penelope 120094 121932 405 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LINE_Penelope 93884 95680 407 + . . . . . -1 -1 -1 . . . scaffold251 WUBlastX LTR_DIRS 38592 39527 403 + . . scaffold251 GLEAN mRNA 16871 39741 0.998838 - . ID=CGI_10005216; scaffold251 WUBlastX LTR_DIRS 38592 39527 403 + . . scaffold251 GLEAN mRNA 27105 44764 0.0632149 + . ID=CGI_10005217; scaffold634 WUBlastX LTR_Pao 7101 7424 288 + . . . . . -1 -1 -1 . . . scaffold36748 WUBlastX LINE_RTE-BovB 15106 15375 45 + . . . . . -1 -1 -1 . . . C31246 WUBlastX LTR_Gypsy-Troyk 2523 2591 36 + . . . . . -1 -1 -1 . . . C31246 WUBlastX LTR_Gypsy-Troyk 2608 2886 239 + . . . . . -1 -1 -1 . . . C31246 WUBlastX LTR_Gypsy-Troyk 2897 3145 112 + . . . . . -1 -1 -1 . . . C31246 WUBlastX LTR_Gypsy-Troyk 3386 3637 153 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_TcMar-Tc1 349770 350009 129 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_RTE-X 200171 201295 333 + . . scaffold1897 GLEAN mRNA 190471 249775 0.317357 - . ID=CGI_10020917; scaffold347 WUBlastX LINE_L1-Tx1 144229 144501 44 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LTR_Ngaro 89982 90509 322 - . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX DNA_hAT 16516 16689 103 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 16516 16689 103 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 15843 16211 283 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 15843 16211 283 + . . scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold43932 WUBlastX LTR_Gypsy 132884 133690 571 - . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 65695 65748 43 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Ngaro 249910 250071 40 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1067 WUBlastX DNA_Sola 102599 102775 107 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 104287 104616 44 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1195 WUBlastX DNA_TcMar-Tc1 196575 197588 437 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Gypsy 1204807 1205088 156 - . . . . . -1 -1 -1 . . . scaffold37002 WUBlastX LINE_CR1 8343 8690 141 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 264944 265534 191 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_L1-Tx1 253629 253994 22 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 62168 64690 361 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 364626 365684 134 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 942596 943099 141 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 944066 944404 22 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX DNA_hAT 292608 292799 104 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 291582 291908 120 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold203 WUBlastX LTR_Ngaro 515922 516632 432 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 516652 516876 105 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 1313293 1313793 350 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 1313802 1313924 58 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_CR1 139456 140613 587 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 160468 160890 189 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 162994 163242 33 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-BovB 13920 14234 226 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; C28108 WUBlastX DNA_TcMar-Pogo 3096 3872 258 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy 185034 185456 299 + . . . . . -1 -1 -1 . . . scaffold33610 WUBlastX LTR_Gypsy 13054 13404 59 - . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_RTE-BovB 589601 590254 199 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_Gypsy 673900 674502 216 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_L1-Tx1 456331 458145 340 + . . . . . -1 -1 -1 . . . scaffold35806 WUBlastX LINE_RTE-BovB 24693 24899 214 + . . . . . -1 -1 -1 . . . scaffold35806 WUBlastX LINE_RTE-BovB 24911 25774 488 + . . . . . -1 -1 -1 . . . scaffold665 WUBlastX LINE_RTE-X 164983 166095 418 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LTR_Ngaro 150327 152192 630 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 121704 122045 246 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 915301 916155 604 - . . scaffold337 GLEAN mRNA 912502 926173 0.999981 - . ID=CGI_10028087; C26318 WUBlastX LINE_RTE-X 5 1540 564 + . . . . . -1 -1 -1 . . . scaffold1261 WUBlastX LINE_L1-Tx1 21790 22218 42 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_Harbinger 177863 178414 412 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_Harbinger 179498 179563 29 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 382903 383124 146 - . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 15799 16038 49 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-X 28365 28517 129 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-X 29458 30165 115 + . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_RTE-BovB 44916 45359 131 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1 136802 136951 40 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Ngaro 411302 411649 211 + . . . . . -1 -1 -1 . . . scaffold39472 WUBlastX LTR_DIRS 37385 37957 54 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 38040 38555 320 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 38525 38902 186 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 38899 39846 118 + . . scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold43396 WUBlastX LTR_Ngaro 235909 236871 394 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold867 WUBlastX LTR_Ngaro 613958 614356 190 - . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 14434 14535 51 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 144633 145454 441 - . . scaffold619 GLEAN mRNA 133305 165039 0.859619 - . ID=CGI_10025755; scaffold759 WUBlastX LTR_Gypsy 96962 97861 418 - . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX LTR_Gypsy 185624 186628 47 + . . . . . -1 -1 -1 . . . scaffold1871 WUBlastX LINE_RTE-X 140779 141900 674 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy-Cigr 76301 76999 545 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy-Cigr 77014 77814 448 - . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LINE_RTE-BovB 63049 63201 71 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold40134 WUBlastX LTR_Gypsy 42459 42632 21 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold1301 WUBlastX DNA_hAT-Tip100 63416 63487 20 - . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX LINE_L2 113302 113505 35 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold962 WUBlastX LINE_L2 1257579 1257848 44 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LINE_CR1 352386 352553 71 - . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_CR1 113343 113693 71 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_CR1 88857 89297 42 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_CR1-L2 699908 700057 33 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L2 1679812 1680189 22 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_CR1 358464 358769 49 - . . . . . -1 -1 -1 . . . scaffold38990 WUBlastX LINE_L2 62591 62677 24 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 263494 264099 20 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LTR_Gypsy 44354 44800 64 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LTR_Gypsy 378165 378323 75 + . . scaffold1262 GLEAN mRNA 371816 387218 0.801532 - . ID=CGI_10018947; scaffold258 WUBlastX LTR_Gypsy 617369 617500 65 + . . . . . -1 -1 -1 . . . scaffold260 WUBlastX LTR_DIRS 80071 80163 39 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_L2 36214 36663 31 - . . scaffold165 GLEAN mRNA 35293 36948 0.531436 - . ID=CGI_10015310; scaffold1484 WUBlastX LINE_L2 289955 290326 40 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX DNA_Crypton 63076 63528 39 + . . scaffold1317 GLEAN mRNA 63271 63657 0.481188 + . ID=CGI_10006055; scaffold485 WUBlastX DNA_Crypton 871974 872273 76 - . . . . . -1 -1 -1 . . . scaffold42804 WUBlastX LINE_R2-Hero 114538 114696 56 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_Harbinger 130754 130849 47 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX DNA_IS4EU 335225 335719 26 - . . scaffold1123 GLEAN mRNA 333329 335551 0.999996 - . ID=CGI_10018737; scaffold39120 WUBlastX DNA_Kolobok-IS4 47978 48259 27 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold594 WUBlastX LTR_Gypsy 73884 74066 38 + . . . . . -1 -1 -1 . . . C33256 WUBlastX LTR_Gypsy 10135 10293 48 - . . . . . -1 -1 -1 . . . C33256 WUBlastX LTR_Gypsy 10293 10364 20 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Harbinger 688242 688520 49 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_CR1 200528 200929 46 - . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold42770 WUBlastX LINE_L1 16943 17152 35 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold1250 WUBlastX LINE_L1 32905 33150 46 + . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LINE_L1 186429 186815 26 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_L1-Tx1 127675 127755 36 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_L1-Tx1 127766 127849 46 + . . . . . -1 -1 -1 . . . scaffold40974 WUBlastX DNA_Kolobok 69797 69976 56 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX DNA_TcMar-Tigge 206733 207044 64 - . . scaffold547 GLEAN mRNA 206215 217037 0.996504 + . ID=CGI_10018847; scaffold305 WUBlastX DNA_MuDR 440183 440494 43 - . . scaffold305 GLEAN mRNA 436325 448362 0.78661 - . ID=CGI_10019140; scaffold1213 WUBlastX DNA_TcMar-Tc1 465441 465527 37 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LINE_Penelope 177272 177526 55 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold461 WUBlastX LINE_RTE-BovB 96436 96813 34 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 727225 727344 41 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_RTE-X 105979 106233 57 - . . . . . -1 -1 -1 . . . scaffold39320 WUBlastX LINE_RTE-X 43003 43137 54 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_RTE-X 223784 224008 42 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-X 97030 97248 36 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 739535 739765 66 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LINE_RTE-X 262322 262528 21 + . . . . . -1 -1 -1 . . . scaffold1723 WUBlastX LINE_RTE-X 18229 18417 61 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 573065 573295 28 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L1 588335 589111 40 + . . scaffold146 GLEAN mRNA 588959 589360 0.999984 + . ID=CGI_10024914; scaffold1834 WUBlastX LINE_L1 42165 42383 61 + . . scaffold1834 GLEAN mRNA 40709 65850 0.846288 + . ID=CGI_10016651; scaffold583 WUBlastX DNA_Sola 309801 310238 48 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_DIRS 36644 36757 66 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_L2 26412 26768 47 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_L1-Tx1 173217 173372 89 + . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy 117447 117797 56 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX DNA_TcMar-Tc2 18586 18933 80 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_TcMar-Tc2 323636 323833 38 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_TcMar-Tc1 359037 359141 22 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_CR1-L2 358831 359031 86 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_CR1-L2 329979 330287 43 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_CR1-L2 842644 842961 49 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Pao 192745 193107 80 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold634 WUBlastX LTR_Gypsy 14255 14755 66 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14255 14755 66 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold1397 WUBlastX DNA_IS4EU 171055 171168 25 + . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX DNA_IS4EU 91707 91898 71 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_IS4EU 658552 658866 51 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold337 WUBlastX LINE_Jockey 1189448 1189549 55 + . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LINE_L2 178085 178570 41 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 46145 46528 54 + . . . . . -1 -1 -1 . . . scaffold42070 WUBlastX DNA_IS4EU 102714 103016 51 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Kolobok-Hyd 1216149 1216373 25 + . . scaffold150 GLEAN mRNA 1213916 1217122 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1216149 1216373 25 + . . scaffold150 GLEAN mRNA 1205286 1224549 1 - . ID=CGI_10028661; scaffold1831 WUBlastX LINE_L1 26579 26896 25 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1857 WUBlastX LINE_L1 60417 60998 50 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_RTE-X 12521 12916 43 + . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_RTE-X 104592 104777 20 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-BovB 176164 176328 43 + . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX DNA_TcMar-Tc1 204793 205068 47 - . . . . . -1 -1 -1 . . . scaffold39778 WUBlastX LINE_RTE-X 62794 63021 69 - . . scaffold39778 GLEAN mRNA 56712 68685 0.806384 - . ID=CGI_10003612; scaffold1725 WUBlastX LTR_Gypsy 48818 49438 71 + . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_L1 30701 30913 81 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_CR1-L2 97366 97470 34 + . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX LINE_CR1-L2 20719 20889 53 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_CR1 87970 88035 27 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 514757 515053 66 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_Harbinger 31236 31544 48 + . . scaffold368 GLEAN mRNA 27692 45024 0.754759 - . ID=CGI_10018691; scaffold150 WUBlastX DNA_hAT-Ac 87369 87581 40 - . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LTR_Gypsy 203941 204690 54 + . . . . . -1 -1 -1 . . . scaffold39960 WUBlastX LTR_Gypsy 50219 50746 74 - . . . . . -1 -1 -1 . . . scaffold35806 WUBlastX LINE_L1 26241 26519 49 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Kolobok-Hyd 1214982 1215266 30 + . . scaffold150 GLEAN mRNA 1213916 1217122 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1214982 1215266 30 + . . scaffold150 GLEAN mRNA 1205286 1224549 1 - . ID=CGI_10028661; scaffold853 WUBlastX DNA_Kolobok-Hyd 206865 207149 30 + . . scaffold853 GLEAN mRNA 204099 212863 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 206865 207149 30 + . . scaffold853 GLEAN mRNA 206619 210945 0.253956 + . ID=CGI_10017495; scaffold525 WUBlastX DNA_IS4EU 60641 60832 56 - . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_TcMar-Tc1 21888 22289 67 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_Penelope 188331 188609 53 - . . . . . -1 -1 -1 . . . scaffold1608 WUBlastX DNA_NOF 73993 74058 24 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_R2 112488 112769 102 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LINE_RTE-X 144214 144591 76 + . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX LINE_CR1 40924 41166 71 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1533 WUBlastX LINE_CR1-L2 95240 95596 20 - . . scaffold1533 GLEAN mRNA 91991 98571 1 + . ID=CGI_10012868; scaffold760 WUBlastX DNA_hAT 812593 813084 80 + . . scaffold760 GLEAN mRNA 811669 818661 0.54434 + . ID=CGI_10024016; scaffold1188 WUBlastX LTR_Copia 170517 170732 20 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1266 WUBlastX LTR_Ngaro 61359 61664 45 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Ngaro 162946 163107 72 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 604632 604847 46 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 321709 321798 21 + . . . . . -1 -1 -1 . . . C34630 WUBlastX DNA_Kolobok 15531 15653 39 + . . . . . -1 -1 -1 . . . C34630 WUBlastX DNA_Kolobok 15801 15995 25 + . . . . . -1 -1 -1 . . . C34630 WUBlastX DNA_Kolobok 16195 16242 23 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-X 1464920 1465000 34 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-X 131061 131171 24 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LINE_RTE-X 206377 206724 58 + . . scaffold1682 GLEAN mRNA 191866 233299 0.316426 - . ID=CGI_10016049; scaffold873 WUBlastX DNA_Maverick 181574 181801 94 - . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX LINE_RTE-BovB 124350 124658 87 - . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX LINE_RTE-X 19963 20037 46 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_RTE-BovB 296802 297104 104 + . . scaffold606 GLEAN mRNA 296790 297152 1 + . ID=CGI_10012954; scaffold38220 WUBlastX LTR_DIRS 175 435 97 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LTR_Copia 42832 42918 21 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_CR1-L2 624397 624489 45 - . . scaffold784 GLEAN mRNA 624445 639860 0.999415 + . ID=CGI_10024437; scaffold1017 WUBlastX LINE_CR1 34410 34490 20 + . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX LINE_CR1 38562 38723 32 - . . scaffold1442 GLEAN mRNA 28034 38698 1 - . ID=CGI_10003584; scaffold1204 WUBlastX LTR_Ngaro 74419 74736 80 + . . . . . -1 -1 -1 . . . scaffold33732 WUBlastX LTR_DIRS 8528 8878 87 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX DNA_TcMar-Tc1 193904 194203 70 - . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LTR_Gypsy 5692 6144 110 - . . . . . -1 -1 -1 . . . C34408 WUBlastX DNA_Harbinger 16534 16602 27 + . . . . . -1 -1 -1 . . . C34408 WUBlastX DNA_Harbinger 17538 17768 27 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX DNA_Kolobok 102718 103299 113 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1 16555 16707 35 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold22 WUBlastX LINE_L1 2264 2521 26 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LINE_L1-Tx1 97137 97340 96 + . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LINE_L1 95800 96246 97 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_L1 404150 404827 83 + . . . . . -1 -1 -1 . . . scaffold41358 WUBlastX DNA_TcMar-Tc1 110732 110905 31 + . . scaffold41358 GLEAN mRNA 104455 115098 0.650923 - . ID=CGI_10004976; scaffold41358 WUBlastX DNA_TcMar-Tc1 112017 112046 20 + . . scaffold41358 GLEAN mRNA 104455 115098 0.650923 - . ID=CGI_10004976; scaffold442 WUBlastX LINE_RTE-BovB 108422 108721 109 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_RTE-BovB 213672 214199 45 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 81327 81593 103 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_RTE-X 339342 339560 90 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1-Tx1 509658 510074 97 - . . scaffold121 GLEAN mRNA 504967 519244 0.995336 - . ID=CGI_10025657; scaffold1267 WUBlastX LINE_L1-Tx1 406273 406452 43 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_CR1-L2 69801 69932 47 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_Penelope 558782 559057 83 - . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold43396 WUBlastX LINE_Penelope 186391 186744 75 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold575 WUBlastX LINE_L1 139593 139790 104 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_L1 128539 129051 80 - . . . . . -1 -1 -1 . . . scaffold1669 WUBlastX DNA_Kolobok 9876 9923 40 + . . scaffold1669 GLEAN mRNA 1110 11588 0.999673 - . ID=CGI_10001412; scaffold1480 WUBlastX DNA_PiggyBac 37096 37284 90 - . . . . . -1 -1 -1 . . . C24566 WUBlastX LINE_Proto2 1118 1648 106 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-BovB 1280693 1281148 97 + . . . . . -1 -1 -1 . . . scaffold724 WUBlastX LINE_RTE-BovB 59390 59662 57 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 169799 169996 77 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_RTE-X 38453 38803 89 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 977150 977449 66 + . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LINE_RTE-BovB 66682 67281 125 + . . . . . -1 -1 -1 . . . scaffold1136 WUBlastX LINE_RTE-X 46774 46827 21 + . . scaffold1136 GLEAN mRNA 45613 63125 0.999895 + . ID=CGI_10003080; scaffold532 WUBlastX LINE_RTE-X 166086 166289 99 + . . scaffold532 GLEAN mRNA 155713 169161 0.907096 - . ID=CGI_10012528; scaffold1738 WUBlastX LINE_CR1-L2 43412 44017 78 + . . . . . -1 -1 -1 . . . scaffold30716 WUBlastX LINE_L2 184 441 25 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_CR1 199513 200232 84 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_CR1 125441 125764 98 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L2 944370 944696 56 + . . . . . -1 -1 -1 . . . C35952 WUBlastX LTR_DIRS 18708 19058 92 + . . . . . -1 -1 -1 . . . scaffold200 WUBlastX LTR_Ngaro 90757 91272 77 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Harbinger 597286 597642 131 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold676 WUBlastX DNA_Harbinger 343613 344362 101 - . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 280462 280788 134 - . . . . . -1 -1 -1 . . . scaffold43494 WUBlastX DNA_TcMar-Tc1 76098 76649 95 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX DNA_TcMar-Marin 38143 38238 46 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 527659 528369 61 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold43726 WUBlastX LINE_RTE-X 160480 160785 90 - . . scaffold43726 GLEAN mRNA 145496 185415 0.997652 - . ID=CGI_10012023; scaffold156 WUBlastX LINE_RTE-X 918712 919074 100 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 942389 943099 91 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_RTE-X 141550 141687 27 + . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX DNA_Maverick 37772 38020 138 + . . . . . -1 -1 -1 . . . scaffold35180 WUBlastX LINE_RTE-X 10423 10476 21 + . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold370 WUBlastX LTR_Copia 609969 610112 36 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LINE_CR1 205173 205307 31 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold501 WUBlastX LINE_L2 267560 268126 87 + . . scaffold501 GLEAN mRNA 267968 268585 0.999995 + . ID=CGI_10027511; C32150 WUBlastX LTR_Gypsy 2523 3383 122 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Harbinger 407302 407604 126 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_IS4EU 600648 601043 106 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L2 620426 620923 29 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LINE_Penelope 170639 170818 58 + . . scaffold240 GLEAN mRNA 169762 171676 1 + . ID=CGI_10007851; scaffold578 WUBlastX LINE_RTE-X 355807 356352 24 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold334 WUBlastX LINE_RTE-BovB 820161 820373 122 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-X 975104 975370 102 + . . scaffold962 GLEAN mRNA 965990 978537 0.921741 - . ID=CGI_10027674; scaffold644 WUBlastX LINE_L1-Tx1 84146 84244 20 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_CR1-L2 332705 333061 73 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 206627 206992 130 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LTR_Ngaro 285553 286002 94 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 286095 286247 39 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold1353 WUBlastX LINE_L2 43991 44428 95 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_IS4EU 246169 246372 96 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_R2-Hero 95750 96331 139 + . . scaffold789 GLEAN mRNA 76148 97050 0.642884 - . ID=CGI_10017181; scaffold594 WUBlastX RC_Helitron 3650 4174 127 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 545450 546202 52 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_Penelope 513415 513837 127 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold32230 WUBlastX DNA_TcMar-Pogo 5 418 147 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX DNA_TcMar-Tc1 180666 181064 83 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 179464 179769 129 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold593 WUBlastX DNA_IS4EU 41174 41278 45 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 324927 325010 53 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 1180656 1181108 90 - . . . . . -1 -1 -1 . . . scaffold39068 WUBlastX LINE_RTE-X 11923 12252 148 + . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 88700 88885 44 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1-Tx1 208564 208827 84 - . . . . . -1 -1 -1 . . . scaffold1621 WUBlastX LINE_CR1-L2 1446 1736 62 + . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Merlin 50161 50250 34 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 50161 50250 34 + . . scaffold39196 GLEAN mRNA 39677 52332 0.583111 + . ID=CGI_10003218; scaffold850 WUBlastX LTR_DIRS 77503 77868 72 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Ngaro 1834876 1835214 82 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Ngaro 1262024 1262542 131 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Harbinger 500710 500784 24 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LINE_L1-Tx1 153698 153910 26 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_TcMar-Marin 423773 424264 64 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_TcMar-Marin 424273 424551 69 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-BovB 796827 797099 77 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-BovB 797279 797488 64 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-BovB 797537 797671 22 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_Gypsy 944084 944134 24 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_TcMar-Tc1 393946 394209 128 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold41884 WUBlastX LINE_L1-Tx1 95398 95826 146 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_CR1-L2 17847 18014 89 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold1792 WUBlastX LTR_Gypsy 331097 331663 316 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold498 WUBlastX LINE_L1 130180 130515 32 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 33234 33656 247 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Ngaro 288746 289171 238 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold1525 WUBlastX LINE_L1-Tx1 40070 40690 389 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L1-Tx1 40692 41075 232 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L1-Tx1 41165 41992 162 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold1872 WUBlastX LINE_RTE-X 66280 67899 837 + . . . . . -1 -1 -1 . . . C30186 WUBlastX LINE_RTE-X 5238 7511 804 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L2 136413 136901 180 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX RC_Helitron 38113 38625 67 - . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX LINE_CR1 58601 59719 111 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_CR1-L2 89372 89554 76 + . . . . . -1 -1 -1 . . . scaffold42364 WUBlastX LINE_Rex-Babar 76010 76390 35 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold597 WUBlastX LINE_CR1 35579 35911 109 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_CR1 37267 37599 109 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold424 WUBlastX LTR_Gypsy 66634 66819 66 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 102735 102926 96 - . . . . . -1 -1 -1 . . . scaffold401 WUBlastX LINE_RTE-X 156382 156531 33 - . . scaffold401 GLEAN mRNA 151217 157765 0.728444 + . ID=CGI_10006994; scaffold969 WUBlastX LTR_Pao 3 1325 1057 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 175237 175908 203 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold980 WUBlastX DNA_Academ 244336 244785 107 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L2 1232470 1233720 592 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L2 1233723 1233869 122 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L2 1233871 1234389 191 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LTR_Gypsy 65793 65885 42 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LTR_Gypsy 65863 66210 157 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LTR_Gypsy 66263 66517 95 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LTR_Gypsy 66544 66648 40 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LTR_Gypsy 66642 67769 831 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX RC_Helitron 5940 6515 115 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX RC_Helitron 6468 7463 243 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_CR1 423205 423516 136 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold926 WUBlastX LINE_CR1 153602 153844 71 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX DNA_hAT-hATw 196534 197127 55 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_I 209083 209229 21 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold35406 WUBlastX DNA_P 17929 18162 54 - . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold42604 WUBlastX DNA_TcMar-Tc1 108268 109131 88 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Pao 793387 793914 454 + . . . . . -1 -1 -1 . . . scaffold1357 WUBlastX LTR_Gypsy 5093 5746 145 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy-Troyk 11319 11441 67 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy-Troyk 11441 12214 442 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy-Troyk 12204 12752 609 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy-Troyk 12754 12933 111 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LTR_Gypsy 92303 94207 347 - . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LTR_Gypsy-Cigr 73361 73792 104 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2-Hydra 616232 616393 23 - . . scaffold113 GLEAN mRNA 609492 622798 0.993341 - . ID=CGI_10021297; scaffold38210 WUBlastX LINE_L2 22291 22977 110 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold502 WUBlastX LINE_L2 148351 148875 143 - . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LTR_Ngaro 144993 145214 32 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Gypsy 170812 171111 112 - . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LINE_R2-Hero 80107 80580 59 + . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LINE_R2-Hero 80959 81366 128 + . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LINE_R2-Hero 81359 81550 28 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_L1 43439 43975 82 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-X 1217018 1217560 82 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 102871 102993 35 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 734269 734706 141 - . . scaffold1360 GLEAN mRNA 732870 739512 0.95405 + . ID=CGI_10022670; scaffold1189 WUBlastX LINE_RTE-X 774029 774160 27 - . . scaffold1189 GLEAN mRNA 763568 774596 0.392072 + . ID=CGI_10023832; scaffold40856 WUBlastX LINE_RTE-X 84076 84711 148 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-X 417780 418217 141 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 335684 336337 66 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 336419 337525 624 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 337527 338720 191 + . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 55596 56231 480 + . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 56250 57260 402 + . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 57233 57955 93 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-X 477196 479403 1041 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 259240 259974 169 - . . . . . -1 -1 -1 . . . C28108 WUBlastX DNA_TcMar-Tc2 3887 4192 63 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 23924 24457 123 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_L1-Tx1 32084 32239 62 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX DNA_TcMar-Tc1 287874 288083 68 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX DNA_TcMar-Tc1 288083 288502 97 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 62431 63477 385 - . . . . . -1 -1 -1 . . . scaffold1654 WUBlastX LINE_RTE-BovB 11501 11929 265 + . . . . . -1 -1 -1 . . . scaffold1654 WUBlastX LINE_RTE-BovB 9342 10592 609 + . . . . . -1 -1 -1 . . . scaffold1654 WUBlastX LINE_RTE-BovB 10625 10897 222 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 268842 268964 57 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX DNA_TcMar-Marin 73726 74361 123 - . . scaffold352 GLEAN mRNA 55040 89183 0.972718 + . ID=CGI_10012244; scaffold1836 WUBlastX LINE_L1 128400 128948 37 + . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1-Tx1 169849 170133 33 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Pao 687637 688089 249 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 49972 50253 242 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX RC_Helitron 1302233 1302490 87 - . . . . . -1 -1 -1 . . . C18324 WUBlastX LTR_Gypsy 149 508 172 + . . . . . -1 -1 -1 . . . C18324 WUBlastX LTR_Gypsy 523 600 64 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_DIRS 90699 91208 156 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LTR_Ngaro 4282 4533 110 + . . . . . -1 -1 -1 . . . scaffold827 WUBlastX LINE_I 49004 49060 21 - . . scaffold827 GLEAN mRNA 49030 49467 0.615967 - . ID=CGI_10007009; scaffold86 WUBlastX DNA_Kolobok 151163 151312 56 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold40 WUBlastX LINE_Penelope 6793 7086 32 + . . . . . -1 -1 -1 . . . scaffold1746 WUBlastX LINE_Penelope 153187 153438 210 - . . . . . -1 -1 -1 . . . scaffold37292 WUBlastX DNA_TcMar-Tc1 34134 34343 103 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 6 224 87 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L1-Tx1 88933 89187 34 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 75848 76672 426 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 78487 78774 150 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_CR1-L2 210774 211346 138 + . . . . . -1 -1 -1 . . . scaffold1661 WUBlastX LINE_L1-Tx1 5487 8351 1249 - . . . . . -1 -1 -1 . . . scaffold569 WUBlastX DNA_Maverick 201152 201205 28 + . . . . . -1 -1 -1 . . . scaffold40406 WUBlastX LINE_L1-Tx1 29148 32804 1086 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LINE_L2 132997 133335 208 + . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX LINE_CR1 131971 132642 170 - . . scaffold43708 GLEAN mRNA 129367 163757 0.948572 + . ID=CGI_10011970; scaffold266 WUBlastX LTR_Gypsy 287060 287212 28 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_DIRS 151662 151952 38 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Ngaro 303783 303968 38 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_IS4EU 120194 120580 174 + . . . . . -1 -1 -1 . . . C33024 WUBlastX LINE_L1-Tx1 1821 2591 146 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1 130489 130998 138 - . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L1-Tx1 456008 456559 170 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy-Cigr 398674 398808 51 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Pao 30927 31037 63 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Gypsy 78545 78679 37 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Pao 664268 664489 24 - . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LINE_L1-Tx1 87207 90410 1108 - . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LINE_L1-Tx1 90407 90778 214 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_RTE-X 468466 469089 162 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 167302 167973 149 + . . scaffold164 GLEAN mRNA 165506 168961 1 - . ID=CGI_10021852; scaffold885 WUBlastX LINE_L1-Tx1 360578 360841 65 - . . . . . -1 -1 -1 . . . scaffold959 WUBlastX LTR_DIRS 1428 3557 1209 + . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LTR_Pao 41714 42400 237 - . . scaffold474 GLEAN mRNA 31807 44448 0.711345 + . ID=CGI_10007591; scaffold470 WUBlastX LTR_Gypsy-Cigr 743 775 25 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_En-Spm 545651 546928 38 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Gypsy 71579 72373 219 + . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LINE_L1-Tx1 39045 39083 42 - . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LINE_L1-Tx1 39167 39388 115 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX DNA_TcMar-Marin 164528 165013 212 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LTR_Ngaro 152197 153039 94 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 144372 145937 825 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LTR_Gypsy-Cigr 151374 153461 1279 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold1179 WUBlastX LTR_Gypsy 22183 22875 202 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold203 WUBlastX LINE_CR1-L2 366493 366624 72 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy 274080 275150 258 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_Crypton 172333 173418 169 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Kolobok-IS4 490081 490890 216 + . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX DNA_Kolobok-IS4 312158 312814 244 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_MuDR 18692 19558 203 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 624315 624770 136 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_RTE-X 37616 38089 143 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold1081 WUBlastX LTR_DIRS 140405 140797 237 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LTR_Pao 100005 100178 120 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 713371 714630 130 + . . scaffold102 GLEAN mRNA 701339 715746 0.984575 + . ID=CGI_10028447; scaffold40134 WUBlastX DNA_Harbinger 29537 29767 83 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold43122 WUBlastX LINE_Penelope 135339 135494 46 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LINE_Penelope 135500 136057 182 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold1631 WUBlastX LINE_L1 14338 14700 213 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L2 1229529 1232717 1742 + . . scaffold601 GLEAN mRNA 1228306 1237789 1 - . ID=CGI_10026862; scaffold939 WUBlastX LTR_Gypsy 73682 74254 455 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 932669 932965 42 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 933266 933445 50 - . . . . . -1 -1 -1 . . . scaffold40614 WUBlastX LINE_RTE-BovB 75828 76481 116 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 172871 173287 79 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy-Cigr 721682 724771 2080 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy-Cigr 728492 731581 2080 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold1352 WUBlastX LTR_Gypsy 155087 156289 192 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LINE_L1-Tx1 108662 112426 1856 + . . . . . -1 -1 -1 . . . scaffold941 WUBlastX LTR_Gypsy 20379 20453 24 + . . . . . -1 -1 -1 . . . scaffold941 WUBlastX LTR_Gypsy 20609 20683 24 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_PiggyBac 535909 536424 31 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA 162466 163332 92 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Pao 302486 302860 220 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_L2 241979 242263 61 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX RC_Helitron 172005 173000 259 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_L1-Tx1 451783 452544 172 + . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Gypsy 309533 309925 235 + . . scaffold1800 GLEAN mRNA 309587 323793 0.999996 + . ID=CGI_10016406; scaffold1800 WUBlastX LTR_Gypsy 310155 312197 1308 + . . scaffold1800 GLEAN mRNA 309587 323793 0.999996 + . ID=CGI_10016406; scaffold11 WUBlastX DNA_Kolobok 908 1192 117 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_Sola 49965 50402 55 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LTR_Ngaro 343087 343791 182 - . . . . . -1 -1 -1 . . . scaffold40420 WUBlastX LTR_Ngaro 89858 90835 198 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LTR_Ngaro 967427 967678 83 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold1362 WUBlastX LTR_Ngaro 545669 545824 122 - . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LINE_L1-Tx1 192893 193501 152 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_TcMar-Fot1 218259 218963 244 - . . . . . -1 -1 -1 . . . scaffold366 WUBlastX LINE_RTE-BovB 170722 171147 294 - . . . . . -1 -1 -1 . . . scaffold38056 WUBlastX LINE_L2 46636 47394 162 - . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_RTE-BovB 171559 171858 290 + . . scaffold1821 GLEAN mRNA 167929 177659 0.681651 - . ID=CGI_10011291; scaffold149 WUBlastX DNA_TcMar-Tc1 71634 72137 294 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L1 1039818 1040597 251 + . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_RTE-X 300221 300523 193 + . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_RTE-X 301319 301453 71 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Maverick 204730 205590 229 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_Penelope 160455 161198 274 + . . scaffold175 GLEAN mRNA 158189 167433 0.999624 + . ID=CGI_10021311; scaffold1885 WUBlastX LINE_RTE-X 287117 287419 64 + . . . . . -1 -1 -1 . . . scaffold37002 WUBlastX LINE_CR1-L2 8397 8756 92 + . . . . . -1 -1 -1 . . . scaffold382 WUBlastX DNA_Academ 23593 24345 52 + . . . . . -1 -1 -1 . . . scaffold382 WUBlastX DNA_Academ 24533 24928 121 + . . . . . -1 -1 -1 . . . scaffold382 WUBlastX DNA_Academ 25598 25660 25 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 324756 325559 174 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1-Tx1 333265 334095 128 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LINE_L1-Tx1 183485 183775 140 - . . scaffold43920 GLEAN mRNA 174629 203515 0.493317 + . ID=CGI_10013994; scaffold43920 WUBlastX LINE_L1-Tx1 183772 184209 173 - . . scaffold43920 GLEAN mRNA 174629 203515 0.493317 + . ID=CGI_10013994; scaffold257 WUBlastX DNA_MuDR 271778 271984 81 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_Penelope 190105 190203 20 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_DIRS 407189 407806 323 - . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LTR_Gypsy 49320 49511 33 + . . . . . -1 -1 -1 . . . scaffold1399 WUBlastX LINE_L1-Tx1 126694 127668 115 - . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LINE_L1-Tx1 194395 194766 93 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold252 WUBlastX LINE_L1-Tx1 196213 196467 43 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold11 WUBlastX LINE_L1 204454 204504 34 - . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LTR_DIRS 40848 41591 99 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 41549 42334 205 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold1228 WUBlastX LTR_DIRS 88702 89235 353 + . . . . . -1 -1 -1 . . . C26606 WUBlastX DNA_Harbinger 1111 1926 345 - . . . . . -1 -1 -1 . . . C32606 WUBlastX DNA_Harbinger 9427 10134 364 - . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX DNA_Kolobok-IS4 28332 29084 335 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1 89483 89647 43 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 230638 230763 73 - . . . . . -1 -1 -1 . . . scaffold1242 WUBlastX LINE_RTE-BovB 2505 2954 115 - . . . . . -1 -1 -1 . . . scaffold1242 WUBlastX LINE_RTE-BovB 2950 3285 35 - . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_L1-Tx1 129251 129643 77 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; C28030 WUBlastX LINE_L1-Tx1 479 730 219 + . . . . . -1 -1 -1 . . . scaffold41660 WUBlastX LINE_L1-Tx1 113735 114370 131 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold117 WUBlastX LINE_CR1 52014 52403 176 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1154 WUBlastX LTR_Ngaro 368833 369360 247 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368833 369360 247 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold1532 WUBlastX LTR_Gypsy 215692 216789 348 + . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LINE_RTE-X 104859 105245 118 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_DIRS 98775 98957 99 + . . . . . -1 -1 -1 . . . C31070 WUBlastX DNA_Maverick 3071 3943 383 - . . . . . -1 -1 -1 . . . C34552 WUBlastX DNA_IS4EU 12874 13455 302 + . . . . . -1 -1 -1 . . . scaffold1467 WUBlastX LINE_R2-Hero 3963 4220 76 - . . . . . -1 -1 -1 . . . scaffold1467 WUBlastX LINE_R2-Hero 4231 4506 170 - . . . . . -1 -1 -1 . . . scaffold1467 WUBlastX LINE_R2-Hero 4791 4868 37 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 257511 257903 40 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 259563 260309 123 - . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX DNA_TcMar-Marin 384343 384621 153 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Ngaro 65279 65797 238 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Ngaro 65773 66123 132 + . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX LINE_CR1 40616 40774 101 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold97 WUBlastX LTR_Gypsy-Cigr 15564 16019 148 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Ngaro 219973 220554 142 + . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LTR_Gypsy 31746 32144 133 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 32165 32374 126 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 32395 32598 150 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold1081 WUBlastX LTR_Gypsy 51400 51831 71 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 280478 280576 24 - . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_CR1 131744 132433 469 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 318872 318934 49 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-BovB 600514 601092 357 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LINE_L2 423332 423931 27 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold1164 WUBlastX DNA_TcMar-Tc1 79533 79868 132 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79889 80086 44 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy-Cigr 72001 72924 419 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 13910 14698 399 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 1303303 1303638 54 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX RC_Helitron 167537 167947 325 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX RC_Helitron 167985 168269 175 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX DNA_Kolobok-IS4 27573 28919 468 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_TcMar-Tc1 222426 223145 409 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Ngaro 511213 511851 427 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 87221 87403 35 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 267925 268437 41 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 644542 645027 74 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 424793 424888 60 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold1200 WUBlastX LINE_L2 102803 103666 419 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Pao 279310 280368 155 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold714 WUBlastX LINE_RTE-X 20889 21008 64 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-X 20987 21388 223 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-X 21391 21726 100 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 673379 674653 546 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 885614 886882 560 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_Gypsy 251973 252386 252 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_Gypsy 252391 252714 274 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_Gypsy 252704 252826 66 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold39096 WUBlastX LTR_Gypsy 40735 41145 38 - . . . . . -1 -1 -1 . . . scaffold38292 WUBlastX LTR_Gypsy 17493 17549 34 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 144548 145195 184 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_CR1 265586 265630 22 + . . scaffold410 GLEAN mRNA 261101 270903 0.399222 + . ID=CGI_10020632; scaffold513 WUBlastX LINE_L2 706757 707041 105 - . . . . . -1 -1 -1 . . . scaffold40512 WUBlastX LTR_Gypsy 8361 9131 555 + . . . . . -1 -1 -1 . . . scaffold40512 WUBlastX LTR_Gypsy 9166 9282 66 + . . . . . -1 -1 -1 . . . scaffold38290 WUBlastX DNA_IS4EU 9654 10673 468 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_TcMar-Tc1 240221 240388 70 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_RTE-X 18911 19204 28 + . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 149342 149551 20 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_CR1-L2 213923 215800 370 - . . scaffold82 GLEAN mRNA 207536 221128 0.649891 + . ID=CGI_10025248; scaffold42422 WUBlastX LINE_RTE-BovB 134924 136132 347 - . . . . . -1 -1 -1 . . . scaffold42422 WUBlastX LINE_RTE-BovB 135952 136755 178 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_IS4EU 37807 38307 149 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_CR1 140624 140788 105 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Maverick 167375 168436 596 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_L1-Tx1 252311 253660 584 - . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 311315 311524 48 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 318681 318890 48 + . . . . . -1 -1 -1 . . . C34010 WUBlastX LTR_Ngaro 14000 14146 69 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1 463758 464045 20 - . . scaffold305 GLEAN mRNA 449845 466663 0.999234 + . ID=CGI_10019141; scaffold39640 WUBlastX LINE_L1-Tx1 58024 59244 218 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_L2 90355 91293 253 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy-Cigr 105544 106572 756 - . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LTR_Gypsy 257106 257495 35 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LTR_Gypsy 165135 165608 341 + . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy 91189 91512 257 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 49210 49656 69 + . . . . . -1 -1 -1 . . . scaffold223 WUBlastX DNA_TcMar-Fot1 152405 153667 708 + . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX DNA_Kolobok 48375 49025 120 + . . scaffold1774 GLEAN mRNA 36391 50061 0.563353 + . ID=CGI_10006376; C30608 WUBlastX LTR_Gypsy 2838 3605 248 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 199859 201151 635 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy-Cigr 109086 109799 558 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy-Cigr 109831 110412 209 + . . . . . -1 -1 -1 . . . scaffold190 WUBlastX DNA_IS4EU 307180 307344 113 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 657852 658178 105 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 961169 961597 278 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 222958 223956 238 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_L1-Tx1 2825 3352 239 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_L1-Tx1 4105 4878 78 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 478257 478757 191 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold1314 WUBlastX LTR_Pao 160406 160966 506 - . . . . . -1 -1 -1 . . . C27146 WUBlastX LTR_Gypsy-Cigr 1659 3059 418 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1 321811 321972 67 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1 322121 322480 282 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1 322483 323589 562 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 100524 100634 30 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Pao 1273533 1274549 540 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_MuDR 1229420 1229671 83 - . . scaffold471 GLEAN mRNA 1226022 1238861 0.423333 - . ID=CGI_10027038; scaffold444 WUBlastX DNA_Merlin 268095 268232 64 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Copia 1217687 1218016 25 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1066 WUBlastX LTR_Copia 169258 169797 71 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold784 WUBlastX LTR_Copia 306410 306478 30 - . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold1783 WUBlastX LINE_CR1 26039 26491 73 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_Gypsy 359336 359557 72 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_En-Spm 300003 300380 21 + . . . . . -1 -1 -1 . . . scaffold43208 WUBlastX LTR_Ngaro 206594 206824 25 + . . . . . -1 -1 -1 . . . scaffold686 WUBlastX LTR_Ngaro 53946 54095 69 + . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX LTR_Ngaro 17119 17376 43 + . . . . . -1 -1 -1 . . . scaffold309 WUBlastX LINE_I 75226 75309 26 + . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX RC_Helitron 27816 28001 68 + . . . . . -1 -1 -1 . . . scaffold34438 WUBlastX RC_Helitron 14886 15461 41 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Harbinger 389458 389610 62 + . . scaffold1698 GLEAN mRNA 386388 395042 0.549917 + . ID=CGI_10019385; scaffold364 WUBlastX DNA_Harbinger 373021 373128 47 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Gypsy 345081 345158 22 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Kolobok-Hyd 72148 72186 24 - . . scaffold1061 GLEAN mRNA 71667 73216 0.999996 - . ID=CGI_10017241; C29788 WUBlastX LINE_L1 5843 6376 64 + . . C29788 GLEAN mRNA 5498 6724 0.72793 + . ID=CGI_10000560; scaffold165 WUBlastX LINE_L1 360659 361192 64 + . . . . . -1 -1 -1 . . . C29736 WUBlastX LINE_L1 3601 3786 28 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 93368 93655 58 - . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX DNA_TcMar-Marin 188508 188561 37 - . . . . . -1 -1 -1 . . . scaffold38480 WUBlastX DNA_TcMar-Marin 40832 40963 32 - . . . . . -1 -1 -1 . . . scaffold38480 WUBlastX DNA_TcMar-Marin 41166 41366 25 - . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LTR_Gypsy 79016 79393 73 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 366854 366943 26 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold1643 WUBlastX DNA_MuDR 36424 36726 65 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_Gypsy 16726 16803 23 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_I-Nimb 33543 34238 52 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_I-Nimb 33543 34238 52 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold43 WUBlastX LINE_Penelope 108125 108508 37 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 275776 275841 22 - . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX LTR_Copia 18051 18137 22 + . . . . . -1 -1 -1 . . . scaffold35726 WUBlastX DNA_TcMar-Marin 23289 23411 60 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX DNA_TcMar-Tc1 51718 52119 23 - . . scaffold1449 GLEAN mRNA 47527 52497 0.806919 - . ID=CGI_10010690; scaffold1403 WUBlastX LINE_L2 374089 374373 58 + . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX LINE_L2 37708 38073 79 + . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LINE_CR1-L2 349596 349658 49 - . . scaffold1849 GLEAN mRNA 345198 370191 0.662499 + . ID=CGI_10015920; scaffold219 WUBlastX LTR_DIRS 123191 123322 28 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LTR_Copia 845958 846026 27 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LTR_Gypsy-Cigr 609198 609353 79 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Pao 232623 232784 26 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_CR1 143119 143367 49 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_hAT-Ac 590418 590606 73 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold1616 WUBlastX LTR_Ngaro 38129 38419 44 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LTR_Ngaro 166458 166682 50 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold377 WUBlastX LTR_Ngaro 586940 587167 49 - . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy 99665 99802 48 - . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LTR_Gypsy 45350 45676 91 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold1588 WUBlastX LINE_I 75595 75903 31 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold39424 WUBlastX DNA_IS4EU 61299 61619 54 - . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX DNA_IS4EU 34774 34962 79 + . . . . . -1 -1 -1 . . . scaffold908 WUBlastX DNA_IS4EU 340356 340451 60 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 85705 85758 25 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_MuDR 307722 308309 44 + . . scaffold43920 GLEAN mRNA 301272 308189 0.985601 + . ID=CGI_10013998; scaffold1532 WUBlastX LTR_Ngaro 1063964 1064023 24 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1064035 1064172 53 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LINE_L1-Tx1 359775 359873 24 + . . . . . -1 -1 -1 . . . scaffold37068 WUBlastX LINE_RTE-X 1295 1597 40 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX LINE_RTE-X 114362 114580 61 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-X 328185 328328 68 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_hAT 23443 23739 80 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_CR1 234837 234974 52 + . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LINE_CR1-L2 9560 9766 60 + . . . . . -1 -1 -1 . . . C36680 WUBlastX LINE_CR1 9303 9650 80 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold32202 WUBlastX LTR_ERV1 183 422 42 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 14982 15257 41 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Ngaro 544342 544560 105 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LTR_Ngaro 181141 181263 33 - . . . . . -1 -1 -1 . . . scaffold1477 WUBlastX DNA_IS4EU 40244 40540 45 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_IS4EU 202396 202974 91 - . . scaffold1020 GLEAN mRNA 186471 206717 0.999666 - . ID=CGI_10012855; scaffold1710 WUBlastX LTR_Gypsy 86473 86589 26 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 235574 235987 65 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L1 762054 762989 45 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_DIRS 113685 114080 93 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L1 1235823 1236032 60 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Kolobok-Hyd 108014 108571 60 - . . scaffold317 GLEAN mRNA 108550 108783 0.998263 - . ID=CGI_10019342; scaffold317 WUBlastX DNA_Kolobok-Hyd 109025 109066 30 - . . . . . -1 -1 -1 . . . scaffold36410 WUBlastX DNA_NOF 22075 22329 39 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_Penelope 240991 241101 42 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold442 WUBlastX LINE_RTE-RTE 108491 108895 56 - . . . . . -1 -1 -1 . . . scaffold1248 WUBlastX LINE_RTE-X 3136 3315 104 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_RTE-X 312972 313184 42 + . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX LINE_RTE-X 3507 3719 40 + . . . . . -1 -1 -1 . . . scaffold1848 WUBlastX LINE_RTE-X 117574 118218 45 - . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX LINE_RTE-X 75476 75826 38 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_TcMar-Tc1 193881 194294 26 + . . scaffold184 GLEAN mRNA 186538 196154 0.912721 - . ID=CGI_10014797; scaffold37148 WUBlastX LINE_L1-Tx1 12533 12868 62 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; C22772 WUBlastX LINE_L1-Tx1 2 169 86 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Marin 475988 476086 40 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LTR_Ngaro 115527 115682 102 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX LINE_L2 144980 145231 78 + . . . . . -1 -1 -1 . . . scaffold36 WUBlastX LTR_ERV1 2159 2527 59 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold186 WUBlastX LTR_Gypsy 8942 9424 45 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LINE_I 44262 44327 39 - . . . . . -1 -1 -1 . . . scaffold31756 WUBlastX LINE_Penelope 9473 9724 60 + . . . . . -1 -1 -1 . . . scaffold38136 WUBlastX LINE_L1 28801 29160 92 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_RTE-X 456089 456229 39 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_RTE-X 456666 456773 20 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Sola 558801 559154 86 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Sola 306844 307083 49 - . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Ngaro 78869 79078 77 + . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Ngaro 79071 79217 23 + . . . . . -1 -1 -1 . . . scaffold38054 WUBlastX DNA_TcMar-Tc1 40876 41130 44 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 16692 16916 43 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold32230 WUBlastX DNA_MuDR 1767 2123 121 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Pao 5276 5761 74 + . . . . . -1 -1 -1 . . . scaffold33026 WUBlastX DNA_hAT-Tip100 4414 5274 63 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LTR_Gypsy 361081 361317 125 + . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX LTR_Gypsy 112888 113073 113 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_IS4EU 788932 789021 29 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX DNA_IS4EU 273528 273971 40 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 472425 472802 23 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Kolobok 285171 285419 104 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold145 WUBlastX LINE_L1 508545 508775 92 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_Penelope 643774 644052 60 - . . scaffold146 GLEAN mRNA 638309 652967 0.499837 - . ID=CGI_10024916; scaffold619 WUBlastX DNA_MuDR 875957 876022 20 - . . scaffold619 GLEAN mRNA 870805 880758 0.920529 - . ID=CGI_10025790; scaffold963 WUBlastX LINE_RTE-X 3626 3778 62 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 266769 267044 29 - . . . . . -1 -1 -1 . . . scaffold565 WUBlastX LINE_RTE-X 54199 54513 52 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX DNA_Sola 189652 190515 31 + . . scaffold61 GLEAN mRNA 189931 192038 1 + . ID=CGI_10016347; scaffold831 WUBlastX LINE_L1 253206 253937 43 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy-Cigr 96467 96649 95 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy-Cigr 96787 97053 42 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 214530 214775 37 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_IS4EU 66578 66685 33 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold41648 WUBlastX DNA_IS4EU 92180 92407 122 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_hAT-Blackja 168400 168705 88 - . . scaffold728 GLEAN mRNA 164455 204088 0.997729 + . ID=CGI_10018231; scaffold41086 WUBlastX LINE_L2 14639 14959 35 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_L1-Tx1 37951 38259 38 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold42770 WUBlastX LINE_CR1 58997 59410 101 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_Kolobok-IS4 107906 108352 83 + . . scaffold99 GLEAN mRNA 106780 117604 0.544851 - . ID=CGI_10021191; scaffold1789 WUBlastX LINE_L2 63037 63150 57 - . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LINE_L1 33601 34164 109 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_L1 270571 271524 51 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LINE_RTE-X 19551 19724 47 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-X 220591 221001 81 - . . . . . -1 -1 -1 . . . C26950 WUBlastX LINE_CR1-L2 2824 3015 24 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_L2 198795 199334 96 + . . scaffold925 GLEAN mRNA 185655 201680 0.878781 - . ID=CGI_10017418; scaffold335 WUBlastX DNA_Crypton 441204 441374 63 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX DNA_Crypton 441802 442092 64 - . . . . . -1 -1 -1 . . . scaffold598 WUBlastX LTR_Ngaro 796 1302 66 + . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX DNA_Kolobok-IS4 219344 219556 31 - . . . . . -1 -1 -1 . . . scaffold42866 WUBlastX DNA_IS4EU 71251 72201 102 - . . scaffold42866 GLEAN mRNA 43150 93731 0.871395 + . ID=CGI_10007991; scaffold1532 WUBlastX LTR_Gypsy 645627 646271 113 - . . . . . -1 -1 -1 . . . scaffold32546 WUBlastX LINE_L1 9383 9940 129 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L1 900263 900526 63 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold211 WUBlastX LINE_RTE-X 986558 986866 82 + . . scaffold211 GLEAN mRNA 978840 989319 0.74015 + . ID=CGI_10026972; scaffold252 WUBlastX LINE_RTE-X 184862 185197 74 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_RTE-X 669886 670230 94 - . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_RTE-X 287066 287464 92 - . . . . . -1 -1 -1 . . . scaffold35568 WUBlastX DNA_PiggyBac 14014 14145 59 - . . . . . -1 -1 -1 . . . scaffold35568 WUBlastX DNA_PiggyBac 15046 15111 23 - . . . . . -1 -1 -1 . . . scaffold503 WUBlastX LINE_RTE-X 16025 16270 101 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX DNA_TcMar-Tc1 242193 242423 102 - . . . . . -1 -1 -1 . . . scaffold296 WUBlastX DNA_TcMar-Tc1 6347 6559 84 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Zator 97818 98165 135 + . . scaffold1024 GLEAN mRNA 87362 100892 0.557329 - . ID=CGI_10028520; scaffold408 WUBlastX LINE_L2 678381 678488 38 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_CR1 265066 265374 70 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 431523 431663 101 - . . . . . -1 -1 -1 . . . scaffold635 WUBlastX LTR_Gypsy 116683 116775 22 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold1825 WUBlastX DNA_hAT-hATw 278056 278484 102 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_Jockey 5 163 35 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LINE_L1-Tx1 52953 53315 92 + . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LINE_L1 28643 29308 45 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Pogo 57251 57643 73 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 107045 107305 32 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_RTE-X 34077 34346 119 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 262409 262504 62 - . . scaffold1018 GLEAN mRNA 242940 268764 0.606365 + . ID=CGI_10019762; scaffold1843 WUBlastX LINE_RTE-X 99388 99489 24 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LINE_RTE-X 629373 629537 71 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold1532 WUBlastX LINE_RTE-X 974994 975323 135 - . . scaffold1532 GLEAN mRNA 970227 975953 0.953998 - . ID=CGI_10028277; scaffold269 WUBlastX LINE_RTE-X 313888 314340 71 + . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX DNA_TcMar-Tc1 218677 218757 30 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_TcMar-Tc1 470205 470342 34 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_TcMar-Tc1 316537 316986 76 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Pao 2683 2799 50 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_CR1-L2 559633 559821 157 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX DNA_Crypton 854962 855453 94 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 94652 95539 119 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1 198550 198750 53 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1-Tx1 209594 209788 34 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold9 WUBlastX LINE_Penelope 3362 4318 454 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1-Tx1 84179 84544 131 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1-Tx1 84685 85458 160 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1-Tx1 85448 86161 502 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1-Tx1 86164 86322 71 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 157535 157621 35 + . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX RC_Helitron 4151 4417 37 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold301 WUBlastX LINE_RTE-X 395780 396844 632 - . . scaffold301 GLEAN mRNA 385076 401217 0.811406 + . ID=CGI_10026720; scaffold31 WUBlastX LINE_L2 64306 64692 143 + . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX LTR_Ngaro 113063 113605 101 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Ngaro 7703 8494 40 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Ngaro 8496 8546 22 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_hAT-Blackja 259362 259466 28 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_hAT-Blackja 259939 260010 44 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_hAT-Blackja 260334 260414 27 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_IS4EU 204843 205385 151 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX DNA_IS4EU 10803 11345 153 + . . scaffold1004 GLEAN mRNA 10032 23372 0.57306 + . ID=CGI_10020759; scaffold1004 WUBlastX DNA_IS4EU 10803 11345 153 + . . scaffold1004 GLEAN mRNA 10170 36067 1 - . ID=CGI_10020760; scaffold1599 WUBlastX DNA_Kolobok-IS4 853435 853725 176 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LTR_Gypsy 164494 165471 110 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_Penelope 2 169 66 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_Penelope 144 356 74 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_PiggyBac 381357 381581 111 - . . . . . -1 -1 -1 . . . scaffold1264 WUBlastX LINE_L1-Tx1 37129 37626 42 + . . scaffold1264 GLEAN mRNA 25666 41185 0.612594 + . ID=CGI_10007170; scaffold1599 WUBlastX LINE_CR1-L2 435819 437540 958 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1142445 1142816 263 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1143631 1144056 346 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LINE_L1-Tx1 50053 51417 81 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_CR1-L2 448278 448526 107 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_L2 274507 274830 68 + . . scaffold156 GLEAN mRNA 272710 277708 0.558302 - . ID=CGI_10026489; scaffold156 WUBlastX LINE_L2 275181 275453 37 + . . scaffold156 GLEAN mRNA 272710 277708 0.558302 - . ID=CGI_10026489; scaffold42264 WUBlastX LTR_Ngaro 131316 131522 93 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_PiggyBac 113723 113941 65 + . . . . . -1 -1 -1 . . . scaffold43184 WUBlastX LINE_RTE-X 196092 196394 101 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 97520 98197 55 + . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LINE_RTE-BovB 65543 65824 134 + . . . . . -1 -1 -1 . . . C28272 WUBlastX DNA_Sola 1527 1694 132 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 470602 470874 65 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1-Tx1 471253 471414 54 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1696 WUBlastX LTR_Pao 2760 3203 270 + . . scaffold1696 GLEAN mRNA 261 23562 0.414457 - . ID=CGI_10003674; scaffold1554 WUBlastX LTR_Gypsy 4700 6520 1113 - . . scaffold1554 GLEAN mRNA 977 22779 0.529783 + . ID=CGI_10017354; scaffold145 WUBlastX LINE_L1-Tx1 508162 508566 153 - . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LINE_Penelope 6695 6775 48 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L1-Tx1 28087 28575 111 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 569563 569646 33 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 11311 11985 620 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1-Tx1 74373 74756 250 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 74762 75472 340 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 75777 76385 320 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 77315 77977 282 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold86 WUBlastX LINE_CR1 574690 574938 143 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1 129020 129463 100 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_L2 46551 47006 27 - . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LINE_R2-Hero 73481 73792 210 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1 247982 248740 41 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold1327 WUBlastX LTR_Gypsy 216658 216738 21 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_RTE-X 175231 175749 146 - . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LINE_RTE-X 36587 37105 144 - . . . . . -1 -1 -1 . . . scaffold139 WUBlastX LTR_Ngaro 56901 57482 136 - . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LTR_Ngaro 4286 4861 142 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_DIRS 803384 803749 114 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_DIRS 803889 804008 39 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_TcMar-Tc1 633081 633446 133 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; scaffold1301 WUBlastX DNA_TcMar-Tc1 842 1123 173 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX DNA_hAT-Tip100 467864 468577 139 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_L1-Tx1 214911 215021 38 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_L1-Tx1 218313 218696 37 + . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_L1 459618 459956 174 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_L1-Tx1 97229 97372 49 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1860 WUBlastX LINE_L1-Tx1 97420 97605 54 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold465 WUBlastX LINE_Penelope 83433 83930 137 - . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LINE_L2 193591 193710 23 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy-Cigr 600907 601977 677 + . . . . . -1 -1 -1 . . . C34174 WUBlastX LINE_CR1 15260 15499 59 - . . . . . -1 -1 -1 . . . C32606 WUBlastX LTR_Gypsy-Cigr 5389 6063 183 + . . . . . -1 -1 -1 . . . scaffold1357 WUBlastX LTR_Gypsy-Cigr 4059 4700 172 + . . . . . -1 -1 -1 . . . scaffold148 WUBlastX LTR_Gypsy 18482 18805 191 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L2 22271 22798 152 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold481 WUBlastX LINE_L2 1208958 1209881 88 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold833 WUBlastX DNA_hAT-hATw 8234 8599 108 - . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_I-Nimb 33225 33545 33 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_RTE-X 404274 404816 125 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 576220 576435 38 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold621 WUBlastX LINE_RTE-X 72300 72998 115 - . . scaffold621 GLEAN mRNA 65448 89925 0.549323 - . ID=CGI_10017670; scaffold143 WUBlastX LINE_L1-Tx1 186818 187315 90 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1581 WUBlastX LINE_L2 14213 14548 24 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LTR_DIRS 520418 521437 153 - . . . . . -1 -1 -1 . . . scaffold959 WUBlastX LTR_DIRS 469 1488 153 + . . . . . -1 -1 -1 . . . scaffold1798 WUBlastX DNA_IS4EU 19 486 204 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_RTE-X 149265 149822 148 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-BovB 44915 45256 49 - . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX LTR_DIRS 8260 10587 1253 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 320025 320198 36 - . . . . . -1 -1 -1 . . . C25328 WUBlastX LINE_L2 798 1007 69 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 115345 115440 22 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 76665 76898 36 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy-Cigr 690716 691078 104 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy-Cigr 694571 694750 28 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy-Cigr 46805 48445 778 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Pao 32244 32984 684 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Pao 32981 33523 426 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L2 554012 554962 104 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy 641544 642140 125 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_Penelope 179311 179871 35 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_L1 76193 76339 79 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_RTE-X 166911 167222 168 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 330242 330634 20 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_L1-Tx1 465889 467277 592 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_L1-Tx1 467279 467689 412 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_L1-Tx1 467906 468598 350 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold40088 WUBlastX DNA_Harbinger 10136 10315 65 + . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX DNA_Harbinger 11032 11322 71 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_Merlin 336716 336934 57 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_Merlin 337152 337529 187 + . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Maverick 10389 10946 180 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy-Cigr 1100653 1103382 1878 - . . scaffold156 GLEAN mRNA 1094153 1105194 0.982183 - . ID=CGI_10026543; scaffold609 WUBlastX LINE_L1-Tx1 63988 67776 1624 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_CR1-L2 736088 737068 109 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold1100 WUBlastX LTR_Gypsy 98683 98820 39 - . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy 99200 99601 117 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT-Tip100 5035 7038 198 - . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX RC_Helitron 593 682 31 + . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX RC_Helitron 1154 1297 52 + . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX RC_Helitron 1703 1987 87 + . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_TcMar-Fot1 89333 89491 57 - . . . . . -1 -1 -1 . . . scaffold38848 WUBlastX DNA_TcMar-Tc1 53972 54079 42 - . . . . . -1 -1 -1 . . . scaffold1784 WUBlastX LTR_DIRS? 57694 57921 118 - . . . . . -1 -1 -1 . . . C14464 WUBlastX DNA_En-Spm 5 253 272 - . . . . . -1 -1 -1 . . . scaffold532 WUBlastX LINE_RTE-X 27271 28206 120 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_RTE-X 582210 583334 155 - . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1-Tx1 169759 170103 23 - . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LTR_DIRS 102663 103361 137 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_CR1-L2 1441123 1441353 36 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 441891 442088 125 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold714 WUBlastX DNA_TcMar-Tc1 88385 88765 78 - . . scaffold714 GLEAN mRNA 72326 94511 0.727136 + . ID=CGI_10016640; scaffold386 WUBlastX LINE_L1 17490 18143 103 - . . . . . -1 -1 -1 . . . scaffold858 WUBlastX LINE_RTE-X 6877 7944 89 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_En-Spm 255023 255214 35 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_En-Spm 255318 255683 180 + . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX LTR_Gypsy 352106 352798 276 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 209896 210576 289 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LTR_Gypsy 280988 281248 80 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold43702 WUBlastX LINE_RTE-X 80217 80966 168 - . . scaffold43702 GLEAN mRNA 66519 92177 0.245591 - . ID=CGI_10011903; scaffold38552 WUBlastX LINE_RTE-X 4763 5575 36 + . . . . . -1 -1 -1 . . . C28510 WUBlastX DNA_Sola 1597 2199 182 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_L1-Tx1 362383 364029 918 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_L1-Tx1 363992 366160 958 + . . . . . -1 -1 -1 . . . C29576 WUBlastX LTR_DIRS 394 834 44 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Harbinger 1426968 1427483 113 + . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX DNA_IS4EU 326681 327247 219 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1 102319 102399 41 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Sola 785213 785707 188 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-X 319359 320393 182 - . . scaffold237 GLEAN mRNA 315225 321061 0.999786 + . ID=CGI_10021581; scaffold1131 WUBlastX LINE_L1-Tx1 350161 350508 49 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 15282 16280 625 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_CR1 91227 92321 199 - . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_CR1-L2 82564 82719 68 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1315 WUBlastX LINE_CR1-L2 229538 230167 258 + . . . . . -1 -1 -1 . . . scaffold1595 WUBlastX LINE_CR1-L2 11779 12291 285 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_L1 183468 183953 155 - . . . . . -1 -1 -1 . . . scaffold36848 WUBlastX DNA_PiggyBac 33279 33746 247 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Ngaro 797610 798503 202 - . . scaffold502 GLEAN mRNA 778874 801211 0.91725 + . ID=CGI_10024346; scaffold1299 WUBlastX LINE_RTE-BovB 139995 140450 296 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold223 WUBlastX DNA_Harbinger 283616 284278 260 + . . scaffold223 GLEAN mRNA 275585 285591 0.814847 - . ID=CGI_10012923; scaffold321 WUBlastX LINE_RTE-X 202943 203272 135 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 203274 203534 84 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 202538 202621 45 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX DNA_TcMar-Tc1 572796 573635 283 - . . . . . -1 -1 -1 . . . scaffold42112 WUBlastX LTR_Gypsy 64218 64490 114 - . . . . . -1 -1 -1 . . . scaffold42112 WUBlastX LTR_Gypsy 67600 67713 69 - . . . . . -1 -1 -1 . . . scaffold42112 WUBlastX LTR_Gypsy 67725 67949 156 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LINE_CR1-L2 153671 153832 80 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 179448 179918 279 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_RTE-X 653217 653594 151 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-BovB 251911 252153 141 + . . scaffold419 GLEAN mRNA 243081 266501 0.999183 - . ID=CGI_10028337; scaffold43804 WUBlastX DNA_hAT-Tip100 268964 269092 20 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L1-Tx1 269955 270050 23 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Ngaro 301408 301857 224 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LTR_Ngaro 151806 152477 254 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 64021 64149 29 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold1891 WUBlastX DNA_TcMar-Tc1 196031 196342 200 + . . . . . -1 -1 -1 . . . scaffold39088 WUBlastX DNA_TcMar-Tc1 40219 40566 96 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold79 WUBlastX DNA_TcMar-Tc1 873314 873559 25 - . . scaffold79 GLEAN mRNA 869143 880340 0.999287 - . ID=CGI_10024652; scaffold88 WUBlastX DNA_TcMar-Tc1 19238 19369 37 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold1020 WUBlastX LTR_Gypsy 328008 328724 459 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 328727 330958 1953 - . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy 208111 209526 979 - . . scaffold723 GLEAN mRNA 194118 214562 0.999791 - . ID=CGI_10015263; scaffold723 WUBlastX LTR_Gypsy 209616 209957 292 - . . scaffold723 GLEAN mRNA 194118 214562 0.999791 - . ID=CGI_10015263; scaffold718 WUBlastX LINE_CR1-L2 19158 19256 27 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 161338 161922 98 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_TcMar-Fot1 66980 67237 124 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_TcMar-Fot1 67234 67623 129 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Ngaro 711466 711738 59 + . . . . . -1 -1 -1 . . . scaffold129 WUBlastX LINE_L1-Tx1 47189 47293 36 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX DNA_P 181216 182259 143 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX DNA_P 182477 183133 128 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_L2 91094 91849 313 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold919 WUBlastX LTR_Gypsy 18365 19687 326 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_Penelope 555428 555877 155 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 359192 359614 146 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1-Tx1 296959 297255 30 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Gypsy 305022 305639 87 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LTR_Gypsy 305886 306542 171 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1045 WUBlastX RC_Helitron 93025 93750 239 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_PiggyBac 152681 153541 363 - . . . . . -1 -1 -1 . . . scaffold287 WUBlastX LTR_Ngaro 69285 69866 365 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_TcMar-Tc1 526851 527270 224 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_TcMar-Tc1 527360 527410 20 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 557243 558244 303 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold760 WUBlastX LTR_Gypsy-Cigr 28766 29356 321 + . . . . . -1 -1 -1 . . . scaffold1133 WUBlastX DNA_IS4EU 36872 37195 183 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LTR_Gypsy 33073 33516 92 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold292 WUBlastX DNA_TcMar-Marin 37940 38083 63 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold1464 WUBlastX LTR_Gypsy 2423 2977 235 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold149 WUBlastX LINE_L1-Tx1 436386 437165 343 - . . . . . -1 -1 -1 . . . scaffold739 WUBlastX LTR_Pao 39262 39720 240 - . . . . . -1 -1 -1 . . . scaffold37430 WUBlastX LTR_Pao 38048 38206 79 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold43 WUBlastX LTR_Gypsy 89770 90561 209 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 955534 955764 37 + . . . . . -1 -1 -1 . . . scaffold1428 WUBlastX DNA_Sola 12757 12984 48 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_TcMar-Tc1 293114 293455 163 - . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LTR_Pao 187349 187441 22 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_CR1-L2 144661 144798 39 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_DIRS 151191 152090 389 - . . scaffold621 GLEAN mRNA 127381 238205 0.796035 + . ID=CGI_10017672; scaffold40808 WUBlastX LTR_DIRS 81413 82312 389 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_DIRS 201733 202632 389 - . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 49564 50271 431 - . . . . . -1 -1 -1 . . . C25832 WUBlastX RC_Helitron 3 1037 462 + . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 120642 121496 277 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Maverick 205955 206527 434 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_Maverick 757569 758177 406 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold1350 WUBlastX LINE_RTE-X 398590 398688 26 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold42704 WUBlastX DNA_TcMar-Tc1 86837 87154 75 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_L1-Tx1 178046 178381 171 + . . scaffold507 GLEAN mRNA 176329 186367 0.999675 - . ID=CGI_10019089; scaffold507 WUBlastX LINE_L1-Tx1 178392 178607 88 + . . scaffold507 GLEAN mRNA 176329 186367 0.999675 - . ID=CGI_10019089; scaffold507 WUBlastX LINE_L1-Tx1 178604 179119 149 + . . scaffold507 GLEAN mRNA 176329 186367 0.999675 - . ID=CGI_10019089; C29558 WUBlastX LTR_Gypsy 5124 5216 23 - . . . . . -1 -1 -1 . . . scaffold1103 WUBlastX LINE_L2 11747 11803 21 + . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold257 WUBlastX LTR_DIRS 1605445 1605858 179 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold43366 WUBlastX LTR_DIRS 82842 83645 315 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 202744 203118 142 - . . . . . -1 -1 -1 . . . scaffold1357 WUBlastX DNA_Maverick 79560 80312 384 - . . scaffold1357 GLEAN mRNA 78358 86116 0.978973 - . ID=CGI_10004038; scaffold34000 WUBlastX LINE_L2 7190 7921 310 - . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_CR1-L2 76656 77159 181 + . . scaffold1222 GLEAN mRNA 68719 82791 0.648135 - . ID=CGI_10016236; scaffold425 WUBlastX LTR_Gypsy 67377 68216 493 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX DNA_IS4EU 51245 51808 348 - . . scaffold39640 GLEAN mRNA 51087 54120 0.557203 - . ID=CGI_10003501; C31156 WUBlastX DNA_hAT-Ac 1684 1908 80 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 207594 207983 280 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 1621727 1623187 267 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_TcMar-Tc1 14317 14691 165 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_TcMar-Tc1 14703 15029 194 - . . . . . -1 -1 -1 . . . scaffold37424 WUBlastX DNA_Harbinger 11455 11574 35 + . . . . . -1 -1 -1 . . . scaffold39334 WUBlastX DNA_TcMar-Tc1 20167 20301 61 - . . . . . -1 -1 -1 . . . scaffold39334 WUBlastX DNA_TcMar-Tc1 20301 20861 272 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1-Tx1 210763 211095 176 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1-Tx1 211034 211606 158 - . . . . . -1 -1 -1 . . . C26168 WUBlastX LINE_L1 102 1124 435 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-X 25595 25741 70 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold939 WUBlastX DNA_TcMar-Tc1 148696 149724 452 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L2 384324 385022 242 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Ngaro 468325 468417 43 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold40614 WUBlastX LINE_L2 62290 62694 141 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold36806 WUBlastX LINE_L1-Tx1 12146 12907 111 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 41909 42445 128 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_RTE-X 406671 406928 53 + . . . . . -1 -1 -1 . . . scaffold1354 WUBlastX LINE_RTE-X 168257 169453 457 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_CR1 746077 747150 319 - . . scaffold583 GLEAN mRNA 741499 750992 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 746077 747150 319 - . . scaffold583 GLEAN mRNA 742000 755299 0.5 + . ID=CGI_10023644; scaffold43956 WUBlastX LTR_Pao 131214 131423 97 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 222388 222915 183 + . . scaffold1665 GLEAN mRNA 220836 229215 0.994598 - . ID=CGI_10015206; scaffold1009 WUBlastX DNA_IS4EU 431572 431709 45 + . . scaffold1009 GLEAN mRNA 430368 431934 1 + . ID=CGI_10028733; scaffold1132 WUBlastX DNA_hAT-Tip100 761096 761719 249 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LINE_Penelope 27940 28752 162 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-BovB 10699 11427 217 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 132971 133231 51 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_L1-Tx1 358707 360314 163 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold1101 WUBlastX LINE_L2 338257 338913 136 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Ngaro 170669 170920 147 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_R2-Hero 323085 323231 33 - . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1 324065 324211 41 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_DIRS 281127 281384 158 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_Harbinger 97875 98753 595 + . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold1054 WUBlastX LTR_Gypsy 111274 111402 26 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Sola 949360 949644 186 + . . . . . -1 -1 -1 . . . C34122 WUBlastX LTR_Gypsy 13549 13863 95 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy 566015 566182 30 - . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy 112994 113215 46 - . . . . . -1 -1 -1 . . . scaffold42568 WUBlastX LINE_RTE-BovB 9087 9548 101 - . . . . . -1 -1 -1 . . . scaffold42568 WUBlastX LINE_RTE-BovB 11597 11962 223 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 600193 601173 391 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX DNA_Academ 551706 552011 226 - . . scaffold1794 GLEAN mRNA 551697 552194 0.854769 - . ID=CGI_10019596; scaffold1794 WUBlastX DNA_Academ 552232 552786 300 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX DNA_Academ 552840 553094 150 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX DNA_Academ 553078 553200 37 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 37556 37921 190 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Maverick 353093 353374 44 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 263971 264066 28 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 266500 266592 57 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 266574 266780 194 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_TcMar-Tc2 237116 237697 299 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Maverick 164391 164540 69 - . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 12129 12518 39 - . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 13552 13773 86 - . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 15993 16541 65 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 1108412 1108960 414 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 1109900 1109983 28 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 1110344 1110490 81 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 173475 174059 298 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold38116 WUBlastX LTR_Gypsy 15357 15539 79 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LTR_Gypsy 28408 28704 21 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1 94025 96280 491 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Gypsy 369773 369907 68 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 72278 72484 60 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 72426 73259 425 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_Gypsy 96049 97509 781 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 32118 32231 51 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 240766 241038 124 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 241684 242307 237 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 242298 242672 86 - . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX LTR_Pao 285 521 27 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_RTE-X 112083 114446 585 + . . scaffold53 GLEAN mRNA 69197 125241 0.981118 + . ID=CGI_10026649; scaffold406 WUBlastX DNA_TcMar-IS630 662323 662709 67 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Pao 483654 484151 25 + . . scaffold248 GLEAN mRNA 483285 484196 0.965913 + . ID=CGI_10017238; C30058 WUBlastX LINE_L2 1567 1830 58 + . . C30058 GLEAN mRNA 650 4812 0.700712 - . ID=CGI_10000592; scaffold1499 WUBlastX LTR_Copia 6954 7307 60 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 105881 106384 36 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_CR1-L2 60770 60961 28 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_CR1-L2 61059 61142 20 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L2 328695 328949 43 - . . . . . -1 -1 -1 . . . scaffold35230 WUBlastX LTR_Ngaro 20467 20688 65 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L2 133289 133357 25 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_DIRS 360524 360820 66 - . . scaffold621 GLEAN mRNA 360060 382748 0.996965 - . ID=CGI_10017688; scaffold1623 WUBlastX LTR_Gypsy 56449 56682 44 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy 190158 190337 80 + . . . . . -1 -1 -1 . . . scaffold1105 WUBlastX LTR_Gypsy 1508 1816 27 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 598169 598519 53 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 1037477 1037839 69 + . . . . . -1 -1 -1 . . . scaffold1533 WUBlastX DNA_Harbinger 94238 94450 76 + . . scaffold1533 GLEAN mRNA 91991 98571 1 + . ID=CGI_10012868; scaffold33832 WUBlastX DNA_IS4EU 49 174 37 - . . . . . -1 -1 -1 . . . scaffold40068 WUBlastX LINE_R2-Hero 69403 69474 20 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_L1 2982 3092 28 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_L1 151725 151877 64 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold1629 WUBlastX LINE_L1 32848 33042 35 + . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LINE_L1 331469 331705 81 + . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX DNA_TcMar-Marin 104433 104660 53 - . . scaffold1245 GLEAN mRNA 102403 119670 0.989696 - . ID=CGI_10009226; scaffold484 WUBlastX DNA_TcMar-Marin 237 602 75 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_CR1 143116 143457 47 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LINE_Penelope 28854 29147 46 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_MuDR 65996 66241 47 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_RTE-X 481792 482085 28 + . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 216135 216251 49 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold1599 WUBlastX LINE_RTE-X 543062 543208 34 + . . scaffold1599 GLEAN mRNA 541949 554448 0.648153 + . ID=CGI_10027151; scaffold43920 WUBlastX LINE_RTE-X 357959 358171 70 - . . scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold43964 WUBlastX LINE_RTE-X 134806 134952 74 - . . scaffold43964 GLEAN mRNA 134421 152513 0.996559 - . ID=CGI_10014643; scaffold1892 WUBlastX LINE_RTE-X 9038 9211 27 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_RTE-X 244734 244856 38 + . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LINE_RTE-RTE 106920 107138 91 + . . scaffold585 GLEAN mRNA 91313 107443 0.999351 - . ID=CGI_10005541; scaffold801 WUBlastX LINE_RTE-X 37860 38321 65 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_RTE-X 932348 932578 49 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_RTE-X 42423 42605 63 - . . . . . -1 -1 -1 . . . scaffold42302 WUBlastX DNA_PiggyBac 42078 42248 36 - . . scaffold42302 GLEAN mRNA 42006 46479 0.986322 - . ID=CGI_10006568; scaffold1009 WUBlastX LINE_Proto2 1313588 1313671 40 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_Proto2 1313686 1313829 23 + . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_RTE-X 208383 208619 42 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 559133 559369 42 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-X 1100299 1100547 23 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 43328 43465 32 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L1-Tx1 2308 2529 34 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Marin 594220 594663 56 - . . . . . -1 -1 -1 . . . scaffold34732 WUBlastX LINE_L1-Tx1 16367 16708 31 + . . scaffold34732 GLEAN mRNA 11726 18752 1 - . ID=CGI_10001335; scaffold1159 WUBlastX LTR_ERV1 79955 80080 43 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L2 186288 186656 62 + . . . . . -1 -1 -1 . . . scaffold33412 WUBlastX LINE_Jockey 6804 6944 58 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 38450 38830 72 + . . . . . -1 -1 -1 . . . scaffold592 WUBlastX LTR_Gypsy 248056 248475 36 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Ngaro 62444 62680 53 + . . scaffold1232 GLEAN mRNA 53895 66601 0.999898 - . ID=CGI_10014987; scaffold156 WUBlastX LTR_Ngaro 99775 99993 72 + . . . . . -1 -1 -1 . . . C26518 WUBlastX DNA_Harbinger 3316 3564 77 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 567324 567674 76 - . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX LINE_Penelope 14926 15102 63 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_P 200735 200902 23 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX DNA_P 47856 48023 23 - . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX DNA_P 175933 176172 38 + . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold1039 WUBlastX LINE_L2 9996 10148 62 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_L1-Tx1 70282 70683 50 - . . . . . -1 -1 -1 . . . scaffold35466 WUBlastX LINE_L1-Tx1 14485 14640 34 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1 166448 167176 57 - . . . . . -1 -1 -1 . . . scaffold40454 WUBlastX LINE_RTE-BovB 83168 83617 33 + . . scaffold40454 GLEAN mRNA 83347 90444 1 - . ID=CGI_10004122; scaffold348 WUBlastX LINE_RTE-BovB 416538 416702 69 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_RTE-X 329698 330039 37 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX DNA_Sola 127185 127313 26 - . . scaffold1098 GLEAN mRNA 127164 127730 0.999983 - . ID=CGI_10010797; scaffold1098 WUBlastX DNA_Sola 127368 127688 53 - . . scaffold1098 GLEAN mRNA 127164 127730 0.999983 - . ID=CGI_10010797; scaffold1021 WUBlastX LINE_L1-Tx1 592739 592807 55 - . . . . . -1 -1 -1 . . . scaffold39258 WUBlastX DNA_hAT-Tip100 23489 23620 35 - . . scaffold39258 GLEAN mRNA 21383 23695 0.999661 - . ID=CGI_10003263; scaffold38784 WUBlastX LINE_L2 17423 17674 27 - . . . . . -1 -1 -1 . . . C30820 WUBlastX DNA_Harbinger 1318 1449 73 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_hAT-hATw 458075 458569 35 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX DNA_Kolobok-IS4 123305 123835 87 - . . scaffold1143 GLEAN mRNA 121955 124624 0.796524 - . ID=CGI_10009141; C35006 WUBlastX DNA_IS4EU 1292 1486 85 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_L1 162667 163122 37 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 790071 790427 71 + . . . . . -1 -1 -1 . . . C33464 WUBlastX LINE_Penelope 10976 11365 59 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_Penelope 119559 120140 57 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 134131 134367 69 + . . scaffold1665 GLEAN mRNA 129924 142467 0.651132 - . ID=CGI_10015200; scaffold1186 WUBlastX LINE_RTE-X 71791 71904 45 + . . scaffold1186 GLEAN mRNA 62909 95132 0.584728 + . ID=CGI_10010593; scaffold43878 WUBlastX LINE_RTE-X 322715 322777 20 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 984589 985008 72 + . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; C35952 WUBlastX DNA_Sola 448 651 69 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold37154 WUBlastX LINE_RTE-X 760 939 75 + . . . . . -1 -1 -1 . . . scaffold76 WUBlastX LINE_L1-Tx1 31379 31729 31 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_Jockey 380809 380856 27 + . . scaffold412 GLEAN mRNA 380663 381094 0.999998 + . ID=CGI_10018577; scaffold1189 WUBlastX LINE_L1-Tx1 711379 711735 42 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LINE_L2 515415 515591 35 - . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LINE_CR1-L2 156533 156940 36 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Copia 82402 82605 32 + . . . . . -1 -1 -1 . . . scaffold1295 WUBlastX LTR_Copia 2613 2816 32 + . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX DNA_hAT-Tip100 18210 18449 42 - . . . . . -1 -1 -1 . . . scaffold37386 WUBlastX LINE_L2 35154 35438 79 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_ERV1 490171 490521 67 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LTR_Gypsy 609228 609359 103 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LTR_Gypsy 381802 382515 48 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold43146 WUBlastX LINE_I 7324 7416 21 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_Kolobok 208428 208634 58 - . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX DNA_MuDR 334565 334681 21 + . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX DNA_MuDR 334763 335032 82 + . . scaffold43954 GLEAN mRNA 334847 335729 0.999507 + . ID=CGI_10014586; scaffold980 WUBlastX DNA_Maverick 342770 342955 74 + . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_RTE-X 129173 129409 72 + . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_RTE-X 25152 25370 84 - . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LINE_RTE-X 634 738 23 - . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LINE_RTE-X 731 904 55 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Sola 33204 33563 86 + . . . . . -1 -1 -1 . . . C28258 WUBlastX LINE_L1-Tx1 3216 3584 49 + . . C28258 GLEAN mRNA 3417 4139 0.593325 + . ID=CGI_10000414; scaffold42890 WUBlastX LINE_L1-Tx1 200435 200515 34 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_CR1 436370 436420 24 + . . . . . -1 -1 -1 . . . scaffold1247 WUBlastX DNA_TcMar-Tc1 182961 183137 58 + . . scaffold1247 GLEAN mRNA 173109 184348 0.886383 - . ID=CGI_10008950; scaffold42784 WUBlastX LINE_CR1-L2 44062 44463 72 - . . . . . -1 -1 -1 . . . scaffold41388 WUBlastX LINE_L2 61447 61542 23 - . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX LTR_Gypsy 10536 10922 60 - . . . . . -1 -1 -1 . . . C29388 WUBlastX LTR_Gypsy 3690 4307 99 + . . C29388 GLEAN mRNA 1255 5572 0.998536 + . ID=CGI_10000526; scaffold38256 WUBlastX LTR_Gypsy 3602 3961 72 + . . . . . -1 -1 -1 . . . scaffold38256 WUBlastX LTR_Gypsy 4193 4510 23 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LTR_Gypsy 382663 383148 80 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold747 WUBlastX LTR_Gypsy 349952 350497 91 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_DIRS 517088 517309 104 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_hAT-Tip100 103610 103726 20 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX DNA_hAT-Tip100 99350 99388 22 - . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX LTR_Gypsy 112948 113085 128 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L1 89289 89501 37 - . . . . . -1 -1 -1 . . . scaffold42364 WUBlastX LINE_L2 74166 74375 31 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold619 WUBlastX DNA_TcMar-Marin 696328 696600 73 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_L1-Tx1 179617 179814 74 - . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_L1-Tx1 13890 14177 67 + . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_TcMar-Tc2 5614 5745 52 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_L2 216227 216301 28 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold1093 WUBlastX LINE_DRE 43951 44298 97 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy-Cigr 529704 530027 82 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy-Cigr 530056 530448 38 - . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 80017 80457 106 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX DNA_Harbinger 503665 504123 103 - . . . . . -1 -1 -1 . . . scaffold270 WUBlastX DNA_Harbinger 56448 56630 22 + . . . . . -1 -1 -1 . . . scaffold270 WUBlastX DNA_Harbinger 56781 57050 68 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX DNA_hAT-Tip100 354420 354809 128 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold123 WUBlastX RC_Helitron 141259 141879 66 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Kolobok 340048 340095 20 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_TcMar-Fot1 754134 754370 71 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_TcMar-Fot1 754372 754506 20 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_Penelope 398298 398675 91 + . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_RTE-BovB 500666 501301 64 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 678271 678486 93 + . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_RTE-X 2332 2778 92 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-BovB 570716 571153 42 + . . scaffold337 GLEAN mRNA 562237 577539 1 - . ID=CGI_10028070; scaffold120 WUBlastX DNA_Sola 466942 467268 96 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX DNA_TcMar-Marin 8584 8862 73 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1-Tx1 320346 320822 59 + . . . . . -1 -1 -1 . . . scaffold1748 WUBlastX LINE_L2 22722 22844 103 - . . scaffold1748 GLEAN mRNA 17962 26532 0.999389 + . ID=CGI_10002255; scaffold164 WUBlastX LTR_Gypsy 53501 53899 108 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold1036 WUBlastX DNA_Kolobok-IS4 71116 71235 25 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_Kolobok-IS4 71226 71438 76 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold576 WUBlastX LTR_Gypsy 444434 444490 21 - . . scaffold576 GLEAN mRNA 442615 444769 0.841376 - . ID=CGI_10018782; scaffold983 WUBlastX DNA_NOF? 247678 247986 102 + . . scaffold983 GLEAN mRNA 244830 248843 1 - . ID=CGI_10014030; scaffold1589 WUBlastX LINE_L1 381478 381546 22 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; scaffold368 WUBlastX LTR_Gypsy 437495 437653 47 + . . . . . -1 -1 -1 . . . scaffold139 WUBlastX LINE_CR1 106197 106502 118 - . . . . . -1 -1 -1 . . . scaffold37358 WUBlastX LINE_CR1 35708 36268 63 - . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_L2 53732 53923 76 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold42556 WUBlastX LINE_L2 30332 31090 55 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_DIRS 10465 10599 64 + . . . . . -1 -1 -1 . . . C20530 WUBlastX DNA_IS4EU 316 432 65 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX RC_Helitron 122328 122621 133 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX RC_Helitron 222503 222745 47 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok 149857 150057 69 + . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold286 WUBlastX LINE_L1-Tx1 71809 72180 72 - . . scaffold286 GLEAN mRNA 70101 79780 0.990881 + . ID=CGI_10015958; scaffold542 WUBlastX LINE_L1-Tx1 231791 232381 60 + . . scaffold542 GLEAN mRNA 230390 250299 0.926479 - . ID=CGI_10014766; scaffold1670 WUBlastX LINE_CR1 399215 399331 30 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold315 WUBlastX LINE_RTE-X 317905 318000 21 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold1900 WUBlastX LINE_RTE-X 187281 187637 95 - . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LINE_RTE-X 10219 10530 90 - . . . . . -1 -1 -1 . . . scaffold258 WUBlastX LTR_Gypsy 148943 149068 20 - . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LTR_Ngaro 8333 8647 63 + . . scaffold1777 GLEAN mRNA 5363 10416 0.999547 + . ID=CGI_10003152; scaffold42 WUBlastX DNA_Kolobok 367455 367664 87 + . . scaffold42 GLEAN mRNA 366625 368271 0.99869 + . ID=CGI_10018915; scaffold70 WUBlastX LINE_L1 851719 852087 141 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-BovB 112657 113115 117 - . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LINE_RTE-X 2399 2779 89 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_RTE-X 222918 223358 54 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_RTE-X 107646 107798 66 + . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold348 WUBlastX LINE_L2 239343 239795 81 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_L2 74830 75552 97 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold707 WUBlastX LINE_L2 96972 97694 87 - . . . . . -1 -1 -1 . . . scaffold1771 WUBlastX LTR_Gypsy-Cigr 94387 94953 151 - . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold4 WUBlastX LINE_I 665788 666387 113 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_Harbinger 397404 397706 28 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 38706 39074 135 + . . . . . -1 -1 -1 . . . scaffold200 WUBlastX DNA_MuDR 64101 64331 39 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_MuDR 557867 558097 39 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_Penelope 115460 115624 69 + . . scaffold1773 GLEAN mRNA 113483 121773 0.995285 + . ID=CGI_10011228; scaffold1773 WUBlastX LINE_Penelope 115638 116210 133 + . . scaffold1773 GLEAN mRNA 113483 121773 0.995285 + . ID=CGI_10011228; scaffold219 WUBlastX LINE_L1-Tx1 132001 132138 37 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold496 WUBlastX LINE_L1-Tx1 725276 725512 69 + . . scaffold496 GLEAN mRNA 713503 727921 0.615833 - . ID=CGI_10022473; C33592 WUBlastX DNA_Zator 8894 9289 140 - . . . . . -1 -1 -1 . . . scaffold839 WUBlastX LINE_L1 86311 86733 56 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold35974 WUBlastX RC_Helitron 14358 15221 541 + . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L2 831594 832781 51 - . . . . . -1 -1 -1 . . . scaffold1474 WUBlastX LTR_Ngaro 8986 9558 121 + . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_Harbinger 202968 203102 31 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 86234 86794 87 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Ngaro 118891 119205 125 - . . . . . -1 -1 -1 . . . scaffold42634 WUBlastX DNA_TcMar-Fot1 150256 150627 163 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 38870 39265 279 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_CR1 452347 452871 503 + . . . . . -1 -1 -1 . . . scaffold37426 WUBlastX LTR_DIRS 5836 5877 27 + . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LTR_Gypsy-Cigr 27507 29738 1065 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX RC_Helitron 711638 713713 830 - . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 15618 15839 177 + . . . . . -1 -1 -1 . . . scaffold37358 WUBlastX LINE_CR1 40188 40442 178 - . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_CR1 48164 48439 72 - . . . . . -1 -1 -1 . . . scaffold407 WUBlastX LINE_L2 14495 14896 80 + . . scaffold407 GLEAN mRNA 13072 17204 0.999998 + . ID=CGI_10002626; scaffold37010 WUBlastX LTR_DIRS 31240 31632 91 - . . scaffold37010 GLEAN mRNA 9826 38663 0.529667 + . ID=CGI_10002196; scaffold37010 WUBlastX LTR_DIRS 31735 31896 22 - . . scaffold37010 GLEAN mRNA 9826 38663 0.529667 + . ID=CGI_10002196; scaffold1077 WUBlastX DNA_Harbinger 500472 500702 62 - . . . . . -1 -1 -1 . . . scaffold39730 WUBlastX DNA_TcMar-Marin 17258 17419 48 + . . scaffold39730 GLEAN mRNA 3685 28743 0.191255 - . ID=CGI_10003588; scaffold39730 WUBlastX DNA_TcMar-Marin 17258 17419 48 + . . scaffold39730 GLEAN mRNA 16282 30561 0.999947 + . ID=CGI_10003589; scaffold1462 WUBlastX LINE_RTE-X 219473 219661 26 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_RTE-X 96310 96558 90 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_RTE-X 97023 97202 24 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_RTE-X 191642 192610 49 - . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_L1-Tx1 238735 239232 54 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_L1-Tx1 239315 239464 75 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L1 639859 639969 22 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LTR_Ngaro 54737 55168 86 + . . . . . -1 -1 -1 . . . C29882 WUBlastX LTR_Gypsy 3422 3706 42 + . . . . . -1 -1 -1 . . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6641 6880 88 + . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX LINE_RTE-X 245597 246493 130 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 1594276 1594476 23 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 1594419 1595105 51 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 89547 89774 196 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_TcMar-Tc1 272433 273023 102 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_L2 617614 618411 110 + . . scaffold544 GLEAN mRNA 615493 630959 0.537216 - . ID=CGI_10022576; scaffold1138 WUBlastX RC_Helitron 193713 193898 59 - . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX DNA_TcMar-Tc1 83697 84626 115 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_Penelope 142890 143438 169 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 643113 643232 24 - . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_RTE-RTE 96922 97185 59 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LTR_Ngaro 692804 693280 180 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_L1-Tx1 523662 524054 93 + . . scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold683 WUBlastX DNA_hAT-Tol2 221868 222419 104 - . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_L1-Tx1 40135 40458 158 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_L1-Tx1 40442 41083 215 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_L1-Tx1 41576 42799 354 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_L1-Tx1 42880 43071 27 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_L1-Tx1 43065 43229 40 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_L1-Tx1 43250 43792 69 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Gypsy 111145 112086 433 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold605 WUBlastX RC_Helitron 22676 23371 305 + . . . . . -1 -1 -1 . . . scaffold1342 WUBlastX LINE_L2 4279 4758 53 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1 10652 10987 60 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1812 WUBlastX LTR_Gypsy 6 533 187 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX DNA_Kolobok 232227 232643 152 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold1335 WUBlastX LINE_Penelope 14866 15423 149 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold698 WUBlastX LINE_RTE-X 16049 16684 91 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_RTE-X 16725 17375 59 + . . . . . -1 -1 -1 . . . scaffold37358 WUBlastX LINE_CR1 36881 37582 574 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX DNA_Zator 134344 136353 1133 + . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX DNA_Zator 137249 137395 107 + . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX DNA_Zator 137492 138046 101 + . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold1054 WUBlastX LINE_L2 312831 313205 77 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold406 WUBlastX LINE_L1-Tx1 685952 686290 66 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_L1-Tx1 144786 145418 191 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 147285 147956 74 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 148042 148443 29 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold43446 WUBlastX LINE_CR1 163235 163363 41 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold22 WUBlastX LINE_L1 1561308 1562297 128 + . . . . . -1 -1 -1 . . . scaffold41452 WUBlastX LINE_L1 85700 86644 125 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 435048 435497 72 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX DNA_TcMar-Tc1 136814 137230 103 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_Sola 451687 452109 144 + . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1-Tx1 169743 169841 23 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_DIRS 300343 302370 1294 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold91 WUBlastX LTR_Gypsy-Cigr 47082 51038 1515 - . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 60053 62833 1312 + . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_RTE-X 153223 155268 1435 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_L2 154794 155111 160 + . . scaffold544 GLEAN mRNA 151326 160758 0.999999 - . ID=CGI_10022551; scaffold35406 WUBlastX RC_Helitron 14003 14485 144 + . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold1066 WUBlastX LTR_Gypsy 264586 264675 23 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LTR_Gypsy 135706 136197 77 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_Penelope 979275 979676 176 - . . . . . -1 -1 -1 . . . scaffold43240 WUBlastX DNA_TcMar-Tc1 142454 142567 47 - . . . . . -1 -1 -1 . . . scaffold43302 WUBlastX DNA_PiggyBac 57665 58399 144 + . . scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold1750 WUBlastX LTR_Pao 556721 557119 228 - . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 72063 72539 237 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Gypsy 306372 307025 546 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 368228 368407 34 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_CR1 15536 16489 742 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold43686 WUBlastX LINE_CR1 17581 17829 121 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold1601 WUBlastX LINE_L2 192460 192963 110 + . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX LINE_L2 88683 89183 149 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold1423 WUBlastX LTR_Ngaro 755311 756057 182 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LTR_Ngaro 270928 271764 162 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold975 WUBlastX DNA_NOF 292947 293426 92 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX DNA_NOF 293408 293623 36 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 23716 24171 160 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 397925 398419 38 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-BovB 760424 760699 127 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 465328 465492 85 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Gypsy 222326 223183 445 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 102288 102980 26 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX DNA_Harbinger 147399 147491 32 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LINE_RTE-X 63549 63935 193 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L2 1196057 1196116 23 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LINE_CR1 112893 113108 107 + . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LTR_DIRS 194405 194632 120 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX RC_Helitron 282727 283050 95 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX DNA_MuDR 25993 26802 209 + . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_L1-Tx1 145137 145673 183 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 104264 104728 152 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 38262 39281 560 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LTR_Pao 39329 40321 441 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LINE_L2 346888 347409 199 + . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX LINE_CR1 40261 40704 152 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold140 WUBlastX LINE_CR1-L2 345064 345348 74 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1-L2 345064 345348 74 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold1793 WUBlastX LTR_Ngaro 72336 72440 23 - . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX LTR_Ngaro 72514 72879 124 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Ngaro 138506 138616 22 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Ngaro 138684 138956 59 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 35973 36548 172 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LTR_Gypsy 122303 123457 950 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LTR_Gypsy 123459 124946 960 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy-Cigr 415579 418395 1948 - . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX LTR_Gypsy 36518 39928 1952 + . . . . . -1 -1 -1 . . . scaffold37432 WUBlastX LINE_L1 3227 3502 134 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-BovB 171736 171936 64 - . . . . . -1 -1 -1 . . . scaffold739 WUBlastX DNA_TcMar-Tc1 81609 82175 156 + . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LTR_Ngaro 28309 28581 117 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 31850 31951 48 - . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 32433 32813 88 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Maverick 1003702 1004031 110 + . . . . . -1 -1 -1 . . . scaffold41998 WUBlastX LINE_RTE-BovB 42038 44089 1798 - . . scaffold41998 GLEAN mRNA 32389 44944 0.999949 - . ID=CGI_10005911; scaffold780 WUBlastX LINE_L2 150164 150481 151 - . . scaffold780 GLEAN mRNA 138989 166483 0.986281 + . ID=CGI_10024719; scaffold248 WUBlastX LINE_RTE-X 138378 138806 205 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_L2 177047 177403 103 - . . scaffold504 GLEAN mRNA 176392 179041 1 - . ID=CGI_10016023; scaffold504 WUBlastX LINE_L2 177381 177569 36 - . . scaffold504 GLEAN mRNA 176392 179041 1 - . ID=CGI_10016023; scaffold504 WUBlastX LINE_L2 177586 177873 82 - . . scaffold504 GLEAN mRNA 176392 179041 1 - . ID=CGI_10016023; scaffold1255 WUBlastX LTR_Ngaro 20538 21239 220 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LTR_Gypsy 555972 556106 93 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold43122 WUBlastX LTR_Gypsy-Cigr 163405 164217 223 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy 204211 204654 193 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_Jockey 110808 110876 20 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX DNA_IS4EU 412177 412749 219 + . . . . . -1 -1 -1 . . . C31322 WUBlastX LINE_RTE-X 7288 8130 239 - . . C31322 GLEAN mRNA 2728 8628 1 - . ID=CGI_10000731; scaffold97 WUBlastX LTR_Gypsy 20916 21284 34 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_Harbinger 257413 257628 20 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX DNA_Harbinger 257691 258185 179 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold274 WUBlastX LINE_RTE-X 45462 45833 55 - . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_RTE-X 35282 35725 51 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Tc1 223157 223435 144 + . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_Gypsy 24249 25001 827 + . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_Gypsy 27802 28377 306 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_DIRS 344040 344351 118 - . . . . . -1 -1 -1 . . . C34726 WUBlastX DNA_Maverick 4328 4963 98 - . . . . . -1 -1 -1 . . . C34726 WUBlastX DNA_Maverick 5004 5075 23 - . . . . . -1 -1 -1 . . . C34726 WUBlastX DNA_Maverick 3594 3728 33 - . . . . . -1 -1 -1 . . . C34726 WUBlastX DNA_Maverick 3760 3840 36 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 233922 234338 81 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_RTE-X 201296 201643 69 + . . scaffold1897 GLEAN mRNA 190471 249775 0.317357 - . ID=CGI_10020917; scaffold950 WUBlastX LINE_L2 390058 391149 141 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold20 WUBlastX DNA_Harbinger 519902 520120 49 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 68247 68348 24 - . . . . . -1 -1 -1 . . . scaffold37408 WUBlastX LTR_DIRS 4240 4554 59 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_Penelope 602888 603487 281 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LTR_Ngaro 35832 36347 152 - . . . . . -1 -1 -1 . . . scaffold148 WUBlastX DNA_Harbinger 38390 38827 216 - . . . . . -1 -1 -1 . . . scaffold44064 WUBlastX DNA_TcMar-Tc1 963 1124 78 + . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_L1-Tx1 185360 185875 219 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 140491 140580 51 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 140574 141344 259 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 1042835 1042951 66 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold308 WUBlastX DNA_hAT-Tip100 103710 104438 141 - . . scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold1352 WUBlastX LTR_Gypsy 193833 195260 302 + . . . . . -1 -1 -1 . . . C35068 WUBlastX LTR_Copia 17226 17597 381 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 146425 146640 90 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LINE_CR1-L2 88897 90063 262 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_L2 253469 254158 296 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 549094 549636 367 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_R2-Hero 558410 558874 337 - . . scaffold563 GLEAN mRNA 542480 589820 0.135238 + . ID=CGI_10019846; scaffold41086 WUBlastX DNA_Maverick 71134 71646 346 + . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX LTR_Ngaro 20766 21362 162 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX DNA_En-Spm 131010 131903 265 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-X 285781 286011 111 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_RTE-X 224483 225685 204 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Ngaro 300040 300573 89 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_TcMar-Marin 2759 2983 159 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 791870 792208 285 - . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 80448 81071 280 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LTR_Gypsy 66236 66541 65 + . . . . . -1 -1 -1 . . . scaffold292 WUBlastX DNA_TcMar-Marin 37462 37749 191 + . . scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold41534 WUBlastX LINE_L1-Tx1 102207 102584 223 + . . . . . -1 -1 -1 . . . scaffold43530 WUBlastX LINE_RTE-X 64057 65478 255 - . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LTR_DIRS 104151 104252 48 - . . . . . -1 -1 -1 . . . C22458 WUBlastX LTR_Ngaro 2 868 328 - . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX DNA_Kolobok-IS4 278 1021 413 - . . scaffold38678 GLEAN mRNA 233 1096 1 - . ID=CGI_10002904; scaffold1002 WUBlastX DNA_Merlin 45314 46018 359 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_L1-Tx1 464680 465027 150 - . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold601 WUBlastX DNA_Harbinger 343956 344465 168 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 37838 37876 20 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 216463 216795 77 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LINE_RTE-X 146524 147342 169 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_DIRS 298679 298921 180 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_DIRS 299011 299505 194 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_DIRS 76945 77154 105 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_DIRS 78123 79268 280 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_DIRS 97755 98201 92 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 71309 71764 70 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1005851 1006600 187 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX DNA_Maverick 109495 109620 68 + . . scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold22 WUBlastX LINE_RTE-X 782889 783008 48 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_L1-Tx1 116726 117409 426 + . . scaffold976 GLEAN mRNA 100649 120076 0.999949 + . ID=CGI_10014006; scaffold1077 WUBlastX LTR_Ngaro 168079 168372 34 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Harbinger 426388 426453 29 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Harbinger 518498 519229 376 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Harbinger 520136 520402 64 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_IS4EU 387177 387539 50 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_Kolobok-IS4 115554 116072 33 + . . . . . -1 -1 -1 . . . scaffold39526 WUBlastX LTR_Ngaro 61943 62233 90 - . . . . . -1 -1 -1 . . . scaffold38966 WUBlastX DNA_TcMar-Tc1 52817 53455 305 + . . scaffold38966 GLEAN mRNA 40711 56502 0.505852 + . ID=CGI_10003113; scaffold192 WUBlastX LINE_RTE-X 560767 561318 337 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_RTE-X 561357 561572 159 + . . . . . -1 -1 -1 . . . scaffold38736 WUBlastX DNA_Harbinger 52221 52916 282 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 274506 275561 252 - . . scaffold593 GLEAN mRNA 274494 275384 0.999999 - . ID=CGI_10022520; scaffold719 WUBlastX LINE_RTE-X 311509 312366 325 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1039372 1039626 23 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LINE_L1-Tx1 216492 218138 369 - . . scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold1213 WUBlastX LINE_L1-Tx1 417654 418061 101 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold48 WUBlastX LINE_CR1-L2 734691 734870 26 + . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LTR_Ngaro 70231 70668 219 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX DNA_Kolobok 84865 85035 83 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX DNA_Kolobok 85154 85315 68 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX DNA_Kolobok 85888 86061 106 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX DNA_Kolobok 86282 87070 132 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_RTE-X 135609 135707 45 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_RTE-X 135995 136945 365 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_Gypsy 929555 930223 555 + . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LTR_Ngaro 90445 90723 77 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Gypsy 629238 629432 119 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1-Tx1 868520 869899 196 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Ngaro 650500 651000 272 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Ngaro 651083 651439 239 - . . . . . -1 -1 -1 . . . scaffold1452 WUBlastX DNA_hAT-Ac 14557 14736 52 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_TcMar-Marin 332400 333065 341 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LINE_L1-Tx1 73828 74352 168 + . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LINE_L1-Tx1 74255 75427 139 + . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold41316 WUBlastX LINE_L1-Tx1 95577 96500 453 + . . . . . -1 -1 -1 . . . scaffold36816 WUBlastX LINE_L1-Tx1 989 1702 526 + . . . . . -1 -1 -1 . . . C31012 WUBlastX LINE_L1-Tx1 7237 8697 292 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX DNA_TcMar-Tc1 872781 873314 299 - . . scaffold79 GLEAN mRNA 869143 880340 0.999287 - . ID=CGI_10024652; scaffold347 WUBlastX DNA_TcMar-Tc1 498779 499213 219 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 600358 601353 366 + . . . . . -1 -1 -1 . . . scaffold40512 WUBlastX DNA_IS4EU 53550 54464 446 - . . scaffold40512 GLEAN mRNA 53892 54428 0.999999 - . ID=CGI_10004194; scaffold40512 WUBlastX DNA_IS4EU 53550 54464 446 - . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold40512 WUBlastX DNA_IS4EU 55327 55611 46 - . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold471 WUBlastX DNA_IS4EU 324212 324640 21 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Maverick 209048 209113 22 - . . scaffold31 GLEAN mRNA 202867 210562 0.991871 - . ID=CGI_10013561; scaffold1703 WUBlastX DNA_Maverick 222264 223553 140 - . . scaffold1703 GLEAN mRNA 215396 234951 0.309503 + . ID=CGI_10023049; scaffold935 WUBlastX LINE_RTE-X 44976 46376 498 + . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_L1 147356 148891 357 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1-Tx1 127183 127860 296 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1-Tx1 127865 128065 34 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1-Tx1 128064 128336 124 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1041190 1041732 204 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LTR_Gypsy-Cigr 148898 150229 548 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX DNA_Maverick 1682 2548 483 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LINE_L1-Tx1 183901 184413 212 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 280669 280803 25 + . . . . . -1 -1 -1 . . . scaffold32356 WUBlastX LTR_Pao 4160 4303 48 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy-Cigr 55096 55995 390 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LTR_Gypsy 4 267 82 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-BovB 368683 370311 490 - . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 25356 25460 74 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 26038 26370 55 + . . . . . -1 -1 -1 . . . scaffold43084 WUBlastX LINE_Penelope 2887 3426 258 - . . scaffold43084 GLEAN mRNA 1752 8491 0.988218 - . ID=CGI_10008563; scaffold1722 WUBlastX LINE_RTE-X 310365 311876 561 - . . scaffold1722 GLEAN mRNA 308195 316246 0.999949 - . ID=CGI_10014888; scaffold1584 WUBlastX LINE_RTE-BovB 42682 43059 272 - . . . . . -1 -1 -1 . . . scaffold1584 WUBlastX LINE_RTE-BovB 43040 43246 132 - . . . . . -1 -1 -1 . . . scaffold1584 WUBlastX LINE_RTE-BovB 43273 43734 308 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy 73508 74518 614 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_RTE-X 550731 551924 216 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 373614 373658 20 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold1179 WUBlastX LTR_Gypsy 872555 873133 395 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LINE_L1-Tx1 97466 97744 200 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LINE_L1-Tx1 98377 99672 433 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 143876 144619 183 - . . scaffold619 GLEAN mRNA 133305 165039 0.859619 - . ID=CGI_10025755; C32272 WUBlastX LTR_Gypsy 10180 10668 293 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_P 408795 409943 265 - . . scaffold433 GLEAN mRNA 407360 429733 0.877924 + . ID=CGI_10027068; scaffold1333 WUBlastX LTR_Ngaro 55292 56503 807 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold38904 WUBlastX RC_Helitron 42748 42963 41 - . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LINE_RTE-X 262359 264071 692 + . . scaffold1792 GLEAN mRNA 252899 271519 0.999949 - . ID=CGI_10012749; scaffold41588 WUBlastX LINE_L1-Tx1 102749 103963 498 + . . . . . -1 -1 -1 . . . scaffold41588 WUBlastX LINE_L1-Tx1 103995 104579 21 + . . . . . -1 -1 -1 . . . scaffold41588 WUBlastX LINE_L1-Tx1 104669 105289 72 + . . . . . -1 -1 -1 . . . C33592 WUBlastX LTR_Gypsy 8 787 689 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1-Tx1 168516 168773 215 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1-Tx1 168778 170055 577 - . . . . . -1 -1 -1 . . . C30526 WUBlastX DNA_TcMar-Tc2 1439 2503 822 - . . . . . -1 -1 -1 . . . scaffold1701 WUBlastX LTR_Copia 41120 41485 21 + . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX LTR_Copia 35104 35373 53 + . . . . . -1 -1 -1 . . . scaffold39514 WUBlastX DNA_Chapaev 41295 41438 28 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LTR_Pao 103588 103800 68 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Pao 288316 288804 83 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; C27578 WUBlastX LINE_L2 26 598 24 - . . . . . -1 -1 -1 . . . scaffold36850 WUBlastX LINE_L2 6465 6971 21 - . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_CR1 134177 134308 62 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 614811 614948 25 - . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX LTR_Gypsy 353093 353149 25 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 266699 267247 28 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1900 WUBlastX LTR_Gypsy 378460 378780 79 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 122432 122773 81 + . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX LTR_Ngaro 33647 33796 63 - . . . . . -1 -1 -1 . . . scaffold1881 WUBlastX LINE_L2 101724 102320 53 + . . . . . -1 -1 -1 . . . scaffold387 WUBlastX LTR_Gypsy 35135 35368 55 - . . scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold186 WUBlastX DNA_Harbinger 16363 16542 58 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_IS4EU 23532 23945 48 - . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 71398 72309 49 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 206358 206468 35 - . . . . . -1 -1 -1 . . . scaffold1481 WUBlastX LINE_L1-Tx1 28284 28559 73 + . . scaffold1481 GLEAN mRNA 18084 39742 0.999949 - . ID=CGI_10003892; scaffold1611 WUBlastX DNA_Kolobok-Hyd 160848 160904 32 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_L1-Tx1 29440 29808 45 + . . scaffold447 GLEAN mRNA 1608 38607 0.995957 + . ID=CGI_10014216; scaffold1317 WUBlastX LINE_L1 62861 62980 78 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L1 105863 106267 57 - . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX LINE_L1 177475 177813 90 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_L1 117153 117647 90 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L1 308671 308850 23 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_Penelope 280394 280507 47 - . . scaffold502 GLEAN mRNA 265921 292012 0.339102 + . ID=CGI_10024318; scaffold1698 WUBlastX DNA_Merlin 349394 349858 25 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX DNA_TcMar-Marin 165334 165447 41 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX DNA_TcMar-Marin 35761 35820 21 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_CR1 2675 3022 23 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_L1 155468 155647 75 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 10240 10629 32 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 218952 219137 71 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 1570516 1570836 34 - . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LINE_Proto2 75193 75327 28 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX DNA_Maverick 47304 47426 30 - . . . . . -1 -1 -1 . . . scaffold938 WUBlastX LINE_RTE-X 114 248 23 + . . . . . -1 -1 -1 . . . scaffold938 WUBlastX LINE_RTE-X 293 439 34 + . . . . . -1 -1 -1 . . . scaffold938 WUBlastX LINE_RTE-X 973 1038 20 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 225118 225426 51 - . . scaffold678 GLEAN mRNA 217063 237953 0.926398 - . ID=CGI_10026343; scaffold1322 WUBlastX LINE_RTE-X 263636 263809 52 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_RTE-X 764637 764789 28 + . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_RTE-X 150781 151071 29 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_RTE-X 663186 663467 25 - . . scaffold1154 GLEAN mRNA 649267 674582 0.695104 - . ID=CGI_10026182; scaffold1230 WUBlastX LINE_RTE-X 2765 2881 68 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX RC_Helitron 221760 221864 21 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1157 WUBlastX LINE_L2 229176 229319 29 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold59 WUBlastX LINE_CR1-L2 212377 212415 28 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_CR1-L2 837100 837402 50 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Copia 224361 224408 21 + . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LINE_L1 2268 2306 22 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Gypsy 325470 325589 31 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 213809 214030 33 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 32381 32539 77 - . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX DNA_Harbinger 143580 143660 45 + . . . . . -1 -1 -1 . . . C6987 WUBlastX LTR_Gypsy 1 129 100 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Gypsy 173150 173659 66 - . . . . . -1 -1 -1 . . . scaffold39974 WUBlastX DNA_IS4EU 6186 6503 51 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_hAT-hATw 224231 224482 67 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 1435397 1435525 42 - . . . . . -1 -1 -1 . . . scaffold41390 WUBlastX DNA_Kolobok-Hyd 62103 62480 74 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 475917 476081 75 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 208362 208664 56 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_RTE-X 288447 288665 22 - . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX LINE_RTE-X 9929 10111 61 + . . . . . -1 -1 -1 . . . scaffold35194 WUBlastX DNA_Maverick 12596 12781 41 - . . . . . -1 -1 -1 . . . scaffold787 WUBlastX DNA_PiggyBac 82064 82384 36 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX DNA_PiggyBac 668698 668991 56 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-RTE 84993 85280 63 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Sola 256256 256336 45 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Sola 33306 33662 86 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 363687 363962 73 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy-Cigr 54977 55156 71 - . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold1738 WUBlastX LTR_Copia 10108 10257 28 + . . . . . -1 -1 -1 . . . C28702 WUBlastX DNA_TcMar-Tc1 2069 2245 52 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Pao 559039 559275 20 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LINE_L2 88347 88409 22 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_CR1-L2 177180 177509 21 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_CR1-L2 788996 789214 96 + . . scaffold392 GLEAN mRNA 784797 793663 0.791625 - . ID=CGI_10024236; scaffold1371 WUBlastX LINE_CR1 7716 8039 95 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 132236 132439 28 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Ngaro 377251 377487 70 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_DIRS 471290 471655 80 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX LTR_Gypsy 3364 3702 89 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX DNA_hAT-Ac 130029 130571 21 - . . . . . -1 -1 -1 . . . scaffold41346 WUBlastX DNA_IS4EU 44235 44513 71 + . . . . . -1 -1 -1 . . . scaffold852 WUBlastX DNA_IS4EU 127389 127541 52 + . . scaffold852 GLEAN mRNA 121104 128274 1 + . ID=CGI_10012039; scaffold332 WUBlastX DNA_TcMar-Marin 368182 368427 34 - . . scaffold332 GLEAN mRNA 366757 371898 1 - . ID=CGI_10020884; scaffold332 WUBlastX DNA_TcMar-Marin 368609 368776 36 - . . scaffold332 GLEAN mRNA 366757 371898 1 - . ID=CGI_10020884; scaffold82 WUBlastX LINE_I 602202 602798 59 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L1-Tx1 189756 189914 85 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_Penelope 405408 405791 37 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold425 WUBlastX LTR_Ngaro 95575 95784 21 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Ngaro 95783 95971 61 + . . . . . -1 -1 -1 . . . scaffold866 WUBlastX LINE_L2 95251 95469 32 + . . scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold149 WUBlastX LINE_RTE-BovB 233753 234058 80 - . . scaffold149 GLEAN mRNA 233711 233881 0.960172 - . ID=CGI_10025296; scaffold1750 WUBlastX LINE_RTE-BovB 646860 646976 20 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_RTE-X 189685 189942 40 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold557 WUBlastX DNA_TcMar-Pogo 400264 400524 75 + . . . . . -1 -1 -1 . . . C9171 WUBlastX LINE_L1-Tx1 20 145 107 + . . . . . -1 -1 -1 . . . scaffold36850 WUBlastX LINE_CR1 6591 6971 80 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_Penelope 644709 645293 63 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_Penelope 761 1330 27 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-X 647945 648370 48 - . . . . . -1 -1 -1 . . . C29438 WUBlastX LINE_RTE-X 2504 2878 37 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold38780 WUBlastX DNA_PiggyBac 6648 6794 70 - . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold783 WUBlastX LINE_RTE-X 135984 136460 73 - . . scaffold783 GLEAN mRNA 131104 140635 0.99762 + . ID=CGI_10011677; scaffold41816 WUBlastX LTR_Ngaro 25070 25231 68 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 25377 25496 27 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold1080 WUBlastX LINE_L2 103548 103886 44 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 754422 754706 55 + . . . . . -1 -1 -1 . . . scaffold40526 WUBlastX LTR_DIRS? 67036 67182 88 - . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX LTR_Ngaro 42120 42767 30 + . . scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold1624 WUBlastX DNA_Crypton 49555 50031 86 + . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX DNA_Crypton 134994 135200 107 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_P 67128 67418 104 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_Kolobok 208539 208676 23 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_Kolobok 209165 209329 49 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_RTE-X 727519 727707 78 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Maverick 181373 181786 83 - . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX LINE_RTE-X 38536 38760 66 + . . . . . -1 -1 -1 . . . scaffold40050 WUBlastX LINE_RTE-X 27322 27549 86 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1158439 1158756 84 - . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_CR1-L2 39823 39870 51 + . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Pao 34771 35070 72 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 60175 60696 89 - . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX DNA_hAT 131300 131416 62 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold368 WUBlastX LINE_CR1 176167 176613 104 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 656206 656967 107 - . . . . . -1 -1 -1 . . . scaffold41082 WUBlastX LINE_Jockey 55860 56441 62 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_hAT-Tip100 282614 282739 69 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX RC_Helitron 1434108 1434704 104 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Fot1 269560 269847 114 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_RTE-X 187215 187616 90 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc1 288072 288203 28 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_RTE-X 269034 269192 114 + . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LINE_RTE-BovB 127806 128669 59 + . . scaffold585 GLEAN mRNA 123270 129092 1 - . ID=CGI_10005544; scaffold1154 WUBlastX LINE_L1-Tx1 842973 843098 30 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LINE_L2 206326 206649 80 + . . scaffold1682 GLEAN mRNA 191866 233299 0.316426 - . ID=CGI_10016049; scaffold773 WUBlastX LINE_L2 151156 151680 64 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold801 WUBlastX LTR_Ngaro 569140 569970 60 - . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LTR_DIRS 13432 13650 56 - . . scaffold1650 GLEAN mRNA 11438 15410 0.647114 - . ID=CGI_10017768; scaffold43314 WUBlastX DNA_hAT-hATw 156566 156724 62 - . . . . . -1 -1 -1 . . . C28808 WUBlastX LTR_Gypsy 2861 3025 80 + . . . . . -1 -1 -1 . . . C28808 WUBlastX LTR_Gypsy 3718 3969 43 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_ERVK 953860 953994 38 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_L1-Tx1 3199 3603 25 - . . . . . -1 -1 -1 . . . scaffold34732 WUBlastX LINE_L1-Tx1 16104 16385 47 + . . scaffold34732 GLEAN mRNA 11726 18752 1 - . ID=CGI_10001335; scaffold82 WUBlastX LINE_L1-Tx1 1040357 1040761 25 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 4050 4229 102 - . . scaffold1448 GLEAN mRNA 631 18510 0.999948 + . ID=CGI_10011852; scaffold1447 WUBlastX LINE_RTE-X 149743 150027 115 - . . scaffold1447 GLEAN mRNA 145066 154561 0.838589 - . ID=CGI_10013818; scaffold631 WUBlastX LINE_RTE-X 224656 224961 69 + . . scaffold631 GLEAN mRNA 219246 234334 0.970776 - . ID=CGI_10014178; scaffold211 WUBlastX LINE_RTE-X 977066 977377 73 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_DIRS 584602 585588 60 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 208225 208377 44 - . . . . . -1 -1 -1 . . . scaffold1519 WUBlastX DNA_Sola 32710 33081 33 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_L1-Tx1 100514 101161 21 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1-Tx1 208383 208775 47 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_CR1 398765 399175 104 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold896 WUBlastX LINE_CR1-L2 498485 498736 78 + . . . . . -1 -1 -1 . . . scaffold40916 WUBlastX LINE_L2 38182 38928 80 + . . scaffold40916 GLEAN mRNA 5250 52256 0.246631 + . ID=CGI_10004570; scaffold39222 WUBlastX LINE_L2 1079 1825 80 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L2 174886 175155 27 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 149582 149641 24 - . . . . . -1 -1 -1 . . . scaffold40828 WUBlastX LTR_Gypsy 57493 57741 87 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold42030 WUBlastX LTR_Gypsy 14224 14346 31 + . . scaffold42030 GLEAN mRNA 13387 15078 0.965896 + . ID=CGI_10006041; scaffold40010 WUBlastX RC_Helitron 41651 41890 38 - . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX LINE_L1 330307 330498 40 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_L1-Tx1 207247 207696 97 + . . . . . -1 -1 -1 . . . scaffold38774 WUBlastX DNA_P 25061 25186 79 + . . . . . -1 -1 -1 . . . scaffold38774 WUBlastX DNA_P 25756 25863 60 + . . . . . -1 -1 -1 . . . scaffold38774 WUBlastX DNA_P 26468 26605 44 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LINE_Penelope 49849 50076 28 + . . . . . -1 -1 -1 . . . scaffold41988 WUBlastX DNA_PiggyBac 97004 97144 57 + . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 29871 30107 67 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_DIRS 31133 31312 108 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_L1-Tx1 783044 783439 84 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 811344 811844 45 + . . . . . -1 -1 -1 . . . scaffold38580 WUBlastX DNA_Merlin 54475 55002 96 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 932717 932854 135 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Ngaro 504865 505245 102 - . . . . . -1 -1 -1 . . . scaffold39120 WUBlastX DNA_Harbinger 63782 64240 132 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 350273 350848 56 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 234985 235110 67 + . . . . . -1 -1 -1 . . . C29022 WUBlastX DNA_Harbinger 4279 4536 65 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX DNA_Harbinger 8441 8863 77 - . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 8441 8863 77 - . . scaffold38978 GLEAN mRNA 7539 8521 0.655792 - . ID=CGI_10003127; scaffold12 WUBlastX DNA_TcMar-Tc1 511849 512316 113 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX DNA_TcMar-Tc1 156267 156509 76 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1 334704 334838 24 + . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_L1 48280 49218 44 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Maverick 546391 546663 116 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_RTE-X 1028 1393 86 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_RTE-X 274766 275128 122 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Tc1 28617 28739 58 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold1525 WUBlastX LTR_Pao 142435 143406 102 + . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Ngaro 15865 16245 70 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_IS4EU 191231 191386 107 - . . scaffold419 GLEAN mRNA 187518 193297 1 - . ID=CGI_10028330; scaffold659 WUBlastX DNA_IS4EU 14258 14575 77 - . . scaffold659 GLEAN mRNA 29 26278 0.692942 + . ID=CGI_10014692; scaffold867 WUBlastX LTR_Ngaro 615787 616308 133 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_DIRS 918217 918426 26 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_DIRS 918456 918689 77 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_L1-Tx1 330826 331209 120 + . . . . . -1 -1 -1 . . . scaffold38210 WUBlastX LINE_RTE-X 23150 23869 144 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_RTE-X 24588 24764 140 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_RTE-X 24776 25924 305 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold43598 WUBlastX DNA_En-Spm 93668 94195 385 - . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX DNA_En-Spm 93273 93641 181 - . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 84950 85021 28 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 382625 382855 76 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LINE_L1-Tx1 151422 153134 432 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_CR1-L2 866498 866704 48 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Crypton 595826 596782 109 + . . scaffold204 GLEAN mRNA 573438 596887 0.209879 + . ID=CGI_10026118; scaffold597 WUBlastX LTR_Gypsy 98120 98875 107 + . . . . . -1 -1 -1 . . . scaffold415 WUBlastX DNA_MuDR 58170 58727 117 + . . . . . -1 -1 -1 . . . scaffold1231 WUBlastX LINE_RTE-BovB 106436 106615 57 + . . scaffold1231 GLEAN mRNA 79934 107425 0.93438 + . ID=CGI_10004703; scaffold406 WUBlastX LINE_RTE-X 852706 853140 93 + . . . . . -1 -1 -1 . . . scaffold1584 WUBlastX LINE_RTE-X 91995 92426 94 + . . scaffold1584 GLEAN mRNA 73868 96669 0.999351 - . ID=CGI_10015073; scaffold29334 WUBlastX LINE_RTE-X 4254 4736 81 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_RTE-X 44509 44751 92 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LTR_Ngaro 145108 145347 78 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LTR_Ngaro 145368 145496 62 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 179411 179623 93 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_RTE-X 559013 560536 483 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_L1-Tx1 686689 687372 148 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 687516 687845 169 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 687827 688393 197 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 688612 688911 89 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 688929 689171 152 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold580 WUBlastX LTR_Gypsy-Troyk 547518 547784 72 + . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold146 WUBlastX LINE_CR1 586684 587337 103 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L2 1209299 1209541 98 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold36092 WUBlastX LTR_Gypsy 20012 21046 85 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_IS4EU 82470 82760 143 + . . scaffold43660 GLEAN mRNA 73296 94423 0.650662 - . ID=CGI_10011661; scaffold1244 WUBlastX LINE_L1 100098 100226 24 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold372 WUBlastX LINE_L1 10131 10208 20 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LTR_Ngaro 342937 343533 105 - . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Maverick 81415 81759 101 - . . . . . -1 -1 -1 . . . scaffold982 WUBlastX LINE_RTE-X 6730 7068 61 - . . . . . -1 -1 -1 . . . scaffold982 WUBlastX LINE_RTE-X 7190 7306 72 - . . . . . -1 -1 -1 . . . C13292 WUBlastX LINE_RTE-X 5 214 177 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_RTE-X 375462 375719 166 - . . scaffold599 GLEAN mRNA 372668 382241 0.88989 - . ID=CGI_10021718; scaffold86 WUBlastX LINE_RTE-X 33166 33246 31 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 33692 34477 211 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1 156643 157014 185 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 236344 236463 53 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_DIRS 470092 471486 746 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold1329 WUBlastX LINE_L2 111620 112078 173 - . . . . . -1 -1 -1 . . . scaffold1595 WUBlastX LINE_CR1-L2 10756 11064 165 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_CR1-L2 55078 55158 48 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 833 1135 107 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_Harbinger 398045 398149 35 + . . . . . -1 -1 -1 . . . scaffold1501 WUBlastX DNA_Kolobok 12902 13975 98 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 2640 3407 84 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 414832 415284 170 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold950 WUBlastX LINE_L1-Tx1 101197 101556 151 + . . scaffold950 GLEAN mRNA 86388 112962 1 - . ID=CGI_10022920; scaffold1024 WUBlastX LINE_CR1 70775 71029 195 + . . scaffold1024 GLEAN mRNA 70811 87216 0.389681 + . ID=CGI_10028519; scaffold191 WUBlastX DNA_En-Spm 51847 52875 756 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_En-Spm 53066 53536 149 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LTR_Ngaro 181260 181607 31 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LTR_Ngaro 54737 55078 116 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Harbinger 270999 271142 23 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold456 WUBlastX LTR_Gypsy 141402 141776 73 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold1403 WUBlastX DNA_IS4EU 568393 568659 127 - . . . . . -1 -1 -1 . . . C24520 WUBlastX LINE_Penelope 1920 2315 161 + . . . . . -1 -1 -1 . . . scaffold40832 WUBlastX LINE_RTE-BovB 81845 81904 25 - . . scaffold40832 GLEAN mRNA 51373 82869 0.350561 + . ID=CGI_10004457; scaffold433 WUBlastX DNA_Maverick 1261563 1261664 27 + . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold602 WUBlastX DNA_TcMar-Tc1 331374 331667 166 - . . . . . -1 -1 -1 . . . scaffold38162 WUBlastX LTR_Gypsy 35554 36087 395 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 142799 143221 47 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy-Cigr 1027374 1027430 20 - . . . . . -1 -1 -1 . . . scaffold1644 WUBlastX DNA_Academ 57975 59054 500 - . . . . . -1 -1 -1 . . . scaffold1644 WUBlastX DNA_Academ 59113 59634 164 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 60830 61432 135 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 62122 62364 57 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 62342 62539 67 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold42530 WUBlastX LINE_L2 46387 46458 27 + . . scaffold42530 GLEAN mRNA 44450 55395 0.966018 + . ID=CGI_10007161; scaffold908 WUBlastX DNA_IS4EU 34172 34837 161 + . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LINE_L1-Tx1 185465 185575 51 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_PiggyBac 609026 609265 35 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold241 WUBlastX LINE_RTE-X 760727 760906 53 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_RTE-BovB 134252 134545 35 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_RTE-BovB 134529 135017 161 - . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LINE_L1-Tx1 42504 42833 61 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1-Tx1 110068 110505 34 + . . . . . -1 -1 -1 . . . scaffold35336 WUBlastX DNA_En-Spm 5616 7898 1261 + . . scaffold35336 GLEAN mRNA 20 10310 0.999999 - . ID=CGI_10001479; scaffold35336 WUBlastX DNA_En-Spm 5616 7898 1261 + . . scaffold35336 GLEAN mRNA 6372 7910 0.999785 + . ID=CGI_10001480; scaffold1108 WUBlastX DNA_En-Spm 63562 65844 1258 - . . scaffold1108 GLEAN mRNA 63550 64854 0.999999 - . ID=CGI_10021958; scaffold361 WUBlastX LINE_CR1 441107 441760 68 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_CR1-L2 1140900 1140980 43 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_CR1 264198 264392 29 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Pao 548481 549599 164 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 57171 57464 123 + . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1-Tx1 171063 171245 38 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_TcMar-Tc1 20497 20904 35 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX LTR_Gypsy-Cigr 98959 100572 935 - . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_L2 48083 48418 29 - . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_L2 48661 48936 125 - . . . . . -1 -1 -1 . . . scaffold42684 WUBlastX DNA_En-Spm 126610 127422 171 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_En-Spm 121369 121581 37 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_L1 268951 269415 45 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Merlin 50391 50810 158 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 50391 50810 158 + . . scaffold39196 GLEAN mRNA 39677 52332 0.583111 + . ID=CGI_10003218; scaffold142 WUBlastX DNA_TcMar-Marin 95825 96112 146 + . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_I 7258 7845 160 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 45347 45619 188 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 45618 46298 25 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_Harbinger 12305 12571 128 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_Harbinger 12824 12958 60 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_Jockey 91931 92203 88 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX DNA_Kolobok 66109 66399 117 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX DNA_Kolobok 67747 67926 52 + . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX LINE_RTE-X 1285 1884 147 + . . scaffold1373 GLEAN mRNA 600 7221 1 - . ID=CGI_10007903; scaffold38298 WUBlastX LINE_RTE-X 7036 7605 174 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 80055 80579 161 - . . . . . -1 -1 -1 . . . scaffold194 WUBlastX RC_Helitron 244624 244779 28 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 16788 17309 308 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_CR1 30324 30788 241 + . . . . . -1 -1 -1 . . . scaffold1474 WUBlastX LTR_Ngaro 8855 8959 33 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Maverick 325656 326156 221 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_RTE-X 41600 42073 202 - . . scaffold602 GLEAN mRNA 13092 44157 0.909253 + . ID=CGI_10023171; scaffold829 WUBlastX DNA_TcMar-Pogo 592274 592804 112 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold87 WUBlastX LTR_Gypsy 130944 131378 345 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_CR1-L2 290403 290732 82 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LTR_DIRS 317796 318140 168 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold404 WUBlastX LTR_DIRS 318101 318646 34 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold581 WUBlastX LTR_Gypsy 207470 207805 96 + . . . . . -1 -1 -1 . . . scaffold36170 WUBlastX LTR_Gypsy 14268 14612 115 + . . . . . -1 -1 -1 . . . scaffold36170 WUBlastX LTR_Gypsy 14582 14986 136 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_IS4EU 466294 466920 226 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 83151 85529 1980 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Pao 109700 110035 60 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_CR1 12482 12640 86 - . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_RTE-BovB 111417 111650 56 - . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_RTE-BovB 112156 112260 47 - . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_RTE-BovB 112698 113159 101 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX DNA_Sola 100202 100378 22 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Pao 1018963 1020006 784 - . . . . . -1 -1 -1 . . . scaffold41346 WUBlastX DNA_P 38350 39240 106 + . . . . . -1 -1 -1 . . . scaffold41346 WUBlastX DNA_P 39582 39737 22 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 78977 79453 134 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_PiggyBac 611248 611604 110 + . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 101968 102288 124 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold347 WUBlastX LINE_L1-Tx1 62015 62260 43 - . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LTR_DIRS 11855 12256 92 - . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LTR_DIRS 12510 12824 49 - . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LTR_DIRS 13781 13867 33 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L1-Tx1 513275 513757 220 + . . . . . -1 -1 -1 . . . scaffold36928 WUBlastX LINE_L1-Tx1 33761 34051 133 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Pao 360711 361394 592 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_En-Spm 1078824 1079402 46 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy 240504 240791 137 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold43836 WUBlastX DNA_IS4EU 17640 18179 274 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 300512 300832 48 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_L2 72036 72578 264 + . . scaffold588 GLEAN mRNA 27826 75048 0.701659 + . ID=CGI_10016209; scaffold42022 WUBlastX DNA_TcMar-Tc1 107538 107984 140 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-BovB 17144 18556 114 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 128047 128349 145 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold1186 WUBlastX LTR_Pao 203845 205638 1384 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1132 WUBlastX LINE_CR1 751756 752463 189 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 13871 14800 185 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 615719 616258 151 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 616278 616466 132 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_DIRS 215771 216439 264 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 42106 44541 1665 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_L2 166914 168224 187 - . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 55526 56326 314 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 23614 24288 308 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX RC_Helitron 283661 283975 20 - . . . . . -1 -1 -1 . . . C32054 WUBlastX LTR_Gypsy 2249 2296 23 + . . . . . -1 -1 -1 . . . scaffold37740 WUBlastX DNA_Harbinger 46979 47257 177 - . . . . . -1 -1 -1 . . . C33658 WUBlastX LINE_L1-Tx1 4267 5265 279 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT 745837 747360 277 + . . scaffold619 GLEAN mRNA 741975 747474 1 + . ID=CGI_10025783; scaffold1009 WUBlastX LTR_Ngaro 1344712 1344840 21 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 227942 228826 188 - . . . . . -1 -1 -1 . . . scaffold32786 WUBlastX DNA_IS4EU 9237 9773 339 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Ngaro 290760 291329 302 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold393 WUBlastX LTR_Gypsy 994215 994325 36 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 620502 620774 153 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 620779 620943 94 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 621001 621252 42 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_I 237191 239224 241 + . . scaffold142 GLEAN mRNA 226750 254431 0.969071 + . ID=CGI_10026760; scaffold1181 WUBlastX LINE_CR1-L2 109059 109550 213 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Gypsy 628369 629199 344 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 513344 513805 50 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 513371 513727 59 - . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 42267 42479 24 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 81662 81754 37 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 53658 53771 64 + . . . . . -1 -1 -1 . . . C31902 WUBlastX LTR_DIRS 8098 8592 203 - . . . . . -1 -1 -1 . . . C31902 WUBlastX LTR_DIRS 8625 8861 100 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L2 65379 65780 226 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_L1-Tx1 114065 114613 262 + . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LINE_RTE-X 81942 82190 108 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LTR_Gypsy 19964 20203 57 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LTR_Gypsy 20427 20891 279 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX DNA_Zator 178323 178508 59 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LTR_Pao 145544 147238 310 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 504782 505129 29 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 190119 190313 62 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 84488 84565 37 + . . . . . -1 -1 -1 . . . scaffold1201 WUBlastX LTR_Gypsy 865 2172 379 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_RTE-X 264801 266828 284 - . . . . . -1 -1 -1 . . . scaffold194 WUBlastX RC_Helitron 244672 244812 37 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Ngaro 86470 86577 59 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Ngaro 86580 86963 231 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Ngaro 86960 87178 120 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 912002 912211 122 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_TcMar-Marin 839324 839716 202 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_TcMar-Marin 839894 840022 57 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_TcMar-Marin 840183 840560 160 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX DNA_Maverick 2572 2757 123 + . . . . . -1 -1 -1 . . . scaffold42348 WUBlastX LINE_RTE-X 101194 101268 27 - . . scaffold42348 GLEAN mRNA 96568 107151 0.643244 - . ID=CGI_10006683; scaffold867 WUBlastX LINE_I 490722 490925 22 - . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold789 WUBlastX LTR_Gypsy 307166 307903 152 + . . . . . -1 -1 -1 . . . scaffold36904 WUBlastX LINE_L2 26951 27760 345 - . . scaffold36904 GLEAN mRNA 10005 31731 0.991888 - . ID=CGI_10002168; scaffold43552 WUBlastX LTR_Gypsy 223501 224043 135 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold39592 WUBlastX LINE_L2 43735 44727 351 + . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LTR_Gypsy 240473 240748 32 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX DNA_Helitron 178593 178718 37 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_RTE-BovB 89365 89790 335 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_RTE-BovB 89795 90016 134 + . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LINE_RTE-X 407018 408136 399 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 862489 862953 165 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold144 WUBlastX LTR_Ngaro 633071 633940 350 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LTR_Ngaro 106260 106922 442 + . . . . . -1 -1 -1 . . . scaffold1822 WUBlastX DNA_Merlin 170634 171506 399 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_Maverick 558256 559248 447 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_DIRS 136813 137025 100 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1 6141 6449 43 + . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_RTE-X 287095 287172 32 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Gypsy 180701 181309 20 - . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LTR_DIRS 18680 19141 329 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_CR1 130246 130407 105 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold1017 WUBlastX LTR_Gypsy 628369 628893 371 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-X 1622119 1622640 120 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LINE_L1-Tx1 57789 57971 32 + . . . . . -1 -1 -1 . . . scaffold37430 WUBlastX LTR_Pao 42261 42371 25 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 158652 158819 31 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 51726 53015 368 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Gypsy 132834 133310 402 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_CR1 123729 125882 384 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Sola 313642 314280 210 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold351 WUBlastX DNA_Sola 314933 315085 108 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold347 WUBlastX LTR_Pao 596347 598155 500 - . . scaffold347 GLEAN mRNA 592653 598604 0.749141 + . ID=CGI_10021803; scaffold126 WUBlastX LTR_Gypsy 586897 587508 181 + . . . . . -1 -1 -1 . . . scaffold1881 WUBlastX LINE_RTE-X 136981 139134 426 + . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 11705 11797 72 - . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LINE_L2 137512 137652 26 - . . scaffold222 GLEAN mRNA 134195 141016 0.626444 - . ID=CGI_10007124; scaffold544 WUBlastX LTR_Gypsy 722201 725755 579 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy 729011 732565 579 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold1769 WUBlastX LTR_Gypsy 192110 192328 138 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 589593 589697 49 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_RTE-BovB 714322 714444 33 + . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LINE_RTE-BovB 714696 715832 418 + . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; C35068 WUBlastX DNA_hAT-Tip100 5680 6423 428 + . . C35068 GLEAN mRNA 2139 13943 0.995001 + . ID=CGI_10001414; C35068 WUBlastX DNA_hAT-Tip100 7296 7610 187 + . . C35068 GLEAN mRNA 2139 13943 0.995001 + . ID=CGI_10001414; scaffold479 WUBlastX LTR_Ngaro 86158 86448 176 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_Ngaro 86451 86630 66 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_Ngaro 86630 87454 278 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold1525 WUBlastX DNA_IS4EU 272186 272779 344 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_IS4EU 273617 273805 105 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Ngaro 64230 64505 175 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L1-Tx1 545798 546526 50 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_CR1 746077 746562 368 - . . scaffold583 GLEAN mRNA 741499 750992 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 746077 746562 368 - . . scaffold583 GLEAN mRNA 742000 755299 0.5 + . ID=CGI_10023644; scaffold1009 WUBlastX LTR_Pao 251705 253387 633 - . . scaffold1009 GLEAN mRNA 246787 271005 0.99497 - . ID=CGI_10028723; scaffold1213 WUBlastX LTR_Gypsy 1235841 1236407 340 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_RTE-X 130568 131029 80 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold1155 WUBlastX LINE_L2 91227 92147 670 - . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX LTR_Gypsy 168040 168201 52 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold1424 WUBlastX LTR_Gypsy 26693 26803 20 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_RTE-X 569646 570398 103 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Pao 200264 202597 735 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold577 WUBlastX DNA_Harbinger 182196 182564 383 + . . scaffold577 GLEAN mRNA 118575 184181 0.72743 - . ID=CGI_10009918; scaffold577 WUBlastX DNA_Harbinger 182642 183133 328 + . . scaffold577 GLEAN mRNA 118575 184181 0.72743 - . ID=CGI_10009918; C24994 WUBlastX LTR_Gypsy 3 1070 874 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 15400 16134 578 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_RTE-X 150127 150621 314 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_Gypsy-Cigr 674403 674768 182 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_L1-Tx1 177533 178195 27 + . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Pao 47636 47773 94 - . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Pao 50566 50772 88 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy-Cigr 85156 85758 194 - . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX LTR_Gypsy 169721 170158 226 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold1104 WUBlastX LINE_R2-Hero 427064 427306 57 + . . . . . -1 -1 -1 . . . scaffold314 WUBlastX LINE_Penelope 111803 113500 724 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 28948 31104 653 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 100565 101236 132 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Ngaro 8232 9203 673 - . . . . . -1 -1 -1 . . . scaffold592 WUBlastX DNA_Academ 18749 18910 27 + . . scaffold592 GLEAN mRNA 3363 19316 0.499918 + . ID=CGI_10010700; scaffold808 WUBlastX DNA_Chapaev 378228 378536 75 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX DNA_Chapaev 34231 34539 75 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Copia 820076 820129 20 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_L2 335569 335913 33 + . . . . . -1 -1 -1 . . . scaffold42040 WUBlastX LINE_CR1-L2 117254 117547 32 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_CR1-L2 156277 156516 40 + . . scaffold977 GLEAN mRNA 146070 167200 0.562252 - . ID=CGI_10017163; C29970 WUBlastX LINE_L2 5675 5896 56 - . . . . . -1 -1 -1 . . . scaffold38884 WUBlastX DNA?_Crypton? 49300 49533 57 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; C33482 WUBlastX LINE_CR1 3875 3976 37 + . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX LTR_DIRS 34809 34895 72 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy 98419 98613 53 - . . scaffold612 GLEAN mRNA 97858 98469 0.449004 - . ID=CGI_10009462; scaffold885 WUBlastX LTR_Gypsy 250104 250277 43 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Gypsy 633416 633532 20 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_hAT-Charlie 242445 242873 63 + . . scaffold772 GLEAN mRNA 238963 261048 0.714694 - . ID=CGI_10016587; C30768 WUBlastX DNA_IS4EU 7108 7248 23 + . . . . . -1 -1 -1 . . . C30768 WUBlastX DNA_IS4EU 8143 8328 53 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_IS4EU 1222899 1223114 50 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1397 WUBlastX DNA_IS4EU 171043 171186 22 + . . . . . -1 -1 -1 . . . scaffold37500 WUBlastX LTR_Gypsy 18299 18514 24 - . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold1030 WUBlastX DNA_Kolobok 20747 21013 43 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Jockey 1091505 1091813 52 - . . . . . -1 -1 -1 . . . scaffold33224 WUBlastX LINE_Penelope 252 443 37 - . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LINE_R2 73493 73852 87 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_Penelope 354878 355423 26 + . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX DNA_TcMar-Tc1 190268 190501 75 - . . scaffold43954 GLEAN mRNA 188330 194166 0.997744 + . ID=CGI_10014580; scaffold789 WUBlastX DNA_MuDR 372618 372863 66 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_MuDR 401284 401583 39 - . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold41442 WUBlastX LINE_RTE-BovB 12407 12751 42 - . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LINE_Penelope 120313 120624 20 + . . . . . -1 -1 -1 . . . scaffold1637 WUBlastX LTR_Gypsy 13563 14048 40 + . . scaffold1637 GLEAN mRNA 6795 17183 0.409292 + . ID=CGI_10010272; scaffold733 WUBlastX LINE_L2 651208 651375 73 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_TcMar-Marin 151111 151335 43 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_TcMar-Marin 151564 151647 23 + . . . . . -1 -1 -1 . . . scaffold718 WUBlastX DNA_TcMar-Fot1 205245 205709 69 + . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX DNA_TcMar-Marin 182362 182412 35 - . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX DNA_TcMar-Marin 182428 182649 48 - . . . . . -1 -1 -1 . . . scaffold36998 WUBlastX LINE_L1 37296 37700 28 + . . scaffold36998 GLEAN mRNA 37104 39058 0.558395 + . ID=CGI_10002247; scaffold43878 WUBlastX LINE_RTE-X 92887 93096 56 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_RTE-X 504688 504906 68 + . . . . . -1 -1 -1 . . . scaffold827 WUBlastX LINE_Proto2 48776 48997 65 - . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 29929 30165 78 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_Gypsy 452799 453017 46 - . . scaffold70 GLEAN mRNA 452424 453119 0.996819 - . ID=CGI_10024770; scaffold676 WUBlastX DNA_TcMar-Tc1 304328 304582 22 - . . . . . -1 -1 -1 . . . scaffold910 WUBlastX LINE_CR1-L2 21230 21298 25 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_CR1-L2 133104 133253 29 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_hAT-Tip100 466062 466400 78 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LTR_DIRS 70424 70669 100 + . . scaffold552 GLEAN mRNA 69612 73670 0.367121 + . ID=CGI_10009321; scaffold308 WUBlastX DNA_Harbinger 209143 209445 49 - . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_Harbinger 165448 165666 39 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX DNA_IS4EU 183339 183527 47 + . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold149 WUBlastX LINE_I 631655 632143 39 - . . . . . -1 -1 -1 . . . C34270 WUBlastX DNA_hAT-Blackja 7870 8055 30 + . . C34270 GLEAN mRNA 1937 17133 0.990126 - . ID=CGI_10001262; scaffold39134 WUBlastX RC_Helitron 54674 55141 43 - . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold1881 WUBlastX DNA_TcMar-Marin 54413 54616 61 + . . . . . -1 -1 -1 . . . scaffold388 WUBlastX DNA_TcMar-Marin 429503 429646 52 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LTR_Ngaro 429517 429600 28 + . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold672 WUBlastX LINE_RTE-BovB 129733 130164 48 + . . scaffold672 GLEAN mRNA 126321 133472 0.990434 + . ID=CGI_10021024; C26486 WUBlastX LINE_Penelope 3415 3678 50 - . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LINE_Penelope 300387 300509 39 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LINE_RTE-X 18633 18821 50 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LINE_RTE-X 140049 140285 53 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-X 818135 818362 30 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_RTE-X 286548 286808 76 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-X 864199 864489 21 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_RTE-X 226974 227282 57 - . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX LINE_RTE-X 284803 284961 58 - . . . . . -1 -1 -1 . . . scaffold40106 WUBlastX LINE_RTE-X 51049 51279 72 - . . scaffold40106 GLEAN mRNA 43451 51495 0.999465 - . ID=CGI_10003856; scaffold1882 WUBlastX DNA_Sola 59432 59710 64 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_Rex-Babar 410936 411673 24 - . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_L2 337570 337902 70 - . . scaffold1409 GLEAN mRNA 329296 337932 0.994281 + . ID=CGI_10013793; scaffold1409 WUBlastX LINE_L2 337570 337902 70 - . . scaffold1409 GLEAN mRNA 324495 351305 0.918932 - . ID=CGI_10013791; scaffold1050 WUBlastX LINE_L2 115644 115997 96 + . . scaffold1050 GLEAN mRNA 110488 131637 0.740819 + . ID=CGI_10009172; scaffold43076 WUBlastX LTR_DIRS 56743 57219 63 + . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Gypsy 29405 30301 47 + . . scaffold41242 GLEAN mRNA 28835 29434 0.478775 + . ID=CGI_10004880; scaffold41242 WUBlastX LTR_Gypsy 29405 30301 47 + . . scaffold41242 GLEAN mRNA 29519 30064 0.480836 + . ID=CGI_10004881; scaffold41242 WUBlastX LTR_Gypsy 29405 30301 47 + . . scaffold41242 GLEAN mRNA 30075 30290 0.999372 + . ID=CGI_10004882; scaffold38532 WUBlastX LTR_Gypsy 7632 7736 21 + . . . . . -1 -1 -1 . . . scaffold1333 WUBlastX LTR_ERV1 56872 56934 23 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold43 WUBlastX LTR_Gypsy 424929 425312 78 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX RC_Helitron 122079 122267 122 + . . . . . -1 -1 -1 . . . scaffold1477 WUBlastX DNA_IS4EU 40929 41069 22 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX DNA_MuDR 479784 480638 34 + . . scaffold335 GLEAN mRNA 469736 479813 0.288148 + . ID=CGI_10017112; scaffold22 WUBlastX LINE_I 783166 783219 23 + . . . . . -1 -1 -1 . . . scaffold1227 WUBlastX DNA_Kolobok-Hyd 210463 211035 43 + . . scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; C26236 WUBlastX LINE_L1 889 1608 45 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1 175617 175757 21 - . . . . . -1 -1 -1 . . . scaffold941 WUBlastX LINE_L1-Tx1 22578 22622 25 + . . . . . -1 -1 -1 . . . C26070 WUBlastX LINE_RTE-X 127 534 41 + . . . . . -1 -1 -1 . . . scaffold1002 WUBlastX LINE_RTE-X 67597 67758 95 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 81426 81809 92 - . . . . . -1 -1 -1 . . . scaffold32488 WUBlastX LINE_R2 90 191 26 - . . . . . -1 -1 -1 . . . scaffold41064 WUBlastX DNA_Sola 97976 98155 50 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1 1269810 1269941 22 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold42704 WUBlastX LINE_L2-Hydra 90710 90838 32 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_L2 411625 411837 79 + . . scaffold751 GLEAN mRNA 408046 415763 1 - . ID=CGI_10017403; scaffold962 WUBlastX LTR_Gypsy-Cigr 17865 18047 87 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_En-Spm 224676 226007 20 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 197595 197837 67 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_IS4EU 458725 459183 106 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_Harbinger 285873 286358 102 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX DNA_Harbinger 177758 178126 89 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 665462 665587 50 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold43844 WUBlastX LTR_Gypsy 317783 318289 82 - . . . . . -1 -1 -1 . . . scaffold35712 WUBlastX LINE_L1 8249 8287 22 + . . scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold35574 WUBlastX LINE_L1 3469 3693 49 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LINE_Penelope 49679 49852 80 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_Penelope 482237 482749 23 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Pao 12092 12412 44 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_L2 245000 245044 21 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 195161 195373 31 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX DNA_Harbinger 41054 41290 103 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_Penelope 488545 489135 58 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_MuDR 551857 552282 68 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; C30872 WUBlastX DNA_TcMar-Marin 4463 4636 114 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_TcMar-Marin 704607 704855 82 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_TcMar-Marin 111409 111600 23 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold433 WUBlastX LINE_L1 736297 736728 72 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 139943 140296 85 - . . scaffold48 GLEAN mRNA 124474 140752 0.924637 + . ID=CGI_10023885; scaffold1404 WUBlastX LINE_RTE-BovB 76890 76988 51 + . . . . . -1 -1 -1 . . . scaffold1404 WUBlastX LINE_RTE-BovB 77084 77203 32 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-BovB 720260 720610 94 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX DNA_TcMar-Marin 37996 38274 73 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_PiggyBac 419756 420022 98 - . . . . . -1 -1 -1 . . . scaffold868 WUBlastX LTR_Gypsy-Cigr 148539 148679 149 - . . . . . -1 -1 -1 . . . scaffold40564 WUBlastX LINE_L1 8342 8851 34 + . . scaffold40564 GLEAN mRNA 6674 28756 0.488599 + . ID=CGI_10004207; scaffold36898 WUBlastX LTR_Pao 709 810 112 + . . scaffold36898 GLEAN mRNA 700 1422 0.573259 - . ID=CGI_10002175; scaffold31382 WUBlastX LTR_Pao 6178 6279 112 + . . scaffold31382 GLEAN mRNA 6169 6891 0.573096 - . ID=CGI_10000732; scaffold162 WUBlastX LINE_CR1-L2 303527 303802 117 + . . . . . -1 -1 -1 . . . scaffold1349 WUBlastX LINE_CR1-L2 101342 101686 96 + . . scaffold1349 GLEAN mRNA 98417 106130 0.988431 - . ID=CGI_10009938; scaffold664 WUBlastX LTR_Ngaro 300912 301301 107 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LTR_Gypsy 120190 120621 106 + . . . . . -1 -1 -1 . . . scaffold685 WUBlastX LTR_Gypsy 79927 80280 116 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_Gypsy 240081 240335 145 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold36598 WUBlastX DNA_IS4EU 12892 13779 61 - . . scaffold36598 GLEAN mRNA 10870 17380 0.999993 + . ID=CGI_10002012; scaffold406 WUBlastX DNA_IS4EU 452386 452520 61 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX DNA_hAT-Tip100 633028 633525 61 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 399234 399581 25 - . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LINE_RTE-BovB 121592 121864 46 + . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_RTE-X 42034 42564 55 - . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LINE_RTE-X 109683 110138 79 + . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold433 WUBlastX LINE_RTE-X 283536 283817 95 - . . . . . -1 -1 -1 . . . C33654 WUBlastX LINE_RTE-X 11885 12190 66 + . . C33654 GLEAN mRNA 2501 14319 0.999996 + . ID=CGI_10001111; scaffold602 WUBlastX LINE_L1-Tx1 83265 83585 65 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_TcMar-Tc2 41820 42467 119 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_CR1 245203 245595 100 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L2 1184022 1184537 102 + . . . . . -1 -1 -1 . . . C29290 WUBlastX LTR_DIRS 3479 3736 107 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 591242 591565 94 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 25513 25593 21 + . . scaffold156 GLEAN mRNA 14763 25823 0.782343 + . ID=CGI_10026471; scaffold1217 WUBlastX LINE_I 123280 123342 24 + . . . . . -1 -1 -1 . . . scaffold652 WUBlastX LINE_L1-Tx1 1821 2288 63 + . . . . . -1 -1 -1 . . . scaffold296 WUBlastX LTR_Ngaro 116787 117230 105 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_Penelope 128421 129014 63 + . . scaffold1589 GLEAN mRNA 111686 137363 0.668529 + . ID=CGI_10024108; scaffold987 WUBlastX LINE_RTE-X 18241 18444 111 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 48257 48544 74 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_DIRS 195908 196357 91 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_CR1-L2 115494 115688 33 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L2 615782 616231 126 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Ngaro 334073 334357 116 + . . scaffold304 GLEAN mRNA 327782 339627 0.999019 - . ID=CGI_10016567; scaffold1836 WUBlastX LINE_I 33870 34793 105 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LTR_Gypsy 37556 38494 68 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX DNA_Kolobok 187434 187649 36 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_L1-Tx1 335072 335674 103 - . . scaffold152 GLEAN mRNA 326766 349856 0.295405 + . ID=CGI_10014899; scaffold1532 WUBlastX LINE_RTE-X 1675900 1676049 22 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_Gypsy-Troyk 452054 452149 37 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold911 WUBlastX LINE_CR1-L2 181279 181626 110 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_CR1-L2 58354 58779 110 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 767111 767392 24 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_DIRS 157830 157883 20 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 1317717 1317779 26 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1317781 1318104 102 - . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold1532 WUBlastX DNA_Kolobok-IS4 397397 397744 94 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold541 WUBlastX LINE_Penelope 369403 369783 106 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 133712 134035 87 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-X 591463 591603 65 + . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_CR1-L2 125849 126718 60 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy-Cigr 283939 284211 173 + . . . . . -1 -1 -1 . . . C32270 WUBlastX DNA_Crypton 664 993 69 - . . . . . -1 -1 -1 . . . C32270 WUBlastX DNA_Crypton 1364 1960 57 - . . . . . -1 -1 -1 . . . scaffold34302 WUBlastX DNA_Kolobok-IS4 13593 13787 82 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_IS4EU 596450 597055 66 + . . . . . -1 -1 -1 . . . scaffold32550 WUBlastX LINE_RTE-X 6934 7224 59 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_RTE-X 408562 409332 165 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 83827 83970 90 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 83976 84266 36 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 84236 84520 113 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 84537 84824 70 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 85576 86091 341 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 86094 86813 186 + . . . . . -1 -1 -1 . . . scaffold41628 WUBlastX LTR_Gypsy 163 1863 968 - . . . . . -1 -1 -1 . . . scaffold34894 WUBlastX LINE_Penelope 14491 16152 798 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 153385 154602 805 + . . . . . -1 -1 -1 . . . C26320 WUBlastX LTR_Copia 172 648 34 + . . . . . -1 -1 -1 . . . scaffold587 WUBlastX DNA_TcMar-ISRm1 2789 3472 104 + . . scaffold587 GLEAN mRNA 1966 7737 0.999375 - . ID=CGI_10006887; scaffold789 WUBlastX DNA_TcMar-ISRm1 348501 349307 131 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2 48519 48668 33 + . . . . . -1 -1 -1 . . . scaffold38058 WUBlastX LTR_Gypsy 4666 5133 67 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold498 WUBlastX LTR_Gypsy 50274 50726 157 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 257988 258431 149 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_L2 149823 150161 93 - . . scaffold780 GLEAN mRNA 138989 166483 0.986281 + . ID=CGI_10024719; scaffold601 WUBlastX LINE_Penelope 936153 936533 128 - . . . . . -1 -1 -1 . . . C22570 WUBlastX LINE_L1 2 361 114 - . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LINE_RTE-X 357827 358039 90 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold39966 WUBlastX LINE_RTE-BovB 76141 76782 110 - . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 1177 1314 52 - . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 2233 2322 21 - . . . . . -1 -1 -1 . . . scaffold1495 WUBlastX LINE_RTE-X 531 3158 819 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Tip100 411036 412295 546 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Tip100 412298 412885 279 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 366380 366718 92 + . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy 64351 66273 1003 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1123 WUBlastX LTR_Ngaro 265928 266143 98 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 536997 539582 712 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 602315 602719 129 + . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 41279 41869 169 - . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 50963 51553 169 + . . scaffold39096 GLEAN mRNA 50582 58209 0.813277 + . ID=CGI_10003149; scaffold958 WUBlastX LTR_Ngaro 310 702 113 - . . . . . -1 -1 -1 . . . C31366 WUBlastX DNA_Academ 1807 2079 87 - . . C31366 GLEAN mRNA 393 6299 0.999547 - . ID=CGI_10000739; scaffold43552 WUBlastX DNA_Academ 259362 259631 70 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX RC_Helitron 19198 19695 181 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_Kolobok 54859 55020 89 + . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold140 WUBlastX LINE_RTE-X 95626 95973 49 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-BovB 2774 3064 89 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-X 219584 219646 32 - . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX DNA_Zator 7739 8734 131 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold40988 WUBlastX LTR_Pao 31939 32091 85 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Pao 34782 35315 297 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 5682 7250 948 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-X 23335 24765 944 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold20 WUBlastX LINE_L1-Tx1 496552 497049 231 + . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 15889 16188 230 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 277595 277735 30 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_L1-Tx1 145355 147283 650 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold40076 WUBlastX LTR_Gypsy-Cigr 62600 62827 89 + . . scaffold40076 GLEAN mRNA 50026 69256 0.72657 + . ID=CGI_10003787; scaffold40584 WUBlastX LINE_CR1 58430 58894 133 + . . scaffold40584 GLEAN mRNA 39320 59449 0.702301 + . ID=CGI_10004249; scaffold42392 WUBlastX LTR_Gypsy 147606 148058 170 - . . scaffold42392 GLEAN mRNA 146946 151067 0.782062 + . ID=CGI_10006786; scaffold1066 WUBlastX LTR_Gypsy 251817 252308 154 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_Harbinger 671008 671142 42 + . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_Harbinger 159320 159562 51 - . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX LINE_RTE-BovB 246241 246798 126 + . . scaffold43574 GLEAN mRNA 246020 254223 1 - . ID=CGI_10010884; scaffold601 WUBlastX LINE_RTE-X 834209 834331 67 + . . scaffold601 GLEAN mRNA 814190 834629 0.512568 + . ID=CGI_10026849; scaffold678 WUBlastX LTR_Ngaro 89942 90610 41 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold401 WUBlastX LINE_RTE-X 156159 156374 102 - . . scaffold401 GLEAN mRNA 151217 157765 0.728444 + . ID=CGI_10006994; scaffold40786 WUBlastX LINE_RTE-X 20150 20698 78 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_Maverick 344318 345628 165 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LTR_DIRS 127988 128866 663 + . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LTR_DIRS 129339 129716 221 + . . . . . -1 -1 -1 . . . C31300 WUBlastX LTR_Gypsy-Cigr 7729 8283 245 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 1185469 1186074 76 + . . . . . -1 -1 -1 . . . scaffold42166 WUBlastX LINE_L2 11292 11348 22 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L2 614791 614886 22 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 32075 32515 178 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold1633 WUBlastX DNA_Harbinger 288884 289132 25 - . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LINE_RTE-X 75733 75993 28 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold751 WUBlastX LINE_RTE-X 246410 246955 104 + . . scaffold751 GLEAN mRNA 235635 247422 0.327254 - . ID=CGI_10017389; scaffold41064 WUBlastX DNA_Sola 98015 98155 75 + . . . . . -1 -1 -1 . . . scaffold41064 WUBlastX DNA_Sola 98731 98952 121 + . . . . . -1 -1 -1 . . . C32532 WUBlastX LINE_L1-Tx1 2 337 167 - . . . . . -1 -1 -1 . . . C24346 WUBlastX LINE_L1-Tx1 66 2069 799 + . . . . . -1 -1 -1 . . . scaffold1592 WUBlastX LINE_RTE-BovB 117888 118118 86 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1224488 1225333 404 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1225834 1226313 430 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_L2 316428 316733 62 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 317070 318479 427 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 318302 318766 239 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 318970 319449 148 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 319454 319960 128 - . . scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold1670 WUBlastX LINE_CR1 404065 404610 160 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold11 WUBlastX LINE_CR1-L2 26975 27217 29 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_Crypton 99551 100135 87 - . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LTR_Gypsy 91733 91945 124 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX DNA_TcMar-Fot1 211397 211804 152 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_Maverick 561733 562068 127 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_Maverick 324985 325488 144 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 743856 744032 92 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 744032 744214 125 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 826301 826570 99 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_L2 76199 76438 35 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_CR1-L2 51138 51374 28 + . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LTR_Pao 28779 29153 53 + . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LTR_Ngaro 174635 174883 30 - . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX DNA_IS4EU 40369 40584 34 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Penelope 181033 181755 53 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX DNA_TcMar-Tc1 252374 253243 185 - . . scaffold109 GLEAN mRNA 221861 297851 0.997753 - . ID=CGI_10022112; scaffold1579 WUBlastX LINE_L1 324997 325464 39 + . . scaffold1579 GLEAN mRNA 320598 331843 0.999956 + . ID=CGI_10016869; scaffold1783 WUBlastX LINE_L1 25163 25813 189 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_L1 241207 241857 189 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-X 331083 331661 108 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 105449 105649 132 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 88604 88663 26 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1322 WUBlastX LTR_Ngaro 588850 589128 49 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold1817 WUBlastX LTR_Ngaro 88355 88726 198 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Jockey 377880 377957 20 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_Harbinger 310814 310972 94 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold41898 WUBlastX LTR_Gypsy 101496 102053 156 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX DNA_Kolobok 898456 898650 35 - . . scaffold392 GLEAN mRNA 896113 900283 0.782453 - . ID=CGI_10024239; scaffold38306 WUBlastX LINE_L1-Tx1 7256 7525 192 + . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold311 WUBlastX LINE_RTE-X 7105 7245 31 - . . . . . -1 -1 -1 . . . scaffold311 WUBlastX LINE_RTE-X 7355 7450 27 - . . . . . -1 -1 -1 . . . scaffold42804 WUBlastX LINE_Jockey 184296 185864 88 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L2 313351 315762 1402 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold1317 WUBlastX LTR_Pao 71925 72539 197 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 72527 72646 65 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 727766 727912 75 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 730693 731823 172 - . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LTR_Ngaro 144939 145172 49 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Harbinger 303471 303734 200 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 13041 13160 21 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-X 152252 152584 118 + . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_L1 126605 127189 64 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 92433 92585 101 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L1 266737 267810 146 - . . . . . -1 -1 -1 . . . scaffold992 WUBlastX DNA_Sola 23730 24197 194 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Gypsy 249134 249259 36 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-X 210432 211040 199 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Pao 53569 54402 454 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1 544174 544389 78 - . . . . . -1 -1 -1 . . . scaffold30818 WUBlastX LTR_Gypsy 6505 6936 248 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 370843 371016 83 - . . . . . -1 -1 -1 . . . scaffold837 WUBlastX DNA_TcMar-Tc1 21107 21235 80 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LTR_Gypsy 354155 355540 942 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LTR_Gypsy 355537 355950 138 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LTR_Gypsy 355938 356513 293 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_L2 190410 191393 71 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LINE_L2 352680 353084 247 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy-Cigr 609263 609472 155 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_R2-Hero 188053 188451 96 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX DNA_IS4EU 525979 526422 182 - . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_IS4EU 525979 526422 182 - . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold976 WUBlastX DNA_TcMar-Tc1 38334 38708 52 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_CR1 52869 53639 196 + . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L1 827302 827403 61 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L2 240611 240823 141 + . . . . . -1 -1 -1 . . . scaffold38498 WUBlastX LTR_Ngaro 36020 36907 139 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Ngaro 1518351 1519049 199 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_L1 402861 403520 227 + . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LINE_L1 136617 137105 249 + . . . . . -1 -1 -1 . . . scaffold1191 WUBlastX LTR_DIRS 84999 85310 238 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold715 WUBlastX LTR_Gypsy 64624 64734 73 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 100515 100664 28 - . . . . . -1 -1 -1 . . . scaffold1573 WUBlastX LINE_RTE-X 38033 38299 28 - . . . . . -1 -1 -1 . . . scaffold1573 WUBlastX LINE_RTE-X 38530 38838 71 - . . . . . -1 -1 -1 . . . scaffold32550 WUBlastX LINE_RTE-X 6228 6989 86 - . . . . . -1 -1 -1 . . . scaffold32550 WUBlastX LINE_RTE-X 7247 7435 32 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_CR1 139429 139518 30 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_hAT-Tip100 6482 8131 265 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold37944 WUBlastX LTR_Gypsy 44244 44369 31 - . . . . . -1 -1 -1 . . . C34552 WUBlastX DNA_IS4EU 12082 13455 196 + . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX DNA_Harbinger 147944 148312 118 + . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX DNA_Harbinger 148912 149031 133 + . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LTR_Gypsy 51377 51490 20 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1 394845 395279 235 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1-Tx1 144744 145160 150 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX LINE_RTE-X 22894 23619 209 + . . scaffold459 GLEAN mRNA 19846 31339 0.918956 - . ID=CGI_10018165; scaffold459 WUBlastX LINE_RTE-X 22894 23619 209 + . . scaffold459 GLEAN mRNA 19774 37824 0.650564 + . ID=CGI_10018164; scaffold1632 WUBlastX LINE_RTE-X 52041 52823 222 - . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LTR_DIRS 69379 69918 186 - . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LTR_DIRS 70176 70313 23 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L1-Tx1 257567 261376 1928 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Gypsy 370226 370495 92 - . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1 45462 45623 33 - . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1 148406 148570 68 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_Penelope 140151 140684 175 - . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_RTE-X 1172 1396 114 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_TcMar-Tc1 404565 404864 155 + . . scaffold1402 GLEAN mRNA 402740 419521 0.863535 + . ID=CGI_10017593; scaffold3 WUBlastX LTR_Gypsy 515476 516498 60 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L2 23552 24169 54 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 179918 180010 59 - . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_IS4EU 7731 8090 178 - . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_IS4EU 8089 8328 149 - . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_L1-Tx1 11873 12490 53 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 92316 93119 178 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Ngaro 148500 148751 47 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-BovB 161926 162528 303 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX DNA_TcMar-Tc1 380714 381088 87 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 202433 202915 187 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold833 WUBlastX DNA_Academ 463064 463465 118 - . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX LINE_CR1 90815 91180 163 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 311338 311820 183 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold1188 WUBlastX LINE_Penelope 164809 165408 205 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LINE_Penelope 165395 165580 73 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold40928 WUBlastX LINE_CR1 40607 40849 65 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold425 WUBlastX DNA_Kolobok-IS4 128047 128514 141 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold41242 WUBlastX LINE_L1-Tx1 99802 100092 40 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold38978 WUBlastX LTR_Gypsy-Cigr 62706 62876 130 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy-Cigr 62869 63438 261 - . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Harbinger 33576 33920 126 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 590346 591305 265 + . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LTR_Gypsy 48839 48904 23 + . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LTR_DIRS 41529 42305 221 + . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LTR_DIRS 42322 42453 82 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 528639 528854 21 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 620420 620839 107 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX DNA_TcMar-Tc1 256668 257072 120 - . . scaffold914 GLEAN mRNA 255125 272585 0.997448 + . ID=CGI_10018883; scaffold257 WUBlastX DNA_TcMar-Tc1 362269 362484 79 - . . . . . -1 -1 -1 . . . scaffold40938 WUBlastX LINE_L1 5186 5500 81 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 708612 708857 64 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1-Tx1 188771 188908 31 - . . . . . -1 -1 -1 . . . C32150 WUBlastX LTR_Gypsy 2442 3239 401 + . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 55308 55670 104 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX DNA_Kolobok-IS4 155792 156529 371 + . . scaffold513 GLEAN mRNA 149609 156857 0.819622 - . ID=CGI_10022138; scaffold541 WUBlastX LINE_RTE-X 360250 360639 77 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 362422 362577 31 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_Sola 306606 306716 52 - . . . . . -1 -1 -1 . . . C32674 WUBlastX DNA_TcMar-Tc1 441 1172 267 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Pao 166025 166081 20 - . . . . . -1 -1 -1 . . . scaffold34282 WUBlastX LINE_RTE-X 15027 16337 304 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 648781 649170 289 + . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1825 WUBlastX LINE_RTE-X 229944 230459 136 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_RTE-X 230558 231643 113 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 444959 446434 430 - . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LINE_L1 14306 14344 20 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 121740 122105 144 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_RTE-X 271106 271942 84 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_RTE-X 272040 272447 213 - . . . . . -1 -1 -1 . . . scaffold35874 WUBlastX DNA_TcMar-Tc1 22460 22675 91 + . . . . . -1 -1 -1 . . . scaffold35874 WUBlastX DNA_TcMar-Tc1 22687 23106 208 + . . . . . -1 -1 -1 . . . scaffold35874 WUBlastX DNA_TcMar-Tc1 23567 23650 30 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LINE_L2 483761 484564 175 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LINE_L2 484776 484910 80 - . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX LTR_Ngaro 73155 73568 200 - . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX LTR_Ngaro 73730 74194 203 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LTR_Gypsy 169280 169369 22 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 567605 567796 38 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_TcMar-Tc1 46158 47192 320 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_TcMar-Tc1 268580 269611 374 - . . scaffold733 GLEAN mRNA 240072 273270 0.998744 + . ID=CGI_10025870; scaffold831 WUBlastX DNA_TcMar-Tc1 56418 57431 395 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L1-Tx1 138999 139082 35 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LTR_Ngaro 77720 77968 146 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_RTE-X 190606 190935 108 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_RTE-X 192100 192252 46 + . . . . . -1 -1 -1 . . . scaffold42364 WUBlastX LINE_CR1-L2 73859 74110 36 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_CR1-L2 74590 76053 189 - . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold40264 WUBlastX LINE_RTE-X 49754 51316 413 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold546 WUBlastX LINE_RTE-X 310985 311419 234 + . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_L2 3401 3538 40 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LINE_CR1-L2 401581 401781 35 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Pao 303027 304163 543 - . . . . . -1 -1 -1 . . . scaffold752 WUBlastX LTR_Gypsy 227352 228473 423 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 500018 500350 24 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 539631 539822 26 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 147610 149010 398 - . . . . . -1 -1 -1 . . . scaffold1501 WUBlastX DNA_hAT-Tip100 6686 7378 81 - . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LINE_L2 89110 89442 72 - . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LINE_L2 89512 89682 120 - . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LINE_L2 89684 90157 303 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_R2-Hero 291796 292041 98 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 158678 159775 484 - . . . . . -1 -1 -1 . . . scaffold42836 WUBlastX LINE_RTE-X 167153 168379 392 + . . scaffold42836 GLEAN mRNA 143632 181424 1 + . ID=CGI_10007862; scaffold237 WUBlastX DNA_TcMar-Tc1 474597 475547 504 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 479049 479135 36 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold1448 WUBlastX LINE_CR1-L2 275302 275385 33 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_CR1-L2 276883 277041 30 - . . . . . -1 -1 -1 . . . scaffold39976 WUBlastX LTR_Pao 45054 45950 223 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 302378 302944 169 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_TcMar-Marin 211520 211924 229 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_TcMar-Marin 212393 212773 162 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Gypsy 446736 447269 459 - . . . . . -1 -1 -1 . . . scaffold42166 WUBlastX LINE_RTE-X 10050 10523 168 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_DIRS 487027 487224 83 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 102650 103279 51 + . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LTR_Gypsy 49013 49435 189 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold377 WUBlastX DNA_Maverick 8877 9011 34 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 11404 11658 113 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LTR_DIRS 109982 110929 565 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 268712 268933 100 + . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX DNA_hAT 11905 12012 71 - . . scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold621 WUBlastX LINE_CR1 438157 439302 622 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Ngaro 60847 61701 199 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LTR_Gypsy 40627 40653 23 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 127078 127536 245 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 264656 265000 67 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 265766 266374 286 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 266733 266864 94 - . . . . . -1 -1 -1 . . . scaffold1261 WUBlastX LINE_L1-Tx1 19957 21465 399 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Gypsy 208923 209360 256 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Gypsy 442376 443275 710 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 848148 849506 245 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy-Cigr 28043 29659 721 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 140027 140563 257 - . . . . . -1 -1 -1 . . . scaffold30314 WUBlastX LINE_RTE-X 2632 3453 403 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Gypsy-Cigr 41451 42443 524 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy-Cigr 42410 42889 209 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold94 WUBlastX LTR_Gypsy 66488 66799 121 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold1780 WUBlastX LTR_Gypsy 135759 136421 44 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_CR1-L2 66804 67127 62 - . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX DNA_MuDR 106829 108034 377 - . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX DNA_MuDR 108075 108521 178 - . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX DNA_MuDR 108473 108913 29 - . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold321 WUBlastX LTR_Gypsy 637821 637979 21 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Gypsy 194008 194847 132 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold1104 WUBlastX LINE_R2-Hero 427144 427665 105 + . . scaffold1104 GLEAN mRNA 427462 427692 0.999372 + . ID=CGI_10020385; scaffold335 WUBlastX LTR_Gypsy 127446 127787 51 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-BovB 160062 160166 39 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-BovB 160185 160451 126 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-BovB 160400 161257 257 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-BovB 161260 161565 217 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-BovB 161586 161792 115 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy-Cigr 436748 437293 515 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 820608 820640 31 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 87732 88028 115 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX DNA_Maverick 11850 12737 406 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX DNA_Maverick 13146 13319 106 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 13403 13714 144 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 13717 14328 88 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 14386 15114 26 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold322 WUBlastX LINE_CR1-L2 217016 217234 24 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy 58261 58503 96 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LTR_Gypsy 26077 27183 312 - . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_L1 41037 41600 177 + . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LINE_L1-Tx1 36467 36559 48 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 319979 320311 70 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 320968 321594 239 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 349956 351860 671 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy-Cigr 300724 301155 208 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy-Cigr 301679 302263 248 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_TcMar-Marin 87952 88245 26 - . . scaffold714 GLEAN mRNA 72326 94511 0.727136 + . ID=CGI_10016640; scaffold670 WUBlastX LTR_Copia 58951 59172 54 + . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_L2 17348 17644 52 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L2 1210962 1211111 86 + . . scaffold501 GLEAN mRNA 1202814 1224035 0.789617 + . ID=CGI_10027546; scaffold457 WUBlastX LINE_CR1-L2 157249 157521 69 - . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_Rex-Babar 298001 298309 47 + . . scaffold1877 GLEAN mRNA 295978 306967 1 + . ID=CGI_10011963; scaffold43358 WUBlastX LINE_CR1 40357 40653 75 - . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_Gypsy 27568 28101 60 + . . . . . -1 -1 -1 . . . scaffold1058 WUBlastX LTR_Gypsy 42256 42516 68 - . . . . . -1 -1 -1 . . . scaffold837 WUBlastX LTR_Gypsy 7115 7342 62 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LTR_DIRS 201421 201636 27 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_L2 30294 30389 22 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Gypsy 34852 35052 50 - . . . . . -1 -1 -1 . . . scaffold1499 WUBlastX LTR_Gypsy 4107 4277 22 - . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LINE_L1 313240 313758 46 + . . scaffold723 GLEAN mRNA 313507 313764 0.481188 + . ID=CGI_10015269; scaffold1820 WUBlastX DNA_IS4EU 10438 10632 21 - . . scaffold1820 GLEAN mRNA 4378 12719 0.840322 + . ID=CGI_10002445; scaffold578 WUBlastX DNA_TcMar-Marin 368631 368837 39 - . . . . . -1 -1 -1 . . . scaffold578 WUBlastX DNA_TcMar-Marin 369053 369187 21 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_Kolobok-IS4 907395 907442 24 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Kolobok-IS4 1121710 1122072 56 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L1 3071 3406 28 + . . scaffold1017 GLEAN mRNA 2075 8937 1 - . ID=CGI_10024977; scaffold323 WUBlastX DNA_Kolobok-Hyd 123085 123600 58 - . . scaffold323 GLEAN mRNA 122863 123402 0.649599 - . ID=CGI_10009779; scaffold1867 WUBlastX DNA_Kolobok-Hyd 106707 106868 21 + . . scaffold1867 GLEAN mRNA 102678 111179 0.989687 + . ID=CGI_10006446; scaffold1707 WUBlastX LINE_L1 196730 196837 39 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_MuDR 240685 240960 26 + . . scaffold99 GLEAN mRNA 235492 241625 0.649382 + . ID=CGI_10021195; scaffold99 WUBlastX DNA_MuDR 241548 241661 34 + . . scaffold99 GLEAN mRNA 235492 241625 0.649382 + . ID=CGI_10021195; C33864 WUBlastX LINE_Jockey 7549 7686 20 - . . C33864 GLEAN mRNA 4487 13917 0.999834 - . ID=CGI_10001156; scaffold1024 WUBlastX LINE_CR1 896943 897038 24 - . . scaffold1024 GLEAN mRNA 896685 896963 0.999372 - . ID=CGI_10028552; scaffold43574 WUBlastX LINE_L1 276030 276143 74 - . . . . . -1 -1 -1 . . . scaffold1286 WUBlastX LINE_L2 4242 4367 29 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold20 WUBlastX DNA_TcMar-Pogo 86062 86337 45 - . . scaffold20 GLEAN mRNA 85901 95584 0.999992 + . ID=CGI_10023562; scaffold549 WUBlastX LINE_RTE-X 8122 8202 36 - . . scaffold549 GLEAN mRNA 463 9456 0.999993 + . ID=CGI_10004100; scaffold733 WUBlastX LTR_Gypsy 1020370 1020414 26 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LINE_RTE-X 18053 18274 39 - . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX LINE_RTE-X 524 667 63 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-X 1244784 1245041 33 + . . scaffold1301 GLEAN mRNA 1240763 1263950 0.99974 - . ID=CGI_10027768; scaffold793 WUBlastX LINE_RTE-X 263561 263713 65 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Sola 337700 337840 48 - . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LINE_L1-Tx1 88494 88589 26 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold41928 WUBlastX DNA_Zator 35796 36233 42 + . . scaffold41928 GLEAN mRNA 28917 39705 0.734554 - . ID=CGI_10005836; scaffold1462 WUBlastX LINE_CR1-L2 1457 1597 32 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_CR1-L2 3252 3377 49 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L2 549218 549793 48 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX DNA_Crypton 427140 427637 28 + . . scaffold210 GLEAN mRNA 426681 440258 0.999993 - . ID=CGI_10015907; scaffold1374 WUBlastX LTR_Gypsy 7493 7717 61 + . . . . . -1 -1 -1 . . . scaffold39598 WUBlastX LTR_Gypsy 1614 1838 61 - . . . . . -1 -1 -1 . . . C34116 WUBlastX LTR_Gypsy 2302 2520 79 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 348909 349184 78 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 125832 126557 63 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX RC_Helitron 221739 221831 32 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 222795 222857 37 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold42770 WUBlastX DNA_Harbinger 53254 53331 22 + . . scaffold42770 GLEAN mRNA 53297 53668 0.618185 + . ID=CGI_10007689; scaffold42770 WUBlastX DNA_Harbinger 53294 53908 24 + . . scaffold42770 GLEAN mRNA 53297 53668 0.618185 + . ID=CGI_10007689; scaffold148 WUBlastX DNA_Harbinger 76497 76580 45 + . . . . . -1 -1 -1 . . . scaffold1873 WUBlastX DNA_Harbinger 226671 226886 84 + . . . . . -1 -1 -1 . . . scaffold40406 WUBlastX DNA_Harbinger 37990 38238 81 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LTR_Gypsy 150782 151180 82 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_TcMar-Fot1 422201 422659 36 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LINE_Penelope 203171 203362 89 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L1 184729 184926 75 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 1194681 1194980 33 + . . . . . -1 -1 -1 . . . scaffold41948 WUBlastX LINE_RTE-X 3125 3592 25 + . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LINE_RTE-X 133739 133834 28 - . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_RTE-X 712430 712900 24 + . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_RTE-X 119701 119952 28 - . . scaffold44098 GLEAN mRNA 115382 139154 0.999935 - . ID=CGI_10017702; scaffold622 WUBlastX LINE_RTE-BovB 190826 191107 76 + . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 131872 132219 34 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LINE_RTE-X 233986 234471 41 - . . scaffold1743 GLEAN mRNA 225368 248286 0.742801 - . ID=CGI_10011658; scaffold695 WUBlastX DNA_Sola 681165 681380 39 + . . scaffold695 GLEAN mRNA 679649 687382 0.99962 - . ID=CGI_10023301; scaffold1382 WUBlastX LTR_Gypsy 253899 254138 64 - . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Pao 37690 37980 96 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Pao 48995 49030 20 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Pao 49292 49360 24 + . . . . . -1 -1 -1 . . . scaffold1233 WUBlastX LTR_Ngaro 7666 7947 66 - . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold1439 WUBlastX LTR_Ngaro 78800 79036 92 - . . . . . -1 -1 -1 . . . scaffold43344 WUBlastX LTR_Gypsy 231892 232176 23 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_Gypsy 161092 161433 69 - . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX RC_Helitron 542 691 30 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX RC_Helitron 54144 54431 119 - . . scaffold626 GLEAN mRNA 35526 64232 0.361303 - . ID=CGI_10019977; scaffold750 WUBlastX DNA_IS4EU 110096 110302 68 + . . scaffold750 GLEAN mRNA 95673 121067 0.651358 - . ID=CGI_10022212; scaffold317 WUBlastX DNA_Kolobok 206631 206939 33 - . . scaffold317 GLEAN mRNA 202383 206966 0.755515 - . ID=CGI_10019348; scaffold149 WUBlastX LINE_L1-Tx1 958976 959122 28 - . . scaffold149 GLEAN mRNA 948392 959761 0.932291 - . ID=CGI_10025333; scaffold1138 WUBlastX LINE_RTE-BovB 254481 254906 53 + . . . . . -1 -1 -1 . . . scaffold35538 WUBlastX LINE_RTE-X 20932 21357 20 - . . scaffold35538 GLEAN mRNA 14229 24935 0.828916 + . ID=CGI_10001559; scaffold733 WUBlastX DNA_Maverick 49242 49313 55 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 450308 450496 55 - . . . . . -1 -1 -1 . . . scaffold39320 WUBlastX LINE_RTE-X 42880 43137 53 - . . . . . -1 -1 -1 . . . scaffold33064 WUBlastX LINE_Jockey 7727 7795 22 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy-Troyk 6912 7067 81 + . . scaffold606 GLEAN mRNA 6984 7199 0.73346 + . ID=CGI_10012937; scaffold1746 WUBlastX LINE_L2 174631 175377 53 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_CR1 286294 286539 57 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_TcMar-Marin 384849 385406 83 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold40560 WUBlastX DNA_Harbinger 60566 60757 39 - . . scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold36732 WUBlastX DNA_Kolobok 4542 5102 68 - . . . . . -1 -1 -1 . . . C26584 WUBlastX LINE_L1 3589 4011 22 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX DNA_TcMar-Marin 383652 383774 42 - . . . . . -1 -1 -1 . . . scaffold144 WUBlastX DNA_TcMar-Marin 384070 384273 36 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 397719 397943 39 + . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LINE_RTE-X 203655 203918 59 + . . . . . -1 -1 -1 . . . scaffold35138 WUBlastX DNA_Sola 23323 23490 65 + . . scaffold35138 GLEAN mRNA 21236 24231 0.999675 + . ID=CGI_10001519; scaffold200 WUBlastX DNA_Sola 115841 116008 65 - . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L1-Tx1 6425 6538 32 + . . scaffold41344 GLEAN mRNA 6527 6937 1 + . ID=CGI_10004978; C29970 WUBlastX LINE_CR1-L2 5878 5952 48 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1153965 1154291 61 - . . . . . -1 -1 -1 . . . scaffold39120 WUBlastX LTR_Ngaro 45981 46208 102 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold1810 WUBlastX LTR_Ngaro 47407 47895 89 + . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_Ngaro 56511 56702 83 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold222 WUBlastX DNA_Harbinger 131659 132111 89 - . . . . . -1 -1 -1 . . . scaffold37794 WUBlastX DNA_hAT-Tip100 34767 34964 115 - . . scaffold37794 GLEAN mRNA 31174 37793 0.544852 + . ID=CGI_10002501; scaffold601 WUBlastX DNA_Kolobok-IS4 705660 705842 32 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_Kolobok-IS4 705868 706050 41 + . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LTR_Gypsy 88076 88264 118 + . . . . . -1 -1 -1 . . . scaffold316 WUBlastX LTR_Gypsy 16554 16790 49 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold313 WUBlastX LINE_RTE-X 134297 134557 77 + . . scaffold313 GLEAN mRNA 134319 135998 0.83601 - . ID=CGI_10026584; C34120 WUBlastX DNA_Sola 4577 4834 112 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX DNA_Sola 76391 76759 86 + . . scaffold723 GLEAN mRNA 67351 82227 0.542233 + . ID=CGI_10015256; scaffold211 WUBlastX DNA_Sola 1274697 1275065 83 + . . scaffold211 GLEAN mRNA 1267052 1275741 1 - . ID=CGI_10026994; scaffold36872 WUBlastX LINE_RTE-X 18645 18944 42 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1-Tx1 193967 194071 22 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 168404 168475 30 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1525 WUBlastX LTR_Pao 142972 143403 115 + . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Ngaro 13344 13730 125 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LTR_Ngaro 790666 791163 67 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LTR_Ngaro 965152 965664 45 + . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold591 WUBlastX LTR_Ngaro 552037 552153 42 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX LTR_Ngaro 46004 46303 51 - . . . . . -1 -1 -1 . . . scaffold675 WUBlastX DNA_TcMar-Marin 115406 115804 80 - . . scaffold675 GLEAN mRNA 109657 116904 0.999611 - . ID=CGI_10017856; scaffold698 WUBlastX LINE_L1 537439 537996 53 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L1-Tx1 1345982 1346284 114 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 476473 476937 46 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 453034 453384 96 - . . scaffold146 GLEAN mRNA 445752 454994 0.544479 - . ID=CGI_10024906; scaffold1475 WUBlastX LINE_RTE-X 91787 92119 65 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-BovB 232839 233090 74 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold41086 WUBlastX DNA_Maverick 72746 72943 52 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX DNA_Maverick 72914 73114 62 - . . . . . -1 -1 -1 . . . scaffold527 WUBlastX DNA_Maverick 267470 267664 108 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_TcMar-Tigge 259648 259755 63 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX DNA_Sola 29326 29385 32 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold507 WUBlastX DNA_Sola 29739 29858 107 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold1409 WUBlastX LINE_L1-Tx1 220971 221237 64 + . . . . . -1 -1 -1 . . . C26584 WUBlastX LINE_L1-Tx1 3790 3993 75 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_L1-Tx1 927429 927872 33 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258265 258327 35 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LTR_Pao 72810 72881 20 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_CR1-L2 578626 578877 26 + . . . . . -1 -1 -1 . . . scaffold1121 WUBlastX LINE_L2 23561 23662 48 - . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LTR_Ngaro 8763 8855 55 + . . scaffold1777 GLEAN mRNA 5363 10416 0.999547 + . ID=CGI_10003152; scaffold99 WUBlastX LTR_Ngaro 307661 308176 54 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Ngaro 117182 117922 59 + . . scaffold113 GLEAN mRNA 112752 117970 0.458528 + . ID=CGI_10021286; scaffold38952 WUBlastX LINE_Penelope 37904 38356 47 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_MuDR 345262 345474 74 - . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 471 791 47 - . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 1156 1272 38 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 284345 284776 69 + . . . . . -1 -1 -1 . . . scaffold42252 WUBlastX LINE_RTE-X 1326 1712 60 - . . . . . -1 -1 -1 . . . scaffold1366 WUBlastX LINE_RTE-X 140827 141117 91 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_RTE-X 495612 496154 107 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-X 896501 896773 103 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_RTE-X 287471 287743 90 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_TcMar-Tc1 722311 722520 35 + . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX LINE_L2 112386 112679 75 + . . scaffold1722 GLEAN mRNA 110785 118897 0.558395 + . ID=CGI_10014874; scaffold1722 WUBlastX LINE_L2 112386 112679 75 + . . scaffold1722 GLEAN mRNA 111167 115218 0.99733 - . ID=CGI_10014875; C26550 WUBlastX LTR_Ngaro 1699 1932 66 - . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX LTR_Gypsy 1302 1892 113 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX DNA_Kolobok-IS4 638093 638497 72 - . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold392 WUBlastX DNA_Kolobok 46125 46229 24 + . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold675 WUBlastX DNA_TcMar-Marin 15733 15966 111 - . . . . . -1 -1 -1 . . . scaffold675 WUBlastX DNA_TcMar-Marin 16091 16246 30 - . . . . . -1 -1 -1 . . . scaffold38898 WUBlastX DNA_Maverick 24132 24251 62 + . . . . . -1 -1 -1 . . . scaffold38898 WUBlastX DNA_Maverick 24296 24505 57 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_L1-Tx1 128195 128494 125 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LTR_Gypsy-Cigr 6662 7147 130 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LINE_L2 96534 97259 77 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 824509 825225 128 + . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Gypsy 331388 331576 155 - . . . . . -1 -1 -1 . . . scaffold161 WUBlastX LTR_DIRS 112465 112689 133 + . . scaffold161 GLEAN mRNA 106688 117037 0.832376 + . ID=CGI_10008589; scaffold1751 WUBlastX LTR_Gypsy 174784 175104 146 - . . . . . -1 -1 -1 . . . scaffold1751 WUBlastX LTR_Gypsy 175178 175279 38 - . . . . . -1 -1 -1 . . . scaffold39274 WUBlastX LINE_Penelope 21298 21750 36 - . . . . . -1 -1 -1 . . . scaffold39274 WUBlastX LINE_Penelope 21785 21907 27 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 501603 501671 25 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_RTE-X 725584 725922 96 - . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX LINE_RTE-X 29966 30292 96 - . . . . . -1 -1 -1 . . . scaffold42326 WUBlastX LINE_RTE-BovB 72088 72285 106 - . . scaffold42326 GLEAN mRNA 66289 74276 1 + . ID=CGI_10006692; scaffold1883 WUBlastX LINE_RTE-X 87275 87736 69 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L2 27660 27839 70 + . . . . . -1 -1 -1 . . . scaffold366 WUBlastX DNA_Harbinger 119074 119382 79 - . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold226 WUBlastX DNA_TcMar-Tc2 337521 337751 66 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX DNA_NOF 206842 207033 70 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 207395 208099 88 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold963 WUBlastX DNA_IS4EU 314104 314307 86 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX DNA_IS4EU 315346 315426 43 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1 694385 694612 29 - . . . . . -1 -1 -1 . . . scaffold43530 WUBlastX LINE_RTE-RTE 64741 65664 36 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 811798 812073 32 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_RTE-X 173901 174278 83 + . . . . . -1 -1 -1 . . . scaffold941 WUBlastX DNA_TcMar-Tc1 33496 34212 58 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 216335 216592 151 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 216580 216867 187 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 216837 217736 439 + . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LTR_DIRS 125672 127654 778 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Gypsy 30635 31549 712 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Gypsy 31725 32015 79 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LTR_Gypsy 140614 142515 1025 + . . . . . -1 -1 -1 . . . scaffold76 WUBlastX LTR_Gypsy 22068 23273 1023 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 726990 728552 946 - . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold610 WUBlastX LINE_RTE-X 610037 612703 699 - . . . . . -1 -1 -1 . . . scaffold41732 WUBlastX LINE_CR1-L2 124594 124929 149 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Pao 31237 31500 167 + . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; C32838 WUBlastX LTR_Pao 12296 12481 127 - . . . . . -1 -1 -1 . . . C32838 WUBlastX LTR_Pao 12481 12603 27 - . . . . . -1 -1 -1 . . . scaffold43134 WUBlastX DNA_IS4EU 211417 211920 177 + . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold36898 WUBlastX DNA_Maverick 12494 12583 57 - . . . . . -1 -1 -1 . . . scaffold43494 WUBlastX DNA_TcMar-Tc1 75993 76430 105 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 395508 396137 382 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 396089 397153 530 + . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX DNA_Harbinger 250256 250477 50 + . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX DNA_Harbinger 250458 250682 160 + . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX DNA_Harbinger 250663 251418 685 + . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LTR_Gypsy 82875 83489 231 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_Sola 236386 236607 73 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_Sola 237145 237756 328 + . . . . . -1 -1 -1 . . . scaffold34106 WUBlastX LTR_DIRS 11729 12319 420 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_DIRS 12869 13531 412 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold41466 WUBlastX LINE_Jockey 41358 42095 58 + . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX DNA_Crypton 193746 194324 176 + . . scaffold1769 GLEAN mRNA 194019 207786 0.990769 + . ID=CGI_10009243; scaffold853 WUBlastX LTR_Gypsy 452364 452669 98 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold42592 WUBlastX DNA_Harbinger 95207 95560 171 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX DNA_Harbinger 998912 999298 158 + . . scaffold149 GLEAN mRNA 989278 1013104 0.999502 - . ID=CGI_10025337; scaffold149 WUBlastX DNA_Harbinger 998912 999298 158 + . . scaffold149 GLEAN mRNA 998861 1001294 1 + . ID=CGI_10025338; scaffold471 WUBlastX LINE_RTE-X 1213261 1213545 126 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 31452 33254 797 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 33331 33843 270 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LINE_CR1 171981 172649 501 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Gypsy 304594 306747 1074 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_En-Spm 50439 50882 277 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_En-Spm 50846 50899 32 + . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX RC_Helitron 118638 118829 25 - . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX LINE_L1-Tx1 26587 27102 489 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX LINE_L1-Tx1 27195 27803 332 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX LINE_L1-Tx1 27916 28869 169 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX RC_Helitron 7627 8457 20 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX RC_Helitron 189693 189899 42 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy 309466 311007 445 + . . . . . -1 -1 -1 . . . scaffold38196 WUBlastX LINE_L2 26809 27759 79 + . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX DNA_Harbinger 295339 295476 46 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_hAT-Ac 762430 762831 113 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_R2-Hero 681193 681504 208 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 577862 578173 78 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold547 WUBlastX LINE_RTE-X 541034 541357 111 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 215752 216132 113 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX DNA_TcMar-Tc1 317985 318512 67 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 12711 14438 162 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 15362 15502 61 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 15502 16053 137 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 16305 16892 376 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 17533 17763 24 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_RTE-X 164561 166261 332 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_CR1-L2 448195 449955 984 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LTR_Gypsy-Cigr 400920 403151 1104 - . . scaffold588 GLEAN mRNA 392510 405723 0.983024 + . ID=CGI_10016225; scaffold1601 WUBlastX LINE_L2 192959 193366 86 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Gypsy-Cigr 53385 53999 144 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Ngaro 84592 85212 142 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Ngaro 109614 110210 131 + . . scaffold163 GLEAN mRNA 103633 112444 0.895517 + . ID=CGI_10018610; scaffold1174 WUBlastX DNA_hAT-Blackja 1074693 1074815 55 - . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold354 WUBlastX LTR_Ngaro 7235 7552 111 + . . . . . -1 -1 -1 . . . scaffold809 WUBlastX LINE_Penelope 83202 83726 50 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 107372 107572 38 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Gypsy 393448 393915 94 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold317 WUBlastX DNA_Maverick 165481 166257 123 - . . . . . -1 -1 -1 . . . scaffold42760 WUBlastX LTR_Gypsy-Cigr 184290 184973 605 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L2 201391 202701 89 + . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold1843 WUBlastX LINE_CR1 135187 136005 111 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 295322 295633 65 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold34942 WUBlastX LTR_Gypsy 3948 4286 200 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_IS4EU 837481 838212 83 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 247128 247469 39 - . . . . . -1 -1 -1 . . . scaffold28138 WUBlastX LINE_RTE-X 4034 4573 122 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 640638 642233 1094 + . . . . . -1 -1 -1 . . . scaffold35138 WUBlastX LTR_Gypsy 6257 7852 1094 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 61999 62241 89 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 32172 32336 33 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_IS4EU 270440 270940 149 + . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX LINE_L1 42655 42720 20 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; scaffold574 WUBlastX LINE_L1 38746 39087 124 - . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_L1 39105 39254 34 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 90983 91126 32 + . . . . . -1 -1 -1 . . . C25792 WUBlastX LTR_Ngaro 2023 2802 177 + . . . . . -1 -1 -1 . . . C26168 WUBlastX LINE_L1-Tx1 1144 3753 1357 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Gypsy 14629 14820 37 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_Jockey 265708 265881 64 + . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX LINE_I 254891 255004 32 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Gypsy 539927 540598 210 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX DNA_TcMar-Tc2 86486 86599 31 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 193413 193571 54 + . . . . . -1 -1 -1 . . . C33658 WUBlastX DNA_Sola 10953 11453 59 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; C33658 WUBlastX DNA_Sola 11642 12106 108 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; scaffold1164 WUBlastX DNA_TcMar-Tc1 79131 79217 80 - . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX DNA_TcMar-Tc1 152966 153091 63 - . . scaffold1447 GLEAN mRNA 145066 154561 0.838589 - . ID=CGI_10013818; scaffold983 WUBlastX LINE_L1-Tx1 363364 363987 138 + . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 30234 30752 48 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_Crypton 888390 888884 97 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-BovB 107942 108334 125 - . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX LTR_Ngaro 23906 24235 111 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold1736 WUBlastX LTR_Gypsy 516564 518363 519 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Maverick 61164 62672 949 - . . . . . -1 -1 -1 . . . scaffold27958 WUBlastX LINE_L1-Tx1 2342 2515 71 + . . . . . -1 -1 -1 . . . scaffold27958 WUBlastX LINE_L1-Tx1 2550 5012 1408 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 1341228 1343021 1264 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_CR1-L2 233633 234163 181 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_L2 76085 76537 26 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_L1-Tx1 702553 703179 105 - . . . . . -1 -1 -1 . . . scaffold476 WUBlastX LINE_L1-Tx1 8050 8928 115 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 101551 101625 24 - . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_L2 44753 45790 130 + . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX DNA_Sola 25065 25292 160 - . . scaffold40424 GLEAN mRNA 14342 47521 0.651302 - . ID=CGI_10004127; scaffold867 WUBlastX LINE_RTE-X 397922 398338 76 + . . . . . -1 -1 -1 . . . scaffold38848 WUBlastX DNA_TcMar-Tc1 54066 54602 177 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 282617 284251 888 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold500 WUBlastX LINE_L1-Tx1 100704 101180 213 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1-Tx1 206314 206556 28 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_CR1 535338 536099 160 + . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_CR1 9292 10065 172 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LTR_Ngaro 91052 91501 225 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 407125 407646 232 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold1281 WUBlastX LTR_DIRS 10416 10940 214 + . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 11742 12266 214 - . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold36716 WUBlastX LTR_Gypsy 55 780 209 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 237838 238563 209 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX DNA_IS4EU 312784 312867 32 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX DNA_IS4EU 312869 313330 204 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1 336002 336394 107 + . . . . . -1 -1 -1 . . . scaffold38654 WUBlastX LINE_Penelope 35354 35455 35 - . . . . . -1 -1 -1 . . . scaffold35194 WUBlastX DNA_Maverick 6906 7475 219 + . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX DNA_Maverick 60024 60404 215 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LTR_Ngaro 110632 111078 230 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Pao 12870 13070 178 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold335 WUBlastX LTR_Gypsy 127763 127897 82 - . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_Harbinger 158365 158643 150 - . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_Harbinger 158748 158915 56 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_MuDR 868076 869968 172 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX LINE_CR1 154459 154569 23 + . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LTR_Gypsy 17405 18661 677 - . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LTR_Gypsy 18834 20990 1353 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 371148 371225 23 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_Harbinger 310250 310681 180 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1081 WUBlastX LTR_Gypsy 50874 51242 47 + . . . . . -1 -1 -1 . . . scaffold1418 WUBlastX DNA_IS4EU 17706 18395 225 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_RTE-X 167311 167424 46 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_RTE-X 286108 286299 110 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_RTE-X 285880 286671 166 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_CR1 27131 27427 156 - . . scaffold38626 GLEAN mRNA 19577 33145 1 - . ID=CGI_10002868; scaffold22 WUBlastX LINE_RTE-X 242809 243060 149 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-X 243188 243451 124 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-X 243456 243494 22 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 194320 197694 2068 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_PiggyBac 606633 607109 160 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 607338 607526 105 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold1024 WUBlastX LINE_RTE-X 1622706 1622981 99 - . . . . . -1 -1 -1 . . . scaffold1526 WUBlastX DNA_TcMar-Tc2 89085 89255 52 - . . scaffold1526 GLEAN mRNA 83330 93705 0.632332 - . ID=CGI_10006187; scaffold174 WUBlastX DNA_Sola 42541 42690 116 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LTR_Pao 373220 373495 84 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Pao 96359 97258 269 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 300860 301795 221 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 292470 292574 29 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 322512 322862 46 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_Rex-Babar 17721 17987 49 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; C35794 WUBlastX LTR_Pao 9982 12078 1560 + . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LINE_CR1-L2 16254 16625 77 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LINE_CR1-L2 17074 17487 126 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1 258291 259079 145 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Maverick 1003421 1003726 130 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Maverick 1003825 1004031 143 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 377678 377800 73 - . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LTR_Gypsy 76221 79922 2529 - . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 44546 45619 896 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_hAT-Ac 362738 363184 191 + . . . . . -1 -1 -1 . . . scaffold633 WUBlastX LINE_L1-Tx1 19991 21067 158 + . . scaffold633 GLEAN mRNA 18015 46855 0.77454 - . ID=CGI_10004268; scaffold1560 WUBlastX LINE_L1 241583 241834 38 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_RTE-X 291423 292115 211 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Sola 252969 253205 94 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Pao 346925 348592 440 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 158806 158883 29 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 18806 19003 26 + . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L1 10417 10605 21 + . . . . . -1 -1 -1 . . . scaffold1121 WUBlastX LINE_L1 13159 13944 277 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1 45960 46442 52 - . . . . . -1 -1 -1 . . . C26004 WUBlastX DNA_TcMar-Tc1 139 1140 258 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_Maverick 406970 407725 262 - . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LTR_Ngaro 69350 70321 206 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_L1-Tx1 707577 707807 89 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold121 WUBlastX DNA_TcMar-Tc1 419483 419929 249 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_R2-Hero 178722 179399 166 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_Kolobok 329738 330178 24 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_Kolobok 332074 332523 62 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold614 WUBlastX LINE_RTE-X 438211 438627 52 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 101315 101512 64 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 101637 102317 32 - . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LTR_Gypsy 41178 41243 29 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold163 WUBlastX LINE_RTE-X 77209 77733 73 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy 562161 562595 75 - . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_Kolobok 184454 184582 70 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold442 WUBlastX DNA_P 17003 17122 46 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 647470 648993 64 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 234259 235188 295 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L1 1079658 1080596 277 + . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LTR_Gypsy 5019 5132 34 - . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LTR_Gypsy 5140 6120 291 - . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LINE_RTE-X 104593 104949 93 + . . . . . -1 -1 -1 . . . scaffold1859 WUBlastX LINE_CR1-L2 48197 48343 92 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Harbinger 458327 459034 370 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_IS4EU 552590 553333 350 - . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX DNA_Maverick 306347 306940 376 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_CR1-L2 241093 241584 163 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Ngaro 20541 20687 43 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_DIRS? 256446 256646 136 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_RTE-X 270938 271102 26 - . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LINE_RTE-X 82874 83008 59 + . . scaffold1277 GLEAN mRNA 76656 92744 0.765999 - . ID=CGI_10008022; scaffold1574 WUBlastX LINE_RTE-X 456630 457619 334 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold211 WUBlastX LINE_RTE-X 642712 642924 92 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 108675 109073 100 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 107648 107902 94 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L1-Tx1 173931 175250 183 + . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1862 WUBlastX LINE_CR1 257951 258205 217 + . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy 51867 52736 391 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Kolobok-IS4 136709 137503 187 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold191 WUBlastX DNA_Kolobok 206517 206717 76 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold1717 WUBlastX LINE_RTE-X 313629 314009 223 - . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX LINE_RTE-X 1 756 206 - . . . . . -1 -1 -1 . . . scaffold40100 WUBlastX LINE_CR1 5229 5624 214 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 53264 53632 330 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LTR_DIRS 303632 303808 64 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LTR_DIRS 304395 304919 251 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LTR_DIRS 304904 305176 47 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy-Cigr 168725 169135 236 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold211 WUBlastX LINE_Penelope 657586 658749 434 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_DIRS? 281250 282062 522 - . . . . . -1 -1 -1 . . . scaffold34106 WUBlastX LTR_DIRS 13417 14337 485 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold42930 WUBlastX DNA_Maverick 128340 129281 473 - . . . . . -1 -1 -1 . . . scaffold559 WUBlastX DNA_Kolobok 38674 38913 118 + . . . . . -1 -1 -1 . . . C30608 WUBlastX LTR_Gypsy 371 715 37 + . . . . . -1 -1 -1 . . . C31564 WUBlastX LINE_L1-Tx1 8434 9714 446 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Gypsy 252975 253637 31 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1 1834239 1834370 28 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-BovB 776118 776813 575 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Ngaro 7956 8213 94 - . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 115932 116279 92 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 644542 644796 103 - . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1-Tx1 164626 164982 93 - . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LINE_L2 7836 8819 551 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1-Tx1 10491 11162 114 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LINE_RTE-X 120055 120498 64 + . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX DNA_hAT-hATw 101571 103076 571 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1-Tx1 189786 190229 357 - . . . . . -1 -1 -1 . . . C28108 WUBlastX DNA_TcMar-Pogo 4205 4738 277 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_L2 431402 432679 631 - . . scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; scaffold43804 WUBlastX LTR_Ngaro 314860 316305 570 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_RTE-BovB 485553 486074 99 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold1004 WUBlastX LINE_RTE-BovB 486256 487689 513 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold425 WUBlastX LINE_CR1-L2 94110 94466 79 + . . . . . -1 -1 -1 . . . scaffold38934 WUBlastX DNA_Kolobok 46366 47082 411 - . . scaffold38934 GLEAN mRNA 26982 47955 0.375661 + . ID=CGI_10003097; scaffold1160 WUBlastX LTR_Gypsy-Cigr 160307 160348 27 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy-Cigr 161338 161772 220 - . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 46990 47298 219 - . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX LTR_Gypsy 84677 86050 509 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; C33658 WUBlastX LINE_L1-Tx1 3401 4402 153 - . . . . . -1 -1 -1 . . . C33658 WUBlastX LINE_L1-Tx1 4426 5268 470 - . . . . . -1 -1 -1 . . . scaffold470 WUBlastX LTR_Gypsy 1518 2093 217 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Ngaro 326510 328108 723 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 55081 55629 407 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 57104 57352 87 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_CR1-L2 273730 274281 166 - . . . . . -1 -1 -1 . . . scaffold1646 WUBlastX LTR_Gypsy 154782 156005 714 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Pao 146575 146691 55 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 16404 16922 79 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_RTE-X 305142 307304 685 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 87480 88175 378 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 1227733 1227825 62 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold719 WUBlastX LTR_Pao 352022 352354 70 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold1532 WUBlastX LTR_Pao 603137 603283 60 + . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LTR_Pao 176447 176902 34 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX DNA_hAT 317774 317989 60 - . . scaffold576 GLEAN mRNA 315203 324696 0.999395 - . ID=CGI_10018773; scaffold42558 WUBlastX LINE_CR1 140629 140802 62 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_CR1-L2 120400 120660 46 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_CR1 475948 476037 42 + . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_CR1 563794 563997 79 + . . scaffold506 GLEAN mRNA 555361 563909 0.886004 + . ID=CGI_10019282; scaffold695 WUBlastX LINE_CR1 367377 367457 38 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L2 124175 124414 68 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 665028 665255 72 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold41766 WUBlastX LTR_Gypsy 32174 32359 61 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold1857 WUBlastX LTR_Ngaro 46258 46494 29 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_DIRS 212743 212853 57 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_DIRS 516576 517133 51 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Ngaro 124922 125329 45 + . . scaffold412 GLEAN mRNA 49163 134272 0.261275 - . ID=CGI_10018559; scaffold170 WUBlastX LTR_Ngaro 181001 181141 66 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Ngaro 537666 537755 55 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LTR_Gypsy 225974 226159 22 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold1456 WUBlastX LTR_Gypsy 117731 117898 24 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 859849 860076 69 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX RC_Helitron 476696 476767 37 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_TcMar-Marin 422475 422729 50 - . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX LINE_Penelope 14608 14718 37 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 215610 215669 35 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Tc2 1790793 1791338 65 + . . . . . -1 -1 -1 . . . scaffold227 WUBlastX LINE_Penelope 295050 295196 56 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_Penelope 591347 591457 81 + . . scaffold1794 GLEAN mRNA 591161 591451 0.999372 - . ID=CGI_10019600; scaffold337 WUBlastX LINE_Penelope 996735 996899 21 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Tc1 745033 745146 22 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1 144893 145141 38 + . . . . . -1 -1 -1 . . . scaffold36778 WUBlastX LINE_L1 32684 33409 20 + . . . . . -1 -1 -1 . . . scaffold34780 WUBlastX LINE_L1-Tx1 20662 20820 32 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_L1 225032 225118 27 - . . . . . -1 -1 -1 . . . scaffold39652 WUBlastX LINE_RTE-X 62850 63056 56 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 513309 513665 86 + . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_Rex-Babar 13946 14020 25 - . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LTR_Gypsy 14937 15146 36 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_Maverick 1212518 1212997 43 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Sola 577000 577470 29 + . . scaffold86 GLEAN mRNA 577054 579340 0.999999 + . ID=CGI_10028160; scaffold102 WUBlastX DNA_TcMar-Tc2 257608 257847 47 - . . scaffold102 GLEAN mRNA 251987 267295 0.910885 - . ID=CGI_10028430; scaffold41398 WUBlastX LINE_L1-Tx1 32399 32503 32 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_Gypsy 285766 285822 27 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc1 246369 246434 21 + . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_CR1 228982 229176 80 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold663 WUBlastX LINE_CR1-L2 32875 33060 24 + . . . . . -1 -1 -1 . . . scaffold268 WUBlastX LINE_CR1-L2 56576 56671 27 + . . . . . -1 -1 -1 . . . C30988 WUBlastX LINE_LOA 6933 7025 30 + . . . . . -1 -1 -1 . . . C11568 WUBlastX LTR_DIRS? 27 179 72 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 706461 706556 20 + . . . . . -1 -1 -1 . . . C27812 WUBlastX LTR_Gypsy 2357 2446 29 - . . . . . -1 -1 -1 . . . scaffold40828 WUBlastX LTR_Gypsy 57920 58102 25 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold1277 WUBlastX LINE_L1 146099 146434 59 - . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L1 6009 6428 54 + . . scaffold41344 GLEAN mRNA 5867 6085 0.733461 + . ID=CGI_10004977; C29052 WUBlastX DNA_Kolobok 792 983 47 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_Penelope 3520 4089 36 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LINE_Penelope 50220 50531 37 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_Penelope 114055 114579 23 + . . . . . -1 -1 -1 . . . scaffold1747 WUBlastX DNA_PiggyBac 44130 44231 37 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_Proto2 89879 89962 27 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_Proto2 90089 90238 22 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX DNA_Merlin 347835 348236 78 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Copia 556185 556580 22 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; C20464 WUBlastX LTR_Copia 1000 1083 86 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_CR1 179287 179535 65 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_DIRS 1017448 1017633 55 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold41700 WUBlastX DNA_Crypton 25106 25699 28 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX DNA_Crypton 159166 159615 90 + . . . . . -1 -1 -1 . . . scaffold1867 WUBlastX LINE_L2 45032 45478 45 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 883086 883724 78 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LTR_Gypsy 286628 287221 48 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_Harbinger 613031 613201 78 + . . scaffold602 GLEAN mRNA 583910 615175 0.1397 + . ID=CGI_10023196; C34270 WUBlastX DNA_hAT-Blackja 8183 8503 55 + . . C34270 GLEAN mRNA 1937 17133 0.990126 - . ID=CGI_10001262; scaffold42408 WUBlastX LINE_L1 112656 113069 54 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold115 WUBlastX LINE_L1 130639 131175 65 - . . scaffold115 GLEAN mRNA 126783 131612 1 - . ID=CGI_10021378; scaffold90 WUBlastX DNA_Maverick 129096 129341 85 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_Maverick 160477 160566 46 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 515356 515493 29 - . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515356 515493 29 - . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold70 WUBlastX LINE_RTE-X 515656 515790 48 - . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515656 515790 48 - . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold113 WUBlastX LTR_Ngaro 116906 117685 20 + . . scaffold113 GLEAN mRNA 112752 117970 0.458528 + . ID=CGI_10021286; scaffold499 WUBlastX LINE_L2-Hydra 101065 102165 26 - . . scaffold499 GLEAN mRNA 88831 107103 0.615404 + . ID=CGI_10015763; C28108 WUBlastX LTR_Gypsy 2 358 101 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L2 318866 318913 22 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_DIRS 750987 751361 64 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_hAT-Hobo 135326 135682 20 + . . scaffold1024 GLEAN mRNA 124695 135408 0.992138 - . ID=CGI_10028523; C31270 WUBlastX RC_Helitron 6107 6463 75 - . . . . . -1 -1 -1 . . . scaffold935 WUBlastX LINE_L1 44853 45539 34 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1 549854 550579 47 - . . . . . -1 -1 -1 . . . C30768 WUBlastX DNA_IS4EU 6735 6776 21 + . . . . . -1 -1 -1 . . . C30768 WUBlastX DNA_IS4EU 7652 7750 26 + . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX DNA_Kolobok-Hyd 150131 150583 35 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 43123 43608 20 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_TcMar-Marin 90567 90803 69 + . . scaffold22 GLEAN mRNA 89502 123774 0.856288 - . ID=CGI_10028828; scaffold780 WUBlastX LINE_RTE-X 229655 229840 74 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232423 232608 74 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold77 WUBlastX LINE_RTE-X 471069 471695 33 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LINE_RTE-X 113299 113475 54 + . . scaffold569 GLEAN mRNA 93334 114910 0.803638 - . ID=CGI_10009496; scaffold1321 WUBlastX LINE_RTE-BovB 4187 4561 26 - . . . . . -1 -1 -1 . . . scaffold40080 WUBlastX LINE_RTE-BovB 24514 25059 68 + . . scaffold40080 GLEAN mRNA 23516 25927 0.997813 - . ID=CGI_10003844; scaffold43076 WUBlastX LTR_Copia 187757 187885 29 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Copia 187757 187885 29 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold1262 WUBlastX DNA_Sola 69957 70133 112 + . . scaffold1262 GLEAN mRNA 67104 77376 1 - . ID=CGI_10018928; scaffold204 WUBlastX LINE_L1-Tx1 638346 638654 59 - . . scaffold204 GLEAN mRNA 632848 639424 1 + . ID=CGI_10026121; scaffold601 WUBlastX LINE_L1 779011 779478 37 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX DNA_TcMar-ISRm1 142205 142504 50 - . . . . . -1 -1 -1 . . . C33708 WUBlastX LTR_DIRS 5789 6079 28 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_Kolobok-IS4 152767 153102 102 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_Kolobok-IS4 833414 833695 80 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX DNA_Harbinger 208061 208267 49 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_Gypsy 606980 607126 114 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 801493 801603 32 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1 349190 349255 42 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_RTE-BovB 313 675 83 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX DNA_P 206848 206958 20 + . . . . . -1 -1 -1 . . . scaffold41806 WUBlastX LINE_RTE-X 63770 63985 93 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_RTE-X 267198 267452 61 - . . scaffold730 GLEAN mRNA 262816 271880 0.998589 - . ID=CGI_10019892; scaffold1788 WUBlastX DNA_TcMar-Pogo 324012 324458 29 + . . . . . -1 -1 -1 . . . scaffold118 WUBlastX DNA_IS4EU 18078 18983 37 - . . . . . -1 -1 -1 . . . scaffold36410 WUBlastX RC_Helitron 14880 15173 75 + . . scaffold36410 GLEAN mRNA 4689 21980 0.354487 - . ID=CGI_10001887; scaffold619 WUBlastX LTR_Ngaro 461303 461527 75 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 461518 461775 61 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L1 254362 254490 64 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold586 WUBlastX LINE_RTE-X 178005 178151 101 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold873 WUBlastX DNA_Maverick 175051 175221 25 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_TcMar-Pogo 283399 283509 26 - . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LINE_L1-Tx1 104995 105441 59 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX DNA_TcMar-Tc1 54624 54734 62 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX DNA_TcMar-Tc1 54766 55044 50 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_TcMar-Tc1 210320 210826 74 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold469 WUBlastX LTR_Gypsy 198431 198769 96 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Gypsy 434042 434092 31 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LTR_Gypsy 252649 253038 74 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 574603 575142 122 - . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LTR_Gypsy 73370 73711 128 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_IS4EU 170856 171074 41 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Gypsy 22713 22952 131 + . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_RTE-BovB 152814 153140 134 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-X 12511 12807 22 - . . . . . -1 -1 -1 . . . C34562 WUBlastX LTR_Ngaro 9746 10024 87 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1 182407 182487 52 - . . . . . -1 -1 -1 . . . scaffold193 WUBlastX LINE_R2-Hero 171474 171530 28 - . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LTR_Gypsy 40861 41163 72 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold42372 WUBlastX DNA_TcMar-Tc1 72513 73352 87 - . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_RTE-X 72593 72796 85 - . . . . . -1 -1 -1 . . . scaffold35014 WUBlastX DNA_PiggyBac 15397 15465 48 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold280 WUBlastX DNA_PiggyBac 361517 361858 111 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_TcMar-Ant1 270002 270844 111 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LTR_Pao 252971 253195 58 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_CR1 53134 53319 45 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1866 WUBlastX LINE_CR1-L2 221201 221419 133 - . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1753 WUBlastX DNA_Crypton 12370 12552 47 - . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_L1 142969 143235 50 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1 196938 197483 37 + . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_RTE-X 49742 50050 88 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L2 707714 708220 57 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L2 277131 277238 20 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 857211 857558 129 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_I 87916 88005 32 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold321 WUBlastX LINE_L1 155759 156295 53 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX DNA_TcMar-Fot1 56112 56543 128 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_TcMar-Marin 55161 55262 26 + . . . . . -1 -1 -1 . . . scaffold1577 WUBlastX LINE_Penelope 31866 32225 92 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Ngaro 114119 114298 96 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_RTE-X 270615 270974 112 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1-Tx1 87431 87640 25 + . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LINE_L1-Tx1 9308 9652 151 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_Ngaro 77057 78406 905 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_L1-Tx1 28891 30531 654 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 995859 996308 282 + . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_RTE-BovB 44131 44391 91 + . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_RTE-BovB 44399 44755 168 + . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_RTE-BovB 45795 46484 376 + . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_RTE-BovB 46828 46914 34 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L2 191855 192262 160 + . . . . . -1 -1 -1 . . . C22400 WUBlastX LINE_L2 1581 1784 20 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 336484 336567 22 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold1396 WUBlastX LINE_R2-Hero 82601 82996 57 - . . . . . -1 -1 -1 . . . scaffold1501 WUBlastX LTR_Gypsy 55223 55573 147 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_Penelope 503385 504257 56 - . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_RTE-X 145251 145718 125 - . . . . . -1 -1 -1 . . . scaffold76 WUBlastX LTR_Gypsy-Cigr 28172 28294 40 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX DNA_TcMar-Tc1 380500 380598 65 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_RTE-BovB 1013170 1014429 1034 + . . . . . -1 -1 -1 . . . scaffold633 WUBlastX LINE_L2 56924 57457 134 + . . scaffold633 GLEAN mRNA 49171 62840 0.82948 + . ID=CGI_10004269; scaffold40156 WUBlastX LINE_CR1-L2 19073 19165 32 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_CR1-L2 129751 130326 122 - . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_L2 56159 56635 140 + . . . . . -1 -1 -1 . . . scaffold42634 WUBlastX LINE_L2 153876 154595 97 + . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LINE_RTE-BovB 316616 316786 70 + . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 185255 185761 75 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_Kolobok 377953 378198 145 - . . scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold1093 WUBlastX LINE_Penelope 404667 404882 58 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold36202 WUBlastX LTR_Ngaro 20871 21449 71 - . . scaffold36202 GLEAN mRNA 3245 23503 0.999232 + . ID=CGI_10001812; scaffold490 WUBlastX LINE_L1-Tx1 158140 158547 49 - . . . . . -1 -1 -1 . . . scaffold1136 WUBlastX LINE_RTE-X 45110 45202 24 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_RTE-X 88736 89662 98 - . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_RTE-X 136789 136980 165 - . . scaffold1222 GLEAN mRNA 134214 152280 0.999999 + . ID=CGI_10016238; scaffold304 WUBlastX DNA_Sola 170681 171316 167 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Gypsy 54923 55180 43 + . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold1214 WUBlastX LINE_L2 209735 210325 135 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_Pao 332384 332494 23 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L1 656197 656397 120 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 106057 106152 53 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX DNA_Sola 668716 668856 33 + . . scaffold54 GLEAN mRNA 665380 671765 0.174144 + . ID=CGI_10023688; scaffold54 WUBlastX DNA_Sola 669714 669866 35 + . . scaffold54 GLEAN mRNA 665380 671765 0.174144 + . ID=CGI_10023688; scaffold54 WUBlastX DNA_Sola 670780 671223 115 + . . scaffold54 GLEAN mRNA 665380 671765 0.174144 + . ID=CGI_10023688; scaffold591 WUBlastX LINE_L2 1076295 1077230 462 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L2 1077227 1078084 687 - . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_En-Spm 98805 99824 98 + . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold867 WUBlastX LTR_DIRS 550036 550134 22 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LTR_Gypsy 34150 34359 81 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_L1-Tx1 162039 162647 148 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1-Tx1 248837 249274 142 - . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX LTR_Ngaro 115264 115323 29 + . . . . . -1 -1 -1 . . . scaffold40050 WUBlastX LINE_RTE-X 51767 51943 44 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_DIRS 150822 150971 68 - . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LINE_RTE-BovB 11507 12889 1308 - . . . . . -1 -1 -1 . . . C32888 WUBlastX LINE_CR1-L2 12443 12682 116 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX RC_Helitron 501855 502433 177 - . . scaffold1362 GLEAN mRNA 501660 502067 1 - . ID=CGI_10023944; scaffold1680 WUBlastX LINE_RTE-X 1836 2267 57 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_En-Spm 166097 166546 161 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_En-Spm 166470 168389 1067 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LINE_L1 112241 113743 941 + . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LTR_Gypsy-Troyk 545642 547507 1229 + . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Gypsy-Troyk 547530 547856 32 + . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold42760 WUBlastX LTR_Gypsy-Cigr 183043 184293 879 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L1-Tx1 337958 340603 1123 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 4208 4597 61 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_CR1-L2 22058 22498 208 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 104814 106055 282 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 134456 134701 53 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 135268 135726 359 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 135699 137207 535 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_L1 115118 115258 87 + . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LINE_L2 8603 8839 34 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX DNA_hAT-Blackja 399928 400434 185 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L1-Tx1 318567 318827 25 - . . scaffold1894 GLEAN mRNA 303181 340585 0.788071 + . ID=CGI_10013342; scaffold1894 WUBlastX LINE_L1-Tx1 318833 319354 128 - . . scaffold1894 GLEAN mRNA 303181 340585 0.788071 + . ID=CGI_10013342; C30324 WUBlastX DNA_Kolobok 146 1777 84 - . . . . . -1 -1 -1 . . . scaffold118 WUBlastX DNA_IS4EU 24814 25527 137 - . . . . . -1 -1 -1 . . . scaffold118 WUBlastX DNA_IS4EU 25660 25767 22 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LTR_Ngaro 4275 4526 125 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy-Cigr 12519 12719 52 - . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LTR_Gypsy 139976 140572 241 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 637640 637831 31 - . . . . . -1 -1 -1 . . . C24828 WUBlastX LTR_Gypsy 2677 2913 225 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy 92532 93080 92 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LINE_L1 321833 322237 117 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold502 WUBlastX LINE_RTE-X 600854 601381 139 - . . . . . -1 -1 -1 . . . scaffold38148 WUBlastX LINE_RTE-X 22621 23115 154 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-X 717740 718000 102 - . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-X 718009 718314 105 - . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold42236 WUBlastX DNA_hAT 119031 119102 35 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 119339 119560 160 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold165 WUBlastX LTR_Pao 197614 198042 153 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold1583 WUBlastX LTR_DIRS 539268 539966 200 + . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LTR_DIRS 82257 82691 207 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 381452 381733 28 - . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 30559 30669 63 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_TcMar-Tc1 252414 252653 142 - . . scaffold1 GLEAN mRNA 239740 257002 0.998426 - . ID=CGI_10013473; scaffold126 WUBlastX LTR_Gypsy-Cigr 477065 477454 369 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_L2 272440 272988 178 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Ngaro 625772 626080 155 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_hAT-Ac 57518 57868 230 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_RTE-X 54314 55303 151 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold343 WUBlastX LINE_RTE-X 339211 339765 45 - . . scaffold343 GLEAN mRNA 339184 340140 0.999999 - . ID=CGI_10021750; scaffold106 WUBlastX LINE_RTE-X 529197 530222 208 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-X 470596 470955 40 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_DIRS 487833 487985 38 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_DIRS 487994 488212 66 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy-Cigr 209342 209974 345 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_Helitron 133043 133633 22 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Ngaro 312060 312512 64 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L2 251938 252837 104 + . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LTR_Gypsy 33024 33167 30 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_IS4EU 463691 464155 184 + . . . . . -1 -1 -1 . . . scaffold1231 WUBlastX LINE_RTE-BovB 105771 105983 152 + . . scaffold1231 GLEAN mRNA 79934 107425 0.93438 + . ID=CGI_10004703; scaffold1231 WUBlastX LINE_RTE-BovB 106116 106328 74 + . . scaffold1231 GLEAN mRNA 79934 107425 0.93438 + . ID=CGI_10004703; scaffold448 WUBlastX LTR_DIRS 28731 29282 131 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold448 WUBlastX LTR_DIRS 29356 29727 59 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold448 WUBlastX LTR_DIRS 29861 29962 22 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold1480 WUBlastX LINE_CR1-L2 121846 122133 116 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 32384 32512 23 - . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX DNA_Kolobok 15280 15531 43 + . . scaffold1789 GLEAN mRNA 10291 23583 0.974284 + . ID=CGI_10003175; scaffold472 WUBlastX LINE_RTE-X 120618 120737 33 + . . . . . -1 -1 -1 . . . C21044 WUBlastX DNA_IS 21 1238 2000 - . . . . . -1 -1 -1 . . . C21228 WUBlastX DNA_IS 101 1318 2000 + . . . . . -1 -1 -1 . . . C21740 WUBlastX DNA_IS 261 1478 2000 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX DNA_IS 656552 657769 2000 + . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX DNA_IS 22 1239 2000 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX DNA_IS 536937 538154 2000 + . . . . . -1 -1 -1 . . . scaffold563 WUBlastX DNA_IS 455640 456857 2000 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L2 240489 240740 50 - . . scaffold790 GLEAN mRNA 239122 257283 0.83657 + . ID=CGI_10013172; scaffold168 WUBlastX LINE_L2 586906 587757 186 - . . scaffold168 GLEAN mRNA 580127 599947 0.430988 + . ID=CGI_10025600; scaffold963 WUBlastX DNA_IS4EU 312492 312728 34 + . . . . . -1 -1 -1 . . . scaffold26 WUBlastX LTR_Gypsy 38442 38723 279 - . . scaffold26 GLEAN mRNA 37184 39443 0.783788 + . ID=CGI_10002298; scaffold40088 WUBlastX DNA_Harbinger 9812 9964 50 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 488777 489646 181 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_CR1 76405 76452 20 - . . . . . -1 -1 -1 . . . scaffold37064 WUBlastX LINE_L2 3187 3987 68 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 972496 973029 139 - . . scaffold3 GLEAN mRNA 958982 982969 0.663393 + . ID=CGI_10027317; scaffold406 WUBlastX DNA_Kolobok 377971 378198 53 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_MuDR 31778 32995 244 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L1 93066 93380 120 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 330196 330585 99 + . . scaffold1583 GLEAN mRNA 329253 340870 0.998703 - . ID=CGI_10025825; scaffold873 WUBlastX DNA_Maverick 179571 179714 23 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Ngaro 485453 485989 175 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold1123 WUBlastX LTR_Gypsy 208289 209557 653 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 77459 78205 563 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 78178 78570 409 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Pao 198867 198983 28 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold1186 WUBlastX DNA_IS4EU 264171 264833 238 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_IS4EU 929658 930080 44 - . . scaffold1174 GLEAN mRNA 917037 939462 0.964473 + . ID=CGI_10026072; scaffold853 WUBlastX LINE_RTE-X 443113 444129 227 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_Sola 37767 38957 227 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_TcMar-Tigge 96791 96928 40 - . . scaffold77 GLEAN mRNA 92627 103108 0.416789 - . ID=CGI_10027966; scaffold286 WUBlastX LINE_L1-Tx1 204927 205145 90 + . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_CR1-L2 74885 75349 276 - . . . . . -1 -1 -1 . . . scaffold1550 WUBlastX LINE_L1 4002 4688 269 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 193398 193790 42 + . . . . . -1 -1 -1 . . . scaffold1242 WUBlastX LINE_RTE-BovB 1555 1701 27 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX LTR_Gypsy 22444 24036 1043 + . . scaffold39196 GLEAN mRNA 20999 26289 0.999968 + . ID=CGI_10003216; scaffold39196 WUBlastX LTR_Gypsy 22444 24036 1043 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX LTR_Gypsy 24003 25796 1285 + . . scaffold39196 GLEAN mRNA 20999 26289 0.999968 + . ID=CGI_10003216; scaffold39196 WUBlastX LTR_Gypsy 24003 25796 1285 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold1377 WUBlastX DNA_Crypton 167837 168262 135 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX DNA_Crypton 168259 168597 151 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_DIRS 6272 7867 243 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 395438 395791 328 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Gypsy 370021 371232 249 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy 44400 45242 111 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1 655206 655274 20 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX DNA_MuDR 26008 26694 259 + . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LTR_DIRS 152357 152713 136 + . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LTR_DIRS 151885 152151 139 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LTR_Gypsy 375367 377313 1233 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_hAT-Ac 64246 64536 67 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_RTE-X 138692 139549 248 + . . scaffold1382 GLEAN mRNA 113082 142955 0.812933 - . ID=CGI_10011173; scaffold1625 WUBlastX LINE_RTE-X 170191 170367 20 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold146 WUBlastX LINE_L1-Tx1 624937 625695 152 - . . scaffold146 GLEAN mRNA 617556 637446 0.912862 - . ID=CGI_10024915; scaffold578 WUBlastX DNA_Kolobok 23722 23895 84 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold1179 WUBlastX LINE_L1 1212986 1213156 71 + . . scaffold1179 GLEAN mRNA 1211321 1215235 0.457085 - . ID=CGI_10027415; scaffold1179 WUBlastX LINE_L1 1213967 1214215 51 + . . scaffold1179 GLEAN mRNA 1211321 1215235 0.457085 - . ID=CGI_10027415; scaffold392 WUBlastX LINE_Penelope 481104 481334 36 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Maverick 526396 526884 247 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 479462 479833 281 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_TcMar-Tc1 198788 199717 262 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 459771 460235 80 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 460234 460695 123 - . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX DNA_hAT-hATw 73357 74307 169 - . . . . . -1 -1 -1 . . . scaffold1417 WUBlastX DNA_hAT-hATw 74319 74477 75 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_RTE-X 240088 240279 122 - . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LTR_DIRS 35262 35543 22 + . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LTR_DIRS 35539 36042 243 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_CR1 1085826 1085909 56 + . . . . . -1 -1 -1 . . . scaffold37760 WUBlastX LTR_DIRS 20489 20872 244 - . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold541 WUBlastX LTR_Gypsy 599339 599464 22 + . . . . . -1 -1 -1 . . . scaffold41652 WUBlastX LINE_L1-Tx1 5653 6723 119 + . . scaffold41652 GLEAN mRNA 3816 27737 0.770849 - . ID=CGI_10005379; scaffold626 WUBlastX LINE_L1-Tx1 323468 323872 240 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_CR1 63290 63778 58 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_Proto2 555302 557521 125 - . . . . . -1 -1 -1 . . . scaffold38654 WUBlastX LINE_Penelope 35348 35545 28 - . . . . . -1 -1 -1 . . . scaffold40264 WUBlastX LINE_CR1 49499 51058 201 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold1253 WUBlastX LTR_Gypsy 41190 41243 38 + . . scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold1727 WUBlastX DNA_hAT-hATw 37442 38917 184 + . . scaffold1727 GLEAN mRNA 27437 43036 0.635377 + . ID=CGI_10002672; scaffold374 WUBlastX LINE_Penelope 199209 199727 134 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_Penelope 199729 200565 39 - . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_RTE-BovB 141468 141743 63 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_CR1 763729 764319 62 + . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX LINE_RTE-X 61548 61754 80 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_RTE-X 216633 216953 136 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 500920 501243 89 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 505414 505542 34 - . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_L1-Tx1 184750 185343 120 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 1079118 1079990 287 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy 126588 126932 82 - . . . . . -1 -1 -1 . . . scaffold1201 WUBlastX LTR_Gypsy 4647 5141 333 - . . . . . -1 -1 -1 . . . scaffold43526 WUBlastX LINE_RTE-X 181496 182467 348 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 708310 708726 106 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 709129 709410 180 - . . . . . -1 -1 -1 . . . scaffold41452 WUBlastX LINE_L2 62790 63128 215 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold1347 WUBlastX DNA_En-Spm 335362 336300 323 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_RTE-X 215232 215723 129 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Ngaro 42564 43088 129 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_MuDR 272818 273057 41 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Ngaro 225375 226229 258 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; C34630 WUBlastX DNA_TcMar-Tc1 3237 3683 119 - . . . . . -1 -1 -1 . . . C34630 WUBlastX DNA_TcMar-Tc1 3769 4233 121 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1 289681 289791 39 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1 735796 736011 81 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 857172 857492 85 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 857718 858125 113 - . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Ngaro 7486 7965 175 - . . . . . -1 -1 -1 . . . scaffold120 WUBlastX DNA_Crypton 219356 219910 117 - . . scaffold120 GLEAN mRNA 195224 226189 0.999675 - . ID=CGI_10017534; scaffold120 WUBlastX DNA_Crypton 220262 220918 244 - . . scaffold120 GLEAN mRNA 195224 226189 0.999675 - . ID=CGI_10017534; scaffold1186 WUBlastX DNA_IS4EU 265739 266356 345 - . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1 110444 110656 122 + . . . . . -1 -1 -1 . . . scaffold41008 WUBlastX LTR_Ngaro 58268 58726 150 + . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Pao 59441 60133 272 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LTR_Gypsy 165975 166859 77 + . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_RTE-X 9479 9802 103 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold895 WUBlastX DNA_Harbinger 176768 176965 61 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX DNA_Harbinger 177105 177302 117 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX DNA_Harbinger 177389 177475 53 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX DNA_Harbinger 177662 177784 82 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_TcMar-Fot1 327011 328183 422 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Ngaro 164691 164996 196 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_CR1 511304 511612 40 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold41568 WUBlastX LTR_Gypsy 84989 85408 266 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 85441 85632 98 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 85661 85885 50 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold6 WUBlastX LINE_L1-Tx1 67851 69035 238 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_L1-Tx1 128235 129485 330 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_L1-Tx1 191713 192588 369 + . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Maverick 66913 67428 250 + . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L1-Tx1 36231 37046 98 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_L2 305054 305152 22 + . . . . . -1 -1 -1 . . . scaffold409 WUBlastX DNA_TcMar-Marin 60454 60624 74 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold42760 WUBlastX LTR_Gypsy 182911 183756 290 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LTR_Gypsy 411031 411774 488 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LTR_Gypsy 210410 210748 83 + . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_L1 146729 146890 33 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 675213 675956 476 + . . . . . -1 -1 -1 . . . scaffold881 WUBlastX LTR_Pao 9 836 540 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX RC_Helitron 438746 438952 131 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; C29438 WUBlastX LINE_RTE-X 3631 4029 182 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold1307 WUBlastX LINE_L1-Tx1 195596 195835 99 - . . . . . -1 -1 -1 . . . C31542 WUBlastX LINE_RTE-X 1042 2076 450 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_L2 32079 32372 175 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold1347 WUBlastX DNA_En-Spm 335207 335368 22 + . . . . . -1 -1 -1 . . . scaffold1464 WUBlastX LTR_Gypsy 2378 2596 88 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold1424 WUBlastX LTR_Gypsy 30240 31166 72 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_Harbinger 1289772 1290779 525 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 684430 684633 105 + . . . . . -1 -1 -1 . . . scaffold33082 WUBlastX LINE_RTE-X 6219 6572 85 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold288 WUBlastX DNA_TcMar-Tc1 158671 159126 262 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX DNA_TcMar-Tc1 159110 159565 195 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; C28510 WUBlastX DNA_Sola 1298 1402 69 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_R2-Hero 321595 322896 104 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_R2-Hero 322796 323005 42 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_R2-Hero 323243 323749 246 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_Gypsy 410755 411666 432 + . . . . . -1 -1 -1 . . . scaffold35438 WUBlastX LINE_L1 11535 12023 46 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold751 WUBlastX LINE_L1-Tx1 136700 137278 92 + . . . . . -1 -1 -1 . . . scaffold1357 WUBlastX LTR_Gypsy 4886 5449 24 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_CR1 402910 403566 212 + . . . . . -1 -1 -1 . . . scaffold839 WUBlastX LTR_Gypsy 89356 90459 642 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 391039 391347 148 + . . . . . -1 -1 -1 . . . scaffold371 WUBlastX LINE_RTE-X 40255 40443 65 + . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX LINE_L1-Tx1 186665 188218 546 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 497173 497739 190 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-BovB 370311 370430 36 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 596170 596391 50 + . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1 324852 325136 203 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1 342024 342188 74 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold1423 WUBlastX LTR_Gypsy 1040166 1041062 415 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_DIRS 1353824 1354636 369 - . . scaffold150 GLEAN mRNA 1351630 1358824 0.998084 - . ID=CGI_10028676; scaffold150 WUBlastX LTR_DIRS 1354612 1355247 275 - . . scaffold150 GLEAN mRNA 1351630 1358824 0.998084 - . ID=CGI_10028676; scaffold40172 WUBlastX LTR_DIRS 59175 60722 573 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Ngaro 247756 247911 68 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_TcMar-Pogo 95306 96658 741 - . . scaffold77 GLEAN mRNA 92627 103108 0.416789 - . ID=CGI_10027966; scaffold847 WUBlastX LINE_RTE-X 679432 679977 90 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 67807 67926 22 + . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LTR_Gypsy-Cigr 29970 30101 26 + . . . . . -1 -1 -1 . . . scaffold40476 WUBlastX LTR_Gypsy 20224 20979 483 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 594935 595033 51 + . . scaffold1589 GLEAN mRNA 592118 603104 0.965132 - . ID=CGI_10024122; scaffold41568 WUBlastX LTR_Gypsy 86124 86213 29 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold413 WUBlastX RC_Helitron 278500 280227 365 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_L1 82437 83471 241 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_RTE-X 610100 612259 718 - . . . . . -1 -1 -1 . . . scaffold42486 WUBlastX LTR_DIRS 159431 160207 179 + . . . . . -1 -1 -1 . . . scaffold42486 WUBlastX LTR_DIRS 160231 160446 121 + . . . . . -1 -1 -1 . . . scaffold42486 WUBlastX LTR_DIRS 160407 160889 180 + . . . . . -1 -1 -1 . . . scaffold42486 WUBlastX LTR_DIRS 161364 161621 49 + . . . . . -1 -1 -1 . . . scaffold42486 WUBlastX LTR_DIRS 161621 161746 69 + . . . . . -1 -1 -1 . . . scaffold42486 WUBlastX LTR_DIRS 161722 162303 200 + . . . . . -1 -1 -1 . . . scaffold1206 WUBlastX LINE_CR1-L2 29525 29707 45 + . . . . . -1 -1 -1 . . . scaffold1811 WUBlastX LINE_L2 99172 99459 59 + . . . . . -1 -1 -1 . . . scaffold42570 WUBlastX LINE_CR1 15287 15418 29 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold890 WUBlastX LINE_L2 290577 290780 52 - . . scaffold890 GLEAN mRNA 287435 312343 0.999997 - . ID=CGI_10014480; scaffold22 WUBlastX DNA_MuDR 1316335 1316706 56 + . . scaffold22 GLEAN mRNA 1296873 1324907 0.541396 + . ID=CGI_10028906; scaffold223 WUBlastX LINE_CR1 146346 146507 39 - . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_Rex-Babar 631572 631931 36 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy-Cigr 522 590 25 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 540982 541176 28 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX DNA_TcMar-Tc1 85441 85635 67 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LINE_L2 298148 298513 33 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Gypsy 27848 27997 66 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Gypsy 27997 28140 34 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX LTR_Gypsy 167354 167470 49 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LTR_Gypsy 715537 715650 81 + . . scaffold1836 GLEAN mRNA 712795 721764 0.843575 + . ID=CGI_10026300; scaffold873 WUBlastX DNA_Harbinger 234861 235106 57 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Harbinger 256713 256862 74 + . . scaffold90 GLEAN mRNA 256704 258219 0.982419 + . ID=CGI_10015169; scaffold42790 WUBlastX DNA_Harbinger 184363 184527 58 - . . scaffold42790 GLEAN mRNA 181485 188091 0.999947 - . ID=CGI_10007719; scaffold1816 WUBlastX DNA_Harbinger 178787 178939 60 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_Harbinger 686277 686450 48 - . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold39268 WUBlastX DNA_Harbinger 45842 46000 71 - . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold1255 WUBlastX RC_Helitron 211554 211826 31 - . . scaffold1255 GLEAN mRNA 211548 212816 0.999998 - . ID=CGI_10018068; scaffold156 WUBlastX RC_Helitron 112621 112812 61 - . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX DNA_IS4EU 38086 38520 46 - . . . . . -1 -1 -1 . . . scaffold527 WUBlastX LINE_L1 309948 310067 47 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_L1 137506 137658 77 - . . . . . -1 -1 -1 . . . scaffold35806 WUBlastX LINE_L1-Tx1 27480 27575 29 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1 792480 792560 28 - . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX DNA_TcMar-Marin 105859 106077 48 - . . scaffold1562 GLEAN mRNA 73157 112953 0.997511 - . ID=CGI_10005776; scaffold1759 WUBlastX LTR_ERV1 49066 49641 23 + . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX LINE_Penelope 68726 68875 66 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_Penelope 140290 140619 21 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Caulimoviru 252992 253768 34 - . . scaffold1061 GLEAN mRNA 252587 259902 0.757948 - . ID=CGI_10017252; scaffold1061 WUBlastX LTR_Caulimoviru 252992 253768 34 - . . scaffold1061 GLEAN mRNA 244234 289069 0.85922 + . ID=CGI_10017251; scaffold619 WUBlastX DNA_Maverick 504451 504630 53 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_RTE-X 275647 275721 40 - . . . . . -1 -1 -1 . . . scaffold371 WUBlastX LINE_RTE-BovB 91115 91723 53 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 154209 154436 36 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 53470 53664 37 - . . scaffold4 GLEAN mRNA 42612 56029 0.999937 + . ID=CGI_10021161; scaffold43624 WUBlastX LINE_RTE-X 224358 224498 76 - . . . . . -1 -1 -1 . . . scaffold1723 WUBlastX LINE_RTE-X 18274 18510 34 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_RTE-X 145907 146122 54 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX LTR_DIRS 8057 8824 35 - . . scaffold1377 GLEAN mRNA 4634 19279 0.99195 + . ID=CGI_10008617; scaffold39986 WUBlastX LINE_L2 67564 67659 63 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LINE_CR1-L2 157738 157890 42 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold406 WUBlastX LINE_L2 440710 441252 50 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_CR1 94804 94944 60 - . . . . . -1 -1 -1 . . . scaffold1871 WUBlastX LINE_L2 141756 142205 49 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Ngaro 625697 626080 34 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Ngaro 98620 98982 62 - . . scaffold43182 GLEAN mRNA 97443 102816 0.800679 + . ID=CGI_10009200; scaffold1698 WUBlastX LTR_Gypsy 49947 50117 35 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_IS4EU 124292 124456 56 + . . scaffold43076 GLEAN mRNA 124379 125530 0.999606 + . ID=CGI_10008765; scaffold43076 WUBlastX DNA_IS4EU 124647 124808 27 + . . scaffold43076 GLEAN mRNA 124379 125530 0.999606 + . ID=CGI_10008765; scaffold490 WUBlastX DNA_Harbinger 199131 199457 81 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LTR_Gypsy 4017 4115 20 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_TcMar-Marin 260800 260982 61 + . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LINE_L1 39033 39077 35 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_L1-Tx1 1019050 1019100 20 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold41834 WUBlastX LINE_RTE-X 114410 114637 54 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-BovB 27414 27887 47 + . . . . . -1 -1 -1 . . . scaffold493 WUBlastX LINE_RTE-X 36106 36345 44 + . . scaffold493 GLEAN mRNA 33582 40988 0.999595 + . ID=CGI_10007246; scaffold42704 WUBlastX LINE_RTE-X 42384 42611 56 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX DNA_Sola 159454 159531 41 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold626 WUBlastX DNA_Sola 305267 305557 53 - . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Sola 213202 213438 86 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Sola 213527 213577 20 + . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_L1-Tx1 98266 98493 44 - . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold3 WUBlastX LINE_L1-Tx1 302008 302310 58 + . . . . . -1 -1 -1 . . . scaffold1286 WUBlastX DNA_TcMar-Tc2 31515 31649 71 - . . scaffold1286 GLEAN mRNA 25687 35466 0.660843 + . ID=CGI_10009508; scaffold593 WUBlastX LINE_L2 139415 139825 62 + . . . . . -1 -1 -1 . . . scaffold496 WUBlastX DNA_hAT 266395 266859 73 + . . scaffold496 GLEAN mRNA 181480 266652 0.248463 - . ID=CGI_10022448; scaffold496 WUBlastX DNA_hAT 266395 266859 73 + . . scaffold496 GLEAN mRNA 250677 267390 0.749037 + . ID=CGI_10022449; scaffold86 WUBlastX LINE_L1 1483133 1483288 60 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LTR_Pao 11493 11996 60 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Pao 232233 232277 22 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_hAT-Tip100 287618 287671 30 - . . . . . -1 -1 -1 . . . scaffold1056 WUBlastX LTR_DIRS 144016 144192 75 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_Crypton 140198 140767 75 - . . scaffold222 GLEAN mRNA 134195 141016 0.626444 - . ID=CGI_10007124; scaffold563 WUBlastX DNA_Crypton 523839 524261 57 - . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Gypsy 89072 89158 29 + . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Gypsy 89152 89253 24 + . . . . . -1 -1 -1 . . . C30534 WUBlastX LTR_Gypsy 4526 4585 20 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L1 387848 388021 27 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_L2 399500 399838 44 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold40150 WUBlastX LINE_L2 73386 73754 31 - . . . . . -1 -1 -1 . . . scaffold33224 WUBlastX LINE_Penelope 141 458 31 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_TcMar-Fot1 754173 754415 56 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-X 796933 797088 26 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold321 WUBlastX LINE_RTE-X 476993 477397 42 - . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold40156 WUBlastX LTR_Gypsy 82741 83196 65 + . . . . . -1 -1 -1 . . . scaffold42516 WUBlastX LINE_RTE-X 61646 61717 24 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LTR_Ngaro 78156 78728 23 - . . . . . -1 -1 -1 . . . scaffold1685 WUBlastX LINE_L1-Tx1 14738 14851 77 + . . . . . -1 -1 -1 . . . C3555 WUBlastX LTR_Pao 1 114 93 - . . . . . -1 -1 -1 . . . scaffold41732 WUBlastX LINE_CR1-L2 124312 124920 28 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 697943 698053 41 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Ngaro 190752 191162 76 + . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LTR_Gypsy 132893 133384 57 - . . scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold678 WUBlastX LTR_Gypsy 393725 394057 109 + . . . . . -1 -1 -1 . . . C4807 WUBlastX LTR_Gypsy 3 119 83 - . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX RC_Helitron 75707 75988 117 + . . scaffold1575 GLEAN mRNA 73929 76913 0.544627 + . ID=CGI_10004721; scaffold1213 WUBlastX LINE_L1-Tx1 436344 436733 90 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 149375 149638 81 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_TcMar-Fot1 422634 422927 77 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 190470 190649 91 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_RTE-X 229607 229846 50 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232375 232614 50 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold1232 WUBlastX LINE_RTE-X 208034 208216 97 + . . . . . -1 -1 -1 . . . scaffold42794 WUBlastX LINE_RTE-X 134998 135405 54 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LINE_R2 298714 299466 24 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_L1-Tx1 144775 145173 24 + . . scaffold377 GLEAN mRNA 140445 144953 0.80154 - . ID=CGI_10019404; scaffold402 WUBlastX DNA_TcMar-Tc2 269517 269942 88 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Tc2 873129 873485 101 - . . scaffold1267 GLEAN mRNA 864385 877176 0.648545 - . ID=CGI_10025174; scaffold40156 WUBlastX LINE_CR1-L2 19528 19731 41 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Copia 32013 32213 34 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX DNA_Kolobok 46396 46590 28 + . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold443 WUBlastX DNA_IS4EU 480124 480582 54 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 205961 206422 114 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX DNA_TcMar-Tc1 140991 141335 103 - . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX LINE_L2 14123 14392 92 - . . . . . -1 -1 -1 . . . scaffold1458 WUBlastX LTR_Ngaro 4214 4483 46 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_NOF 1318312 1318968 52 + . . scaffold22 GLEAN mRNA 1296873 1324907 0.541396 + . ID=CGI_10028906; scaffold1424 WUBlastX DNA_Kolobok 66632 66739 30 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_Penelope 321765 322049 92 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 235841 235987 49 + . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 60699 60833 21 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_L1-Tx1 361236 361535 41 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_L1-Tx1 270766 271020 43 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_L1-Tx1 271395 271700 36 + . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_DIRS 25727 25783 40 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold43182 WUBlastX LTR_Gypsy 130217 130717 104 + . . . . . -1 -1 -1 . . . scaffold1514 WUBlastX LTR_Gypsy 123462 123929 106 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_IS4EU 88684 88803 21 + . . scaffold97 GLEAN mRNA 72894 92330 0.60683 - . ID=CGI_10005686; scaffold42766 WUBlastX DNA_hAT-Charlie 4016 5185 33 - . . scaffold42766 GLEAN mRNA 582 5602 0.982593 - . ID=CGI_10007660; scaffold588 WUBlastX LINE_Penelope 103571 103783 71 - . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_RTE-X 286890 287057 88 - . . . . . -1 -1 -1 . . . scaffold644 WUBlastX LINE_L1-Tx1 84880 85152 62 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy 198554 198961 130 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX DNA_TcMar-Tc1 189854 190036 46 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LINE_CR1-L2 286000 286392 96 + . . . . . -1 -1 -1 . . . scaffold564 WUBlastX LTR_Gypsy 193060 193215 131 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 7696 7911 128 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LTR_Ngaro 83028 83687 75 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 767400 768227 84 - . . . . . -1 -1 -1 . . . scaffold793 WUBlastX LINE_RTE-BovB 1524 1622 101 + . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_Penelope 134777 135133 103 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LINE_RTE-X 538915 539280 40 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LINE_L1-Tx1 63793 64236 91 - . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1106 WUBlastX LINE_L1-Tx1 13929 14030 34 - . . scaffold1106 GLEAN mRNA 13450 22985 0.482682 + . ID=CGI_10002425; C35794 WUBlastX LINE_CR1 12060 12158 28 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LTR_Ngaro 83241 83444 70 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LTR_Gypsy 281499 282110 83 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold626 WUBlastX DNA_Kolobok 319988 320518 62 + . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX LINE_RTE-X 20300 20446 50 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 243815 244186 95 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_Sola 97105 97551 46 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX DNA_hAT-Tip100 108812 109015 27 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold719 WUBlastX LTR_Pao 201153 201335 29 + . . . . . -1 -1 -1 . . . scaffold42486 WUBlastX LTR_DIRS? 167196 167588 112 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_Jockey 82524 82601 20 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 986498 986995 51 + . . scaffold211 GLEAN mRNA 978840 989319 0.74015 + . ID=CGI_10026972; scaffold425 WUBlastX LINE_RTE-X 465505 465756 130 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 672781 672936 21 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_Sola 96941 97066 24 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 1323800 1324093 143 + . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LTR_Ngaro 94933 95094 22 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 147753 147887 38 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 44028 44183 46 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 43286 43480 35 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Harbinger 237709 237972 168 + . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LINE_RTE-X 1 420 91 - . . . . . -1 -1 -1 . . . scaffold35854 WUBlastX LINE_L1-Tx1 27445 28404 615 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy-Cigr 84547 84876 304 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy-Cigr 84932 86239 680 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_Penelope 281119 282030 492 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_Penelope 282035 283072 401 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L2 165517 166137 273 - . . . . . -1 -1 -1 . . . scaffold1566 WUBlastX LTR_Pao 15457 15678 114 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_CR1 287509 287772 43 + . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX LTR_Gypsy 36136 36333 82 + . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold867 WUBlastX DNA_TcMar-Tc1 268834 269403 143 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_Ngaro 187259 187543 49 - . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_L1 101975 102082 25 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold866 WUBlastX LINE_RTE-BovB 52294 52404 43 - . . . . . -1 -1 -1 . . . scaffold866 WUBlastX LINE_RTE-BovB 52409 52540 56 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 137549 137704 40 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold552 WUBlastX LINE_RTE-X 27157 27786 128 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Maverick 199703 200530 102 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_L1-Tx1 258781 260112 67 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_L1-Tx1 260160 261566 587 - . . . . . -1 -1 -1 . . . scaffold43278 WUBlastX LTR_Pao 234062 234583 300 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_RTE-X 93050 94090 295 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_RTE-BovB 120586 121431 163 - . . . . . -1 -1 -1 . . . scaffold36196 WUBlastX DNA_hAT-Tip100 22840 23301 159 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Gypsy 52889 53872 176 + . . . . . -1 -1 -1 . . . C30592 WUBlastX LINE_L2 3902 4321 129 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-X 87836 88237 138 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-X 417777 418082 175 + . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LINE_RTE-X 2240 2797 67 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy-Cigr 1040996 1041190 132 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1-Tx1 182843 185035 872 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold501 WUBlastX LINE_RTE-X 530926 533037 977 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_CR1-L2 103489 104100 100 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_CR1 293620 293910 109 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Harbinger 469637 469981 134 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-BovB 704072 704149 21 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold54 WUBlastX LTR_Gypsy-Cigr 83087 83428 115 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold1507 WUBlastX DNA_hAT-Tip100 25102 26775 1238 - . . . . . -1 -1 -1 . . . scaffold1835 WUBlastX LINE_RTE-X 403375 405798 1059 - . . . . . -1 -1 -1 . . . scaffold686 WUBlastX LTR_Ngaro 54584 54904 59 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_En-Spm 1026649 1027077 41 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX DNA_TcMar-Marin 77231 77383 22 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 800297 800797 189 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L1 20431 20874 151 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold43608 WUBlastX LINE_RTE-X 230990 231430 97 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_RTE-X 343414 343836 132 + . . scaffold334 GLEAN mRNA 333257 357250 0.999478 + . ID=CGI_10025933; scaffold86 WUBlastX LTR_Pao 1494078 1494398 332 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_IS4EU 1145507 1145677 91 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX DNA_TcMar-Marin 427033 427191 47 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX DNA_TcMar-Marin 427439 427753 93 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1 126661 126993 103 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_PiggyBac 24094 24849 163 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1-Tx1 190279 190581 162 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold33518 WUBlastX DNA_TcMar-Tc1 2766 2888 56 + . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LTR_Gypsy 95754 96299 34 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_L2 253968 254294 91 - . . scaffold504 GLEAN mRNA 245472 293737 0.367349 + . ID=CGI_10016028; scaffold504 WUBlastX LINE_L2 254354 256138 1108 - . . scaffold504 GLEAN mRNA 245472 293737 0.367349 + . ID=CGI_10016028; scaffold41900 WUBlastX LTR_DIRS 65154 65867 45 + . . . . . -1 -1 -1 . . . scaffold42960 WUBlastX LTR_Ngaro 92371 92502 102 - . . . . . -1 -1 -1 . . . scaffold42960 WUBlastX LTR_Ngaro 92517 92762 77 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-BovB 14905 15474 54 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold142 WUBlastX DNA_TcMar-Marin 96413 96592 119 + . . . . . -1 -1 -1 . . . scaffold40744 WUBlastX DNA_Sola 74878 75123 51 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_L1-Tx1 886641 887588 20 - . . scaffold79 GLEAN mRNA 880710 892247 1 + . ID=CGI_10024653; scaffold298 WUBlastX LINE_L1-Tx1 270805 270900 59 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 20566 20703 31 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 65737 66063 62 + . . . . . -1 -1 -1 . . . C22542 WUBlastX LINE_L1 1161 1622 92 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 608777 608914 35 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 141229 141570 91 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX DNA_Sola 240416 240517 34 - . . scaffold695 GLEAN mRNA 240354 243330 0.990093 - . ID=CGI_10023276; scaffold678 WUBlastX LINE_L2 590530 590736 126 + . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_Crypton 296051 296344 96 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_Crypton 296388 297038 93 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX DNA_Crypton 9909 10280 209 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_Harbinger 200900 201280 165 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_Penelope 189633 190298 218 - . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LINE_RTE-BovB 81990 82298 31 + . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX LINE_RTE-X 1297 2019 107 + . . scaffold1373 GLEAN mRNA 600 7221 1 - . ID=CGI_10007903; scaffold896 WUBlastX DNA_Sola 33410 33640 51 + . . . . . -1 -1 -1 . . . C25176 WUBlastX LINE_RTE-X 1148 1666 152 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX DNA_TcMar-Tc1 396847 397074 87 + . . scaffold942 GLEAN mRNA 390660 406366 0.734087 - . ID=CGI_10019170; scaffold165 WUBlastX LTR_Gypsy 112520 113827 971 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold1315 WUBlastX LTR_DIRS 518349 520478 1086 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_CR1-L2 272268 272792 169 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LTR_Gypsy 35240 36358 62 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LTR_Gypsy 268651 269646 201 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_RTE-X 548530 548934 135 - . . . . . -1 -1 -1 . . . scaffold39960 WUBlastX LTR_Gypsy 21391 24711 1780 - . . . . . -1 -1 -1 . . . scaffold41896 WUBlastX LINE_CR1-L2 30620 30835 28 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-BovB 452677 452889 142 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy 168626 169135 98 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold1896 WUBlastX LINE_L1 161408 161488 34 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_PiggyBac 281926 282408 93 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold337 WUBlastX LINE_Proto2 235203 235520 47 - . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LTR_Pao 311606 311746 127 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold596 WUBlastX DNA_TcMar-Tc1 213767 214351 156 - . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold1512 WUBlastX LTR_Gypsy 109814 109969 25 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; scaffold1362 WUBlastX DNA_TcMar-Marin 583937 584335 237 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LTR_Ngaro 87842 88066 100 - . . . . . -1 -1 -1 . . . scaffold32488 WUBlastX LINE_CR1 629 3289 1432 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 515895 516275 274 - . . . . . -1 -1 -1 . . . scaffold1429 WUBlastX DNA_IS4EU 14565 15194 234 - . . scaffold1429 GLEAN mRNA 13458 17611 0.727726 + . ID=CGI_10001355; scaffold619 WUBlastX DNA_hAT-Ac 462179 462826 127 - . . . . . -1 -1 -1 . . . C30458 WUBlastX LINE_L1 5525 5845 96 + . . C30458 GLEAN mRNA 986 6010 1 - . ID=CGI_10000625; scaffold1149 WUBlastX LINE_L1-Tx1 119352 123152 1805 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 622690 622971 56 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 623012 623305 253 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LTR_Gypsy 21968 22204 29 + . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX LINE_RTE-X 61515 61727 74 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_RTE-X 129970 130338 106 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold550 WUBlastX LTR_Gypsy 195197 195304 24 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold22 WUBlastX LINE_L1-Tx1 271306 272304 179 + . . scaffold22 GLEAN mRNA 264482 280480 0.644868 - . ID=CGI_10028838; scaffold1203 WUBlastX LINE_RTE-X 145237 146424 204 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LTR_Gypsy-Troyk 185801 186283 180 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LTR_Gypsy-Troyk 186244 186429 99 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX DNA_MuDR 57173 57250 31 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX DNA_MuDR 57551 57859 155 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_Penelope 123775 124842 212 + . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LTR_Gypsy 89660 90427 793 - . . . . . -1 -1 -1 . . . scaffold41772 WUBlastX LTR_Gypsy-Cigr 99799 100005 108 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 100700 101011 56 - . . . . . -1 -1 -1 . . . scaffold148 WUBlastX DNA_TcMar-Fot1 71234 71923 186 + . . . . . -1 -1 -1 . . . scaffold39212 WUBlastX DNA_Sola 46480 47265 76 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold37740 WUBlastX DNA_NOF 11054 11374 251 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold37740 WUBlastX DNA_NOF 12057 12155 34 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold1301 WUBlastX LINE_RTE-X 1368778 1369509 275 + . . . . . -1 -1 -1 . . . scaffold35430 WUBlastX LINE_RTE-X 12276 13127 254 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Gypsy-Cigr 175563 176684 327 - . . . . . -1 -1 -1 . . . scaffold42604 WUBlastX LTR_DIRS 102968 103453 333 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX DNA_P 182486 183034 152 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX LINE_L1-Tx1 48543 48929 291 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 116848 116925 42 + . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX LINE_RTE-X 86557 86922 154 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold1101 WUBlastX LINE_L2 725034 725516 183 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_Harbinger 979421 979681 145 - . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold58 WUBlastX LTR_Pao 388767 389228 262 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_CR1-L2 355984 356304 132 + . . . . . -1 -1 -1 . . . scaffold33594 WUBlastX LTR_Ngaro 14309 14872 290 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_TcMar-Tc1 755847 756353 320 - . . . . . -1 -1 -1 . . . scaffold292 WUBlastX LTR_Pao 17968 18999 370 - . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold501 WUBlastX LTR_Gypsy 724362 724787 47 + . . scaffold501 GLEAN mRNA 690007 761178 0.748134 - . ID=CGI_10027530; scaffold1160 WUBlastX LTR_Gypsy 161338 162303 95 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX RC_Helitron 325370 325663 41 + . . . . . -1 -1 -1 . . . scaffold36790 WUBlastX LTR_Ngaro 26094 26501 198 + . . scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; C26626 WUBlastX LTR_Pao 2354 2485 47 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_Sola 307585 307968 138 - . . . . . -1 -1 -1 . . . C31144 WUBlastX LTR_Gypsy 7520 8725 416 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 38722 40053 242 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_L1 6664 7155 238 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 331135 331722 173 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1-Tx1 110640 111476 226 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 370265 370867 388 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_DIRS 809263 809688 237 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_DIRS 809700 810050 138 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Ngaro 7073 7369 163 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Ngaro 39844 40512 238 - . . . . . -1 -1 -1 . . . scaffold40006 WUBlastX DNA_Harbinger 8643 8945 146 + . . . . . -1 -1 -1 . . . scaffold40006 WUBlastX DNA_Harbinger 8956 9360 205 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_RTE-X 168060 168386 139 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_TcMar-Tc2 237690 238346 419 - . . . . . -1 -1 -1 . . . scaffold37790 WUBlastX DNA_TcMar-Tc1 12512 13195 205 + . . . . . -1 -1 -1 . . . scaffold37790 WUBlastX DNA_TcMar-Tc1 13288 13425 49 + . . . . . -1 -1 -1 . . . scaffold40868 WUBlastX LINE_RTE-X 65946 66893 341 + . . . . . -1 -1 -1 . . . scaffold110 WUBlastX LINE_RTE-BovB 92099 92503 75 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_CR1-L2 298323 299138 91 + . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_IS4EU 95933 96994 363 + . . scaffold751 GLEAN mRNA 94947 97024 0.999415 + . ID=CGI_10017382; scaffold1452 WUBlastX DNA_hAT-Ac 14596 14745 55 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_L1 72463 72984 134 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_L1 73016 73420 242 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-BovB 647014 647877 354 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold343 WUBlastX LINE_RTE-BovB 647891 648127 99 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold664 WUBlastX LTR_DIRS 46962 48224 443 - . . . . . -1 -1 -1 . . . scaffold41390 WUBlastX DNA_TcMar-Pogo 100328 101017 208 - . . . . . -1 -1 -1 . . . scaffold41390 WUBlastX DNA_TcMar-Pogo 101013 101285 250 - . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX LTR_Ngaro 33964 34440 232 - . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX LTR_Ngaro 34383 34631 191 - . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX LTR_Ngaro 34638 34811 80 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 330818 331129 43 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_L1-Tx1 577768 578127 143 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_L1-Tx1 578236 578607 159 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_CR1-L2 22156 22266 91 - . . . . . -1 -1 -1 . . . scaffold32666 WUBlastX DNA_Crypton 11440 12225 499 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 328523 329119 208 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold43500 WUBlastX LINE_L1-Tx1 98373 98681 38 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_L1 172667 172867 58 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 959605 959985 88 - . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LINE_L1-Tx1 12410 12907 236 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1-Tx1 736331 736513 130 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1-Tx1 736969 737766 288 + . . . . . -1 -1 -1 . . . scaffold39412 WUBlastX LINE_RTE-X 22886 23230 77 - . . . . . -1 -1 -1 . . . C26094 WUBlastX DNA_hAT-hATw 2 604 487 - . . . . . -1 -1 -1 . . . C26094 WUBlastX DNA_hAT-hATw 582 872 156 - . . . . . -1 -1 -1 . . . scaffold1696 WUBlastX DNA_TcMar-Marin 25043 25447 253 - . . . . . -1 -1 -1 . . . scaffold1696 WUBlastX DNA_TcMar-Marin 26110 26295 93 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_CR1 46299 46793 83 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 339295 340662 430 - . . scaffold343 GLEAN mRNA 339184 340140 0.999999 - . ID=CGI_10021750; scaffold38290 WUBlastX LINE_L2 26641 27420 553 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Gypsy 370231 371232 648 - . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1-Tx1 162518 162814 74 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_L2 450264 450545 69 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1 86653 87069 107 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L1-Tx1 638117 638524 78 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L1-Tx1 638608 639432 520 - . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX LINE_L1 40444 41259 409 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold39972 WUBlastX LINE_L1 42046 42297 29 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold632 WUBlastX LINE_CR1-L2 511602 511799 98 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold415 WUBlastX LTR_Gypsy 74218 74691 79 - . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Gypsy 107565 108578 327 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_RTE-X 130736 130936 122 - . . scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold1900 WUBlastX LINE_L1-Tx1 391200 391724 286 + . . scaffold1900 GLEAN mRNA 384856 401407 0.999777 - . ID=CGI_10017347; scaffold1900 WUBlastX LINE_L1-Tx1 391739 393091 233 + . . scaffold1900 GLEAN mRNA 384856 401407 0.999777 - . ID=CGI_10017347; scaffold509 WUBlastX LINE_L1-Tx1 256043 256222 59 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold41466 WUBlastX LINE_L2 41532 42326 417 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_L2 236614 237273 196 - . . . . . -1 -1 -1 . . . C26824 WUBlastX RC_Helitron 2419 4215 747 + . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LINE_L1-Tx1 100436 101128 161 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold77 WUBlastX DNA_hAT-hATw 657104 658756 651 + . . scaffold77 GLEAN mRNA 654725 664026 0.999581 + . ID=CGI_10027987; scaffold38650 WUBlastX LINE_L1-Tx1 56851 57210 237 - . . . . . -1 -1 -1 . . . C19752 WUBlastX LTR_Gypsy 689 883 156 - . . . . . -1 -1 -1 . . . C25652 WUBlastX LTR_Gypsy 2368 3072 645 + . . . . . -1 -1 -1 . . . C25652 WUBlastX LTR_Gypsy 3047 3262 185 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_RTE-X 1041 1610 89 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_RTE-X 2760 2891 78 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 2896 3327 197 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 3315 4439 55 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold416 WUBlastX DNA_Harbinger 330941 331138 30 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX LTR_Ngaro 44029 45051 499 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX LTR_Ngaro 45053 45331 183 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX LTR_Ngaro 45336 45602 98 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LTR_Pao 320019 320426 184 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 123670 124986 905 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy 195546 195761 27 - . . . . . -1 -1 -1 . . . scaffold665 WUBlastX LINE_RTE-X 113225 113980 160 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 425974 427308 427 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 427307 428110 143 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 428145 428270 34 + . . . . . -1 -1 -1 . . . C27700 WUBlastX LTR_Gypsy-Cigr 12 1541 874 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_L1-Tx1 136657 136809 68 + . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LTR_Copia 101947 102120 22 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 4729 4827 26 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 71807 72508 39 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_CR1-L2 450595 450819 72 - . . scaffold63 GLEAN mRNA 449094 452628 1 + . ID=CGI_10017284; scaffold1097 WUBlastX LINE_L2 612662 612925 64 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_CR1 582473 582724 63 - . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX LINE_L2 34050 34373 68 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_CR1 1575772 1575804 20 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_L2 834833 835276 33 - . . scaffold145 GLEAN mRNA 832787 840125 0.97533 - . ID=CGI_10026566; scaffold204 WUBlastX DNA_TcMar-Fot1 222503 222736 46 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LTR_Gypsy 144110 144502 78 + . . scaffold1741 GLEAN mRNA 144116 145129 0.999285 + . ID=CGI_10024025; scaffold489 WUBlastX LTR_Gypsy 530759 531358 59 - . . . . . -1 -1 -1 . . . scaffold41480 WUBlastX DNA_Crypton 114599 114823 66 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_Crypton 354782 355231 68 + . . scaffold364 GLEAN mRNA 354713 358226 0.333666 + . ID=CGI_10022692; scaffold315 WUBlastX LINE_L2 304265 304489 77 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold38494 WUBlastX LINE_L2 54841 55077 75 + . . scaffold38494 GLEAN mRNA 8485 55173 0.992441 + . ID=CGI_10002806; scaffold1328 WUBlastX LTR_DIRS 212859 213029 41 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LTR_DIRS 70587 71027 83 - . . . . . -1 -1 -1 . . . scaffold814 WUBlastX LTR_DIRS 73867 73989 71 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 674402 674506 70 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 87164 87475 22 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy 266331 266954 26 - . . scaffold583 GLEAN mRNA 266361 266834 0.53608 - . ID=CGI_10023615; scaffold4 WUBlastX LTR_Gypsy 215854 215997 28 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_Gypsy 129814 130011 29 - . . scaffold1321 GLEAN mRNA 124908 130065 0.986166 - . ID=CGI_10010661; scaffold1214 WUBlastX LTR_Gypsy 86781 86873 34 - . . . . . -1 -1 -1 . . . scaffold292 WUBlastX LINE_Jockey 4666 5391 28 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold594 WUBlastX LINE_L1-Tx1 269553 269660 61 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_L1 110896 111393 43 + . . . . . -1 -1 -1 . . . scaffold864 WUBlastX DNA_TcMar-Stowa 2452 2757 20 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_L2 285315 285380 20 + . . . . . -1 -1 -1 . . . scaffold416 WUBlastX LINE_Penelope 16545 16664 88 - . . scaffold416 GLEAN mRNA 11110 24454 0.716094 - . ID=CGI_10014735; scaffold1711 WUBlastX LINE_Penelope 189520 189852 31 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 932723 932932 57 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_RTE-X 415250 415348 53 - . . . . . -1 -1 -1 . . . scaffold696 WUBlastX LINE_RTE-X 20753 20911 57 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_RTE-X 35684 35854 67 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_RTE-X 570938 571297 36 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LINE_RTE-X 262355 262504 41 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_RTE-X 1842 2060 46 - . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_RTE-X 307400 307654 49 - . . scaffold44054 GLEAN mRNA 306696 317315 0.999734 + . ID=CGI_10016171; scaffold223 WUBlastX LINE_RTE-BovB 232262 232567 59 + . . scaffold223 GLEAN mRNA 221696 232581 0.850648 + . ID=CGI_10012918; scaffold853 WUBlastX LINE_Proto2 55450 55785 54 - . . . . . -1 -1 -1 . . . scaffold37540 WUBlastX LINE_Proto2 1 465 40 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX DNA_PiggyBac 14565 14747 42 + . . scaffold1570 GLEAN mRNA 10930 17344 0.990546 + . ID=CGI_10002599; scaffold581 WUBlastX DNA_Sola 188844 189065 78 - . . scaffold581 GLEAN mRNA 181853 194211 0.517038 - . ID=CGI_10013740; scaffold934 WUBlastX RC_Helitron 271497 271604 45 + . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold1052 WUBlastX LINE_L2 79733 80020 93 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L2 401497 401757 75 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; C25496 WUBlastX LINE_CR1 2006 2536 27 + . . C25496 GLEAN mRNA 1853 2074 0.998748 + . ID=CGI_10000243; scaffold1032 WUBlastX LINE_CR1-L2 90858 90917 20 - . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L2 6126 6428 70 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Pao 294755 294913 31 + . . . . . -1 -1 -1 . . . scaffold1653 WUBlastX DNA_TcMar-ISRm1 29753 29953 97 - . . scaffold1653 GLEAN mRNA 29747 39764 0.980452 - . ID=CGI_10002252; scaffold1272 WUBlastX LTR_Ngaro 39539 39709 38 + . . . . . -1 -1 -1 . . . scaffold38382 WUBlastX LINE_CR1 20271 20411 43 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Gypsy 269916 270824 47 + . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold337 WUBlastX LTR_Gypsy 330489 331268 47 - . . . . . -1 -1 -1 . . . scaffold35084 WUBlastX LTR_Gypsy 11172 11444 75 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 205588 205800 76 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold35640 WUBlastX LTR_Gypsy 13869 14126 56 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_Kolobok-IS4 297154 297297 26 + . . . . . -1 -1 -1 . . . C35840 WUBlastX DNA_Harbinger 3715 3924 29 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold191 WUBlastX LINE_Penelope 578145 578312 67 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold39412 WUBlastX LINE_L2 25309 25353 22 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_TcMar-Marin 228946 229179 67 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_L1 207526 207780 65 - . . scaffold1350 GLEAN mRNA 200904 214641 0.523236 - . ID=CGI_10017304; scaffold1100 WUBlastX LINE_L1 85744 86082 66 + . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LINE_Proto2 35404 35715 88 + . . scaffold1810 GLEAN mRNA 35071 35736 0.59015 + . ID=CGI_10007557; scaffold43818 WUBlastX LINE_RTE-BovB 32607 32792 81 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-BovB 445899 446036 47 - . . scaffold57 GLEAN mRNA 444980 452251 1 + . ID=CGI_10020561; scaffold1213 WUBlastX LINE_RTE-X 51920 52234 31 + . . scaffold1213 GLEAN mRNA 37787 69926 0.920174 - . ID=CGI_10027426; scaffold1069 WUBlastX LINE_RTE-BovB 826 1008 77 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_RTE-X 64002 64271 23 - . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_RTE-X 15022 15234 46 + . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-BovB 275468 275677 45 - . . scaffold1877 GLEAN mRNA 260700 282474 0.629158 + . ID=CGI_10011961; scaffold42930 WUBlastX LINE_RTE-X 80168 80380 48 - . . . . . -1 -1 -1 . . . C27792 WUBlastX LINE_RTE-X 1994 2209 63 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LINE_RTE-X 540050 540271 33 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-X 305848 306309 36 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_RTE-X 130423 130551 35 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy 472337 472462 68 - . . . . . -1 -1 -1 . . . scaffold36158 WUBlastX LINE_L1-Tx1 18432 18671 37 - . . scaffold36158 GLEAN mRNA 15216 24760 0.784797 + . ID=CGI_10001808; scaffold1473 WUBlastX LINE_L1-Tx1 15282 15560 71 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold86 WUBlastX LINE_L1-Tx1 829560 829844 37 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1-Tx1 1194408 1194506 20 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_Gypsy 821799 822452 41 - . . scaffold1583 GLEAN mRNA 822207 822614 0.999365 - . ID=CGI_10025843; scaffold1825 WUBlastX LINE_CR1-L2 166811 167113 43 - . . scaffold1825 GLEAN mRNA 165468 177148 0.695303 - . ID=CGI_10011147; scaffold1327 WUBlastX LINE_CR1-L2 348727 348924 77 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_CR1-L2 729793 729870 22 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LINE_CR1-L2 483569 483616 32 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_TcMar-Fot1 721221 721598 45 + . . . . . -1 -1 -1 . . . scaffold314 WUBlastX LTR_Gypsy 81375 81563 29 + . . . . . -1 -1 -1 . . . scaffold35950 WUBlastX DNA_TcMar-Tc1 27959 28087 66 + . . . . . -1 -1 -1 . . . scaffold35950 WUBlastX DNA_TcMar-Tc1 28124 28348 26 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_DIRS 129754 129930 57 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LTR_Ngaro 159889 160038 89 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_Ngaro 286262 286441 27 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 473610 474002 29 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 1098817 1098972 78 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_L1-Tx1 49134 49352 34 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_Penelope 72685 73233 65 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_RTE-X 112096 112281 31 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Maverick 48018 48251 84 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_TcMar-Marin 210247 210537 65 + . . . . . -1 -1 -1 . . . scaffold41766 WUBlastX DNA_TcMar-Tc1 86075 86191 91 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L2 474850 475257 88 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_CR1 81283 81591 92 + . . . . . -1 -1 -1 . . . scaffold36196 WUBlastX DNA_hAT-Tip100 5367 5696 84 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 102902 103078 24 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_TcMar-Fot1 696494 696802 90 - . . . . . -1 -1 -1 . . . C34630 WUBlastX DNA_Kolobok 15731 15814 38 + . . . . . -1 -1 -1 . . . C34630 WUBlastX DNA_Kolobok 16366 16458 33 + . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_L1-Tx1 78923 79081 94 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LINE_L1-Tx1 177219 177725 64 + . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX LINE_L1-Tx1 42120 42260 77 + . . scaffold1834 GLEAN mRNA 40709 65850 0.846288 + . ID=CGI_10016651; scaffold1834 WUBlastX LINE_L1-Tx1 42704 42802 24 + . . scaffold1834 GLEAN mRNA 40709 65850 0.846288 + . ID=CGI_10016651; scaffold1715 WUBlastX DNA_PiggyBac 458620 459192 88 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1-Tx1 148510 149010 54 + . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_L1-Tx1 206924 207049 20 - . . scaffold1157 GLEAN mRNA 206927 207331 0.618241 + . ID=CGI_10011219; scaffold1500 WUBlastX DNA_hAT-Tip100 87188 87730 69 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 603161 603517 104 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_CR1 574663 574992 100 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_Gypsy 120001 120804 86 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1606452 1606646 31 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold1101 WUBlastX DNA_Harbinger 46536 46628 21 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 487076 487585 109 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_R2-Hero 96646 96738 24 + . . scaffold789 GLEAN mRNA 76148 97050 0.642884 - . ID=CGI_10017181; scaffold1894 WUBlastX LINE_L1-Tx1 255432 255644 72 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX DNA_Kolobok-Hyd 55373 55843 44 - . . scaffold1554 GLEAN mRNA 55077 66633 0.275944 - . ID=CGI_10017356; scaffold1554 WUBlastX DNA_Kolobok-Hyd 56561 56698 30 - . . scaffold1554 GLEAN mRNA 55077 66633 0.275944 - . ID=CGI_10017356; scaffold1024 WUBlastX DNA_PiggyBac 1060899 1061210 107 - . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LINE_RTE-X 21784 21909 40 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-X 55208 55444 26 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX DNA_Sola 277078 277413 107 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 195164 195334 38 + . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX LINE_L1-Tx1 113084 113272 60 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold413 WUBlastX LINE_CR1 234113 234682 21 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_CR1 150229 150438 59 + . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_L2 69324 69548 102 - . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LINE_CR1-L2 19073 19282 30 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_hAT-hATw 127096 127929 29 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_Harbinger 482622 482912 20 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX DNA_MuDR 44936 45187 85 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX DNA_PiggyBac 62492 63226 55 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_PiggyBac 512102 512206 30 - . . scaffold1221 GLEAN mRNA 505287 514877 0.549954 - . ID=CGI_10019748; scaffold433 WUBlastX LINE_RTE-X 1240642 1240782 21 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1240802 1240867 60 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 213410 213829 24 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 359769 360164 58 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L2 588299 588859 79 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 307677 307892 48 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold998 WUBlastX LTR_Gypsy-Cigr 145260 145757 71 - . . . . . -1 -1 -1 . . . scaffold998 WUBlastX LTR_Gypsy-Cigr 146157 146279 31 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_DIRS 463178 463921 118 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold43146 WUBlastX DNA_Kolobok-IS4 104181 104381 97 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold39966 WUBlastX LTR_Gypsy 10854 10925 20 + . . scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold257 WUBlastX LINE_Penelope 1189637 1189855 66 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_L2 149927 150487 101 - . . scaffold780 GLEAN mRNA 138989 166483 0.986281 + . ID=CGI_10024719; scaffold156 WUBlastX LINE_RTE-X 918628 919074 72 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1080178 1080270 56 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold619 WUBlastX LINE_L2 764482 764523 21 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 373485 373754 41 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_RTE-X 64110 64382 50 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-X 220831 221001 86 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_RTE-X 216627 216926 80 - . . . . . -1 -1 -1 . . . scaffold1716 WUBlastX LINE_RTE-X 6057 6335 96 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_DIRS 14947 15255 113 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_RTE-X 699498 699818 79 - . . scaffold54 GLEAN mRNA 691256 701357 0.651135 + . ID=CGI_10023690; scaffold771 WUBlastX LINE_L2 317965 318045 57 + . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_L2 39643 40167 92 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 118004 118312 120 - . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX DNA_hAT-Ac 143160 143498 76 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_R2-Hero 291313 291933 103 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_R2-Hero 602411 603031 103 + . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_NOF? 31839 32399 41 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1 237109 237339 44 - . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_L1 79838 80011 58 + . . . . . -1 -1 -1 . . . scaffold1335 WUBlastX LINE_Penelope 14980 15543 75 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold1267 WUBlastX LINE_RTE-X 764643 764729 32 + . . . . . -1 -1 -1 . . . scaffold1286 WUBlastX LINE_CR1 114146 114373 99 - . . scaffold1286 GLEAN mRNA 98601 123345 0.396375 - . ID=CGI_10009514; scaffold1589 WUBlastX LTR_Gypsy 212534 212584 25 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Penelope 244297 244599 149 - . . scaffold86 GLEAN mRNA 234944 244974 0.760974 - . ID=CGI_10028144; scaffold1385 WUBlastX LINE_RTE-X 268949 269323 88 - . . scaffold1385 GLEAN mRNA 265685 273877 0.994335 - . ID=CGI_10013848; scaffold35014 WUBlastX DNA_PiggyBac 14617 14832 55 + . . scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold599 WUBlastX DNA_Maverick 73480 73728 127 + . . . . . -1 -1 -1 . . . scaffold564 WUBlastX LINE_L1-Tx1 9816 9986 47 + . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_L2 353635 353931 105 - . . . . . -1 -1 -1 . . . scaffold1664 WUBlastX LTR_Ngaro 43411 43950 61 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LTR_Ngaro 224666 225205 61 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX RC_Helitron 84872 85507 178 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX DNA_Harbinger 99998 100273 122 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Kolobok 493296 493439 87 - . . scaffold267 GLEAN mRNA 493275 498578 0.739869 - . ID=CGI_10018314; scaffold1222 WUBlastX DNA_TcMar-Tc1 129120 129473 52 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_CR1-L2 177855 178190 80 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 308308 308673 40 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Gypsy 255868 255969 25 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 1059099 1060418 935 + . . scaffold1423 GLEAN mRNA 1057538 1060967 0.980388 + . ID=CGI_10025454; scaffold1845 WUBlastX LINE_RTE-X 223589 225502 745 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Ngaro 7244 8863 924 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX DNA_Sola 201599 202540 412 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX DNA_Sola 203688 204248 164 + . . scaffold926 GLEAN mRNA 203498 204323 0.999996 + . ID=CGI_10011367; scaffold339 WUBlastX LTR_Gypsy 27925 28170 74 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX RC_Helitron 1298680 1299174 148 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX RC_Helitron 1299240 1301519 851 - . . . . . -1 -1 -1 . . . scaffold1286 WUBlastX LINE_CR1 4412 4600 36 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold1286 WUBlastX LINE_CR1 4826 5056 90 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; C30072 WUBlastX LINE_L2 2601 2966 95 + . . . . . -1 -1 -1 . . . scaffold838 WUBlastX LTR_Gypsy 25645 26073 103 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_Penelope 488485 488946 113 + . . . . . -1 -1 -1 . . . scaffold30814 WUBlastX LINE_RTE-X 7661 7807 69 - . . scaffold30814 GLEAN mRNA 3529 8232 0.998023 - . ID=CGI_10000671; scaffold1058 WUBlastX LINE_RTE-X 14302 14664 27 - . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX LINE_RTE-BovB 86569 86988 29 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold1736 WUBlastX LINE_RTE-X 627585 627815 82 - . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold914 WUBlastX LINE_CR1 384548 385525 406 + . . scaffold914 GLEAN mRNA 383322 392651 0.969071 - . ID=CGI_10018890; scaffold914 WUBlastX LINE_CR1 386245 386994 625 + . . scaffold914 GLEAN mRNA 383322 392651 0.969071 - . ID=CGI_10018890; scaffold1021 WUBlastX RC_Helitron 694086 695504 553 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold198 WUBlastX LTR_Gypsy 552572 553378 136 + . . scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold87 WUBlastX LTR_Pao 18932 19234 221 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX DNA_TcMar-Tc1 135445 135600 31 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 71030 71158 65 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_CR1-L2 1087725 1087898 97 + . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold980 WUBlastX LINE_L2 78927 79571 108 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold1098 WUBlastX LTR_Gypsy 159292 159342 21 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX RC_Helitron 191857 192408 123 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_Harbinger 254873 255094 30 + . . . . . -1 -1 -1 . . . scaffold1548 WUBlastX LINE_Penelope 5155 5508 152 - . . . . . -1 -1 -1 . . . scaffold37858 WUBlastX LINE_RTE-X 5 517 87 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 1689635 1690276 36 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Gypsy 416891 417298 192 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_RTE-X 162846 163613 101 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_L2 292483 293106 379 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_L2 293079 293540 306 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_L2 293489 293905 230 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_L2 293902 294249 78 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_L2 294255 294521 38 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Gypsy 210447 210983 88 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_Harbinger 86634 86822 75 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 90590 90736 104 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold847 WUBlastX LINE_L1 705725 706129 100 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold40960 WUBlastX LINE_RTE-X 22471 22539 60 - . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LINE_RTE-X 8221 8706 115 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LINE_RTE-X 115691 115837 64 + . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_RTE-BovB 3810 3860 21 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-X 1368711 1369073 163 + . . . . . -1 -1 -1 . . . scaffold40346 WUBlastX DNA_TcMar-Tc1 24273 25001 114 - . . scaffold40346 GLEAN mRNA 23217 29434 0.99961 - . ID=CGI_10004041; scaffold422 WUBlastX LTR_Pao 548724 551546 1092 - . . . . . -1 -1 -1 . . . C33952 WUBlastX RC_Helitron 5 3604 1051 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_L1-Tx1 703018 703929 251 + . . scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold839 WUBlastX LINE_L1-Tx1 84118 85494 666 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold839 WUBlastX LINE_L1-Tx1 86717 87676 185 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold448 WUBlastX DNA_Academ 722829 724295 122 - . . . . . -1 -1 -1 . . . scaffold42508 WUBlastX LTR_Copia 135483 135812 169 + . . scaffold42508 GLEAN mRNA 132335 147112 0.99201 - . ID=CGI_10007033; scaffold1179 WUBlastX LINE_L2 143210 143629 117 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L2 428951 429319 138 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Ngaro 89625 89816 33 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold257 WUBlastX LTR_Gypsy 305236 305292 22 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 89200 89310 29 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold38650 WUBlastX LTR_DIRS 53682 53819 42 - . . . . . -1 -1 -1 . . . C35532 WUBlastX LINE_RTE-BovB 23561 24331 456 + . . . . . -1 -1 -1 . . . C29968 WUBlastX LINE_L2 2563 3807 46 + . . . . . -1 -1 -1 . . . C36680 WUBlastX LINE_CR1 8669 8938 92 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C30022 WUBlastX LTR_Pao 1442 2236 56 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 101288 101620 47 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LTR_Ngaro 154361 155143 80 - . . . . . -1 -1 -1 . . . scaffold415 WUBlastX LTR_Gypsy 81211 81408 145 - . . . . . -1 -1 -1 . . . scaffold193 WUBlastX LINE_R2-Hero 171803 172198 153 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_IS4EU 88758 89123 145 + . . scaffold97 GLEAN mRNA 72894 92330 0.60683 - . ID=CGI_10005686; scaffold1889 WUBlastX LINE_L1 101710 102117 28 - . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LINE_L2 12829 13287 22 - . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 26998 28365 98 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 29906 30409 222 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 30471 32048 341 + . . . . . -1 -1 -1 . . . scaffold41650 WUBlastX LINE_L2 5943 6074 35 - . . scaffold41650 GLEAN mRNA 2732 34982 0.998592 + . ID=CGI_10005337; scaffold1322 WUBlastX LTR_Ngaro 588359 588862 189 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold1698 WUBlastX LTR_Gypsy 40836 41888 168 - . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX DNA_Harbinger 51178 51714 161 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LTR_DIRS 145203 145346 47 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS 145366 145617 96 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS 145859 146263 24 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold748 WUBlastX LTR_Pao 12957 13334 225 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Gypsy 138663 139118 254 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Gypsy 140130 141374 842 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Gypsy 141479 141829 268 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX DNA_Harbinger 70200 70847 146 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX DNA_Kolobok-IS4 58096 58224 23 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LINE_Penelope 123723 124493 158 - . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 19366 20637 177 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-X 23239 23739 104 - . . . . . -1 -1 -1 . . . scaffold38674 WUBlastX LINE_L1-Tx1 50046 50387 55 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LINE_L1-Tx1 150655 150732 31 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Gypsy 79446 81413 1145 - . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LTR_DIRS 116545 118485 1275 - . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LTR_DIRS 118531 119067 243 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Gypsy-Cigr 220663 222321 838 + . . . . . -1 -1 -1 . . . scaffold36664 WUBlastX LTR_Gypsy 24346 25263 169 + . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX LINE_R2-Hero 266453 267079 143 - . . scaffold43574 GLEAN mRNA 264140 268252 0.775763 + . ID=CGI_10010886; scaffold1759 WUBlastX LINE_RTE-X 76970 77392 123 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_RTE-BovB 114824 115075 73 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy-Cigr 567173 568219 286 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy-Cigr 567173 568219 286 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold596 WUBlastX LINE_L1-Tx1 3501 6374 1394 + . . . . . -1 -1 -1 . . . C30988 WUBlastX LINE_L2 5569 6528 82 + . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LINE_CR1 95109 96599 132 + . . . . . -1 -1 -1 . . . scaffold139 WUBlastX LTR_DIRS 3945 4616 100 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_TcMar-Marin 1060670 1060990 117 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 620181 620519 195 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LTR_Ngaro 73403 74212 160 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold41568 WUBlastX LINE_L1-Tx1 58658 58687 22 + . . . . . -1 -1 -1 . . . scaffold194 WUBlastX LTR_Gypsy 94729 95004 87 + . . scaffold194 GLEAN mRNA 88923 103343 0.864939 + . ID=CGI_10011059; scaffold194 WUBlastX LTR_Gypsy 95896 96330 244 + . . scaffold194 GLEAN mRNA 88923 103343 0.864939 + . ID=CGI_10011059; scaffold194 WUBlastX LTR_Gypsy 96338 98047 1420 + . . scaffold194 GLEAN mRNA 88923 103343 0.864939 + . ID=CGI_10011059; scaffold146 WUBlastX LINE_L1-Tx1 590579 591442 402 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L1-Tx1 591537 593666 724 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 376776 377243 175 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX LINE_RTE-BovB 58529 58783 61 - . . . . . -1 -1 -1 . . . scaffold891 WUBlastX LINE_RTE-BovB 58791 58904 69 - . . . . . -1 -1 -1 . . . scaffold891 WUBlastX LINE_RTE-BovB 57841 58221 46 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LINE_L2 179007 179570 68 - . . scaffold44008 GLEAN mRNA 176056 181412 0.761228 - . ID=CGI_10015290; scaffold44008 WUBlastX LINE_L2 179597 179869 112 - . . scaffold44008 GLEAN mRNA 176056 181412 0.761228 - . ID=CGI_10015290; scaffold1728 WUBlastX LINE_CR1-L2 27496 28257 152 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 157309 157407 33 - . . . . . -1 -1 -1 . . . scaffold42274 WUBlastX LTR_Gypsy 152640 153419 230 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-BovB 47188 47640 108 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LINE_RTE-BovB 48413 48559 74 - . . . . . -1 -1 -1 . . . scaffold187 WUBlastX LTR_Ngaro 15980 16237 41 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 189742 190092 47 - . . . . . -1 -1 -1 . . . scaffold41346 WUBlastX DNA_P 39784 40449 96 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok 151789 151899 29 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 152021 152110 37 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 152706 153047 137 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold43786 WUBlastX LINE_RTE-X 322196 323086 144 - . . . . . -1 -1 -1 . . . scaffold40234 WUBlastX LINE_RTE-X 84542 84892 230 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 188862 189041 40 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 189020 189271 99 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 189408 189671 111 + . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LINE_L2 19105 19857 127 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold3 WUBlastX LINE_CR1-L2 136600 136680 24 + . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Ngaro 15535 15777 118 + . . . . . -1 -1 -1 . . . scaffold1636 WUBlastX LTR_Gypsy 6549 6974 250 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Gypsy 26247 26576 91 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy 194339 194554 37 + . . . . . -1 -1 -1 . . . scaffold33502 WUBlastX LINE_Penelope 11830 12222 21 - . . . . . -1 -1 -1 . . . scaffold33502 WUBlastX LINE_Penelope 12239 12736 83 - . . . . . -1 -1 -1 . . . scaffold33502 WUBlastX LINE_Penelope 12725 12859 61 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-BovB 157777 158433 230 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_RTE-X 85361 85972 148 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 477811 478050 41 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1073744 1073971 76 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold332 WUBlastX LINE_RTE-X 633571 633837 120 + . . . . . -1 -1 -1 . . . scaffold37668 WUBlastX LTR_DIRS 36061 36576 60 + . . . . . -1 -1 -1 . . . scaffold37668 WUBlastX LTR_DIRS 36876 37226 137 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LTR_Ngaro 50758 50877 20 + . . . . . -1 -1 -1 . . . scaffold908 WUBlastX DNA_IS4EU 36196 36570 104 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_Penelope 196452 196862 285 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 63912 64025 61 - . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold772 WUBlastX LINE_RTE-X 57921 58634 192 + . . scaffold772 GLEAN mRNA 32739 66911 0.999897 - . ID=CGI_10016575; scaffold501 WUBlastX LTR_Ngaro 927468 927914 122 - . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Ngaro 31584 31817 82 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Ngaro 31826 31933 80 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Ngaro 32497 32598 26 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LTR_Gypsy 62610 63692 270 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 61773 61931 97 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LINE_L1-Tx1 243159 243617 259 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_CR1 897151 897939 203 - . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX LTR_Ngaro 34587 35000 78 - . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX DNA_MuDR 138423 138482 33 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX DNA_MuDR 138478 139212 177 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 177974 178741 206 + . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold804 WUBlastX LINE_RTE-X 298834 299853 218 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX RC_Helitron 438130 438606 358 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LINE_L2 191790 192554 273 - . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold465 WUBlastX LINE_L2 2291 2725 265 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 61261 61683 242 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_IS4EU 181573 182085 74 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_TcMar-Marin 88527 88904 160 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L2 70240 70323 71 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 32846 33001 108 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_IS4EU 528184 529104 159 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_IS4EU 530050 530148 36 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 23541 23708 79 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1525 WUBlastX DNA_Kolobok 236159 236515 73 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_Kolobok 237941 238159 94 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_Kolobok 238982 239224 87 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1 474827 475012 42 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold34610 WUBlastX LINE_L2 16257 17084 34 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LINE_L2 17104 17454 138 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 800303 800416 74 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold1464 WUBlastX LTR_Gypsy 3016 3591 187 + . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold1089 WUBlastX LTR_DIRS 113421 113936 238 - . . . . . -1 -1 -1 . . . scaffold38364 WUBlastX DNA_TcMar-Tc1 51633 51731 57 - . . . . . -1 -1 -1 . . . scaffold38364 WUBlastX DNA_TcMar-Tc1 51734 52363 140 - . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LTR_Gypsy 71300 71581 114 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_RTE-X 390827 391918 212 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_RTE-X 185134 185610 232 - . . scaffold82 GLEAN mRNA 181182 187437 1 + . ID=CGI_10025244; scaffold507 WUBlastX LINE_L1-Tx1 38244 38888 82 + . . scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold719 WUBlastX LTR_Pao 201314 202078 203 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_IS4EU 455052 455708 320 + . . scaffold1715 GLEAN mRNA 440859 458026 0.998814 + . ID=CGI_10019678; scaffold1157 WUBlastX LINE_RTE-X 41713 42102 24 + . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LTR_Gypsy-Cigr 69214 69987 295 + . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_L1-Tx1 5975 6658 149 + . . . . . -1 -1 -1 . . . scaffold810 WUBlastX LINE_RTE-X 52808 53401 325 - . . . . . -1 -1 -1 . . . scaffold33610 WUBlastX LTR_Gypsy 12984 13097 22 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_Penelope 149249 150520 298 - . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LTR_Gypsy 57307 57504 28 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_RTE-X 100527 100682 28 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LTR_Gypsy 142420 142533 31 + . . . . . -1 -1 -1 . . . C29184 WUBlastX LINE_L1-Tx1 5976 6308 220 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_TcMar-Tigge 958039 958431 61 + . . scaffold1301 GLEAN mRNA 940827 961246 0.536299 + . ID=CGI_10027751; scaffold737 WUBlastX LINE_L2 77911 78162 140 + . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 186613 187140 128 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 109089 109955 353 + . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LTR_DIRS 124881 125780 379 - . . . . . -1 -1 -1 . . . scaffold1266 WUBlastX LTR_Ngaro 58610 59422 427 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L1-Tx1 73921 74118 77 + . . scaffold140 GLEAN mRNA 45423 78027 0.362757 - . ID=CGI_10020123; scaffold1097 WUBlastX LTR_Gypsy 66543 67304 139 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 67308 67370 51 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 67364 67789 262 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LTR_Gypsy-Cigr 280858 281007 116 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy-Cigr 282134 282292 33 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold190 WUBlastX DNA_IS4EU 310295 310651 163 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX DNA_IS4EU 311075 311497 120 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX DNA_IS4EU 311768 311938 76 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX DNA_IS4EU 312098 312220 48 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX DNA_IS4EU 312559 312678 29 - . . . . . -1 -1 -1 . . . C35606 WUBlastX LTR_Gypsy 6168 6896 34 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_Kolobok 206833 207351 226 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX DNA_Kolobok 205595 205765 104 - . . . . . -1 -1 -1 . . . scaffold452 WUBlastX LINE_L1-Tx1 143429 143800 57 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 496380 496454 73 - . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LINE_RTE-X 50880 51110 30 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_RTE-BovB 75811 76236 355 + . . scaffold43702 GLEAN mRNA 66519 92177 0.245591 - . ID=CGI_10011903; scaffold541 WUBlastX LTR_Gypsy 17555 20005 465 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L1-Tx1 35362 36702 165 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L1-Tx1 36692 36835 78 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_RTE-BovB 75611 75799 138 + . . scaffold43702 GLEAN mRNA 66519 92177 0.245591 - . ID=CGI_10011903; C28958 WUBlastX LTR_Gypsy-Cigr 5337 6053 494 + . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LTR_Gypsy 192063 192755 433 - . . scaffold1277 GLEAN mRNA 180148 200196 1 + . ID=CGI_10008024; scaffold1551 WUBlastX LTR_Gypsy 105790 106338 28 + . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LTR_DIRS 522625 523338 456 + . . scaffold506 GLEAN mRNA 522445 523350 0.999997 + . ID=CGI_10019280; scaffold160 WUBlastX LTR_Ngaro 440121 440714 434 - . . . . . -1 -1 -1 . . . scaffold1814 WUBlastX LINE_RTE-X 18517 19611 370 + . . scaffold1814 GLEAN mRNA 14118 21091 0.753154 - . ID=CGI_10003975; scaffold1054 WUBlastX LTR_DIRS 27426 27752 113 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_DIRS 27753 27809 25 + . . . . . -1 -1 -1 . . . C22138 WUBlastX LINE_L2 1 858 388 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_TcMar-Pogo 51199 51414 90 + . . scaffold1888 GLEAN mRNA 49981 53887 0.998764 + . ID=CGI_10013292; scaffold337 WUBlastX LINE_RTE-X 365609 366394 431 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 367072 367137 33 + . . . . . -1 -1 -1 . . . scaffold36728 WUBlastX LINE_Penelope 671 1699 422 - . . scaffold36728 GLEAN mRNA 432 7345 0.999672 - . ID=CGI_10002097; scaffold977 WUBlastX DNA_hAT 165664 166140 150 + . . scaffold977 GLEAN mRNA 164557 166422 1 + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 165664 166140 150 + . . scaffold977 GLEAN mRNA 146070 167200 0.562252 - . ID=CGI_10017163; scaffold977 WUBlastX DNA_hAT 164539 165288 372 + . . scaffold977 GLEAN mRNA 164557 166422 1 + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 164539 165288 372 + . . scaffold977 GLEAN mRNA 146070 167200 0.562252 - . ID=CGI_10017163; scaffold591 WUBlastX LTR_DIRS 79377 80141 249 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 715366 715488 27 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_IS4EU 2954 3868 406 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 1075770 1075922 74 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX DNA_En-Spm 92125 93537 433 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LINE_L2 33802 34542 348 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 229721 230626 436 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_CR1 440656 441435 478 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX DNA_TcMar-Tc1 153589 154224 365 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX DNA_TcMar-Tc1 154227 154508 52 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_TcMar-Tc1 548523 548831 106 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LINE_L1-Tx1 3912 4427 76 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LINE_L1-Tx1 5402 6055 222 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 685991 686263 44 + . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_RTE-X 45815 46222 109 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1-Tx1 329490 330029 186 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 476981 477448 195 + . . . . . -1 -1 -1 . . . scaffold36170 WUBlastX LTR_Gypsy 17791 18177 63 + . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX DNA_IS4EU 57987 58244 29 + . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX DNA_TcMar-Marin 60580 60984 232 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Sola 612278 613123 314 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Sola 613365 613568 136 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Sola 614107 614421 150 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 131321 131578 71 - . . . . . -1 -1 -1 . . . scaffold1779 WUBlastX DNA_Harbinger 24562 25098 423 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX DNA_TcMar-Tc1 23650 23757 26 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX DNA_TcMar-Tc1 23756 24613 402 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_L1-Tx1 393126 393341 48 + . . scaffold1900 GLEAN mRNA 384856 401407 0.999777 - . ID=CGI_10017347; scaffold41834 WUBlastX LTR_Gypsy 118008 119108 649 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L1-Tx1 147541 148860 304 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Sola 1417068 1419053 549 + . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-BovB 17222 17809 526 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 684367 684633 73 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_Sola 178605 178949 87 - . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LINE_RTE-X 44274 45257 432 + . . . . . -1 -1 -1 . . . scaffold1876 WUBlastX LINE_RTE-X 108940 110505 523 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 298919 299188 22 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Ngaro 224167 224769 379 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold38884 WUBlastX LTR_DIRS 48548 49297 538 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 49339 49539 149 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold36390 WUBlastX LTR_Pao 30148 30234 25 + . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LTR_Gypsy 35621 35941 225 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L1-Tx1 24487 25473 712 + . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LTR_Gypsy 255629 256321 401 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 77652 78224 219 - . . . . . -1 -1 -1 . . . scaffold458 WUBlastX DNA_Sola 62740 63471 210 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 428924 429721 52 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 430143 430226 43 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 13699 14172 119 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LTR_Gypsy 180398 181213 524 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 188393 189628 134 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold556 WUBlastX LINE_L1-Tx1 36608 36928 135 - . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_L1-Tx1 37808 38251 191 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 321664 321888 59 - . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LTR_Gypsy 72717 73787 107 + . . . . . -1 -1 -1 . . . scaffold982 WUBlastX LINE_RTE-X 3004 4047 240 - . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_RTE-BovB 45442 45720 115 + . . . . . -1 -1 -1 . . . scaffold223 WUBlastX Unknown 283323 283451 25 + . . scaffold223 GLEAN mRNA 275585 285591 0.814847 - . ID=CGI_10012923; scaffold42994 WUBlastX LINE_RTE-BovB 5405 5572 69 + . . scaffold42994 GLEAN mRNA 5441 10039 0.836758 + . ID=CGI_10008312; scaffold43608 WUBlastX LTR_Caulimoviru 6059 7030 63 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LTR_Copia 83933 84175 67 - . . scaffold1773 GLEAN mRNA 83391 85072 0.980126 - . ID=CGI_10011225; scaffold34388 WUBlastX LTR_Pao 4631 4732 25 - . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LINE_CR1 248253 248360 51 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX DNA_TcMar-Marin 131821 132531 29 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold880 WUBlastX DNA_TcMar-Tc1 358470 358931 52 + . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_L2 229084 229206 46 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold1342 WUBlastX LINE_CR1-L2 4122 4238 52 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX DNA_hAT-Tip100 166679 166951 45 - . . scaffold374 GLEAN mRNA 164183 170659 0.970084 - . ID=CGI_10018719; scaffold977 WUBlastX LTR_Gypsy 209808 210023 20 + . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LTR_DIRS 326462 326581 28 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LTR_DIRS 159229 159360 43 + . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LTR_Ngaro 46337 46453 65 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LTR_Ngaro 144676 145062 35 - . . . . . -1 -1 -1 . . . C33320 WUBlastX LTR_Gypsy 913 1110 30 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 501700 501897 24 - . . scaffold461 GLEAN mRNA 501442 501951 0.618241 - . ID=CGI_10020116; scaffold145 WUBlastX LTR_Gypsy 1152318 1153244 32 + . . scaffold145 GLEAN mRNA 1139972 1169601 0.998984 + . ID=CGI_10026576; scaffold41884 WUBlastX LTR_Gypsy 127022 127948 32 - . . . . . -1 -1 -1 . . . scaffold814 WUBlastX LTR_Gypsy 86461 86604 27 - . . scaffold814 GLEAN mRNA 83997 88485 0.997298 + . ID=CGI_10008194; scaffold707 WUBlastX DNA_Harbinger 20739 21173 26 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Harbinger 585135 585290 92 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_IS4EU 563624 564013 72 - . . scaffold619 GLEAN mRNA 562382 563821 1 - . ID=CGI_10025775; scaffold126 WUBlastX DNA_IS4EU 92552 92752 33 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_IS4EU 93483 93584 44 + . . . . . -1 -1 -1 . . . scaffold109 WUBlastX DNA_hAT-Ac 239996 240154 59 + . . scaffold109 GLEAN mRNA 221861 297851 0.997753 - . ID=CGI_10022112; scaffold43956 WUBlastX LINE_I 8291 8329 21 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_TcMar-Marin 367282 367413 20 + . . scaffold267 GLEAN mRNA 365338 373963 1 + . ID=CGI_10018307; scaffold1449 WUBlastX LINE_L2 171564 171872 54 - . . . . . -1 -1 -1 . . . scaffold29846 WUBlastX LINE_L1 535 801 35 + . . . . . -1 -1 -1 . . . scaffold42124 WUBlastX LINE_L1-Tx1 3546 3758 52 - . . . . . -1 -1 -1 . . . C28450 WUBlastX LINE_L1-Tx1 2155 2424 36 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 214734 214886 27 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 215447 215617 26 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 611424 611684 41 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold313 WUBlastX LINE_RTE-X 1036924 1037385 21 - . . . . . -1 -1 -1 . . . scaffold41356 WUBlastX LINE_RTE-X 58018 58242 32 - . . scaffold41356 GLEAN mRNA 49810 66673 0.811456 + . ID=CGI_10004995; scaffold58 WUBlastX LINE_RTE-X 481178 481312 21 - . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX LINE_RTE-X 86432 86557 47 + . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 86432 86557 47 + . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold1589 WUBlastX LINE_RTE-BovB 865448 865591 21 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_PiggyBac 861869 861964 71 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 10729 11049 43 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Ngaro 1565420 1565542 29 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_CR1-L2 160265 160474 65 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold880 WUBlastX LINE_CR1-L2 584082 584198 21 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1-L2 584202 584303 38 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L2 681050 681532 47 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1 651139 651315 83 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LINE_L2 18675 18797 39 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold1615 WUBlastX LTR_Gypsy 5010 5141 43 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Gypsy 251278 251409 58 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Gypsy 251409 251558 51 + . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX DNA_hAT-Ac 293871 294242 72 + . . scaffold1210 GLEAN mRNA 285896 306998 0.325296 + . ID=CGI_10014610; scaffold939 WUBlastX LTR_Gypsy 103692 103790 26 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX DNA_Kolobok-IS4 189518 189586 36 + . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX RC_Helitron 112304 112765 93 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX DNA_Harbinger 151629 151904 48 - . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX LINE_L1 275615 275830 69 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L1 1010797 1011255 24 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX LINE_L1-Tx1 50365 50532 79 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_L1-Tx1 695282 695497 59 + . . scaffold469 GLEAN mRNA 673707 700737 0.794331 - . ID=CGI_10024692; scaffold70 WUBlastX LINE_L1 590734 590913 46 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_NOF 155175 155375 51 + . . . . . -1 -1 -1 . . . C23024 WUBlastX LINE_Penelope 354 581 51 - . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LINE_Penelope 28673 29038 52 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_Penelope 579687 580244 27 - . . . . . -1 -1 -1 . . . scaffold1334 WUBlastX LINE_RTE-X 12515 12649 50 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold1334 WUBlastX LINE_RTE-X 12703 12798 32 + . . scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold1189 WUBlastX LINE_RTE-X 238309 238488 47 + . . . . . -1 -1 -1 . . . scaffold1848 WUBlastX LINE_RTE-X 116895 117110 79 + . . . . . -1 -1 -1 . . . scaffold38672 WUBlastX DNA_Sola 56285 56701 34 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_TcMar-Tc2 314204 314659 97 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_L1-Tx1 240584 240847 23 + . . scaffold186 GLEAN mRNA 224585 255140 0.999343 - . ID=CGI_10012616; scaffold942 WUBlastX LINE_CR1 86703 86756 30 + . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_CR1-L2 72140 72586 44 + . . scaffold1858 GLEAN mRNA 68859 77379 0.839673 + . ID=CGI_10010443; scaffold818 WUBlastX LINE_CR1-L2 57246 57428 69 + . . . . . -1 -1 -1 . . . scaffold40808 WUBlastX LINE_CR1-L2 44116 44379 94 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_CR1 106857 107192 52 + . . scaffold1800 GLEAN mRNA 94548 111010 0.999101 - . ID=CGI_10016398; scaffold1817 WUBlastX LINE_L1 98729 99040 88 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX DNA_En-Spm 100006 100455 67 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 1069223 1069399 27 + . . scaffold393 GLEAN mRNA 1064716 1077682 0.999605 + . ID=CGI_10026920; scaffold1097 WUBlastX LTR_Ngaro 575785 576003 107 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold40526 WUBlastX LTR_DIRS 57102 57356 94 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Gypsy 251150 251269 23 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold672 WUBlastX LINE_L1 148187 149023 63 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_L1 486039 486419 61 + . . scaffold1554 GLEAN mRNA 475769 486188 0.34149 + . ID=CGI_10017375; scaffold6 WUBlastX LINE_L1 25150 25860 50 - . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_RTE-X 25264 25494 52 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-X 96594 96851 41 + . . . . . -1 -1 -1 . . . scaffold218 WUBlastX LINE_RTE-BovB 45049 45210 72 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_PiggyBac 355900 356313 72 + . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LINE_L1-Tx1 59363 59689 20 - . . scaffold1686 GLEAN mRNA 58573 59710 0.792752 - . ID=CGI_10005075; scaffold1828 WUBlastX LINE_DRE 1042 1185 20 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LTR_Gypsy 1185 1493 76 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_CR1 43620 43679 22 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L2 558049 558366 45 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 768444 768593 73 - . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 130702 131250 100 - . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy 46722 47288 52 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy 99760 99888 32 - . . . . . -1 -1 -1 . . . C29022 WUBlastX LTR_Gypsy 2085 2321 71 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-Ac 463391 463435 27 - . . . . . -1 -1 -1 . . . scaffold1072 WUBlastX LINE_I 17103 17468 42 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_L1-Tx1 52538 52690 68 - . . . . . -1 -1 -1 . . . scaffold37732 WUBlastX DNA_MuDR 46263 46586 95 - . . scaffold37732 GLEAN mRNA 41329 46430 0.987958 + . ID=CGI_10002485; scaffold1481 WUBlastX LINE_RTE-X 9826 9954 24 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_RTE-X 55306 55569 37 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_RTE-X 78413 78601 63 - . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 374767 375162 77 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 285382 285657 25 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX DNA_TcMar-Tc1 111491 111727 30 - . . . . . -1 -1 -1 . . . scaffold36642 WUBlastX DNA_TcMar-Tc1 30346 30591 102 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LTR_Pao 252826 252912 24 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 718827 719204 95 - . . scaffold1132 GLEAN mRNA 715893 721077 0.813716 - . ID=CGI_10023330; scaffold152 WUBlastX LTR_Gypsy 279097 279276 98 - . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_L2 399868 400341 94 - . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LINE_RTE-X 62418 62666 84 + . . scaffold5 GLEAN mRNA 46548 64040 0.730165 - . ID=CGI_10012925; scaffold378 WUBlastX LINE_RTE-X 377181 377360 111 - . . scaffold378 GLEAN mRNA 365035 378834 0.825862 - . ID=CGI_10017655; scaffold1036 WUBlastX LINE_RTE-X 605302 605745 53 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LINE_RTE-X 178742 179215 103 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_ERV1 707076 707564 110 + . . . . . -1 -1 -1 . . . scaffold935 WUBlastX LINE_RTE-BovB 78189 78419 55 + . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 368362 368466 34 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-X 179228 179470 48 - . . scaffold552 GLEAN mRNA 158159 180316 1 + . ID=CGI_10009325; scaffold39986 WUBlastX LINE_RTE-BovB 63834 64052 29 - . . . . . -1 -1 -1 . . . scaffold186 WUBlastX DNA_TcMar-Tc2 230739 231161 120 + . . scaffold186 GLEAN mRNA 224356 240570 0.99998 + . ID=CGI_10012615; scaffold186 WUBlastX DNA_TcMar-Tc2 230739 231161 120 + . . scaffold186 GLEAN mRNA 224585 255140 0.999343 - . ID=CGI_10012616; scaffold980 WUBlastX LTR_Gypsy 516444 517067 50 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 509588 509830 90 - . . . . . -1 -1 -1 . . . scaffold33934 WUBlastX LTR_Gypsy-Cigr 9749 10879 96 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_DIRS 464105 464329 34 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold586 WUBlastX LTR_Ngaro 515723 516115 111 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_En-Spm 1026067 1026111 24 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 153870 154091 125 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 30930 30983 39 + . . scaffold40282 GLEAN mRNA 26181 34807 1 + . ID=CGI_10004001; scaffold448 WUBlastX DNA_TcMar-Marin 693675 693755 24 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_TcMar-Marin 694684 694944 52 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX DNA_Kolobok-IS4 212543 213097 32 + . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold1730 WUBlastX DNA_IS4EU 147068 147580 90 + . . . . . -1 -1 -1 . . . scaffold738 WUBlastX DNA_hAT-Tip100 1929 2162 107 + . . scaffold738 GLEAN mRNA 1336 4448 1 + . ID=CGI_10000540; scaffold1134 WUBlastX DNA_Harbinger 10693 10896 32 - . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX DNA_Harbinger 10735 10935 42 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Harbinger 178080 178166 46 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 10290 10532 37 + . . . . . -1 -1 -1 . . . C33560 WUBlastX LINE_RTE-X 556 927 28 - . . . . . -1 -1 -1 . . . scaffold1355 WUBlastX LINE_RTE-X 2911 3027 27 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 87666 87956 61 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_RTE-X 852236 852373 26 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_RTE-X 852675 852983 45 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_Sola 2855 3085 41 + . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L1 95606 95800 31 - . . . . . -1 -1 -1 . . . scaffold1342 WUBlastX LINE_CR1-L2 4143 4262 61 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_L2 620056 620247 130 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 34925 35527 118 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LTR_Gypsy 88356 88502 70 - . . . . . -1 -1 -1 . . . scaffold43562 WUBlastX LINE_R2-Hero 63080 63223 25 + . . scaffold43562 GLEAN mRNA 921 63783 0.694747 + . ID=CGI_10011029; scaffold770 WUBlastX RC_Helitron 112682 112975 71 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 124981 125526 127 + . . . . . -1 -1 -1 . . . scaffold31308 WUBlastX LTR_Ngaro 8715 8960 127 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1-Tx1 1194079 1194258 63 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1-Tx1 1194288 1194350 34 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_RTE-X 86694 86969 66 - . . scaffold138 GLEAN mRNA 84559 99053 1 + . ID=CGI_10008428; scaffold925 WUBlastX LINE_L1-Tx1 482016 482429 38 + . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy-Cigr 25992 26324 125 + . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Crypton 15747 16361 150 - . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LTR_DIRS 304290 304898 56 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_I 514945 515058 30 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 102967 103275 47 - . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Harbinger 105790 106092 41 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold22 WUBlastX LINE_L1 810723 810980 63 - . . . . . -1 -1 -1 . . . scaffold33820 WUBlastX LINE_L1 3 251 121 - . . . . . -1 -1 -1 . . . scaffold722 WUBlastX DNA_TcMar-Marin 242682 242927 70 - . . scaffold722 GLEAN mRNA 213107 274814 0.920529 - . ID=CGI_10012201; scaffold1577 WUBlastX LINE_Penelope 31773 32225 65 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-BovB 468284 468643 28 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-BovB 469341 469586 58 - . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX DNA_PiggyBac 92029 92388 128 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_RTE-X 99313 99423 20 + . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LINE_RTE-X 42064 42348 89 - . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold1396 WUBlastX LINE_RTE-X 95170 95385 24 + . . . . . -1 -1 -1 . . . scaffold42252 WUBlastX LINE_RTE-X 1284 1628 88 - . . . . . -1 -1 -1 . . . C33510 WUBlastX LINE_RTE-X 5854 5928 31 + . . . . . -1 -1 -1 . . . scaffold42528 WUBlastX LINE_CR1-L2 132697 133080 112 - . . scaffold42528 GLEAN mRNA 99418 143145 0.451859 - . ID=CGI_10007209; scaffold1500 WUBlastX LINE_CR1-L2 22230 22613 112 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_CR1-L2 169915 170229 147 + . . scaffold1 GLEAN mRNA 163980 185527 0.742263 + . ID=CGI_10013469; scaffold351 WUBlastX LINE_L2 236293 236853 103 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L2 149090 149248 20 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Pao 24575 24823 29 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Gypsy 1038708 1039520 106 + . . . . . -1 -1 -1 . . . scaffold91 WUBlastX LTR_Gypsy 51152 51868 112 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_RTE-BovB 168376 168732 57 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Sola 803790 804809 70 + . . scaffold169 GLEAN mRNA 802679 805184 0.636202 + . ID=CGI_10022966; scaffold43818 WUBlastX LTR_Gypsy-Cigr 318136 318756 119 + . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX LTR_Pao 80969 81043 31 - . . . . . -1 -1 -1 . . . scaffold675 WUBlastX LINE_CR1 10568 11017 119 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 200723 201415 141 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy 192397 192495 20 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_hAT-Blackja 438191 438286 30 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_Penelope 601640 602020 112 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_Penelope 178299 178829 116 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_IS4EU 556940 557020 43 + . . scaffold1599 GLEAN mRNA 554525 590190 0.924419 + . ID=CGI_10027152; scaffold1599 WUBlastX DNA_IS4EU 558411 558614 83 + . . scaffold1599 GLEAN mRNA 554525 590190 0.924419 + . ID=CGI_10027152; C27882 WUBlastX LINE_RTE-X 2667 2861 54 - . . . . . -1 -1 -1 . . . C27882 WUBlastX LINE_RTE-X 3153 3395 52 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 104021 104518 109 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 16273 16968 29 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold43136 WUBlastX LINE_L1-Tx1 171304 171654 126 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 510251 510811 364 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Ngaro 515704 516180 104 + . . scaffold461 GLEAN mRNA 510838 522193 0.712865 + . ID=CGI_10020118; scaffold41304 WUBlastX LTR_Ngaro 81016 81564 120 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Ngaro 316558 317280 74 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Ngaro 1518579 1519196 70 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LTR_Ngaro 36854 37375 86 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_Harbinger 69207 69560 130 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L1-Tx1 5807 6265 58 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-BovB 508346 508576 68 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 39428 39856 155 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 568213 568431 42 - . . scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX LINE_RTE-X 568213 568431 42 - . . scaffold1032 GLEAN mRNA 560649 579952 0.932371 + . ID=CGI_10021694; scaffold1699 WUBlastX DNA_PiggyBac 198110 198346 87 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_L1-Tx1 379691 379861 80 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_L2 170404 171906 917 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 242680 242733 20 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L1-Tx1 146393 147592 96 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_RTE-X 44913 46460 723 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 30364 30423 25 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_CR1-L2 944466 945749 561 - . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LINE_RTE-BovB 176392 176556 95 + . . scaffold474 GLEAN mRNA 173461 184050 0.256829 - . ID=CGI_10007598; scaffold502 WUBlastX LTR_Ngaro 160301 160732 73 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_CR1 591983 592894 83 - . . . . . -1 -1 -1 . . . scaffold35336 WUBlastX DNA_IS4EU 8734 9189 119 - . . scaffold35336 GLEAN mRNA 20 10310 0.999999 - . ID=CGI_10001479; scaffold237 WUBlastX DNA_Kolobok 373589 373792 114 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 13845 14240 142 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 204877 205002 48 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 205028 205279 26 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 205739 205936 91 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_TcMar-Tc1 174736 175119 22 + . . scaffold1036 GLEAN mRNA 165168 179169 0.593142 - . ID=CGI_10019951; scaffold42790 WUBlastX LTR_Gypsy 157760 157918 107 + . . . . . -1 -1 -1 . . . C32888 WUBlastX LINE_CR1-L2 12380 12799 76 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 224992 225168 57 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_Harbinger 397473 397754 35 + . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LINE_RTE-BovB 37953 38195 190 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LTR_ERV1 369149 370366 189 - . . scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold376 WUBlastX LINE_RTE-X 439141 439659 154 + . . . . . -1 -1 -1 . . . scaffold1763 WUBlastX LINE_RTE-X 537865 538263 94 + . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy 58240 58455 135 - . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX LTR_Gypsy 59331 60338 310 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_CR1 26891 27214 21 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX DNA_TcMar-Pogo 459295 460395 140 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_RTE-X 272585 274468 957 + . . scaffold632 GLEAN mRNA 271859 278767 0.999129 + . ID=CGI_10018450; scaffold1397 WUBlastX DNA_hAT-Tip100 115027 115404 136 - . . . . . -1 -1 -1 . . . scaffold40476 WUBlastX LTR_Gypsy 27515 27739 55 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX DNA_Harbinger 339043 339153 21 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LTR_Gypsy 51812 51934 24 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_TcMar-Fot1 66648 66983 109 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX DNA_TcMar-Tc1 317994 318416 92 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Gypsy 24173 27286 1401 + . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LINE_CR1-L2 7239 7355 20 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 189408 189779 87 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Ngaro 141037 141276 109 + . . scaffold354 GLEAN mRNA 139508 142225 0.54483 - . ID=CGI_10025700; scaffold354 WUBlastX LTR_Ngaro 141037 141276 109 + . . scaffold354 GLEAN mRNA 139640 141904 0.996603 + . ID=CGI_10025701; scaffold36642 WUBlastX LINE_L1 3077 3268 25 - . . scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold42760 WUBlastX LTR_Gypsy 184952 185326 80 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1-Tx1 38891 41434 1340 - . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LINE_L2 10788 11375 173 + . . . . . -1 -1 -1 . . . scaffold1892 WUBlastX LINE_L2 286582 287169 174 + . . . . . -1 -1 -1 . . . scaffold31222 WUBlastX LINE_CR1 2821 3204 179 - . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_CR1 77887 78513 147 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold192 WUBlastX LTR_Gypsy-Cigr 14985 15560 188 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX DNA_TcMar-Tc1 436175 436621 165 + . . . . . -1 -1 -1 . . . C25050 WUBlastX DNA_hAT-Tip100 889 1860 89 - . . . . . -1 -1 -1 . . . scaffold42684 WUBlastX DNA_En-Spm 126853 127410 195 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX DNA_Harbinger 242667 243080 176 - . . . . . -1 -1 -1 . . . scaffold917 WUBlastX DNA_Harbinger 251652 252065 176 + . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LTR_Ngaro 67014 67688 162 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LTR_Ngaro 251623 252252 201 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L2 374095 374664 174 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 61053 61667 171 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_L2 158585 159199 173 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold1244 WUBlastX DNA_TcMar-Tc1 195010 195201 33 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX RC_Helitron 1078976 1082887 771 + . . . . . -1 -1 -1 . . . scaffold37002 WUBlastX LINE_CR1 8808 8972 26 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 298214 298789 149 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_DIRS 151604 152056 80 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX RC_Helitron 167074 168171 177 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1-Tx1 760149 760652 37 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1-Tx1 87488 87769 57 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 439109 441565 1675 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Pao 148440 148556 25 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 946578 947273 199 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold854 WUBlastX DNA_hAT-Tip100 641222 641380 44 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_CR1 602502 602576 22 + . . scaffold601 GLEAN mRNA 586023 611758 0.912594 - . ID=CGI_10026838; scaffold38272 WUBlastX LINE_L1-Tx1 51377 51619 68 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1-Tx1 52597 52875 80 + . . . . . -1 -1 -1 . . . scaffold38272 WUBlastX LINE_L1-Tx1 52877 53002 98 + . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LINE_RTE-X 6106 6609 72 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_RTE-X 403072 403155 38 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold109 WUBlastX DNA_Sola 11552 11896 116 - . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LTR_Gypsy 69930 70082 20 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L1-Tx1 477335 478240 54 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_L2 210894 211352 240 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_L2 211354 212286 284 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_L2 212228 213037 579 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_L2 213018 214025 482 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_Gypsy 242261 242401 24 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; C27552 WUBlastX DNA_hAT-Tip100 305 586 103 + . . . . . -1 -1 -1 . . . C27552 WUBlastX DNA_hAT-Tip100 963 1127 70 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LINE_Penelope 221971 222168 110 + . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_RTE-X 207479 207967 248 + . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-BovB 41369 41653 206 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_Sola 523174 523572 187 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LINE_RTE-X 208777 209235 179 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX RC_Helitron 1028803 1029141 84 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_CR1-L2 589113 589568 204 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold496 WUBlastX LINE_CR1 386404 386475 47 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX DNA_En-Spm 130818 131969 175 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_ERV1 42394 42972 125 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_CR1-L2 15138 15839 190 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold1322 WUBlastX LINE_CR1-L2 341182 341343 80 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_CR1-L2 341309 341770 74 + . . . . . -1 -1 -1 . . . scaffold38580 WUBlastX DNA_Merlin 54030 54428 117 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Pao 703378 704277 229 + . . scaffold854 GLEAN mRNA 698978 729843 0.21294 + . ID=CGI_10022264; scaffold401 WUBlastX LTR_Gypsy 120247 120792 284 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_Harbinger 364918 365241 195 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_IS4EU 432570 433109 201 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 421640 421759 61 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy 278239 282216 2060 - . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L2 113094 113459 246 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold728 WUBlastX LINE_CR1 516471 517187 166 - . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LTR_Ngaro 30349 30906 242 - . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LTR_Ngaro 37032 37529 186 + . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LTR_Ngaro 42649 43146 186 + . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LTR_Gypsy 99343 99438 64 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_RTE-BovB 412934 413908 225 + . . scaffold1671 GLEAN mRNA 411663 422714 0.51142 + . ID=CGI_10015159; scaffold42674 WUBlastX LINE_RTE-X 172423 173298 112 - . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold427 WUBlastX LTR_Gypsy 78177 80045 1070 + . . scaffold427 GLEAN mRNA 74413 82948 0.777732 - . ID=CGI_10006661; scaffold489 WUBlastX LTR_Gypsy 589531 590826 1206 - . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LINE_RTE-X 34312 35394 693 - . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LINE_RTE-X 35378 37642 1355 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_RTE-X 236775 237569 181 - . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX DNA_En-Spm 120319 120594 76 + . . . . . -1 -1 -1 . . . scaffold36362 WUBlastX DNA_hAT-Tip100 2284 2586 54 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1 250418 250717 102 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L1-Tx1 626568 626798 65 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LTR_Gypsy 307334 310741 2498 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_CR1 399172 399792 147 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_CR1 399836 400168 55 + . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX DNA_IS4EU 37704 37958 64 + . . scaffold39358 GLEAN mRNA 36445 38443 0.716437 + . ID=CGI_10003326; scaffold705 WUBlastX DNA_Kolobok-IS4 402700 403773 133 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold847 WUBlastX LINE_RTE-X 281182 281667 151 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LINE_RTE-X 281693 282259 67 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold6 WUBlastX LTR_Pao 128783 129556 549 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold38162 WUBlastX LINE_L1-Tx1 24904 25926 172 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L1-Tx1 907213 907725 140 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L1-Tx1 907743 908027 45 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Pao 159162 159260 49 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Pao 164334 165338 238 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Pao 202715 202774 21 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1 1048227 1048457 58 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold129 WUBlastX LINE_L1-Tx1 45793 46065 130 - . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX DNA_Harbinger 2353 2655 115 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LINE_L1-Tx1 57760 58071 187 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LINE_L1-Tx1 58076 58243 70 + . . . . . -1 -1 -1 . . . scaffold40752 WUBlastX LINE_RTE-BovB 71928 72107 34 + . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX LINE_I-Nimb 36797 38239 260 + . . . . . -1 -1 -1 . . . C28906 WUBlastX LINE_RTE-X 4810 6006 198 - . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LINE_Penelope 9739 10764 116 + . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold1823 WUBlastX LINE_L1-Tx1 47980 49047 220 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_CR1-L2 89010 89369 207 + . . . . . -1 -1 -1 . . . scaffold1203 WUBlastX LINE_CR1-L2 161210 161692 154 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Gypsy 934730 935083 98 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 935536 935907 229 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold1551 WUBlastX LTR_DIRS 178069 179694 212 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok-IS4 1475307 1475951 181 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok-IS4 1476204 1476755 102 - . . . . . -1 -1 -1 . . . scaffold32064 WUBlastX DNA_Kolobok-IS4 5908 6366 230 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 40516 41316 192 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 229336 229665 236 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_Harbinger 13492 14007 196 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_Harbinger 14064 14429 139 + . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_Gypsy 33558 34799 216 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 437963 438091 50 + . . . . . -1 -1 -1 . . . scaffold1509 WUBlastX LINE_L2 100092 101057 323 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy 281346 281762 46 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Ac 160345 160470 54 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Ac 160919 161653 190 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 501632 502375 379 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy 6254 6574 38 - . . scaffold1554 GLEAN mRNA 977 22779 0.529783 + . ID=CGI_10017354; scaffold721 WUBlastX LINE_RTE-BovB 187340 187618 213 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-BovB 187614 187793 144 - . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_TcMar-Tc1 229865 230419 141 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_DIRS 51869 52312 198 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_DIRS 53175 53384 88 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_DIRS 53462 53560 54 - . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_RTE-X 40867 41235 130 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 390915 391040 28 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 919292 919456 21 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 916819 918105 204 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_RTE-X 402007 402435 85 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 403387 404196 165 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold711 WUBlastX LTR_Gypsy 21320 22117 403 - . . . . . -1 -1 -1 . . . scaffold40076 WUBlastX LTR_Ngaro 81071 82033 337 + . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX LTR_Ngaro 42419 43369 273 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX DNA_IS4EU 311007 311711 345 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_DIRS 462412 462567 41 - . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LTR_Gypsy 459912 460343 395 - . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LTR_Gypsy 50197 50379 117 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold678 WUBlastX LINE_CR1 793613 793867 53 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 794646 794834 50 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 795017 795253 75 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX DNA_En-Spm 364871 365911 204 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX DNA_En-Spm 365946 366629 171 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_MuDR 980749 982617 440 + . . scaffold142 GLEAN mRNA 963818 985587 0.999623 - . ID=CGI_10026782; scaffold1428 WUBlastX DNA_Sola 10158 11609 432 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Sola 453112 454563 432 + . . . . . -1 -1 -1 . . . scaffold498 WUBlastX DNA_Sola 232021 233472 432 - . . scaffold498 GLEAN mRNA 228451 286019 0.470322 + . ID=CGI_10012431; C23742 WUBlastX LINE_CR1-L2 735 797 57 - . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_RTE-X 41231 41698 92 + . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX LINE_L1-Tx1 14210 14887 185 + . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX LINE_L1-Tx1 14875 15507 212 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_En-Spm 720825 721667 299 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_En-Spm 727290 728132 299 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 526891 527028 21 - . . . . . -1 -1 -1 . . . scaffold382 WUBlastX LINE_L1-Tx1 11305 12054 532 + . . . . . -1 -1 -1 . . . scaffold40808 WUBlastX LTR_DIRS 42616 43611 479 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 1025499 1026704 559 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LINE_L2 401614 401721 58 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LINE_L2 402412 402600 96 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LINE_L2 402606 403436 291 + . . . . . -1 -1 -1 . . . scaffold35346 WUBlastX DNA_Maverick 19683 19778 43 + . . . . . -1 -1 -1 . . . scaffold35346 WUBlastX DNA_Maverick 20643 20837 74 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LTR_DIRS 390161 390613 115 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LTR_DIRS 390796 391092 122 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LTR_DIRS 391216 392001 88 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LTR_DIRS 391971 392312 139 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LTR_DIRS 392380 392430 24 + . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX LTR_Gypsy 185276 185683 147 - . . scaffold1500 GLEAN mRNA 171651 188068 0.692586 - . ID=CGI_10007900; scaffold177 WUBlastX LINE_RTE-X 396706 396930 38 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_En-Spm 191775 191909 40 + . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L1-Tx1 280080 280502 214 - . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L1-Tx1 280480 281085 346 - . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_RTE-X 125499 125591 25 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold1532 WUBlastX LTR_Ngaro 1688427 1689284 358 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_L1-Tx1 929941 930063 35 + . . . . . -1 -1 -1 . . . scaffold37002 WUBlastX LINE_CR1 8406 8624 164 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L1 49664 49972 81 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 267851 268234 233 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_DIRS 749137 750951 556 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 499919 500785 426 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 500687 501055 152 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 96755 97861 247 - . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-X 203833 204231 108 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1 557044 558720 308 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold38122 WUBlastX LTR_Pao 48726 49772 327 - . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Pao 49996 50112 53 - . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Pao 50410 50616 38 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 227812 228153 52 - . . . . . -1 -1 -1 . . . scaffold193 WUBlastX LINE_CR1 374647 375906 747 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy 763284 764174 805 + . . . . . -1 -1 -1 . . . scaffold577 WUBlastX RC_Helitron 115497 116525 279 + . . . . . -1 -1 -1 . . . scaffold577 WUBlastX RC_Helitron 116527 117267 294 + . . . . . -1 -1 -1 . . . scaffold577 WUBlastX RC_Helitron 117261 117683 151 + . . . . . -1 -1 -1 . . . scaffold577 WUBlastX RC_Helitron 117650 118252 24 + . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LINE_L2 19319 20764 494 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold1583 WUBlastX DNA_Maverick 759064 759594 289 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold1583 WUBlastX DNA_Maverick 760038 760841 299 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold38026 WUBlastX LTR_Gypsy 24717 24962 72 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 26409 26708 181 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 27278 27835 161 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; C31978 WUBlastX RC_Helitron 4359 4808 140 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 495199 495279 22 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 116557 116961 50 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 152557 152922 80 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX RC_Helitron 36943 37413 60 - . . . . . -1 -1 -1 . . . scaffold35438 WUBlastX LINE_L1-Tx1 10027 10398 62 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold43084 WUBlastX LINE_RTE-X 12502 13251 176 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L1-Tx1 50619 51059 218 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L1-Tx1 51384 52031 111 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L1-Tx1 49192 49629 223 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Ngaro 29798 30106 66 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold695 WUBlastX LINE_RTE-BovB 715568 716314 559 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold42704 WUBlastX LINE_CR1 88452 88595 38 - . . . . . -1 -1 -1 . . . scaffold39652 WUBlastX LINE_L2 63866 64450 27 - . . scaffold39652 GLEAN mRNA 64383 64817 0.999372 - . ID=CGI_10003506; scaffold471 WUBlastX LTR_ERV1 266845 267144 34 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LTR_Gypsy 158256 158948 29 - . . scaffold1241 GLEAN mRNA 158229 159365 0.555898 - . ID=CGI_10016428; scaffold433 WUBlastX LTR_Gypsy 1202913 1203212 75 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LTR_Gypsy 9859 10416 69 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 235539 235646 28 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_hAT-hATw 1267554 1268387 21 - . . scaffold1009 GLEAN mRNA 1266990 1268708 0.528485 - . ID=CGI_10028792; scaffold35806 WUBlastX DNA_Kolobok-IS4 22116 22352 45 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX DNA_IS4EU 225812 225952 42 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold626 WUBlastX DNA_Harbinger 391385 391474 37 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 469514 469639 20 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_L1-Tx1 76117 76371 32 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold70 WUBlastX LINE_L1 852086 852430 50 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L1 771179 771526 24 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1 112136 112285 29 + . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX DNA_NOF? 98822 98962 35 - . . scaffold1877 GLEAN mRNA 86728 98983 0.999922 - . ID=CGI_10011956; scaffold271 WUBlastX DNA_MuDR 366787 367122 23 + . . scaffold271 GLEAN mRNA 360008 371496 0.33399 + . ID=CGI_10024471; scaffold1682 WUBlastX LINE_L1 430063 430239 57 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX DNA_TcMar-Fot1 11430 11792 37 - . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_RTE-BovB 500821 501429 47 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_RTE-BovB 853671 853856 57 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_RTE-BovB 73920 74297 70 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_Dong-R4 473498 473944 22 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold99 WUBlastX DNA_Maverick 267063 267374 53 + . . . . . -1 -1 -1 . . . scaffold38780 WUBlastX DNA_PiggyBac 6612 6794 63 - . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold1710 WUBlastX LINE_RTE-X 15133 15537 37 + . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 369097 369237 20 - . . . . . -1 -1 -1 . . . scaffold34442 WUBlastX LTR_Ngaro 11825 12025 25 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX DNA_PiggyBac 86790 86954 57 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_L1-Tx1 156847 157017 57 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 1183026 1183172 65 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX DNA_TcMar-Tc1 1288700 1288864 50 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_CR1 285952 286026 21 - . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_CR1 56703 57248 50 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_CR1-L2 120043 120189 21 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_L1 64393 64539 37 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Copia 105126 105176 25 - . . scaffold94 GLEAN mRNA 104546 105247 0.99999 - . ID=CGI_10013912; scaffold541 WUBlastX LTR_Gypsy 62287 62532 69 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold714 WUBlastX LTR_DIRS 114101 114316 54 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Tc2 155202 155405 93 + . . scaffold43242 GLEAN mRNA 154565 157582 0.118333 + . ID=CGI_10009546; scaffold1134 WUBlastX LTR_Gypsy 82316 82693 87 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX DNA_IS4EU 171103 171381 20 - . . scaffold828 GLEAN mRNA 167866 174886 0.999415 - . ID=CGI_10007370; scaffold43302 WUBlastX DNA_IS4EU 15684 15950 99 + . . scaffold43302 GLEAN mRNA 6372 24073 0.277786 - . ID=CGI_10009755; scaffold1142 WUBlastX LINE_Penelope 103241 103426 41 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_TcMar-Tc1 975984 976160 31 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 316048 316347 28 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_R2 1891 2043 20 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_Penelope 693700 693987 53 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_L1-Tx1 9839 9970 24 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX DNA_TcMar-Marin 215738 215974 50 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1-Tx1 132199 132420 44 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_L2 76163 76297 39 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_CR1-L2 456836 456958 25 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1-L2 273988 274179 47 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L2 558250 558342 46 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_CR1 602580 602801 87 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_CR1-L2 74261 74626 78 + . . scaffold152 GLEAN mRNA 60138 75351 0.999676 - . ID=CGI_10014894; scaffold1551 WUBlastX LTR_Ngaro 116230 116418 82 - . . . . . -1 -1 -1 . . . C28620 WUBlastX LTR_Gypsy 5163 5492 80 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX DNA_Kolobok-IS4 15751 16026 83 - . . . . . -1 -1 -1 . . . C32472 WUBlastX LTR_Gypsy 680 820 58 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Kolobok 512592 512798 73 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_Penelope 252688 252927 22 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_RTE-X 637877 638128 41 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 687566 687721 76 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_RTE-X 57386 57643 74 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LINE_RTE-BovB 71962 72111 28 - . . . . . -1 -1 -1 . . . scaffold371 WUBlastX DNA_TcMar-Tc1 10762 11022 52 + . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LINE_CR1-L2 120133 120543 45 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LINE_CR1 32548 32622 24 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L1 5046 5177 42 - . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Pao 34717 35178 24 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LTR_Gypsy 79145 79429 86 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 220153 220770 77 - . . . . . -1 -1 -1 . . . scaffold43680 WUBlastX DNA_Harbinger 165099 165236 22 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX DNA_IS4EU 396186 396497 54 + . . scaffold1462 GLEAN mRNA 396186 396948 0.759958 + . ID=CGI_10014389; scaffold27654 WUBlastX DNA_IS4EU 2371 2682 54 + . . scaffold27654 GLEAN mRNA 2371 2694 0.999068 + . ID=CGI_10000368; scaffold34 WUBlastX DNA_IS4EU 292455 292814 62 - . . scaffold34 GLEAN mRNA 290500 292814 0.678889 - . ID=CGI_10015943; scaffold43134 WUBlastX DNA_IS4EU 214645 214956 54 - . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 214645 214956 54 - . . scaffold43134 GLEAN mRNA 212178 214956 0.948909 - . ID=CGI_10008899; scaffold334 WUBlastX DNA_TcMar-Marin 922249 922380 61 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX DNA_Maverick 303893 304246 80 - . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_Maverick 160617 160763 63 + . . . . . -1 -1 -1 . . . scaffold33178 WUBlastX DNA_Maverick 3841 4302 71 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LINE_RTE-X 240900 241400 27 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LINE_RTE-X 129077 129196 46 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy-Troyk 382972 383217 84 + . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L2 190880 191164 104 + . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_L2 414423 414704 28 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_CR1-L2 1020650 1020841 88 - . . . . . -1 -1 -1 . . . scaffold42784 WUBlastX LINE_L2 66760 67056 20 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LTR_DIRS 66001 66255 87 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX RC_Helitron 184173 184745 67 - . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX RC_Helitron 15739 15918 25 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 788663 788818 37 + . . . . . -1 -1 -1 . . . scaffold41540 WUBlastX DNA_TcMar-Tc1 1940 2944 61 - . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX DNA_TcMar-Tc1 47308 47535 99 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_CR1 14908 15126 35 + . . scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold971 WUBlastX LTR_Ngaro 52000 52287 89 + . . . . . -1 -1 -1 . . . C29788 WUBlastX LINE_L1 5576 6241 80 + . . C29788 GLEAN mRNA 5498 6724 0.72793 + . ID=CGI_10000560; scaffold165 WUBlastX LINE_L1 360392 361057 80 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 336976 337026 31 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_RTE-X 172612 172932 78 + . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX LINE_L1-Tx1 41203 41463 53 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold681 WUBlastX LINE_L1 308871 309287 23 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX LTR_Pao 4694 4768 27 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Ngaro 211223 211594 68 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX DNA_IS4EU 639356 639910 65 - . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold880 WUBlastX DNA_Kolobok 671714 671929 98 + . . . . . -1 -1 -1 . . . scaffold39536 WUBlastX LINE_L1-Tx1 5802 6077 94 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1-Tx1 85865 86317 120 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_Penelope 696151 696648 112 + . . . . . -1 -1 -1 . . . scaffold793 WUBlastX LINE_RTE-BovB 768 1244 135 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 495321 495515 67 + . . . . . -1 -1 -1 . . . C31324 WUBlastX DNA_TcMar-Tc1 4560 5168 78 - . . . . . -1 -1 -1 . . . scaffold1501 WUBlastX LTR_Gypsy 55055 55579 89 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Gypsy 211173 211412 151 - . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LTR_Gypsy 72177 73073 88 - . . . . . -1 -1 -1 . . . scaffold194 WUBlastX LINE_R2-Hero 137350 137688 59 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Harbinger 389346 389759 105 + . . . . . -1 -1 -1 . . . scaffold34098 WUBlastX DNA_Harbinger 1954 2253 105 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_TcMar-Marin 476311 476772 97 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX DNA_Kolobok-Hyd 289365 289541 52 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold3 WUBlastX DNA_Kolobok-Hyd 289961 290182 38 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold801 WUBlastX LINE_RTE-X 638252 638563 82 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; scaffold43940 WUBlastX LINE_RTE-X 266903 267244 94 + . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX DNA_PiggyBac 175109 175303 90 + . . . . . -1 -1 -1 . . . scaffold296 WUBlastX DNA_TcMar-Tc1 5573 6043 119 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_TcMar-Marin 793120 793389 88 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LTR_DIRS 143853 143924 21 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LTR_DIRS 143927 144064 57 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_L2 498955 499284 92 - . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LINE_L2 91468 91989 34 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LTR_Gypsy 208622 208690 31 - . . . . . -1 -1 -1 . . . scaffold41008 WUBlastX LTR_Ngaro 50029 50982 55 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Gypsy 384416 384796 76 + . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L1-Tx1 29021 29398 65 - . . . . . -1 -1 -1 . . . scaffold39730 WUBlastX DNA_TcMar-Marin 16649 16900 90 + . . scaffold39730 GLEAN mRNA 3685 28743 0.191255 - . ID=CGI_10003588; scaffold39730 WUBlastX DNA_TcMar-Marin 16649 16900 90 + . . scaffold39730 GLEAN mRNA 16282 30561 0.999947 + . ID=CGI_10003589; scaffold337 WUBlastX LINE_RTE-X 1503663 1503962 78 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LTR_DIRS 35813 36220 79 - . . . . . -1 -1 -1 . . . scaffold33064 WUBlastX LINE_RTE-X 1017 1184 24 - . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX RC_Helitron 59822 60376 91 + . . . . . -1 -1 -1 . . . C34174 WUBlastX LINE_CR1 14593 14928 77 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L2 153709 154236 118 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LTR_DIRS 27913 28986 62 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Gypsy 86262 86636 98 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Gypsy 86648 86803 75 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 308280 308588 140 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 66009 66413 94 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold337 WUBlastX LINE_RTE-X 1190110 1190403 90 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_RTE-X 288331 288633 107 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LINE_RTE-X 77939 78112 42 - . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold42704 WUBlastX LINE_L1-Tx1 81773 82333 119 - . . . . . -1 -1 -1 . . . scaffold1669 WUBlastX LTR_Gypsy 20568 21743 749 - . . . . . -1 -1 -1 . . . scaffold1669 WUBlastX LTR_Gypsy 21668 22234 246 - . . . . . -1 -1 -1 . . . C31132 WUBlastX LINE_L2 7061 8899 773 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LTR_DIRS 85985 86347 275 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LTR_DIRS 87137 87964 622 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold211 WUBlastX LTR_Pao 18636 19763 1026 + . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_CR1-L2 185579 186016 119 - . . scaffold449 GLEAN mRNA 184691 200379 0.558382 - . ID=CGI_10010963; scaffold925 WUBlastX LTR_DIRS 500491 500751 69 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_CR1 125528 125737 125 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy 63482 64069 93 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; C26518 WUBlastX DNA_Harbinger 3805 3858 36 + . . . . . -1 -1 -1 . . . scaffold1233 WUBlastX DNA_IS4EU 13152 13433 170 - . . scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold42184 WUBlastX LINE_LOA 108808 108843 27 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 542864 543163 74 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-X 455977 456306 82 + . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold563 WUBlastX LINE_RTE-X 233638 234474 86 + . . . . . -1 -1 -1 . . . scaffold1203 WUBlastX LINE_RTE-X 148289 148528 39 - . . . . . -1 -1 -1 . . . scaffold1404 WUBlastX LINE_RTE-X 206082 206462 118 + . . . . . -1 -1 -1 . . . C34372 WUBlastX DNA_Helitron 1510 2913 910 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_RTE-X 116513 116746 55 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_RTE-X 118801 119478 362 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 378949 380157 841 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 715399 715851 279 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 551251 552066 112 - . . scaffold1018 GLEAN mRNA 547902 567181 0.39343 + . ID=CGI_10019779; scaffold1154 WUBlastX LINE_L1-Tx1 843009 843869 82 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 266967 267794 21 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_MuDR 551142 551546 93 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold1081 WUBlastX DNA_Maverick 63622 63873 96 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 63029 63412 92 + . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LTR_Gypsy 465 551 24 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Pao 793118 793378 149 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX LTR_Pao 73724 74083 43 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 282499 282624 51 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1-Tx1 289832 290008 22 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_MuDR 18446 19474 108 - . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LINE_L2 91997 92710 157 - . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_Penelope 41518 42048 127 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX DNA_TcMar-Fot1 10184 10591 115 - . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX DNA_Kolobok 15566 15820 92 + . . scaffold1789 GLEAN mRNA 10291 23583 0.974284 + . ID=CGI_10003175; scaffold992 WUBlastX DNA_Sola 23688 24239 159 - . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LTR_Gypsy 30166 31158 667 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 103944 105284 347 + . . . . . -1 -1 -1 . . . scaffold220 WUBlastX LINE_L1-Tx1 13469 14749 423 + . . . . . -1 -1 -1 . . . scaffold220 WUBlastX LINE_L1-Tx1 14904 16667 454 + . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LTR_Pao 26045 27169 806 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Pao 525979 527508 1301 - . . . . . -1 -1 -1 . . . scaffold41174 WUBlastX DNA_hAT-Tip100 817 957 38 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_CR1 832440 833126 147 + . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX LINE_L2 34358 34504 76 - . . . . . -1 -1 -1 . . . C12288 WUBlastX LTR_Gypsy 14 190 208 + . . . . . -1 -1 -1 . . . C35760 WUBlastX LTR_Gypsy 13380 13757 132 - . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX DNA_Harbinger 51711 51833 52 + . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LINE_I 16934 17278 28 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 452380 452856 114 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L2 1271120 1271758 169 - . . . . . -1 -1 -1 . . . C33534 WUBlastX LINE_CR1-L2 9672 10268 173 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_CR1 1085787 1085909 45 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy 188972 189271 73 + . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 266271 266849 204 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_TcMar-Fot1 169367 169417 20 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_Penelope 189587 189805 123 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 849305 849838 99 + . . . . . -1 -1 -1 . . . C33658 WUBlastX DNA_Sola 10759 10881 23 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; scaffold35072 WUBlastX LTR_Gypsy 18699 19127 460 - . . . . . -1 -1 -1 . . . scaffold35568 WUBlastX LINE_L1-Tx1 51 2531 1053 + . . . . . -1 -1 -1 . . . scaffold49 WUBlastX DNA_IS 254181 255044 1443 + . . scaffold49 GLEAN mRNA 244358 267681 0.992812 - . ID=CGI_10013285; scaffold280 WUBlastX LINE_CR1 529334 529384 21 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_CR1 221047 221430 93 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_CR1 221469 221708 79 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 264063 264449 101 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_RTE-X 164653 165066 44 + . . . . . -1 -1 -1 . . . scaffold33840 WUBlastX LINE_RTE-X 7904 8338 155 + . . . . . -1 -1 -1 . . . scaffold1653 WUBlastX LINE_RTE-X 5537 6262 168 - . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_RTE-X 136384 136731 183 - . . scaffold1222 GLEAN mRNA 134214 152280 0.999999 + . ID=CGI_10016238; scaffold950 WUBlastX DNA_TcMar-Tc2 108094 108936 139 - . . scaffold950 GLEAN mRNA 86388 112962 1 - . ID=CGI_10022920; scaffold145 WUBlastX DNA_TcMar-Tc1 223157 223519 79 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Gypsy 303858 305282 641 + . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LTR_DIRS 147204 148007 200 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_R2-Hero 82670 83077 136 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LINE_RTE-X 159976 160794 114 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy 678293 679456 1110 - . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; C30072 WUBlastX LINE_L1 2676 2996 117 + . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_Maverick 9612 9977 134 + . . . . . -1 -1 -1 . . . C30816 WUBlastX LINE_RTE-X 6848 7147 160 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1-Tx1 1118476 1119237 68 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L2 424556 427417 1297 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L2 427419 427721 125 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 136774 137076 94 + . . . . . -1 -1 -1 . . . scaffold371 WUBlastX LINE_CR1-L2 87792 88382 199 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LTR_DIRS 93800 94207 109 - . . scaffold1749 GLEAN mRNA 92161 94954 0.876214 - . ID=CGI_10008254; scaffold1664 WUBlastX LTR_Ngaro 43333 43824 177 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_RTE-X 100223 100630 155 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 596417 596524 43 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Maverick 596556 596873 163 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold715 WUBlastX LTR_Gypsy 17816 18031 32 + . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_Gypsy 40839 41057 31 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L2 233360 233911 147 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_L2 304135 304641 170 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 1004970 1005476 170 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Pao 345868 346899 223 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 43158 43622 93 + . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy-Cigr 101706 102050 169 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_hAT-Ac 435352 436290 187 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Pao 10642 11019 42 + . . scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold406 WUBlastX DNA_IS4EU 174893 175918 117 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_RTE-X 675255 675728 165 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_L1-Tx1 271812 272039 108 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LTR_Gypsy-Cigr 151332 153071 1327 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold100 WUBlastX LINE_L2-Hydra 111228 111443 24 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy 65751 66698 175 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold1258 WUBlastX DNA_Maverick 842149 842751 91 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy 76726 77424 210 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Gypsy 918459 918599 46 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 36852 36935 23 - . . . . . -1 -1 -1 . . . scaffold38580 WUBlastX DNA_TcMar-Marin 55262 55522 75 + . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX LTR_Gypsy-Cigr 165633 168368 2035 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L1-Tx1 185609 188149 1187 - . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold808 WUBlastX LINE_L1-Tx1 188722 188982 160 - . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold828 WUBlastX DNA_TcMar-Fot1 171297 172394 158 - . . scaffold828 GLEAN mRNA 167866 174886 0.999415 - . ID=CGI_10007370; scaffold41560 WUBlastX LINE_RTE-X 110217 110426 66 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold43396 WUBlastX LTR_Ngaro 235445 235765 100 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold1772 WUBlastX LINE_L2 404605 406653 105 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Ngaro 646912 647094 146 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 307078 307146 26 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_Penelope 510 941 177 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Gypsy 54977 56803 1099 + . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold654 WUBlastX LTR_Gypsy 61735 62748 564 + . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LTR_Ngaro 28034 28222 48 + . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LTR_Ngaro 28596 28679 52 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 320409 320597 30 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Pao 159132 159260 36 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Pao 160211 164245 2114 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 212226 212540 259 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 212590 212799 85 - . . . . . -1 -1 -1 . . . scaffold41174 WUBlastX LINE_RTE-X 69562 70299 103 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold58 WUBlastX LINE_CR1-L2 126273 127211 218 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 1081990 1082523 121 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L1-Tx1 1082950 1083744 115 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold40556 WUBlastX LTR_Ngaro 10204 10968 248 - . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold1891 WUBlastX DNA_Harbinger 151116 151211 46 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 151411 151569 37 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 152089 152433 129 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold640 WUBlastX LTR_Gypsy 150148 150435 35 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX DNA_TcMar-Pogo 97086 97352 60 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_Kolobok 332850 333041 66 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold43686 WUBlastX DNA_Zator 185000 185242 83 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold287 WUBlastX LTR_Ngaro 70120 70809 280 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_IS4EU 193128 193691 122 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 234380 234868 224 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_Proto2 64015 64473 87 - . . . . . -1 -1 -1 . . . C32098 WUBlastX DNA_TcMar-Tc1 3902 4531 212 - . . . . . -1 -1 -1 . . . scaffold35466 WUBlastX DNA_TcMar-Tc1 18731 19135 126 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Tip100 735603 736280 175 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Harbinger 56147 56266 66 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold43932 WUBlastX LINE_RTE-X 383093 383911 315 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 216521 217057 151 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 217068 217220 92 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold1188 WUBlastX LTR_Gypsy 709080 710093 55 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_RTE-X 187886 187996 48 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_DIRS 372790 373299 377 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 651582 651803 29 - . . . . . -1 -1 -1 . . . C25328 WUBlastX LINE_L2 991 1740 183 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX DNA_TcMar-Tc1 195705 195920 72 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX DNA_IS4EU 482976 483332 163 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 483756 484178 114 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 484449 484619 76 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 484809 484901 56 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 485240 485359 29 - . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold43 WUBlastX LINE_L1 327381 329765 225 + . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX LINE_L2 20949 21794 407 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L2 29768 29827 36 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_L1 190891 191364 47 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold43388 WUBlastX DNA_IS4EU 218291 219073 414 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; C24514 WUBlastX LTR_Gypsy 1 774 454 + . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LINE_L1-Tx1 62459 62734 90 - . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LINE_L1-Tx1 62781 63482 310 - . . . . . -1 -1 -1 . . . scaffold868 WUBlastX DNA_Merlin 37862 38584 415 + . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX DNA_TcMar-Tc1 243880 244899 370 - . . scaffold43630 GLEAN mRNA 172610 245452 0.0301586 + . ID=CGI_10011528; scaffold753 WUBlastX LINE_L2 356220 356777 118 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_RTE-X 101360 101563 109 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_IS4EU 211583 212239 371 - . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L1 12753 14243 296 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold564 WUBlastX LINE_CR1-L2 223886 224341 247 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Gypsy 81403 82011 244 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Harbinger 426505 427527 438 - . . . . . -1 -1 -1 . . . scaffold659 WUBlastX DNA_IS4EU 11805 12482 296 + . . scaffold659 GLEAN mRNA 29 26278 0.692942 + . ID=CGI_10014692; scaffold659 WUBlastX DNA_IS4EU 12473 12715 148 + . . scaffold659 GLEAN mRNA 29 26278 0.692942 + . ID=CGI_10014692; scaffold75 WUBlastX DNA_TcMar-Marin 48769 48909 55 + . . scaffold75 GLEAN mRNA 46839 68019 0.92374 - . ID=CGI_10005790; scaffold75 WUBlastX DNA_TcMar-Marin 49597 50001 232 + . . scaffold75 GLEAN mRNA 46839 68019 0.92374 - . ID=CGI_10005790; scaffold209 WUBlastX DNA_TcMar-Tc1 261392 261778 120 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold471 WUBlastX LTR_Gypsy-Cigr 269049 270011 591 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Ngaro 142048 142851 247 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; C31370 WUBlastX LTR_Gypsy 5137 5577 199 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_IS4EU 387864 388868 601 + . . scaffold126 GLEAN mRNA 387636 399699 0.997493 + . ID=CGI_10019196; scaffold315 WUBlastX DNA_IS4EU 30717 31721 601 + . . scaffold315 GLEAN mRNA 30489 37096 0.901071 + . ID=CGI_10020398; scaffold603 WUBlastX LINE_L1 16477 16758 41 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold34388 WUBlastX LINE_RTE-X 6991 7497 276 - . . . . . -1 -1 -1 . . . scaffold34388 WUBlastX LINE_RTE-X 7377 8237 133 - . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_L2 183776 185857 500 - . . scaffold449 GLEAN mRNA 184691 200379 0.558382 - . ID=CGI_10010963; scaffold422 WUBlastX LTR_Gypsy 528908 529009 23 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX DNA_En-Spm 147074 147532 25 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 321712 321912 61 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 915111 915239 76 - . . scaffold337 GLEAN mRNA 912502 926173 0.999981 - . ID=CGI_10028087; scaffold337 WUBlastX RC_Helitron 916100 916213 138 - . . scaffold337 GLEAN mRNA 912502 926173 0.999981 - . ID=CGI_10028087; scaffold39582 WUBlastX LINE_L1-Tx1 58970 59440 218 + . . . . . -1 -1 -1 . . . scaffold39582 WUBlastX LINE_L1-Tx1 59434 60087 185 + . . . . . -1 -1 -1 . . . scaffold39582 WUBlastX LINE_L1-Tx1 60462 60941 170 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_RTE-BovB 155829 156029 235 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold393 WUBlastX LTR_Gypsy 994013 994162 23 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L2 743717 745207 563 + . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LTR_Gypsy-Cigr 324148 325017 668 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 462607 463269 161 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 463998 465056 420 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 137636 139342 552 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 265030 265167 55 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LTR_Gypsy 86871 89534 636 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold446 WUBlastX LTR_Gypsy 164524 165135 353 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_RTE-X 405754 406785 485 + . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-BovB 18483 18791 199 - . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LINE_Penelope 9943 10767 326 + . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX LINE_Penelope 10754 11227 224 + . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX LINE_Penelope 11250 11513 158 + . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold43008 WUBlastX LINE_L1-Tx1 85383 86114 249 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 86135 86500 99 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; C28298 WUBlastX LINE_RTE-X 2 1639 605 + . . . . . -1 -1 -1 . . . scaffold467 WUBlastX LINE_RTE-X 44509 44856 71 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_RTE-X 119472 120470 360 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L2 480701 482776 633 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold973 WUBlastX LTR_Gypsy 343424 343837 98 - . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L1-Tx1 16322 16627 47 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold58 WUBlastX LTR_Gypsy-Cigr 267041 268642 301 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Gypsy 134545 135432 237 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_RTE-X 139601 140371 177 - . . . . . -1 -1 -1 . . . scaffold39464 WUBlastX DNA_Helitron 20483 22588 738 + . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LTR_Caulimoviru 277576 277713 56 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_TcMar-Marin 163216 163380 38 - . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LTR_Pao 71480 71704 60 - . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LINE_CR1-L2 158787 159125 49 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_CR1-L2 81126 81338 73 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy 283813 284208 33 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LTR_DIRS 99255 99620 36 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LTR_DIRS 99586 99813 22 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_Gypsy 5972 6127 33 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX DNA_IS4EU 174224 174382 31 + . . scaffold1678 GLEAN mRNA 153695 176010 0.290685 - . ID=CGI_10010386; scaffold514 WUBlastX LTR_ERV1 298979 299215 24 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 490597 490743 89 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_Penelope 339836 340243 57 - . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LINE_Penelope 318632 318859 81 - . . . . . -1 -1 -1 . . . scaffold34106 WUBlastX LTR_Gypsy 11290 11325 29 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold206 WUBlastX LTR_ERV1 182142 182588 52 - . . scaffold206 GLEAN mRNA 180394 182705 0.998688 - . ID=CGI_10011379; scaffold32922 WUBlastX LTR_ERV1 7580 7948 43 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_ERV1 695453 695968 37 - . . scaffold280 GLEAN mRNA 692326 718784 0.731079 - . ID=CGI_10024602; scaffold752 WUBlastX LTR_ERV1 231492 231998 38 + . . scaffold752 GLEAN mRNA 231273 232436 0.996081 + . ID=CGI_10010043; scaffold260 WUBlastX LINE_L1-Tx1 78455 78658 58 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_L1 148986 149129 45 - . . . . . -1 -1 -1 . . . C16340 WUBlastX LINE_L1-Tx1 17 280 72 + . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX LINE_L1 39487 40065 42 + . . scaffold1813 GLEAN mRNA 39463 41634 0.702385 + . ID=CGI_10005990; scaffold482 WUBlastX LINE_L1 168112 168171 24 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_L1 236063 236272 55 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 445894 446373 24 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_L1 288384 288695 29 + . . . . . -1 -1 -1 . . . scaffold178 WUBlastX LINE_Penelope 104707 104895 45 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold670 WUBlastX LINE_RTE-BovB 64566 64688 63 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_RTE-X 292563 292724 27 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; C23216 WUBlastX LTR_Gypsy 1723 2145 53 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX DNA_Maverick 87308 87616 20 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_PiggyBac 237995 238162 50 + . . scaffold150 GLEAN mRNA 224010 241607 0.593383 + . ID=CGI_10028591; scaffold1188 WUBlastX LINE_RTE-X 1070094 1070264 43 - . . . . . -1 -1 -1 . . . scaffold37680 WUBlastX DNA_TcMar-Marin 19038 19181 54 + . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LINE_L1-Tx1 37356 37520 31 - . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold38510 WUBlastX DNA_TcMar-Tc1 19997 20395 35 - . . scaffold38510 GLEAN mRNA 7470 20879 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 19997 20395 35 - . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold42366 WUBlastX LINE_L1-Tx1 36496 36741 34 - . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold784 WUBlastX LINE_L1-Tx1 718180 718455 34 - . . . . . -1 -1 -1 . . . scaffold42366 WUBlastX LINE_L1-Tx1 36538 36741 47 - . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold38056 WUBlastX DNA_TcMar-Marin 4265 4606 67 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 217095 217250 76 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold1870 WUBlastX LINE_L1-Tx1 106335 106598 22 - . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold1578 WUBlastX LTR_Pao 66976 67035 26 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1377 WUBlastX DNA_Chapaev 20668 21069 71 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_L2 92552 92992 65 - . . scaffold1164 GLEAN mRNA 91892 93484 0.836235 - . ID=CGI_10012999; scaffold1372 WUBlastX LINE_L2 131289 131675 42 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LTR_Gypsy 344975 345214 34 - . . scaffold378 GLEAN mRNA 344618 345241 0.999372 - . ID=CGI_10017652; scaffold128 WUBlastX DNA_IS4EU 60626 60973 57 - . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold37946 WUBlastX DNA_IS4EU 14533 14700 36 + . . scaffold37946 GLEAN mRNA 2025 20198 0.734311 + . ID=CGI_10002553; scaffold37946 WUBlastX DNA_IS4EU 14696 14851 31 + . . scaffold37946 GLEAN mRNA 2025 20198 0.734311 + . ID=CGI_10002553; scaffold730 WUBlastX DNA_Kolobok 135552 135671 31 + . . scaffold730 GLEAN mRNA 114725 144988 0.404014 + . ID=CGI_10019888; scaffold426 WUBlastX LINE_L1 95076 95150 27 - . . . . . -1 -1 -1 . . . C33368 WUBlastX DNA_Kolobok-Hyd 7372 7908 44 + . . C33368 GLEAN mRNA 2894 7917 0.564757 + . ID=CGI_10001057; scaffold388 WUBlastX DNA_P 425270 425377 39 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_TcMar-Tc1 10821 10985 25 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold38990 WUBlastX LINE_R2 61569 62027 78 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Pogo 59208 59378 76 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX DNA_Sola 305308 305508 56 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LINE_RTE-X 401785 401937 59 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy 98215 98580 52 - . . scaffold612 GLEAN mRNA 97858 98469 0.449004 - . ID=CGI_10009462; scaffold658 WUBlastX DNA_TcMar-Marin 278926 278982 24 - . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX LTR_Pao 134418 134504 24 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_CR1 475367 475534 63 + . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_L2 2292 2339 21 + . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX LTR_Gypsy 8481 8723 25 - . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_En-Spm 118065 118556 49 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy 3683 4276 111 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 112921 113139 71 + . . . . . -1 -1 -1 . . . C12888 WUBlastX LTR_Gypsy 5 178 98 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 214089 214148 29 - . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LINE_R2-Hero 330712 330891 28 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_hAT-hAT5 208709 208915 34 + . . scaffold1743 GLEAN mRNA 206587 209579 0.614112 + . ID=CGI_10011657; scaffold1743 WUBlastX DNA_hAT-hAT5 209268 209414 43 + . . scaffold1743 GLEAN mRNA 206587 209579 0.614112 + . ID=CGI_10011657; scaffold40822 WUBlastX DNA_Harbinger 60002 60184 38 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX DNA_P 479112 479495 48 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_NOF 202780 203016 45 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_Kolobok-Hyd 217 570 63 - . . scaffold43662 GLEAN mRNA 16 393 0.836238 - . ID=CGI_10011602; scaffold100 WUBlastX LINE_Proto2 107610 108179 84 + . . . . . -1 -1 -1 . . . scaffold39652 WUBlastX LINE_RTE-X 62279 62638 83 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 185839 186102 58 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX DNA_Sola 39540 40133 48 + . . scaffold924 GLEAN mRNA 39924 42016 0.322694 + . ID=CGI_10006838; scaffold1035 WUBlastX LTR_Gypsy 121662 122327 23 - . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX LINE_L2 188038 188232 47 - . . . . . -1 -1 -1 . . . scaffold30678 WUBlastX LINE_L2 5419 5673 55 + . . . . . -1 -1 -1 . . . C7615 WUBlastX LTR_Gypsy 3 134 118 - . . . . . -1 -1 -1 . . . scaffold38354 WUBlastX LTR_Gypsy 4449 4763 65 + . . . . . -1 -1 -1 . . . scaffold1751 WUBlastX LTR_Gypsy 174781 175161 119 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX DNA_Kolobok-IS4 99048 99578 69 + . . scaffold304 GLEAN mRNA 99360 99893 0.999366 + . ID=CGI_10016550; scaffold453 WUBlastX DNA_Kolobok 7789 8247 47 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX DNA_TcMar-Tc2 337880 338296 105 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LINE_L2 159403 159714 61 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_CR1-L2 54518 54841 48 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_PiggyBac 112639 112761 79 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_L2 205504 206217 36 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 15039 15200 79 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 15251 15349 29 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_IS4EU 304868 305008 32 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_Kolobok 148862 149101 74 - . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold42584 WUBlastX LINE_RTE-X 134675 134932 33 + . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 322834 322926 20 + . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX LINE_RTE-BovB 64202 64339 120 + . . . . . -1 -1 -1 . . . scaffold40050 WUBlastX LINE_RTE-X 27599 27703 42 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 1689653 1689949 71 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LINE_RTE-X 146898 147173 74 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 96701 97156 69 + . . scaffold631 GLEAN mRNA 95661 117923 0.999624 - . ID=CGI_10014170; scaffold41398 WUBlastX LINE_RTE-BovB 104421 104465 22 - . . . . . -1 -1 -1 . . . scaffold1458 WUBlastX LTR_Ngaro 1749 2141 33 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_L1-Tx1 61140 61334 88 - . . . . . -1 -1 -1 . . . scaffold40584 WUBlastX LINE_L1-Tx1 59485 59679 88 + . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LINE_L1-Tx1 129836 130039 111 + . . . . . -1 -1 -1 . . . scaffold38672 WUBlastX DNA_Merlin 57929 58279 120 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 424812 425084 83 - . . . . . -1 -1 -1 . . . scaffold40974 WUBlastX DNA_Kolobok 68978 69232 54 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX DNA_Kolobok-IS4 101987 102121 49 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_IS4EU 416926 417063 69 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_IS4EU 417029 417334 54 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX DNA_Harbinger 60781 61041 82 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_TcMar-Marin 696704 696928 55 - . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_Maverick 7533 7820 66 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX DNA_Maverick 5297 5488 79 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Maverick 208007 208159 116 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LINE_RTE-X 92064 92471 54 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_RTE-X 53126 53602 44 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_L1-Tx1 89385 89708 66 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy-Cigr 706364 706666 110 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Ngaro 46165 46590 65 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 137158 137346 37 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold41628 WUBlastX LINE_L1-Tx1 97076 97216 68 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Pao 352494 352769 146 + . . scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold33588 WUBlastX LTR_Gypsy-Cigr 13850 14170 111 + . . . . . -1 -1 -1 . . . scaffold37358 WUBlastX LINE_CR1-L2 35711 36145 95 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L2 1012990 1014099 62 + . . . . . -1 -1 -1 . . . scaffold309 WUBlastX LINE_CR1 73487 74914 37 + . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX DNA_Crypton 128567 129091 68 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Penelope 182481 182618 23 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Penelope 183004 183120 21 - . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX DNA_IS4EU 27049 27153 51 + . . . . . -1 -1 -1 . . . scaffold35238 WUBlastX LINE_L1 1361 1666 32 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy-Cigr 46358 46528 104 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_Copia 136010 136702 150 + . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold156 WUBlastX LTR_Gypsy 26731 27150 116 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_hAT 681597 681911 144 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_CR1 172728 173201 137 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX DNA_Crypton 387746 388087 72 - . . scaffold730 GLEAN mRNA 359674 389340 0.587782 - . ID=CGI_10019895; scaffold730 WUBlastX DNA_Crypton 388453 389073 65 - . . scaffold730 GLEAN mRNA 359674 389340 0.587782 - . ID=CGI_10019895; scaffold1383 WUBlastX DNA_Harbinger 58896 59105 52 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_hAT-Ac 46590 47048 157 + . . scaffold986 GLEAN mRNA 30562 55582 0.15443 + . ID=CGI_10009957; scaffold1729 WUBlastX DNA_Kolobok 16617 16811 46 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L2 1622807 1623370 118 - . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LINE_RTE-X 41213 41482 60 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-X 306350 306772 32 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX DNA_Maverick 216986 217210 108 + . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX LINE_RTE-BovB 49655 49999 109 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_DIRS 372572 372799 44 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_DIRS 372889 373008 20 + . . . . . -1 -1 -1 . . . scaffold685 WUBlastX LTR_Pao 80891 82411 113 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L2 89085 89234 65 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 1029477 1030223 104 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Ngaro 270149 270790 105 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_DIRS 250489 251067 90 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold401 WUBlastX LTR_Gypsy 120247 120921 142 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_hAT-Blackja 207142 207870 133 + . . scaffold1743 GLEAN mRNA 206587 209579 0.614112 + . ID=CGI_10011657; scaffold847 WUBlastX DNA_Kolobok-IS4 265225 265581 148 - . . . . . -1 -1 -1 . . . scaffold1643 WUBlastX LTR_Ngaro 182844 183050 50 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_PiggyBac 423764 424051 124 - . . . . . -1 -1 -1 . . . scaffold40050 WUBlastX LINE_RTE-X 51779 51913 61 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 210046 210801 153 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LTR_Gypsy 90854 91561 321 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1-Tx1 83146 84114 506 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1-Tx1 84065 84715 229 + . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_L1-Tx1 7478 7978 122 - . . . . . -1 -1 -1 . . . scaffold42030 WUBlastX LTR_DIRS 15132 15947 495 + . . . . . -1 -1 -1 . . . scaffold42030 WUBlastX LTR_DIRS 15767 16813 457 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 101216 101554 54 - . . . . . -1 -1 -1 . . . scaffold35438 WUBlastX LINE_CR1 13545 13721 61 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold1579 WUBlastX LINE_L2 105672 106088 129 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LTR_DIRS 94233 94514 31 - . . scaffold1749 GLEAN mRNA 92161 94954 0.876214 - . ID=CGI_10008254; scaffold459 WUBlastX LTR_Gypsy 365200 365946 105 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LTR_Gypsy 381961 382707 102 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold43894 WUBlastX LINE_Penelope 287140 287733 99 - . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_RTE-X 80302 80721 113 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_RTE-X 366566 367543 55 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_RTE-X 286369 286791 112 + . . scaffold1020 GLEAN mRNA 282198 287246 0.857946 + . ID=CGI_10012858; scaffold541 WUBlastX LTR_Gypsy-Cigr 62362 62544 179 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold1448 WUBlastX LTR_Ngaro 29855 30106 81 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold502 WUBlastX LTR_Gypsy 183052 183516 130 + . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LINE_RTE-X 122341 122667 154 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LINE_RTE-X 122637 123929 514 - . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LINE_RTE-X 124610 124930 61 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_RTE-X 105155 106552 530 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_RTE-X 106515 107480 364 + . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX LINE_L1-Tx1 85699 86097 93 + . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LTR_Gypsy 756975 757433 57 + . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LTR_Gypsy 94437 94970 21 - . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_L1-Tx1 7979 8488 177 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_CR1 35513 35911 77 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_CR1 37201 37599 77 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold1189 WUBlastX LINE_L2 233314 233886 96 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_L2 331042 331506 122 - . . scaffold168 GLEAN mRNA 320902 337238 0.996215 - . ID=CGI_10025590; scaffold241 WUBlastX LTR_Pao 342432 342878 166 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LTR_Gypsy 76736 76990 33 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX DNA_MuDR 118498 118782 112 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_L1 703210 703296 20 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 124510 125052 143 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 126176 126721 168 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_L1-Tx1 34880 35122 37 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 34880 35122 37 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold1121 WUBlastX LINE_RTE-X 16651 17403 74 + . . . . . -1 -1 -1 . . . scaffold33132 WUBlastX LINE_L1-Tx1 54 2015 812 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_CR1-L2 125438 125713 111 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LINE_RTE-X 160666 162258 1056 - . . . . . -1 -1 -1 . . . scaffold331 WUBlastX LTR_Gypsy-Troyk 44912 46180 1150 + . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_RTE-X 34351 35085 205 + . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_RTE-X 35379 35861 314 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy-Cigr 105610 107025 772 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy-Cigr 108196 108789 172 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Gypsy 249676 251865 856 - . . . . . -1 -1 -1 . . . scaffold42776 WUBlastX LINE_Rex-Babar 186896 188158 80 + . . . . . -1 -1 -1 . . . scaffold38290 WUBlastX LINE_CR1 26746 27552 72 - . . . . . -1 -1 -1 . . . scaffold1474 WUBlastX LTR_Ngaro 8683 8856 27 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-BovB 203682 203972 96 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold1475 WUBlastX LINE_L1 87484 87714 39 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_RTE-BovB 227469 227621 66 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LINE_RTE-X 172510 172632 29 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold37968 WUBlastX LTR_Pao 28080 29087 379 + . . . . . -1 -1 -1 . . . scaffold41732 WUBlastX LINE_CR1-L2 124405 124932 138 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_L2 707715 708161 66 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold1213 WUBlastX LTR_DIRS 910485 911105 152 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Harbinger 734350 734742 51 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Harbinger 736453 736710 21 + . . . . . -1 -1 -1 . . . scaffold1181 WUBlastX DNA_IS4EU 16884 18119 94 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 92205 92417 62 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_TcMar-Tc2 324123 324410 108 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_Penelope 503904 504569 135 - . . . . . -1 -1 -1 . . . scaffold955 WUBlastX LINE_RTE-BovB 118510 118665 28 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 119682 119981 29 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold41684 WUBlastX DNA_TcMar-Tc1 79308 79358 21 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_R2-Hero 142856 144535 1259 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Gypsy 235364 236959 1095 + . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX LTR_DIRS 16604 16927 158 + . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX LTR_DIRS 16933 17025 20 + . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX LTR_DIRS 16980 17615 231 + . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX LTR_DIRS 17618 17848 211 + . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX LTR_DIRS 17851 18447 195 + . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX LTR_DIRS 18468 19232 372 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 309598 311316 1362 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 114564 114887 121 + . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 465648 465746 24 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Gypsy-Cigr 428208 428792 104 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L1-Tx1 1197316 1197804 163 - . . . . . -1 -1 -1 . . . scaffold41572 WUBlastX LINE_RTE-X 12489 12836 80 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-X 165590 165724 60 + . . scaffold980 GLEAN mRNA 163810 172327 0.499535 - . ID=CGI_10019213; scaffold925 WUBlastX LTR_DIRS 501434 502447 178 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 303511 303855 164 - . . scaffold1221 GLEAN mRNA 295053 306727 0.999196 + . ID=CGI_10019742; scaffold41318 WUBlastX LINE_L1-Tx1 36783 37400 73 - . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LINE_L1-Tx1 37399 39450 1016 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Pao 408951 409178 119 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold1740 WUBlastX LTR_Pao 224123 224329 192 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_L2 724626 724730 22 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy? 295067 295456 78 + . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX LTR_Gypsy 5217 5726 164 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 187822 188442 110 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 187822 188442 110 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold227 WUBlastX LINE_Penelope 305895 306413 89 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_RTE-BovB 260719 260982 160 - . . . . . -1 -1 -1 . . . scaffold39050 WUBlastX LINE_RTE-BovB 55342 55674 178 + . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX DNA_Sola 28276 28638 78 - . . scaffold43280 GLEAN mRNA 27245 29335 1 - . ID=CGI_10009653; scaffold43280 WUBlastX DNA_Sola 28669 29022 62 - . . scaffold43280 GLEAN mRNA 27245 29335 1 - . ID=CGI_10009653; scaffold597 WUBlastX LTR_Gypsy 101106 101834 586 + . . . . . -1 -1 -1 . . . scaffold38048 WUBlastX DNA_TcMar-Tc1 33173 33472 55 + . . scaffold38048 GLEAN mRNA 5473 39952 0.557382 + . ID=CGI_10002589; scaffold852 WUBlastX LTR_Gypsy-Cigr 70439 71098 209 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold1532 WUBlastX LTR_Gypsy-Cigr 232144 232836 178 + . . scaffold1532 GLEAN mRNA 231877 233427 0.438723 + . ID=CGI_10028239; scaffold88 WUBlastX DNA_hAT-Tip100 6003 6401 101 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 6380 6748 113 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold67 WUBlastX DNA_hAT-Tip100 28846 29244 101 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold67 WUBlastX DNA_hAT-Tip100 29223 29591 113 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold1692 WUBlastX LINE_RTE-BovB 30620 30724 22 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 109593 110000 186 - . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 111147 111701 471 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LTR_Gypsy 8251 8421 36 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_Jockey 6549 7322 75 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 162932 163798 94 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_RTE-X 393756 394301 173 - . . scaffold43 GLEAN mRNA 380222 414471 0.256408 - . ID=CGI_10021355; scaffold42128 WUBlastX DNA_TcMar-Tc1 12811 12948 78 + . . scaffold42128 GLEAN mRNA 1970 15266 0.99078 + . ID=CGI_10006194; scaffold321 WUBlastX LINE_RTE-X 144608 145216 166 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-X 138378 138920 154 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_TcMar-Tc1 95585 95809 35 - . . . . . -1 -1 -1 . . . scaffold268 WUBlastX LINE_CR1 66072 66641 155 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_L2 645698 645739 21 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 234201 234479 73 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 235408 235674 46 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy-Cigr 609948 610175 69 - . . . . . -1 -1 -1 . . . C30608 WUBlastX LTR_Gypsy 2961 4019 685 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_L1-Tx1 90452 90853 56 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_L1-Tx1 90862 93015 1026 - . . . . . -1 -1 -1 . . . scaffold1264 WUBlastX LINE_L1-Tx1 137531 139060 328 + . . scaffold1264 GLEAN mRNA 129263 151960 0.5 - . ID=CGI_10007176; C33482 WUBlastX LINE_CR1-L2 3155 3337 35 + . . . . . -1 -1 -1 . . . C33482 WUBlastX LINE_CR1-L2 4102 4563 71 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L2 615704 615907 90 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_DIRS 255548 256300 134 + . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX LTR_DIRS 53156 53551 206 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_R2-Hero 310558 310791 89 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX DNA_Harbinger 672839 673024 99 + . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold564 WUBlastX LTR_Gypsy 193378 193827 184 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Harbinger 220330 220719 131 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Harbinger 221034 221294 105 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LINE_RTE-X 91529 92386 143 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_DIRS 556315 557232 216 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Ngaro 355686 356174 247 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LTR_Gypsy 286745 287320 179 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Ngaro 263829 263951 42 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_L2 303521 304096 217 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 94369 94521 82 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95656 95802 78 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold43280 WUBlastX LINE_L1-Tx1 111683 112192 253 - . . scaffold43280 GLEAN mRNA 92021 113272 0.543593 + . ID=CGI_10009655; scaffold43664 WUBlastX LINE_RTE-X 213931 214167 71 + . . scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold150 WUBlastX LTR_Ngaro 114848 115216 34 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Maverick 385590 385802 68 + . . . . . -1 -1 -1 . . . scaffold40832 WUBlastX LINE_RTE-X 82546 82632 22 - . . scaffold40832 GLEAN mRNA 51373 82869 0.350561 + . ID=CGI_10004457; scaffold747 WUBlastX LTR_Gypsy 400849 402096 1039 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_Harbinger 363556 364071 112 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_L2 623358 623501 72 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_L2 623509 623970 148 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX DNA_Harbinger 36689 37099 202 - . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX DNA_Harbinger 37591 37782 44 - . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold790 WUBlastX LTR_Gypsy 104389 104442 45 + . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 130702 131145 201 - . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 132603 132746 74 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_L1-Tx1 754087 754389 135 + . . . . . -1 -1 -1 . . . scaffold19 WUBlastX DNA_TcMar-Tc1 152225 152536 190 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold347 WUBlastX LINE_RTE-X 507543 510542 1861 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_RTE-X 510554 511030 336 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 794827 795012 121 + . . . . . -1 -1 -1 . . . scaffold1641 WUBlastX LINE_L1 296177 297640 151 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_En-Spm 99524 99862 97 - . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX LINE_RTE-X 86880 87671 239 + . . . . . -1 -1 -1 . . . C28272 WUBlastX DNA_Sola 2439 2801 44 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-BovB 44239 44892 250 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L1-Tx1 681128 681589 308 + . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 121528 122148 188 - . . scaffold1705 GLEAN mRNA 121657 122031 0.866433 - . ID=CGI_10007472; scaffold1705 WUBlastX LTR_Gypsy-Troyk 126144 126260 77 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Gypsy 157654 158253 334 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_hAT-Tip100 1282331 1282528 27 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_IS4EU 173979 174107 73 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 481810 483129 291 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy 447173 447409 79 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX DNA_TcMar-Tc1 152524 152664 39 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold40526 WUBlastX LTR_DIRS 57322 58086 237 - . . . . . -1 -1 -1 . . . C31202 WUBlastX LTR_Ngaro 1253 1645 281 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 500917 501150 125 - . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX DNA_IS4EU 23080 23211 35 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_RTE-X 22066 22365 87 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; C26626 WUBlastX LTR_Pao 2736 3020 121 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_Harbinger 724331 724606 187 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 73070 73348 57 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Ngaro 20027 20641 293 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 84722 84982 61 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX DNA_hAT-Ac 220937 221167 126 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_IS4EU 548158 548550 269 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 437616 438044 37 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437616 438044 37 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold36898 WUBlastX DNA_Maverick 11855 12061 133 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L2 150817 151218 248 + . . . . . -1 -1 -1 . . . C27086 WUBlastX DNA_TcMar-Marin 121 498 155 + . . . . . -1 -1 -1 . . . C27086 WUBlastX DNA_TcMar-Marin 864 1244 183 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 15400 16446 385 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 18041 18274 101 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 18844 18951 60 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 19556 19693 44 + . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX DNA_Sola 188584 189777 232 + . . scaffold1440 GLEAN mRNA 175302 192419 0.333291 + . ID=CGI_10008358; scaffold37290 WUBlastX LTR_Ngaro 3472 3936 156 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_CR1 832566 833135 355 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 286354 287124 390 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Maverick 59964 60599 351 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_L1-Tx1 186019 186837 225 + . . scaffold784 GLEAN mRNA 178600 195281 0.744931 - . ID=CGI_10024415; scaffold33980 WUBlastX DNA_hAT-Tip100 3187 3531 172 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold257 WUBlastX LTR_DIRS 1157141 1157563 34 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_L1-Tx1 2702 3403 211 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_RTE-X 311509 312573 279 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 1623221 1623448 59 - . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_L1-Tx1 87487 87759 27 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 222743 223966 79 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_hAT 323491 324822 401 + . . scaffold334 GLEAN mRNA 323446 325161 0.945369 + . ID=CGI_10025931; scaffold593 WUBlastX LTR_Pao 268302 268928 162 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_L2 500483 500719 111 + . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 313175 313621 285 - . . . . . -1 -1 -1 . . . scaffold39582 WUBlastX LINE_L1-Tx1 58883 59440 139 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 147562 147879 227 - . . scaffold1009 GLEAN mRNA 143472 160185 0.373363 + . ID=CGI_10028719; scaffold1009 WUBlastX LTR_Ngaro 147878 148510 182 - . . scaffold1009 GLEAN mRNA 143472 160185 0.373363 + . ID=CGI_10028719; scaffold38378 WUBlastX LINE_L1-Tx1 52959 53351 45 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_L1-Tx1 459567 459989 171 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1-Tx1 934327 935535 302 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 134196 134570 222 - . . . . . -1 -1 -1 . . . scaffold34388 WUBlastX LINE_RTE-X 8177 8446 48 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LTR_Copia 63468 64412 517 - . . . . . -1 -1 -1 . . . scaffold331 WUBlastX LINE_Penelope 46387 48183 405 - . . . . . -1 -1 -1 . . . C22518 WUBlastX LINE_RTE-X 699 1781 403 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 134235 134639 205 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 135097 135480 54 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-X 9077 9670 179 - . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LTR_Pao 79099 80460 314 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold1402 WUBlastX LINE_CR1 341836 342000 51 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; C29450 WUBlastX LINE_Penelope 4944 5384 250 + . . . . . -1 -1 -1 . . . scaffold1354 WUBlastX LINE_RTE-X 167837 169453 425 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_TcMar-Fot1 487066 487521 167 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX DNA_Sola 918288 918815 115 + . . . . . -1 -1 -1 . . . C26936 WUBlastX LTR_Gypsy-Gmr1 2271 2831 413 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; scaffold31538 WUBlastX DNA_Maverick 101 1234 532 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Maverick 623899 624204 204 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1042563 1042781 81 - . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX DNA_En-Spm 94177 94893 334 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 131447 132493 617 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 136173 137234 565 + . . . . . -1 -1 -1 . . . scaffold38210 WUBlastX LINE_RTE-X 23552 24565 158 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold595 WUBlastX LTR_Ngaro 90988 91254 170 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold35344 WUBlastX RC_Helitron 13471 13785 31 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 791431 792270 117 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 792266 792472 116 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 792499 792633 47 - . . . . . -1 -1 -1 . . . scaffold1261 WUBlastX LINE_L1 24624 24926 78 - . . . . . -1 -1 -1 . . . scaffold38400 WUBlastX LTR_DIRS 12769 13776 707 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_Zator 333806 334294 170 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_Zator 334303 335088 439 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_Zator 335126 335962 73 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_DIRS 279698 281125 564 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy-Cigr 90263 90697 126 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Pao 146645 147082 309 - . . . . . -1 -1 -1 . . . scaffold477 WUBlastX LTR_Gypsy 161270 162535 757 + . . . . . -1 -1 -1 . . . scaffold43170 WUBlastX LINE_CR1 79732 81360 773 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_DIRS 573210 575207 780 + . . . . . -1 -1 -1 . . . scaffold38438 WUBlastX LTR_Pao 4463 5281 738 - . . . . . -1 -1 -1 . . . scaffold36140 WUBlastX LINE_L2 7974 8993 546 - . . scaffold36140 GLEAN mRNA 6624 23811 0.998174 + . ID=CGI_10001795; scaffold42930 WUBlastX DNA_Maverick 132706 132996 186 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 85868 86443 177 - . . . . . -1 -1 -1 . . . scaffold1184 WUBlastX LINE_RTE-X 15830 16576 46 - . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_CR1 29808 29987 40 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_hAT-Ac 63462 63647 27 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_L2 1046194 1046277 31 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_L2 1046307 1046465 34 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_CR1 553023 553178 40 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold43686 WUBlastX LINE_CR1-L2 8988 9098 29 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_CR1-L2 9110 9241 27 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_CR1-L2 9250 9291 36 - . . . . . -1 -1 -1 . . . C29882 WUBlastX LTR_Ngaro 1676 2047 50 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Lenti 79491 79730 47 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L2 612899 613273 42 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold43076 WUBlastX LINE_L2 83654 83929 34 - . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX LINE_L2 240 575 36 - . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX DNA_Crypton 139450 139644 41 - . . . . . -1 -1 -1 . . . C34116 WUBlastX LTR_Gypsy-Cigr 3682 4338 43 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX DNA_En-Spm 100006 100548 24 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LTR_Gypsy 113379 113732 83 - . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX DNA_hAT-hAT5 146082 146255 26 - . . scaffold1766 GLEAN mRNA 123917 148776 0.996199 - . ID=CGI_10006278; scaffold11 WUBlastX DNA_Harbinger 57224 57424 69 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_Harbinger 25006 25263 46 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold40104 WUBlastX DNA_Harbinger 54758 54862 43 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Harbinger 270241 270405 39 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold1004 WUBlastX DNA_Kolobok-Hyd 463712 464392 35 - . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold115 WUBlastX DNA_TcMar-Marin 624012 624152 38 + . . scaffold115 GLEAN mRNA 617761 631483 0.999676 + . ID=CGI_10021409; scaffold128 WUBlastX LINE_Penelope 191982 192101 65 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1 28047 28154 64 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold789 WUBlastX DNA_MuDR 372947 373123 30 - . . . . . -1 -1 -1 . . . scaffold36572 WUBlastX LINE_RTE-X 14565 14906 34 - . . . . . -1 -1 -1 . . . C33510 WUBlastX LINE_RTE-BovB 5051 5155 28 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_RTE-BovB 167203 167307 28 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_RTE-BovB 194720 194860 59 - . . . . . -1 -1 -1 . . . scaffold1652 WUBlastX LINE_RTE-X 246753 246818 23 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_RTE-X 425427 425627 61 + . . . . . -1 -1 -1 . . . scaffold41358 WUBlastX DNA_TcMar-Tc1 111122 111208 36 + . . scaffold41358 GLEAN mRNA 104455 115098 0.650923 - . ID=CGI_10004976; scaffold149 WUBlastX LINE_L1-Tx1 958887 959000 36 - . . scaffold149 GLEAN mRNA 948392 959761 0.932291 - . ID=CGI_10025333; scaffold39592 WUBlastX LINE_L1-Tx1 43230 43391 82 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_CR1-L2 483981 484196 82 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Pao 293175 293519 58 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Copia 285457 285609 70 - . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_L2 53549 53971 45 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold698 WUBlastX LINE_CR1-L2 246236 246514 36 - . . scaffold698 GLEAN mRNA 242867 252447 0.999676 + . ID=CGI_10020738; scaffold908 WUBlastX DNA_Kolobok-IS4 340496 340630 44 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX RC_Helitron 81368 81586 64 - . . scaffold1024 GLEAN mRNA 70811 87216 0.389681 + . ID=CGI_10028519; scaffold948 WUBlastX DNA_IS4EU 107718 107792 26 + . . . . . -1 -1 -1 . . . scaffold43494 WUBlastX LINE_Penelope 24690 24905 31 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1 116889 117080 39 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 2603 3079 35 - . . . . . -1 -1 -1 . . . scaffold41806 WUBlastX LINE_RTE-X 1478 1738 52 + . . scaffold41806 GLEAN mRNA 391 2493 0.999723 - . ID=CGI_10005641; scaffold343 WUBlastX LINE_RTE-X 367503 367628 36 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX DNA_Sola 32999 33076 33 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 154260 154487 52 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 475956 476081 81 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_RTE-X 40326 40511 53 - . . scaffold1528 GLEAN mRNA 36206 41053 1 - . ID=CGI_10013212; scaffold198 WUBlastX LINE_CR1-L2 1171358 1171429 37 - . . scaffold198 GLEAN mRNA 1155548 1172013 0.535042 + . ID=CGI_10027850; scaffold198 WUBlastX LINE_CR1-L2 1171358 1171429 37 - . . scaffold198 GLEAN mRNA 1169314 1180690 0.99935 - . ID=CGI_10027851; scaffold11 WUBlastX LINE_L2 354101 354322 89 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L2 53687 53989 75 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1656 WUBlastX LTR_Ngaro 122631 122903 50 - . . scaffold1656 GLEAN mRNA 116802 126372 0.949613 - . ID=CGI_10006145; scaffold852 WUBlastX DNA_IS4EU 51537 51707 74 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold1788 WUBlastX DNA_IS4EU 64680 64763 23 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_IS4EU 65034 65135 63 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1603 WUBlastX RC_Helitron 59714 60229 99 + . . scaffold1603 GLEAN mRNA 44108 68236 0.999997 - . ID=CGI_10012816; scaffold368 WUBlastX DNA_Harbinger 31365 31544 60 + . . scaffold368 GLEAN mRNA 27692 45024 0.754759 - . ID=CGI_10018691; C35068 WUBlastX DNA_Harbinger 13095 13280 78 + . . C35068 GLEAN mRNA 2139 13943 0.995001 + . ID=CGI_10001414; scaffold204 WUBlastX DNA_Harbinger 411588 411800 91 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold128 WUBlastX DNA_Harbinger 384145 384357 91 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LTR_Gypsy 318781 318960 110 - . . scaffold705 GLEAN mRNA 315628 318785 0.810949 - . ID=CGI_10015515; scaffold43726 WUBlastX LINE_L1-Tx1 277742 277864 45 - . . . . . -1 -1 -1 . . . scaffold181 WUBlastX LINE_L1-Tx1 11085 11342 70 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1-Tx1 60651 60896 48 - . . . . . -1 -1 -1 . . . C30668 WUBlastX LINE_Penelope 7364 7888 64 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Penelope 179775 179951 84 - . . . . . -1 -1 -1 . . . C16820 WUBlastX LINE_Penelope 132 308 84 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_R1 53883 53963 23 + . . scaffold1424 GLEAN mRNA 53871 54215 0.99939 + . ID=CGI_10005350; scaffold664 WUBlastX LTR_Ngaro 542917 543288 61 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_L1 238696 238914 27 + . . . . . -1 -1 -1 . . . scaffold666 WUBlastX LINE_RTE-X 15544 15765 89 + . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX DNA_PiggyBac 175139 175381 38 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_PiggyBac 811182 811877 86 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Copia 125145 125264 24 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L1-Tx1 23224 23538 86 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LTR_Gypsy 324205 324282 28 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_CR1-L2 304706 304888 56 - . . . . . -1 -1 -1 . . . C29970 WUBlastX LINE_CR1-L2 5183 5272 24 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Gypsy-Cigr 352088 352870 68 - . . scaffold1255 GLEAN mRNA 352774 353274 0.927762 - . ID=CGI_10018079; scaffold39120 WUBlastX LTR_Ngaro 46147 46365 56 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold39120 WUBlastX LTR_Ngaro 46397 46558 33 - . . scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold1532 WUBlastX LTR_Gypsy 216688 216831 67 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_IS4EU 850907 851032 20 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_IS4EU 851183 851494 36 + . . scaffold601 GLEAN mRNA 851147 851398 1 + . ID=CGI_10026850; scaffold412 WUBlastX DNA_IS4EU 413731 413982 47 - . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX DNA_TcMar-Marin 236284 236583 75 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 214806 215258 60 - . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 27320 27850 24 + . . . . . -1 -1 -1 . . . scaffold35336 WUBlastX LINE_L1-Tx1 12028 12276 20 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_CR1 81121 81249 41 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LINE_CR1-L2 134387 134704 94 + . . scaffold670 GLEAN mRNA 126176 136910 0.999932 + . ID=CGI_10007410; scaffold39174 WUBlastX LTR_Gypsy 12430 12534 21 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Ngaro 338566 338709 51 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_DIRS 227896 228567 32 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 51728 51856 112 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX DNA_hAT-Hobo 220883 221146 80 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX RC_Helitron 313397 313813 65 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX DNA_TcMar-Marin 445032 445151 50 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Kolobok 304143 304292 81 + . . scaffold1131 GLEAN mRNA 303691 304307 1 + . ID=CGI_10013506; scaffold4 WUBlastX LINE_RTE-X 495333 495623 41 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_RTE-X 319759 319830 40 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold169 WUBlastX LINE_L1-Tx1 457304 457546 97 - . . . . . -1 -1 -1 . . . scaffold1747 WUBlastX DNA_TcMar-Tc2 27303 27560 55 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX DNA_TcMar-Tc1 156444 156554 30 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_L2 113169 113720 110 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy 28767 29192 101 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Gypsy 670553 670966 32 - . . . . . -1 -1 -1 . . . scaffold208 WUBlastX DNA_TcMar-Marin 32240 32881 64 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 510630 511160 104 - . . . . . -1 -1 -1 . . . scaffold1859 WUBlastX LINE_RTE-RTE 46249 46320 22 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Ngaro 49071 49259 118 - . . scaffold1094 GLEAN mRNA 39133 55977 0.999676 + . ID=CGI_10021808; scaffold773 WUBlastX LINE_L1-Tx1 284791 285024 115 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 1317887 1318285 132 - . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LTR_Gypsy-Cigr 165493 165936 82 + . . . . . -1 -1 -1 . . . scaffold1804 WUBlastX DNA_hAT-Blackja 285923 286309 93 + . . scaffold1804 GLEAN mRNA 280197 286439 0.354697 + . ID=CGI_10013383; scaffold42348 WUBlastX DNA_TcMar-Fot1 3666 3881 31 - . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX LINE_L2 63252 63602 62 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_Penelope 329677 330171 94 + . . scaffold175 GLEAN mRNA 321770 332822 0.999994 - . ID=CGI_10021321; scaffold520 WUBlastX DNA_MuDR 265545 266093 112 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_MuDR 240673 240756 31 + . . scaffold99 GLEAN mRNA 235492 241625 0.649382 + . ID=CGI_10021195; scaffold99 WUBlastX DNA_MuDR 241083 241424 75 + . . scaffold99 GLEAN mRNA 235492 241625 0.649382 + . ID=CGI_10021195; scaffold396 WUBlastX LINE_RTE-X 135268 135468 53 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 421476 422201 97 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold1020 WUBlastX DNA_TcMar-Tc1 316947 317357 101 + . . . . . -1 -1 -1 . . . scaffold39960 WUBlastX LTR_Gypsy-Cigr 50072 50545 134 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 653521 653661 28 - . . scaffold106 GLEAN mRNA 650785 658770 0.999129 - . ID=CGI_10022052; scaffold298 WUBlastX LTR_Gypsy 281365 281703 147 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold150 WUBlastX LTR_Gypsy 797674 798384 83 + . . . . . -1 -1 -1 . . . scaffold1746 WUBlastX LINE_Penelope 153172 153471 136 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 189285 190229 29 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_L1 364632 364898 104 + . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold186 WUBlastX LINE_RTE-X 211426 211683 40 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_RTE-X 211686 211823 91 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 1189761 1189901 66 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold461 WUBlastX LINE_RTE-X 96254 96421 51 - . . . . . -1 -1 -1 . . . scaffold1163 WUBlastX LINE_RTE-X 198290 198580 93 - . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold1157 WUBlastX LINE_RTE-X 162909 163295 100 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 708601 709080 47 - . . . . . -1 -1 -1 . . . scaffold41902 WUBlastX LINE_L1-Tx1 12091 12396 29 - . . . . . -1 -1 -1 . . . scaffold41628 WUBlastX LINE_L1-Tx1 97254 97457 58 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 217685 217849 56 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 217917 218036 41 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold354 WUBlastX LINE_L2 489868 490329 119 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold1814 WUBlastX LTR_Ngaro 78993 79649 74 - . . . . . -1 -1 -1 . . . scaffold250 WUBlastX LTR_Ngaro 30243 30392 36 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_TcMar-Tc2 162302 163141 141 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold394 WUBlastX LINE_RTE-BovB 139550 139897 25 + . . . . . -1 -1 -1 . . . scaffold42634 WUBlastX LINE_CR1 155196 155234 29 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 412726 413091 147 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LTR_Ngaro 85369 85632 158 - . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX DNA_Academ 20415 20687 63 + . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold41776 WUBlastX LTR_Gypsy 48761 49444 124 - . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Kolobok 1550 1660 22 + . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Kolobok 1929 2060 49 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX LINE_Penelope 159892 160170 116 - . . . . . -1 -1 -1 . . . scaffold837 WUBlastX DNA_TcMar-Tc1 21641 21955 122 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX DNA_Academ 241948 242283 89 - . . scaffold980 GLEAN mRNA 241945 242148 0.518358 - . ID=CGI_10019216; scaffold980 WUBlastX DNA_Academ 241948 242283 89 - . . scaffold980 GLEAN mRNA 242201 242902 0.579788 - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 243439 244008 198 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy-Cigr 113753 114139 205 + . . . . . -1 -1 -1 . . . scaffold1039 WUBlastX LINE_CR1 9477 10124 270 - . . . . . -1 -1 -1 . . . scaffold36398 WUBlastX LTR_Gypsy 27619 27786 34 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1 615880 615948 22 + . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX LINE_L1 73822 74886 102 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LTR_Gypsy 135202 135393 20 - . . . . . -1 -1 -1 . . . scaffold1822 WUBlastX LTR_Gypsy 12229 12756 268 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_CR1-L2 420976 422163 395 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Pao 1019984 1020136 78 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Pao 1021109 1022854 647 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Pao 1023021 1023389 229 - . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LTR_Gypsy 173986 174753 148 - . . scaffold43630 GLEAN mRNA 172610 245452 0.0301586 + . ID=CGI_10011528; scaffold1561 WUBlastX LTR_Gypsy 3022 3282 115 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX DNA_hAT-Ac 358406 358870 171 - . . scaffold210 GLEAN mRNA 357624 369316 1 + . ID=CGI_10015899; scaffold1315 WUBlastX LINE_RTE-X 175834 175956 28 + . . . . . -1 -1 -1 . . . scaffold1553 WUBlastX LINE_RTE-X 61291 62052 53 - . . . . . -1 -1 -1 . . . scaffold1553 WUBlastX LINE_RTE-X 62357 62446 40 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_RTE-X 303478 303939 128 - . . scaffold1221 GLEAN mRNA 295053 306727 0.999196 + . ID=CGI_10019742; scaffold1255 WUBlastX LINE_L2 471756 471926 59 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Gypsy 179866 182007 1018 - . . . . . -1 -1 -1 . . . scaffold1497 WUBlastX LINE_L2 52284 52913 101 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 277708 278682 169 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold146 WUBlastX LTR_Gypsy 523779 524747 110 + . . . . . -1 -1 -1 . . . scaffold33352 WUBlastX LINE_Jockey 12767 13519 143 + . . . . . -1 -1 -1 . . . scaffold527 WUBlastX LINE_L2 79265 79729 148 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_Crypton 1329273 1329788 154 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Gypsy 918521 918880 139 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX DNA_Harbinger 395011 395334 164 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Harbinger 270808 271050 76 - . . scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold198 WUBlastX DNA_NOF 1329469 1329555 48 - . . scaffold198 GLEAN mRNA 1312239 1337375 0.960179 - . ID=CGI_10027863; scaffold198 WUBlastX DNA_NOF 1330402 1330641 109 - . . scaffold198 GLEAN mRNA 1312239 1337375 0.960179 - . ID=CGI_10027863; scaffold37668 WUBlastX LINE_Penelope 28103 28669 142 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_RTE-X 556574 557023 133 - . . scaffold82 GLEAN mRNA 555436 563532 1 - . ID=CGI_10025265; scaffold94 WUBlastX LINE_RTE-X 233710 234555 88 + . . . . . -1 -1 -1 . . . scaffold40960 WUBlastX LINE_RTE-X 21710 22207 99 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Maverick 133315 133698 95 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Maverick 1363039 1363422 95 - . . . . . -1 -1 -1 . . . scaffold1247 WUBlastX DNA_TcMar-Tc1 113982 114248 157 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold482 WUBlastX LINE_L1-Tx1 167332 168057 38 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX DNA_En-Spm 113773 115512 1160 - . . scaffold498 GLEAN mRNA 111798 119002 0.999546 - . ID=CGI_10012422; scaffold834 WUBlastX LTR_Gypsy 24718 25107 74 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_CR1-L2 460 840 50 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1 155323 155901 114 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 499836 499874 23 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_En-Spm 77372 78502 126 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 554221 554499 207 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LTR_Ngaro 220853 221311 131 + . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX DNA_TcMar-Marin 384343 384675 79 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_TcMar-Tc1 694879 695016 34 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_TcMar-Tc1 102911 103048 34 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 28163 30079 914 - . . . . . -1 -1 -1 . . . scaffold38116 WUBlastX LTR_Pao 2485 2754 213 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Ngaro 80430 80753 32 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold221 WUBlastX LTR_DIRS 86567 87100 83 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Ngaro 651677 652471 116 - . . . . . -1 -1 -1 . . . C26460 WUBlastX LTR_Ngaro 1754 2173 167 + . . . . . -1 -1 -1 . . . scaffold33610 WUBlastX LTR_Gypsy 10922 11002 20 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_hAT-Blackja 259302 259466 25 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_hAT-Blackja 259466 259597 30 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_hAT-Blackja 259713 259832 55 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_hAT-Blackja 259832 259936 45 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_L1-Tx1 44494 44760 25 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LTR_Gypsy 90710 92305 1095 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1-Tx1 120958 122511 498 + . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1-Tx1 122469 123998 578 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Gypsy-Cigr 24940 28668 1367 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold42790 WUBlastX LTR_Gypsy 140518 140745 86 + . . . . . -1 -1 -1 . . . scaffold31032 WUBlastX DNA_Harbinger 8004 8087 39 + . . . . . -1 -1 -1 . . . scaffold31032 WUBlastX DNA_Harbinger 8077 8178 80 + . . . . . -1 -1 -1 . . . scaffold31032 WUBlastX DNA_Harbinger 8214 8351 44 + . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX DNA_Helitron 39831 40724 117 - . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX DNA_Helitron 40730 40777 28 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok 152250 152492 118 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold975 WUBlastX DNA_NOF 292408 293013 110 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_RTE-X 343312 343848 96 + . . scaffold334 GLEAN mRNA 333257 357250 0.999478 + . ID=CGI_10025933; scaffold610 WUBlastX DNA_TcMar-Pogo 30334 30501 48 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_Sola 489260 489520 100 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LINE_L1-Tx1 21993 24713 1226 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_L1-Tx1 132064 133254 442 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_L1-Tx1 133304 133846 44 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy-Cigr 28495 29868 558 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy-Cigr 29870 30664 341 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L1 185603 188719 1048 - . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold576 WUBlastX LTR_Pao 157392 157526 52 - . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX DNA_hAT 130986 131165 90 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold358 WUBlastX LINE_L2 98127 99566 96 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Ngaro 304890 305000 47 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_Harbinger 310838 310996 49 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold1097 WUBlastX LTR_Gypsy 479505 480233 169 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-BovB 233535 233627 38 + . . scaffold1899 GLEAN mRNA 227915 236312 0.634371 - . ID=CGI_10013614; scaffold1899 WUBlastX LINE_RTE-BovB 233632 234381 161 + . . scaffold1899 GLEAN mRNA 227915 236312 0.634371 - . ID=CGI_10013614; scaffold40106 WUBlastX LINE_Proto2 64375 65490 165 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 215345 215524 71 + . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LTR_DIRS 69545 70189 63 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_DIRS 287636 287809 92 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 318339 318416 20 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX DNA_IS4EU 277792 278292 123 + . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_L1 527302 528282 98 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX DNA_TcMar-Pogo 592864 593028 101 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold801 WUBlastX DNA_TcMar-Tc1 633141 633446 164 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; scaffold879 WUBlastX LINE_RTE-BovB 95470 97410 1677 + . . scaffold879 GLEAN mRNA 83884 129121 0.946613 - . ID=CGI_10007573; scaffold337 WUBlastX LTR_Gypsy 1345809 1346858 188 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 210753 211148 204 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_IS4EU 186954 188102 160 + . . . . . -1 -1 -1 . . . scaffold1681 WUBlastX LINE_RTE-X 5831 6379 194 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 485849 487135 725 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 487609 488979 996 - . . . . . -1 -1 -1 . . . scaffold1679 WUBlastX LTR_Gypsy 31174 32424 47 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold365 WUBlastX LTR_Gypsy 225199 227127 1219 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_CR1 530090 531628 45 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_CR1-L2 360515 360745 75 - . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold1801 WUBlastX LTR_Ngaro 70817 71461 184 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_Penelope 108525 109052 201 - . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LTR_Gypsy 131993 132730 247 - . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX LTR_Gypsy-Cigr 36452 36655 64 + . . . . . -1 -1 -1 . . . scaffold1514 WUBlastX DNA_IS4EU 57355 57555 20 + . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX LTR_Ngaro 91624 91791 38 - . . . . . -1 -1 -1 . . . scaffold40050 WUBlastX LINE_RTE-X 52765 52887 23 - . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LINE_L2 10642 11040 245 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_RTE-X 262210 262947 131 + . . scaffold1160 GLEAN mRNA 253181 264437 0.999999 - . ID=CGI_10015353; scaffold1030 WUBlastX LTR_Gypsy 39825 40910 140 + . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LTR_Gypsy 127616 127711 22 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX DNA_IS4EU 15080 15214 77 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX DNA_IS4EU 15216 15356 40 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_Penelope 571286 572017 166 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; C34552 WUBlastX LINE_RTE-X 6605 7039 165 - . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LINE_Penelope 18522 18833 29 - . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LINE_Penelope 18769 19347 115 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 175300 175659 56 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 1 84 22 - . . . . . -1 -1 -1 . . . scaffold37292 WUBlastX LINE_L1-Tx1 20730 24473 1852 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 568905 569216 248 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Kolobok 208878 209075 60 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold43008 WUBlastX LINE_L1 85037 85351 138 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold487 WUBlastX LINE_RTE-X 7791 8462 64 - . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_L2 135876 136214 121 + . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_L2 137135 137221 29 + . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Pao 65124 65219 35 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Fot1 648857 649141 80 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold1521 WUBlastX LINE_RTE-X 336280 336834 60 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_CR1-L2 862186 863133 177 - . . . . . -1 -1 -1 . . . scaffold38448 WUBlastX LINE_L2 28591 29067 174 - . . . . . -1 -1 -1 . . . scaffold38448 WUBlastX LINE_L2 29043 29333 75 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Gypsy 7555 7653 21 + . . . . . -1 -1 -1 . . . scaffold40614 WUBlastX LTR_DIRS 64546 64692 37 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold1499 WUBlastX LTR_DIRS 4422 6539 209 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_DIRS 266289 268406 209 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_RTE-X 184363 184626 122 - . . scaffold82 GLEAN mRNA 181182 187437 1 + . ID=CGI_10025244; scaffold241 WUBlastX LINE_RTE-X 759644 760363 101 - . . . . . -1 -1 -1 . . . scaffold1266 WUBlastX LTR_Ngaro 61033 61245 37 - . . . . . -1 -1 -1 . . . scaffold188 WUBlastX LINE_RTE-X 223354 224283 204 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 149005 149589 139 - . . scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold43150 WUBlastX DNA_Sola 56705 56944 32 - . . . . . -1 -1 -1 . . . C29558 WUBlastX LTR_Gypsy 5840 6538 224 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_DIRS 861050 861625 134 + . . . . . -1 -1 -1 . . . scaffold36862 WUBlastX DNA_En-Spm 5228 5956 143 - . . . . . -1 -1 -1 . . . scaffold36862 WUBlastX DNA_En-Spm 7762 7959 61 - . . . . . -1 -1 -1 . . . scaffold41858 WUBlastX LINE_CR1 108590 110326 206 + . . scaffold41858 GLEAN mRNA 107447 123979 1 + . ID=CGI_10005770; scaffold38370 WUBlastX LTR_DIRS 47507 47854 46 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 330365 330583 128 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 330980 331381 115 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 57149 57400 37 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX DNA_TcMar-Marin 77258 77407 40 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX DNA_TcMar-Marin 77671 77850 25 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX DNA_TcMar-Marin 78034 78429 208 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 193422 193949 22 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX DNA_Kolobok-IS4 511476 511676 64 + . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold1889 WUBlastX LINE_L1 547924 548490 226 - . . . . . -1 -1 -1 . . . C32176 WUBlastX LTR_Pao 7786 7890 51 - . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 13790 14068 147 - . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 14038 14517 210 - . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX LTR_Gypsy 8699 10156 341 + . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_L1-Tx1 156781 157704 306 + . . . . . -1 -1 -1 . . . scaffold41660 WUBlastX LINE_RTE-X 20955 21722 115 - . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Sola 215976 216359 93 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Sola 216822 217289 101 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LTR_Pao 943566 943820 25 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L1-Tx1 656185 656427 118 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L1-Tx1 656571 657038 41 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L1-Tx1 656938 657561 108 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 88256 88771 53 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 88954 89028 50 - . . . . . -1 -1 -1 . . . scaffold35154 WUBlastX DNA_Harbinger 6001 6405 192 + . . . . . -1 -1 -1 . . . scaffold35154 WUBlastX DNA_Harbinger 6399 6875 163 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L1-Tx1 136613 137386 90 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LTR_Pao 13243 13308 27 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_Penelope 116117 116743 165 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX DNA_TcMar-Tc1 256049 256633 262 - . . scaffold914 GLEAN mRNA 255125 272585 0.997448 + . ID=CGI_10018883; scaffold664 WUBlastX LINE_CR1-L2 399584 399940 101 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_L1 509094 509255 32 + . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold1293 WUBlastX LTR_DIRS 88831 90129 372 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_IS4EU 38888 39190 116 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_IS4EU 39198 39713 178 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_IS4EU 39940 40185 69 - . . . . . -1 -1 -1 . . . C34218 WUBlastX RC_Helitron 2239 3042 128 - . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX LTR_Gypsy 32741 34021 365 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy 82000 83040 250 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_DIRS? 560775 561569 445 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Ngaro 82962 83939 391 - . . . . . -1 -1 -1 . . . scaffold1470 WUBlastX LTR_Ngaro 69300 70277 391 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_RTE-X 144806 145261 63 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 349727 350092 21 - . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_RTE-X 157227 158051 342 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 55455 55751 71 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 234875 235018 24 - . . . . . -1 -1 -1 . . . C35172 WUBlastX DNA_En-Spm 2254 3498 417 + . . C35172 GLEAN mRNA 161 6399 0.907032 + . ID=CGI_10001431; scaffold43500 WUBlastX LINE_L1-Tx1 99185 99988 273 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L1-Tx1 124829 125527 38 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LTR_Pao 214779 215618 346 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold38854 WUBlastX LTR_Gypsy 35893 36426 166 + . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LTR_Gypsy 33066 33233 44 + . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LTR_Gypsy 8385 8471 22 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 413226 413633 86 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Gypsy 1173580 1175271 71 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_hAT-hATw 135603 136250 39 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold1186 WUBlastX DNA_Kolobok-IS4 183068 184126 480 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 380778 382016 486 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 330778 331749 514 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold748 WUBlastX LTR_Pao 14143 14619 45 - . . . . . -1 -1 -1 . . . scaffold41162 WUBlastX LTR_Gypsy-Cigr 88697 89347 315 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy-Cigr 89332 89649 145 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold236 WUBlastX DNA_TcMar-Marin 483218 483562 178 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX DNA_TcMar-Marin 483606 484265 291 - . . . . . -1 -1 -1 . . . scaffold1299 WUBlastX LINE_RTE-BovB 139253 139909 42 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1754 WUBlastX DNA_hAT-Tip100 212427 212693 28 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_hAT-Tip100 213493 213738 65 + . . . . . -1 -1 -1 . . . scaffold477 WUBlastX LTR_Gypsy 161036 162535 474 + . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX LINE_RTE-X 5273 5734 216 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Pao 170521 170718 94 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold211 WUBlastX LINE_L2 35046 36434 435 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1-Tx1 856645 857373 326 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX RC_Helitron 331067 332389 573 + . . . . . -1 -1 -1 . . . scaffold37252 WUBlastX DNA_IS4EU 10701 10910 72 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_TcMar-Tc1 254820 255548 263 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX DNA_TcMar-Tc1 255483 255596 48 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold1889 WUBlastX LTR_Gypsy 34382 34504 21 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LTR_Gypsy 303511 304158 161 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 1074769 1075131 95 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy-Cigr 109188 109592 138 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy-Cigr 109555 110295 226 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy-Cigr 110763 111062 266 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_Harbinger 101067 101393 121 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_Harbinger 101401 101574 142 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_Harbinger 102372 102797 249 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1 97920 99767 240 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_L2 91570 91701 42 - . . . . . -1 -1 -1 . . . scaffold1173 WUBlastX LTR_Gypsy 112072 112152 25 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_Kolobok-IS4 398241 398468 27 - . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold42596 WUBlastX LTR_Gypsy 99182 99751 442 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 39882 40259 27 - . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold1261 WUBlastX LINE_L1 21334 21531 75 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 849340 849507 65 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-X 802002 803222 351 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-X 803543 803728 76 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1-Tx1 64146 65135 449 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LTR_Ngaro 70947 71705 456 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LTR_Ngaro 71940 72278 231 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy 603361 604029 565 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 436546 436749 86 + . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_RTE-X 18280 18528 26 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Gypsy-Cigr 518935 519654 466 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Maverick 165068 166348 752 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LTR_Ngaro 33688 34092 331 - . . . . . -1 -1 -1 . . . scaffold37344 WUBlastX LTR_Pao 42008 42880 829 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy-Cigr 602747 603172 220 + . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LINE_RTE-X 95971 97077 173 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 30210 30497 162 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy 31166 31609 230 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Copia 353704 353862 26 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX DNA_hAT-Tip100 99518 99745 61 - . . scaffold829 GLEAN mRNA 96076 100192 0.932887 + . ID=CGI_10021140; scaffold975 WUBlastX LTR_Copia 287072 287365 62 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L2 1257941 1258024 24 + . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LINE_CR1-L2 154685 154849 68 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L2 280091 280264 28 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_L2 434132 434512 37 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 615263 615400 20 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_DIRS 845475 845711 46 + . . . . . -1 -1 -1 . . . scaffold32470 WUBlastX LTR_Gypsy 1221 1442 95 - . . scaffold32470 GLEAN mRNA 176 4292 1 + . ID=CGI_10000898; scaffold1670 WUBlastX LTR_Gypsy 504911 505297 20 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_hAT-Ac 219947 220219 67 + . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold867 WUBlastX DNA_IS4EU 247087 247266 72 - . . . . . -1 -1 -1 . . . scaffold39380 WUBlastX DNA_IS4EU 54290 54799 35 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_TcMar-Marin 369258 369341 58 - . . . . . -1 -1 -1 . . . scaffold484 WUBlastX DNA_TcMar-Marin 48 131 58 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_L1 80379 80453 26 + . . scaffold597 GLEAN mRNA 78607 89731 0.999999 - . ID=CGI_10004930; scaffold152 WUBlastX LINE_L1 78908 79036 26 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_L1-Tx1 22491 22589 25 - . . . . . -1 -1 -1 . . . scaffold560 WUBlastX DNA_TcMar-Marin 106256 106429 61 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX DNA_TcMar-Marin 58530 58613 46 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX DNA_TcMar-Marin 58620 58748 35 - . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX DNA_TcMar-Marin 53011 53142 65 + . . . . . -1 -1 -1 . . . scaffold38438 WUBlastX DNA_TcMar-Marin 54086 54214 48 - . . scaffold38438 GLEAN mRNA 54044 54235 0.618241 - . ID=CGI_10002770; scaffold780 WUBlastX LINE_R2 681133 681492 88 + . . . . . -1 -1 -1 . . . scaffold33832 WUBlastX DNA_P 1011 1376 48 - . . . . . -1 -1 -1 . . . C29280 WUBlastX LTR_Gypsy 2244 2768 26 + . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX DNA_MuDR 38339 38791 35 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-X 293366 293656 51 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R1 160162 160215 20 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold773 WUBlastX DNA_Maverick 239998 240576 28 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold41648 WUBlastX DNA_Maverick 87317 87550 30 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-BovB 805518 805715 21 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 219107 219304 21 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_RTE-X 113198 113401 51 - . . scaffold482 GLEAN mRNA 106791 115709 0.887892 + . ID=CGI_10010996; scaffold1682 WUBlastX LTR_Ngaro 324514 324972 30 + . . . . . -1 -1 -1 . . . scaffold1156 WUBlastX LINE_L1-Tx1 4215 4364 43 - . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LTR_Gypsy-Cigr 12451 13140 41 + . . scaffold1697 GLEAN mRNA 140 13575 0.983491 + . ID=CGI_10007876; scaffold1740 WUBlastX LINE_CR1-L2 118254 118487 34 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_CR1-L2 119198 119359 34 - . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_CR1 100408 100683 62 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold43130 WUBlastX LINE_CR1-L2 166860 167051 52 + . . scaffold43130 GLEAN mRNA 158411 195443 0.532479 - . ID=CGI_10008964; scaffold619 WUBlastX LTR_Ngaro 461354 461509 78 - . . . . . -1 -1 -1 . . . C33708 WUBlastX LTR_DIRS 5663 6094 20 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_IS4EU 89028 89342 46 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold100 WUBlastX LINE_CR1 539941 540351 75 - . . . . . -1 -1 -1 . . . scaffold1886 WUBlastX DNA_PiggyBac 174109 174369 77 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX DNA_hAT-Tip100 30674 30766 30 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold1717 WUBlastX LINE_CR1-L2 317062 317370 58 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_Merlin 394872 395300 84 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_TcMar-ISRm1 662302 662565 90 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX LTR_Copia 167022 167129 33 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Ngaro 366691 367143 96 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_L2 274820 275056 64 + . . scaffold156 GLEAN mRNA 272710 277708 0.558302 - . ID=CGI_10026489; scaffold116 WUBlastX LTR_Gypsy-Cigr 33794 34009 33 - . . scaffold116 GLEAN mRNA 33800 34222 1 - . ID=CGI_10009410; scaffold19 WUBlastX LTR_Gypsy 141409 141654 27 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold58 WUBlastX DNA_TcMar-Marin 564768 564881 83 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold664 WUBlastX DNA_TcMar-Marin 655894 656010 33 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1020 WUBlastX LINE_Penelope 79194 79370 45 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_Penelope 79629 79772 46 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-BovB 221413 221511 83 - . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX LINE_RTE-BovB 222722 222943 67 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L1-Tx1 532634 532936 31 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 1341687 1341872 24 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_TcMar-Tc2 596741 596920 48 + . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_Penelope 401239 401475 39 + . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX LINE_CR1 109695 109859 21 + . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold1000 WUBlastX LINE_CR1 147366 147653 91 + . . scaffold1000 GLEAN mRNA 146750 156759 0.989263 + . ID=CGI_10013075; scaffold850 WUBlastX LTR_DIRS 75526 75714 50 - . . . . . -1 -1 -1 . . . scaffold850 WUBlastX LTR_DIRS 75976 76251 48 - . . . . . -1 -1 -1 . . . scaffold148 WUBlastX DNA_Harbinger 75971 76078 24 + . . . . . -1 -1 -1 . . . scaffold148 WUBlastX DNA_Harbinger 76388 76525 45 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_P 815598 815912 82 - . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold186 WUBlastX DNA_Kolobok-Hyd 26381 26437 41 + . . scaffold186 GLEAN mRNA 25622 26612 0.366701 + . ID=CGI_10012602; scaffold186 WUBlastX DNA_Kolobok-Hyd 26567 26884 36 + . . scaffold186 GLEAN mRNA 25622 26612 0.366701 + . ID=CGI_10012602; scaffold186 WUBlastX DNA_Kolobok-Hyd 26567 26884 36 + . . scaffold186 GLEAN mRNA 26657 27313 0.617824 + . ID=CGI_10012603; scaffold1030 WUBlastX DNA_Kolobok 19400 19552 82 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Maverick 435666 436346 73 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Maverick 142816 143037 32 - . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 28407 29012 35 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_CR1 117327 117446 26 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Copia 632207 632455 21 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold520 WUBlastX LTR_DIRS 163510 163710 66 - . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 49692 49790 47 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 50195 50641 83 + . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LTR_Gypsy 182584 183210 31 - . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LTR_Gypsy 150205 150447 116 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_Harbinger 136279 136446 49 + . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold144 WUBlastX DNA_Harbinger 465824 465991 49 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX DNA_Harbinger 1028107 1028274 49 + . . scaffold1836 GLEAN mRNA 1025204 1064430 0.980298 - . ID=CGI_10026321; scaffold35694 WUBlastX LINE_R2-Hero 18998 19150 51 - . . . . . -1 -1 -1 . . . C9099 WUBlastX LINE_L1-Tx1 2 145 127 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_Penelope 47015 47491 56 - . . scaffold43660 GLEAN mRNA 33653 62551 0.969554 - . ID=CGI_10011660; scaffold34 WUBlastX LINE_RTE-X 53306 53593 100 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 407475 407837 48 + . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_RTE-X 325363 325575 111 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_Sola 521495 521749 124 - . . . . . -1 -1 -1 . . . scaffold952 WUBlastX LINE_L1-Tx1 25021 25437 52 + . . scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold1009 WUBlastX LINE_CR1 197380 197778 107 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy-Cigr 70797 71006 68 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy-Cigr 71007 71192 63 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Ngaro 300059 300184 88 + . . scaffold204 GLEAN mRNA 270844 308042 0.270192 - . ID=CGI_10026102; scaffold38736 WUBlastX DNA_Harbinger 50560 50781 103 + . . scaffold38736 GLEAN mRNA 50218 50844 1 + . ID=CGI_10002944; scaffold1785 WUBlastX DNA_IS4EU 33190 33297 23 - . . scaffold1785 GLEAN mRNA 32641 38261 0.430327 - . ID=CGI_10024350; scaffold40184 WUBlastX LINE_RTE-X 36107 36487 48 - . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_RTE-X 7177 7605 41 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-X 192182 192586 71 + . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX LINE_RTE-X 224524 224817 82 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Ngaro 223469 223744 80 - . . . . . -1 -1 -1 . . . scaffold42640 WUBlastX LINE_L2 50303 50677 67 - . . . . . -1 -1 -1 . . . C35794 WUBlastX LINE_L2 14142 14249 55 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 552412 552849 95 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold459 WUBlastX DNA_Harbinger 405848 406597 97 - . . . . . -1 -1 -1 . . . scaffold38272 WUBlastX LINE_L1-Tx1 37953 38063 38 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold606 WUBlastX LINE_L1 17737 18015 58 + . . . . . -1 -1 -1 . . . C35134 WUBlastX DNA_TcMar-Tc2 18828 19088 69 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 368901 369023 62 + . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LTR_Ngaro 13509 14048 112 + . . . . . -1 -1 -1 . . . scaffold39696 WUBlastX LTR_Ngaro 36918 37496 65 - . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX LINE_L1-Tx1 124340 124690 53 - . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX LINE_L1 110351 110941 108 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_TcMar-ISRm1 515236 516081 87 - . . scaffold301 GLEAN mRNA 515134 528114 0.999355 - . ID=CGI_10026723; scaffold1173 WUBlastX LTR_Gypsy 115223 116140 90 - . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX LTR_Gypsy 155739 156656 92 - . . . . . -1 -1 -1 . . . scaffold1354 WUBlastX LINE_L2 174154 174267 21 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold481 WUBlastX DNA_Harbinger 211688 211966 134 + . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Gypsy 331319 331576 140 - . . . . . -1 -1 -1 . . . scaffold120 WUBlastX RC_Helitron 492991 493599 70 + . . scaffold120 GLEAN mRNA 488674 498689 0.732746 + . ID=CGI_10017550; scaffold177 WUBlastX DNA_Harbinger 284677 284724 32 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold177 WUBlastX DNA_Harbinger 284880 284993 73 - . . scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold1009 WUBlastX LINE_Penelope 1186850 1187245 55 - . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX DNA_NOF 59664 60488 20 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1 157208 157690 92 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-X 314342 314569 31 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 407607 407945 89 + . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_RTE-BovB 108387 108593 118 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold211 WUBlastX LINE_RTE-BovB 1259617 1259823 111 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 650570 650986 71 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Maverick 547175 547231 21 - . . . . . -1 -1 -1 . . . scaffold1644 WUBlastX LINE_RTE-X 47447 47851 106 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 645203 645538 35 - . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LINE_L1-Tx1 53898 54272 118 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_L1-Tx1 515538 515780 134 - . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX LINE_CR1-L2 90585 90650 20 + . . . . . -1 -1 -1 . . . scaffold42784 WUBlastX LTR_Gypsy 47669 48193 133 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX RC_Helitron 205477 206103 90 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX DNA_Harbinger 375699 375959 71 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX DNA_Harbinger 376043 376207 42 + . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX LINE_L1 36822 37433 106 + . . . . . -1 -1 -1 . . . scaffold322 WUBlastX DNA_P 201778 201957 129 + . . . . . -1 -1 -1 . . . scaffold1643 WUBlastX LTR_Ngaro 185699 186211 147 - . . . . . -1 -1 -1 . . . scaffold32086 WUBlastX LTR_Ngaro 1146 1526 155 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L1-Tx1 41668 41901 44 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold1372 WUBlastX LINE_CR1-L2 131133 131558 121 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Gypsy-Cigr 364035 364436 151 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy-Cigr 508443 508961 158 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold510 WUBlastX LINE_L2 299284 299805 119 + . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX DNA_Kolobok 50250 50390 64 - . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LINE_RTE-BovB 1192 1437 125 + . . . . . -1 -1 -1 . . . scaffold1771 WUBlastX DNA_TcMar-Tc2 43160 43573 96 + . . scaffold1771 GLEAN mRNA 24790 43934 0.998608 - . ID=CGI_10004384; scaffold1710 WUBlastX DNA_Sola 487647 487967 88 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_Penelope 39630 40769 592 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_Penelope 40799 41473 242 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_RTE-BovB 481568 482626 824 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_RTE-BovB 482614 482775 97 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Gypsy 109320 110672 162 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_Penelope 704290 706200 839 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 712004 712180 84 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold1000 WUBlastX LINE_CR1 125230 125349 24 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_CR1-L2 26318 26701 28 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1217 WUBlastX LTR_Gypsy 71362 71556 27 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Ngaro 457585 458478 106 + . . . . . -1 -1 -1 . . . scaffold415 WUBlastX DNA_IS4EU 7116 7337 71 - . . . . . -1 -1 -1 . . . scaffold42598 WUBlastX LINE_RTE-BovB 161449 161556 42 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_DIRS 563682 564251 106 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold101 WUBlastX LTR_Gypsy 572454 572702 47 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 5274 6179 169 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX DNA_TcMar-Tc2 273700 275049 1088 + . . scaffold109 GLEAN mRNA 221861 297851 0.997753 - . ID=CGI_10022112; scaffold40794 WUBlastX LTR_Pao 73263 73697 121 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 411050 412210 386 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L1-Tx1 412880 413245 199 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 209279 209470 35 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Ngaro 337705 338550 107 + . . scaffold433 GLEAN mRNA 321041 347867 0.999675 + . ID=CGI_10027064; scaffold806 WUBlastX LTR_DIRS 14191 14757 112 + . . scaffold806 GLEAN mRNA 6658 18169 0.934338 + . ID=CGI_10004919; scaffold635 WUBlastX LTR_Gypsy 115768 116355 172 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold773 WUBlastX LINE_L2 230976 231752 89 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 135897 136721 71 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 137099 137698 180 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LINE_L2 177778 178488 306 - . . . . . -1 -1 -1 . . . scaffold39394 WUBlastX DNA_Harbinger 30004 31068 1059 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LTR_Pao 16986 17723 333 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_En-Spm 274314 275024 397 + . . scaffold1138 GLEAN mRNA 273468 292780 0.221988 + . ID=CGI_10015375; scaffold43836 WUBlastX LTR_Ngaro 301240 301974 125 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 561697 562230 175 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 94266 94319 22 - . . . . . -1 -1 -1 . . . scaffold1181 WUBlastX DNA_IS4EU 17361 18098 130 + . . . . . -1 -1 -1 . . . scaffold35866 WUBlastX DNA_IS4EU 8532 9269 139 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX DNA_IS4EU 349346 350083 139 - . . scaffold44 GLEAN mRNA 346940 353357 0.748127 - . ID=CGI_10016836; scaffold1889 WUBlastX LINE_RTE-X 184046 184483 115 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 805687 806004 177 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 303128 304828 1131 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_RTE-X 67072 70329 973 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Pao 72220 73977 1295 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L2 553194 553253 20 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LINE_CR1 154817 155563 96 - . . . . . -1 -1 -1 . . . scaffold40512 WUBlastX DNA_IS4EU 51632 51919 53 + . . scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold82 WUBlastX DNA_IS4EU 494605 495234 187 - . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_RTE-X 48277 48708 107 - . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LTR_Gypsy 275853 276026 105 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_Penelope 547513 549708 1249 - . . . . . -1 -1 -1 . . . scaffold1341 WUBlastX LINE_L2 21653 22537 93 - . . scaffold1341 GLEAN mRNA 4451 30218 0.992186 + . ID=CGI_10004662; scaffold973 WUBlastX LTR_Gypsy 301756 301902 96 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 709407 710351 173 + . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX DNA_Harbinger 294379 294489 22 - . . . . . -1 -1 -1 . . . scaffold1078 WUBlastX LINE_Penelope 78376 79029 126 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_TcMar-Tc1 432038 432301 79 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 1138196 1138411 67 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold39196 WUBlastX DNA_Maverick 63149 63370 72 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 1219310 1219873 562 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold977 WUBlastX LTR_Gypsy 209850 210245 31 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Gypsy 111127 111189 22 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold1322 WUBlastX DNA_hAT-Ac 364075 364275 94 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Gypsy 210976 211317 27 + . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L1 94646 95041 59 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_PiggyBac 589712 590059 185 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-RTE 83648 83740 26 + . . . . . -1 -1 -1 . . . scaffold432 WUBlastX DNA_TcMar-Tc1 325998 326546 117 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_L1-Tx1 146225 146899 145 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LTR_Gypsy-Cigr 757148 757453 283 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LTR_Gypsy-Cigr 757989 759296 849 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L1-Tx1 612491 616147 1090 - . . scaffold113 GLEAN mRNA 609492 622798 0.993341 - . ID=CGI_10021297; scaffold35180 WUBlastX LINE_L1-Tx1 18136 18543 146 - . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold35180 WUBlastX LINE_L1-Tx1 18542 19594 593 - . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold20 WUBlastX LINE_RTE-X 30325 30666 169 + . . scaffold20 GLEAN mRNA 25974 32204 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX LINE_RTE-X 30325 30666 169 + . . scaffold20 GLEAN mRNA 28495 32289 0.880534 + . ID=CGI_10023557; scaffold53 WUBlastX DNA_Sola 1161084 1161605 230 - . . scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold1703 WUBlastX LINE_RTE-X 2833 3663 114 - . . . . . -1 -1 -1 . . . scaffold1137 WUBlastX LTR_Pao 5009 5620 296 + . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LINE_RTE-RTE 125322 125822 136 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LTR_Gypsy 703465 704295 144 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_Penelope 114725 115438 140 + . . scaffold942 GLEAN mRNA 113666 137722 0.300224 + . ID=CGI_10019154; scaffold829 WUBlastX LINE_L1 614948 615691 119 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 597843 598088 81 + . . scaffold854 GLEAN mRNA 593945 607422 0.999735 + . ID=CGI_10022261; scaffold1362 WUBlastX LTR_Gypsy 251864 253402 650 - . . . . . -1 -1 -1 . . . scaffold724 WUBlastX DNA_IS4EU 112812 113582 225 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_IS4EU 17347 18117 225 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_PiggyBac 1263332 1263790 180 - . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold804 WUBlastX LINE_RTE-X 294355 294561 42 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 925886 927202 857 + . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 12573 12920 241 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LTR_Ngaro 593327 594001 176 - . . . . . -1 -1 -1 . . . scaffold287 WUBlastX LTR_Ngaro 69859 70680 171 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_DIRS 302352 302960 199 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold823 WUBlastX LTR_DIRS 92004 92612 199 + . . . . . -1 -1 -1 . . . scaffold37290 WUBlastX LTR_Ngaro 6630 7049 231 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_R2-Hero 222557 222769 45 - . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LINE_L1 697 1245 206 + . . . . . -1 -1 -1 . . . scaffold272 WUBlastX LINE_L2 45326 45781 157 + . . scaffold272 GLEAN mRNA 32744 62954 0.999882 + . ID=CGI_10003057; scaffold90 WUBlastX DNA_Maverick 125035 125550 229 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 747814 747927 54 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1-Tx1 1181063 1181725 156 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX DNA_TcMar-Tc1 156503 156811 196 + . . . . . -1 -1 -1 . . . scaffold49 WUBlastX LINE_CR1 193717 193998 110 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX DNA_Harbinger 151134 151250 47 - . . scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; C33378 WUBlastX DNA_TcMar-Fot1 2222 2344 92 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_P 561210 561362 55 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_P 561565 561663 26 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_P 562130 562276 74 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_P 562380 562481 51 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1 206207 206329 47 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-X 470635 470931 64 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy-Cigr 452489 453823 795 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 461661 463529 1276 + . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 92633 93028 249 + . . . . . -1 -1 -1 . . . C28588 WUBlastX LINE_Penelope 2717 3640 162 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_RTE-X 43244 43888 50 + . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_RTE-X 120126 120698 44 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-BovB 37963 38778 592 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-BovB 38775 39335 677 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-BovB 39367 40395 778 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX DNA_hAT-hATw 81935 82192 72 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 1098954 1099541 138 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_PiggyBac 356413 356664 98 + . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_DIRS 12786 13412 259 - . . . . . -1 -1 -1 . . . scaffold35874 WUBlastX DNA_TcMar-Tc1 22400 22660 78 + . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_Gypsy 39630 40505 201 + . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_Gypsy 41408 43999 1988 + . . . . . -1 -1 -1 . . . scaffold60 WUBlastX DNA_Academ 100039 100572 180 + . . . . . -1 -1 -1 . . . scaffold60 WUBlastX DNA_Academ 100758 101000 92 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LTR_Gypsy 341435 341659 165 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_Penelope 377328 378257 207 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Gypsy 374338 374394 20 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Gypsy 374440 375993 971 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Gypsy 375992 376492 402 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 630400 631047 71 - . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX LINE_RTE-X 40551 40736 40 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 334565 334771 53 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 20846 21112 43 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX RC_Helitron 94406 96406 1589 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX RC_Helitron 96353 96550 107 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX RC_Helitron 98453 99085 271 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LTR_Pao 223932 224120 130 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_En-Spm 202622 203878 208 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX LTR_Gypsy 208038 208625 306 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX DNA_MuDR 69790 70371 169 - . . scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold917 WUBlastX LINE_L2 91853 92560 272 - . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LTR_Ngaro 69738 69860 30 + . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX LTR_Gypsy 85070 86203 339 + . . scaffold1427 GLEAN mRNA 83286 88793 0.375742 + . ID=CGI_10005230; scaffold4 WUBlastX LINE_L1 257644 258519 93 - . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LTR_Pao 76722 77108 203 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold1698 WUBlastX DNA_Harbinger 225963 226112 56 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Harbinger 226595 227005 99 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L1-Tx1 635437 635676 131 - . . scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold709 WUBlastX DNA_En-Spm 121526 121867 119 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_En-Spm 121875 122009 38 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_I 626177 626515 21 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX DNA_Maverick 218224 218937 225 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX DNA_Maverick 218933 219193 65 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX DNA_Maverick 219693 220226 67 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_CR1-L2 387109 387435 65 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX DNA_En-Spm 417157 418191 301 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold709 WUBlastX DNA_En-Spm 120709 121047 79 - . . . . . -1 -1 -1 . . . scaffold37252 WUBlastX LINE_Penelope 11 1024 260 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LTR_Gypsy 63753 64070 173 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX DNA_Kolobok-IS4 512090 513232 275 + . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold358 WUBlastX LINE_CR1-L2 145342 145584 176 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX DNA_IS4EU 85109 86317 303 - . . . . . -1 -1 -1 . . . C21496 WUBlastX DNA_IS 1208 1444 397 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Harbinger 55720 55782 55 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_Maverick 562336 562965 368 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_TcMar-Tc1 685 1287 285 + . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LINE_L1-Tx1 266270 266428 50 - . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold100 WUBlastX LINE_L1 844404 844805 120 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Gypsy 108350 109927 375 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; scaffold963 WUBlastX LINE_RTE-X 431526 431843 62 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 431945 432067 49 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 432097 432189 35 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 432303 433073 232 - . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX LINE_L1-Tx1 59904 60320 73 - . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX LINE_L1-Tx1 60290 60865 103 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_L1-Tx1 496438 497256 106 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_L1-Tx1 497298 497798 111 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Zator 576816 577166 29 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Zator 577378 577914 85 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Gypsy 18754 19437 422 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-X 409840 410112 25 + . . . . . -1 -1 -1 . . . scaffold40006 WUBlastX DNA_Harbinger 9321 9638 124 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_Gypsy 128891 129502 363 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_Gypsy 129781 129837 36 + . . . . . -1 -1 -1 . . . C30792 WUBlastX DNA_TcMar-Tc1 6921 7235 80 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L1-Tx1 374487 374855 113 - . . . . . -1 -1 -1 . . . scaffold40938 WUBlastX LINE_L1-Tx1 4747 5196 32 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 61803 62735 365 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_IS4EU 28894 29406 435 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX DNA_IS4EU 334555 335280 416 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX DNA_Merlin 260405 261298 336 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1 582781 582843 20 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 90294 90734 54 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX DNA_TcMar-Tc1 344094 345077 270 - . . . . . -1 -1 -1 . . . scaffold40808 WUBlastX LTR_DIRS 80410 80994 335 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_TcMar-Tc1 217231 217617 168 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 68485 69324 340 - . . . . . -1 -1 -1 . . . scaffold771 WUBlastX LINE_L2 223189 224259 376 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_L1 189690 190310 248 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold1017 WUBlastX LINE_RTE-BovB 33262 33438 106 + . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LTR_Gypsy 21136 21594 150 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy 178849 178965 33 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy 179003 180130 373 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold43244 WUBlastX LINE_L1-Tx1 26128 26325 63 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_CR1 329998 330075 58 + . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX LTR_Gypsy 2 418 248 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 1285626 1285859 49 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1 84006 84128 45 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L1-Tx1 297581 297781 56 + . . . . . -1 -1 -1 . . . scaffold35854 WUBlastX LINE_L1-Tx1 26159 27433 163 + . . . . . -1 -1 -1 . . . scaffold39352 WUBlastX LINE_RTE-X 57465 57956 28 - . . . . . -1 -1 -1 . . . scaffold39352 WUBlastX LINE_RTE-X 60025 60375 77 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 55259 55648 52 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX DNA_TcMar-m44 134421 135365 588 - . . scaffold1214 GLEAN mRNA 123562 148526 0.642994 + . ID=CGI_10015477; scaffold149 WUBlastX LINE_L1-Tx1 233327 233500 41 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy-Cigr 62964 63305 27 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Pao 401012 401170 115 - . . . . . -1 -1 -1 . . . C34804 WUBlastX DNA_TcMar-Marin 3691 4098 238 - . . . . . -1 -1 -1 . . . C34804 WUBlastX DNA_TcMar-Marin 4571 4951 167 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy 337804 338679 94 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_R2-Hero 322378 322896 115 - . . . . . -1 -1 -1 . . . C33436 WUBlastX RC_Helitron 1413 1676 41 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 514160 514540 233 - . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_L1-Tx1 398106 398330 50 + . . . . . -1 -1 -1 . . . C27444 WUBlastX LINE_RTE-X 1732 2601 258 - . . . . . -1 -1 -1 . . . C27444 WUBlastX LINE_RTE-X 3360 3434 48 - . . . . . -1 -1 -1 . . . C27444 WUBlastX LINE_RTE-X 3443 3496 23 - . . . . . -1 -1 -1 . . . C27444 WUBlastX LINE_RTE-X 3493 4203 264 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Maverick 400666 402060 190 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1-Tx1 339178 339369 113 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX DNA_hAT 292578 292751 98 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 291531 291824 150 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 293606 294529 499 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold338 WUBlastX DNA_Harbinger 179261 179383 92 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_Harbinger 179569 179814 41 - . . . . . -1 -1 -1 . . . scaffold1746 WUBlastX RC_Helitron 174745 176271 717 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_CR1 47352 47567 33 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX DNA_Maverick 30293 31372 685 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX DNA_TcMar-Fot1 424989 426293 714 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 438088 438570 166 + . . . . . -1 -1 -1 . . . C32516 WUBlastX LTR_Ngaro 6191 6886 284 - . . . . . -1 -1 -1 . . . C32516 WUBlastX LTR_Ngaro 6918 7634 435 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 64804 65271 287 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 65436 66224 433 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold1213 WUBlastX LINE_L1-Tx1 1304456 1305097 135 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 1305348 1305515 23 + . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX LINE_L1-Tx1 32803 33387 24 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LTR_Pao 73702 75030 712 - . . . . . -1 -1 -1 . . . scaffold470 WUBlastX LTR_Gypsy 2102 2578 389 + . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 24559 25452 26 + . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_L1 238561 238983 140 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L2 273422 273793 72 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_L2 415783 415995 56 + . . scaffold492 GLEAN mRNA 405666 428334 0.820696 - . ID=CGI_10024834; scaffold469 WUBlastX LINE_L2 592605 592694 43 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L2 569125 569214 43 - . . scaffold626 GLEAN mRNA 566143 570342 0.433984 + . ID=CGI_10020005; scaffold1142 WUBlastX LINE_CR1 105948 106016 24 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1 1269979 1270245 60 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold143 WUBlastX LINE_L2 194591 195247 27 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1759 WUBlastX LTR_Pao 31026 31247 28 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_CR1 577119 577466 25 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy-Cigr 500517 500948 31 - . . scaffold593 GLEAN mRNA 500902 502632 0.997973 + . ID=CGI_10022533; scaffold610 WUBlastX LTR_Gypsy-Cigr 564051 564464 68 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold40390 WUBlastX LTR_Gypsy 48526 48657 39 + . . scaffold40390 GLEAN mRNA 46698 56356 0.897316 + . ID=CGI_10004052; scaffold416 WUBlastX DNA_Harbinger 328181 328555 62 + . . scaffold416 GLEAN mRNA 325125 329486 0.999449 + . ID=CGI_10014749; scaffold42592 WUBlastX DNA_Harbinger 95150 95524 53 + . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX DNA_Harbinger 109863 110102 49 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_Harbinger 524274 524489 57 + . . scaffold99 GLEAN mRNA 524280 524582 0.618241 + . ID=CGI_10021210; scaffold933 WUBlastX DNA_TcMar-Marin 141940 142191 45 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_TcMar-Marin 1136416 1136643 31 - . . . . . -1 -1 -1 . . . scaffold42528 WUBlastX LTR_ERV1 144171 144251 44 + . . scaffold42528 GLEAN mRNA 136401 146936 0.889923 + . ID=CGI_10007210; scaffold980 WUBlastX LINE_L1-Tx1 281622 281801 66 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LINE_L1-Tx1 422430 422702 64 + . . . . . -1 -1 -1 . . . scaffold1706 WUBlastX DNA_Kolobok-Hyd 4097 4237 34 - . . . . . -1 -1 -1 . . . scaffold1706 WUBlastX DNA_Kolobok-Hyd 4467 4691 21 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX DNA_Kolobok-Hyd 203488 204075 52 + . . scaffold1449 GLEAN mRNA 203791 204087 0.776794 + . ID=CGI_10010696; scaffold1352 WUBlastX LTR_Gypsy 22299 22346 22 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LTR_ERV1 37599 37994 41 + . . scaffold236 GLEAN mRNA 37193 44540 0.565289 + . ID=CGI_10018135; scaffold337 WUBlastX LINE_Penelope 996018 996221 64 - . . . . . -1 -1 -1 . . . scaffold39368 WUBlastX LINE_RTE-X 2159 2308 25 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LINE_RTE-X 97180 97326 20 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LINE_RTE-X 97328 97396 33 - . . . . . -1 -1 -1 . . . scaffold32618 WUBlastX LINE_RTE-X 1126 1389 46 + . . . . . -1 -1 -1 . . . scaffold35272 WUBlastX LINE_RTE-X 7656 7805 56 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 617134 617274 22 - . . . . . -1 -1 -1 . . . C26918 WUBlastX DNA_TcMar-Tc1 631 1017 61 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_R1 424141 424203 26 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold1573 WUBlastX LINE_L2 39997 40113 21 - . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LINE_CR1-L2 146429 146662 73 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_I 180872 181006 37 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Harbinger 304965 305234 23 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Gypsy 22047 22247 22 + . . . . . -1 -1 -1 . . . C28808 WUBlastX LTR_Gypsy 2812 3129 75 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_L1-Tx1 160862 161176 31 + . . . . . -1 -1 -1 . . . scaffold40564 WUBlastX LINE_RTE-X 29402 29560 32 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-X 83261 83524 20 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_RTE-BovB 90273 90635 31 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_Rex-Babar 239783 240001 32 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-BovB 438187 438477 31 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-BovB 438187 438477 31 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1454 WUBlastX DNA_TcMar-Tc1 8764 9120 37 - . . scaffold1454 GLEAN mRNA 4447 15298 0.999999 - . ID=CGI_10004310; scaffold1402 WUBlastX LINE_L1-Tx1 133780 133881 32 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_CR1-L2 274160 274303 52 + . . . . . -1 -1 -1 . . . scaffold1052 WUBlastX LINE_L2 75044 75394 87 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold1560 WUBlastX LINE_CR1 240406 240738 95 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Copia 303447 303557 40 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_hAT-Tip100 34856 35092 29 - . . . . . -1 -1 -1 . . . scaffold42236 WUBlastX DNA_hAT 132561 132698 68 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold1174 WUBlastX DNA_Harbinger 975569 975712 77 + . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 975896 975979 24 + . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold492 WUBlastX DNA_Harbinger 980326 980487 42 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_Harbinger 999927 1000064 61 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_IS4EU 851189 851383 76 + . . scaffold601 GLEAN mRNA 851147 851398 1 + . ID=CGI_10026850; scaffold85 WUBlastX LINE_R2-Hero 445988 446059 26 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX DNA_Kolobok 500324 500467 76 + . . . . . -1 -1 -1 . . . C23120 WUBlastX LINE_Penelope 664 834 75 - . . . . . -1 -1 -1 . . . scaffold43396 WUBlastX LINE_RTE-BovB 199408 199650 101 + . . . . . -1 -1 -1 . . . scaffold68 WUBlastX LINE_RTE-X 12 245 64 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_RTE-X 921766 921948 62 + . . . . . -1 -1 -1 . . . scaffold477 WUBlastX LINE_RTE-X 50770 51054 71 - . . scaffold477 GLEAN mRNA 46689 64755 0.855741 + . ID=CGI_10012309; scaffold1318 WUBlastX DNA_Maverick 166923 167213 31 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 193324 193476 23 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold1566 WUBlastX LINE_RTE-X 17785 17976 65 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 405466 405594 28 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 405602 405748 61 - . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX LINE_RTE-X 30358 30744 21 - . . . . . -1 -1 -1 . . . scaffold35806 WUBlastX LINE_L1-Tx1 26304 26576 41 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_TcMar-Tc1 275556 275648 24 + . . scaffold385 GLEAN mRNA 273365 289522 0.998167 - . ID=CGI_10011601; scaffold878 WUBlastX LINE_L1-Tx1 42946 43116 83 - . . . . . -1 -1 -1 . . . scaffold907 WUBlastX LTR_Pao 12758 12862 22 + . . scaffold907 GLEAN mRNA 12639 12941 0.44891 + . ID=CGI_10003557; scaffold42570 WUBlastX LINE_L2 16581 16922 60 + . . scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold38638 WUBlastX LINE_L2 56694 57188 88 + . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L2 11408 11716 59 - . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_Gypsy 96076 96339 23 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_R2-Hero 887370 887567 62 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 86706 86897 54 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 611466 611684 66 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold383 WUBlastX LINE_RTE-X 824732 824905 29 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 825388 825561 29 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_Maverick 73435 73683 90 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_ERVK 550818 551312 106 + . . scaffold591 GLEAN mRNA 550671 550889 0.638045 + . ID=CGI_10027574; scaffold1230 WUBlastX DNA_TcMar-Tc1 93982 94218 34 + . . . . . -1 -1 -1 . . . scaffold148 WUBlastX LTR_Gypsy-Cigr 100295 100549 99 + . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_L2 316986 317060 21 + . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX DNA_MuDR 63809 63976 80 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold1665 WUBlastX LTR_Ngaro 235127 235429 91 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX RC_Helitron 226405 226494 36 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold709 WUBlastX LTR_Gypsy 84547 84690 78 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Gypsy 270078 270824 76 + . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold681 WUBlastX LINE_Jockey 297160 297363 42 + . . . . . -1 -1 -1 . . . scaffold855 WUBlastX DNA_Maverick 2320 3141 74 + . . scaffold855 GLEAN mRNA 754 11189 0.999983 + . ID=CGI_10001160; scaffold37788 WUBlastX LINE_RTE-X 42339 42413 56 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-X 953397 953675 62 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_L1-Tx1 32611 33075 48 - . . scaffold1794 GLEAN mRNA 20538 42560 0.51959 + . ID=CGI_10019565; scaffold43182 WUBlastX LTR_Gypsy-Cigr 197640 197837 97 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Pao 515153 515593 116 + . . scaffold461 GLEAN mRNA 510838 522193 0.712865 + . ID=CGI_10020118; scaffold99 WUBlastX LINE_L2 139007 139717 43 + . . . . . -1 -1 -1 . . . scaffold40068 WUBlastX LINE_CR1-L2 69996 70844 20 - . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_CR1-L2 77944 78195 54 + . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX DNA_Crypton 176988 177320 89 - . . . . . -1 -1 -1 . . . scaffold674 WUBlastX LTR_Ngaro 12178 12813 69 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold695 WUBlastX LTR_Gypsy-Cigr 364733 364906 107 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX RC_Helitron 116057 116308 136 + . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_IS4EU 111654 111854 91 + . . . . . -1 -1 -1 . . . C34310 WUBlastX DNA_Kolobok-Hyd 1387 1566 28 - . . . . . -1 -1 -1 . . . scaffold1812 WUBlastX LINE_L1 39409 39927 81 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-BovB 425718 426176 59 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-BovB 426561 426839 43 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 55993 56751 67 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-X 194817 195155 71 - . . . . . -1 -1 -1 . . . scaffold493 WUBlastX LINE_RTE-X 369 737 61 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_RTE-X 645923 646378 39 + . . . . . -1 -1 -1 . . . C30806 WUBlastX DNA_TcMar-Tc1 5742 5954 117 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_TcMar-Tc1 58961 59146 29 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_TcMar-Tc1 59344 59634 65 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1110858 1110902 21 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_Rex-Babar 55751 55837 27 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L1 391736 391876 23 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_CR1 614970 615494 39 - . . . . . -1 -1 -1 . . . scaffold41054 WUBlastX DNA_hAT-Tip100 20144 20590 101 - . . scaffold41054 GLEAN mRNA 15508 39181 0.98779 - . ID=CGI_10004673; scaffold919 WUBlastX DNA_Harbinger 44831 44902 41 - . . . . . -1 -1 -1 . . . scaffold919 WUBlastX DNA_Harbinger 44908 45015 93 - . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_L1 30932 31243 39 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_Penelope 240395 240985 55 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold13 WUBlastX LINE_RTE-X 41905 42027 27 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX LINE_RTE-X 42114 42659 57 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 268441 268614 83 + . . scaffold43726 GLEAN mRNA 249575 275240 0.78038 + . ID=CGI_10012028; scaffold1209 WUBlastX DNA_Maverick 53959 54558 126 + . . . . . -1 -1 -1 . . . C13424 WUBlastX LTR_Pao 11 217 123 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_CR1 216807 217226 89 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold101 WUBlastX LINE_L2 615509 616165 21 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 384081 384137 20 + . . . . . -1 -1 -1 . . . C29010 WUBlastX LTR_DIRS 5048 5596 112 + . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_Harbinger 266706 266864 85 - . . scaffold1 GLEAN mRNA 264014 267684 0.995923 + . ID=CGI_10013474; scaffold1500 WUBlastX DNA_Harbinger 143601 143672 39 + . . . . . -1 -1 -1 . . . scaffold139 WUBlastX LINE_L1 75148 75447 134 + . . . . . -1 -1 -1 . . . C32578 WUBlastX LINE_L1 8892 9518 98 + . . C32578 GLEAN mRNA 9396 9944 0.649383 + . ID=CGI_10000916; scaffold311 WUBlastX LINE_RTE-X 6459 6872 130 - . . . . . -1 -1 -1 . . . scaffold929 WUBlastX LINE_RTE-X 24127 24495 78 - . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LINE_L1-Tx1 8043 8828 114 - . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX DNA_hAT-Tip100 2533 2727 34 + . . . . . -1 -1 -1 . . . scaffold37080 WUBlastX DNA_Harbinger 32864 33112 42 - . . . . . -1 -1 -1 . . . scaffold40868 WUBlastX LINE_L1 65600 65938 135 + . . . . . -1 -1 -1 . . . scaffold41316 WUBlastX LINE_L1 66094 66834 116 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Kolobok 587374 587454 24 - . . scaffold1532 GLEAN mRNA 577371 590809 0.942324 - . ID=CGI_10028257; scaffold1532 WUBlastX DNA_Kolobok 587688 587897 92 - . . scaffold1532 GLEAN mRNA 577371 590809 0.942324 - . ID=CGI_10028257; C32888 WUBlastX LINE_L2 12122 12676 80 - . . . . . -1 -1 -1 . . . scaffold452 WUBlastX LINE_L1 143375 143533 20 + . . . . . -1 -1 -1 . . . scaffold35358 WUBlastX LINE_RTE-X 8727 9335 87 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 708700 709200 62 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_R2 87570 87653 20 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1-Tx1 182410 182514 47 - . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_L1-Tx1 196960 197313 88 - . . scaffold400 GLEAN mRNA 195909 223191 0.813725 - . ID=CGI_10011437; scaffold1403 WUBlastX LTR_Gypsy 36310 37356 109 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy-Cigr 241321 242223 81 - . . . . . -1 -1 -1 . . . scaffold487 WUBlastX LINE_Jockey 8864 9112 90 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_RTE-X 215247 215468 107 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258029 258181 63 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258259 258345 32 - . . . . . -1 -1 -1 . . . C31724 WUBlastX LTR_Gypsy 2768 4060 803 - . . . . . -1 -1 -1 . . . C31724 WUBlastX LTR_Gypsy 4217 4441 162 - . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_L1 5065 5400 25 - . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_L1 5358 6344 33 - . . . . . -1 -1 -1 . . . C33244 WUBlastX LINE_RTE-X 4849 6711 763 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 242730 242864 36 + . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_L2 185250 186302 59 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold1101 WUBlastX LINE_CR1 265066 265314 76 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Ngaro 89655 89864 47 - . . scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold896 WUBlastX LTR_Ngaro 23554 23715 42 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LTR_Ngaro 23744 23917 65 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L2 20431 21000 110 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold38006 WUBlastX RC_Helitron 1664 1843 35 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX DNA_Harbinger 130077 130199 74 - . . scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 130077 130199 74 - . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold41560 WUBlastX DNA_Kolobok 78385 78627 131 + . . scaffold41560 GLEAN mRNA 78173 78648 1 + . ID=CGI_10005281; C10973 WUBlastX LTR_Gypsy 3 167 186 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 573933 574451 122 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 175945 176142 31 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 177101 177340 22 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_Maverick 561733 562014 134 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L1-Tx1 284461 285057 75 - . . . . . -1 -1 -1 . . . scaffold1039 WUBlastX LINE_L1-Tx1 66 401 112 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_L1-Tx1 280671 280916 85 + . . scaffold767 GLEAN mRNA 267592 288448 0.433091 + . ID=CGI_10014846; scaffold126 WUBlastX LTR_Gypsy 146798 147130 95 + . . . . . -1 -1 -1 . . . scaffold31538 WUBlastX DNA_Maverick 5809 6096 91 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold728 WUBlastX LTR_Gypsy 281158 282327 531 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1166488 1168707 1014 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 328709 329434 163 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LTR_Ngaro 71689 73131 948 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold122 WUBlastX LINE_RTE-X 237853 240240 743 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LTR_Ngaro 71526 71690 106 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold593 WUBlastX LTR_Pao 266125 266172 28 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LINE_L2 43450 44154 114 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_L2 64699 65376 74 + . . scaffold1717 GLEAN mRNA 58116 75262 0.980383 + . ID=CGI_10013391; scaffold962 WUBlastX LINE_CR1-L2 747081 747368 64 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold1581 WUBlastX LINE_L1 1030 1494 46 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_RTE-X 375339 375722 128 - . . scaffold599 GLEAN mRNA 372668 382241 0.88989 - . ID=CGI_10021718; scaffold1597 WUBlastX LINE_RTE-X 72327 72794 112 + . . scaffold1597 GLEAN mRNA 69157 83925 0.999715 - . ID=CGI_10011769; scaffold301 WUBlastX LTR_Ngaro 697593 697817 79 - . . . . . -1 -1 -1 . . . scaffold37722 WUBlastX DNA_Sola 34001 34339 104 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Pao 792282 793115 658 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Pao 193367 193852 129 - . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold1132 WUBlastX LINE_L1 79394 79897 143 + . . scaffold1132 GLEAN mRNA 47693 94911 0.303068 - . ID=CGI_10023311; scaffold39014 WUBlastX LINE_L1 48445 49263 72 + . . . . . -1 -1 -1 . . . scaffold42070 WUBlastX LINE_L1-Tx1 67837 68091 190 - . . scaffold42070 GLEAN mRNA 63527 73059 0.466285 + . ID=CGI_10006078; scaffold54 WUBlastX LINE_RTE-BovB 633199 633450 123 - . . . . . -1 -1 -1 . . . scaffold30814 WUBlastX LINE_RTE-X 7062 7637 101 - . . scaffold30814 GLEAN mRNA 3529 8232 0.998023 - . ID=CGI_10000671; scaffold721 WUBlastX DNA_Maverick 40781 41245 175 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 1176071 1178779 1090 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_RTE-X 577988 580411 1055 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 280536 282038 464 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold276 WUBlastX DNA_IS4EU 27005 27292 73 + . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX LINE_RTE-BovB 16964 17176 27 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1076144 1076266 109 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold1024 WUBlastX DNA_PiggyBac 1076265 1076507 90 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold705 WUBlastX LINE_RTE-X 266827 267594 124 + . . scaffold705 GLEAN mRNA 254129 271765 0.501941 + . ID=CGI_10015510; scaffold100 WUBlastX DNA_TcMar-Tc1 1022222 1022524 189 + . . . . . -1 -1 -1 . . . scaffold35896 WUBlastX LTR_DIRS 1 324 159 + . . . . . -1 -1 -1 . . . scaffold250 WUBlastX DNA_TcMar-Tc1 31040 31312 86 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Pao 580989 582050 165 - . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy 42805 43647 134 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 472904 473212 69 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 95690 96058 214 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 97106 98020 718 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Gypsy 210694 210909 64 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold43680 WUBlastX DNA_hAT-Tip100 173296 173976 66 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LTR_Pao 213821 214180 38 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold728 WUBlastX DNA_En-Spm 437609 437998 175 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX RC_Helitron 18461 18739 25 + . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX DNA_Harbinger 77497 77808 205 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L1 1043320 1043547 26 - . . . . . -1 -1 -1 . . . scaffold33904 WUBlastX LINE_RTE-X 4539 4922 172 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_RTE-X 600989 601372 172 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 44259 44786 132 - . . scaffold681 GLEAN mRNA 43221 46223 0.777767 + . ID=CGI_10014719; scaffold681 WUBlastX LINE_RTE-X 44259 44786 132 - . . scaffold681 GLEAN mRNA 42450 52406 0.356255 - . ID=CGI_10014718; scaffold42166 WUBlastX LINE_RTE-X 3719 4111 212 + . . . . . -1 -1 -1 . . . scaffold1338 WUBlastX LINE_RTE-X 2776 3303 132 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_DIRS 460209 460976 128 - . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX DNA_Academ 8019 8993 354 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 8947 9732 390 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 10028 11089 531 + . . scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 11318 11890 190 + . . . . . -1 -1 -1 . . . scaffold40456 WUBlastX LTR_Pao 89221 91104 91 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1 174141 174446 57 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy 39321 39842 219 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_RTE-X 192050 192466 207 + . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Pao 25991 27730 775 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Gypsy-Cigr 226705 228912 1084 + . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX LINE_L2 101617 102192 210 + . . scaffold1738 GLEAN mRNA 101617 114566 0.999676 + . ID=CGI_10008970; scaffold922 WUBlastX LINE_CR1-L2 1271 1684 60 - . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_CR1-L2 1665 1907 97 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_CR1 41925 43280 75 - . . scaffold1717 GLEAN mRNA 33205 46915 0.558386 + . ID=CGI_10013390; scaffold41898 WUBlastX LTR_Gypsy 102285 102401 62 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 519660 520415 70 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy? 33898 35049 48 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_L1-Tx1 80333 80683 128 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 431954 432295 21 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Ngaro 342653 343252 160 + . . . . . -1 -1 -1 . . . scaffold38608 WUBlastX RC_Helitron 43765 44739 652 - . . . . . -1 -1 -1 . . . scaffold38608 WUBlastX RC_Helitron 44709 46421 953 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LTR_Gypsy 32769 33134 72 - . . scaffold43008 GLEAN mRNA 18841 33811 0.999674 - . ID=CGI_10008458; scaffold43388 WUBlastX LINE_L2 240563 240793 136 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_I 424518 424811 23 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold222 WUBlastX LTR_DIRS 143290 143934 212 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 494421 494720 182 + . . . . . -1 -1 -1 . . . scaffold1643 WUBlastX LTR_Pao 104920 105513 35 + . . scaffold1643 GLEAN mRNA 104668 107388 0.99993 + . ID=CGI_10008364; scaffold847 WUBlastX LINE_CR1 173433 173837 115 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 276975 277031 21 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX RC_Helitron 537296 537388 49 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_RTE-X 652640 653167 83 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 55186 55833 190 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_RTE-X 169685 171085 887 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_RTE-X 171054 171908 543 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_RTE-X 171902 172852 256 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 88698 88934 62 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 89803 91512 460 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1-Tx1 537395 537616 46 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1-Tx1 537652 538011 157 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Kolobok 206290 206607 29 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Kolobok 208534 208731 49 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold43878 WUBlastX LINE_RTE-X 70023 70451 40 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-X 152088 152267 85 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1-Tx1 867720 867944 58 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 350158 350592 41 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_Gypsy-Cigr 246439 249018 1667 - . . scaffold925 GLEAN mRNA 245750 251543 0.996749 - . ID=CGI_10017422; scaffold38876 WUBlastX LTR_Gypsy 27623 28126 45 + . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1-Tx1 13647 13733 32 - . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LINE_CR1-L2 7848 8066 28 + . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LINE_CR1-L2 8365 8655 25 + . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LTR_Ngaro 27780 28049 38 + . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 131298 131687 76 - . . . . . -1 -1 -1 . . . scaffold578 WUBlastX DNA_Kolobok 23961 24203 51 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold42930 WUBlastX LTR_Gypsy 124516 124908 63 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy-Cigr 296806 298551 919 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy-Cigr 299087 300094 620 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy-Cigr 300096 300485 166 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy-Cigr 640599 641111 148 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy-Cigr 641471 641941 113 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 218134 218322 100 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_IS4EU 58891 59064 23 + . . scaffold525 GLEAN mRNA 58067 60404 0.665804 + . ID=CGI_10008573; scaffold41660 WUBlastX LINE_RTE-X 80103 81062 161 - . . scaffold41660 GLEAN mRNA 76250 87688 0.999676 + . ID=CGI_10005399; scaffold716 WUBlastX LINE_RTE-X 3 536 266 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_CR1 399593 399832 62 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 399838 399957 46 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1417 WUBlastX DNA_hAT-hATw 74319 74795 50 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX DNA_Crypton 16282 17298 223 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Ngaro 449799 450680 177 - . . . . . -1 -1 -1 . . . scaffold1133 WUBlastX DNA_Kolobok-IS4 34968 35123 33 + . . . . . -1 -1 -1 . . . scaffold1133 WUBlastX DNA_Kolobok-IS4 35414 36046 196 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX DNA_TcMar-Tc1 120882 121508 136 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_RTE-X 10176 10910 180 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-BovB 13959 14333 134 + . . scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold257 WUBlastX DNA_TcMar-Tc2 474554 475285 277 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Gypsy 154674 155105 156 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Gypsy 158404 158583 127 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 203983 204648 105 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_IS4EU 173633 173905 209 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 458657 458755 28 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 460011 460145 61 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1 210528 210878 81 - . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold654 WUBlastX LTR_Gypsy 62790 65486 2071 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Gypsy 318585 320543 1249 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Gypsy 320597 321067 255 - . . . . . -1 -1 -1 . . . scaffold1033 WUBlastX LINE_RTE-BovB 15685 16032 61 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 313813 317760 2635 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_IS4EU 95062 95520 190 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_CR1 441627 441971 46 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 441575 441886 99 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold425 WUBlastX LINE_Penelope 179882 180244 234 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc1 38442 38714 133 - . . . . . -1 -1 -1 . . . scaffold38448 WUBlastX RC_Helitron 48354 50213 140 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX DNA_Sola 56143 57441 258 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_CR1 422973 423230 94 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 431802 432092 126 + . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LINE_RTE-X 167625 168974 259 - . . . . . -1 -1 -1 . . . C26860 WUBlastX DNA_TcMar-Tc1 2453 3034 317 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 597755 598156 253 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-X 21827 22243 167 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LTR_Gypsy-Cigr 357056 357790 335 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold1213 WUBlastX LTR_Pao 1307225 1307743 32 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Pao 1307990 1308673 323 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 501390 501584 72 - . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX LINE_L2 86753 87343 304 - . . . . . -1 -1 -1 . . . scaffold43170 WUBlastX LINE_RTE-BovB 28705 29094 280 + . . scaffold43170 GLEAN mRNA 562 49035 0.0513125 - . ID=CGI_10009100; C23796 WUBlastX LINE_L2 1547 2428 320 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_hAT 93862 94035 28 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold632 WUBlastX LINE_L2 512635 512727 64 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold576 WUBlastX LTR_Gypsy 147579 147929 117 - . . . . . -1 -1 -1 . . . scaffold41588 WUBlastX LINE_L1 104413 104496 39 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_L1-Tx1 221749 222324 365 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1-Tx1 1048230 1048769 44 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold42592 WUBlastX DNA_IS4EU 145964 146440 83 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LINE_CR1-L2 402597 403682 210 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy 36141 36653 399 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L1-Tx1 1043086 1043502 178 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L1-Tx1 1043567 1044094 234 - . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_RTE-BovB 265181 265597 212 - . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_RTE-BovB 266052 266327 85 - . . . . . -1 -1 -1 . . . scaffold326 WUBlastX LTR_Gypsy 65515 66594 333 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX DNA_TcMar-Tc1 673365 673523 33 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold37424 WUBlastX DNA_Harbinger 11588 12178 320 + . . . . . -1 -1 -1 . . . scaffold37424 WUBlastX DNA_Harbinger 12967 13161 90 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1-Tx1 57510 57995 349 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1-Tx1 58019 58186 64 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_RTE-BovB 482024 482734 277 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 336998 337186 94 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Ngaro 143418 143765 71 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold661 WUBlastX LINE_L1 30612 31331 422 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_TcMar-Tc1 1429 1995 177 - . . . . . -1 -1 -1 . . . scaffold29372 WUBlastX LTR_Ngaro 2871 3071 81 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Gypsy 116402 116596 85 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX DNA_IS4EU 334399 335298 365 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 175933 176025 24 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_RTE-BovB 14172 14915 41 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L2 166257 166958 76 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 276132 276179 20 - . . . . . -1 -1 -1 . . . C34466 WUBlastX LTR_Ngaro 11404 12339 390 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 89233 89364 35 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L1-Tx1 334931 335266 96 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Pao 753773 754660 216 - . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LINE_RTE-X 98142 99344 319 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_DIRS 582211 582705 274 - . . . . . -1 -1 -1 . . . scaffold261 WUBlastX DNA_Harbinger 11894 12022 32 + . . . . . -1 -1 -1 . . . scaffold261 WUBlastX DNA_Harbinger 12250 12744 365 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX DNA_TcMar-Tc1 83473 84264 369 - . . scaffold890 GLEAN mRNA 81187 101968 1 - . ID=CGI_10014464; scaffold177 WUBlastX LTR_Gypsy 371421 372287 565 - . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX LTR_Ngaro 114497 114811 158 + . . . . . -1 -1 -1 . . . C22174 WUBlastX LINE_L1-Tx1 18 1385 423 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LTR_Gypsy 37828 38085 22 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 790665 791003 141 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 791022 791135 74 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX DNA_Academ 132232 132627 147 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX DNA_Academ 132678 133316 229 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX DNA_Academ 133483 134151 184 + . . scaffold396 GLEAN mRNA 133558 133911 0.64028 + . ID=CGI_10018098; scaffold42596 WUBlastX LTR_Gypsy 99706 100401 266 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 240401 241048 110 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 162932 163651 426 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 163755 164219 29 + . . . . . -1 -1 -1 . . . scaffold34224 WUBlastX LTR_Ngaro 12965 13603 99 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 124064 124180 50 - . . . . . -1 -1 -1 . . . scaffold1643 WUBlastX LTR_Pao 184683 185672 572 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_CR1 344751 345122 235 + . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 26384 27499 304 + . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LINE_RTE-X 191682 192149 169 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_RTE-X 188056 189450 526 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LINE_L1-Tx1 329323 329676 145 - . . scaffold43920 GLEAN mRNA 326902 340720 1 - . ID=CGI_10014000; scaffold43920 WUBlastX LINE_L1-Tx1 329600 330397 463 - . . scaffold43920 GLEAN mRNA 326902 340720 1 - . ID=CGI_10014000; scaffold1578 WUBlastX LTR_DIRS 35585 35773 53 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L2 612676 613278 229 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 429089 429229 78 + . . . . . -1 -1 -1 . . . scaffold823 WUBlastX LTR_Gypsy 59441 59995 386 + . . scaffold823 GLEAN mRNA 49313 67666 0.999676 - . ID=CGI_10004169; scaffold1458 WUBlastX LTR_Ngaro 2669 3631 372 - . . . . . -1 -1 -1 . . . scaffold35138 WUBlastX LTR_Gypsy 6257 8224 741 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 640266 642233 741 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 328706 329302 69 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Pao 217034 219055 675 + . . scaffold1448 GLEAN mRNA 205659 222787 0.97529 + . ID=CGI_10011856; C28588 WUBlastX LTR_Gypsy 3800 5707 747 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy 69153 69362 48 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; C35952 WUBlastX LTR_DIRS 19200 20222 782 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1-Tx1 292224 292751 72 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1-Tx1 293488 293982 330 + . . . . . -1 -1 -1 . . . C32054 WUBlastX LTR_Gypsy 41 454 65 + . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LINE_RTE-X 51433 52395 177 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy-Cigr 103438 104895 658 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LTR_Gypsy-Cigr 149561 151117 582 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 128443 128976 158 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 129934 130215 157 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 130486 130878 338 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_CR1-L2 476421 476987 403 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_CR1-L2 477516 477794 106 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold1825 WUBlastX LINE_L2 232262 232624 43 - . . . . . -1 -1 -1 . . . C35952 WUBlastX LINE_L2 2672 2842 36 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold804 WUBlastX LINE_L2 345254 345331 29 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy-Cigr 33024 33251 21 - . . . . . -1 -1 -1 . . . scaffold264 WUBlastX LTR_Gypsy 63160 63261 23 + . . scaffold264 GLEAN mRNA 55806 65386 0.919425 + . ID=CGI_10003463; scaffold43116 WUBlastX LTR_Pao 43074 43307 40 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Pao 80475 80582 20 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Ac 367381 367608 42 + . . . . . -1 -1 -1 . . . scaffold837 WUBlastX DNA_TcMar-IS885 21065 21235 42 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX DNA_hAT 720897 721373 34 - . . scaffold432 GLEAN mRNA 720813 726190 0.996496 - . ID=CGI_10023119; scaffold408 WUBlastX LINE_L2 197597 197677 37 + . . . . . -1 -1 -1 . . . scaffold1767 WUBlastX LTR_Ngaro 222863 223006 51 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 327795 328169 67 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy 26040 26423 66 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_Gypsy 452751 452999 44 - . . scaffold70 GLEAN mRNA 452424 453119 0.996819 - . ID=CGI_10024770; scaffold43066 WUBlastX DNA_Harbinger 95378 95827 53 + . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX DNA_Harbinger 100169 100330 52 - . . . . . -1 -1 -1 . . . scaffold542 WUBlastX DNA_Harbinger 381511 381654 81 - . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX DNA_TcMar-Marin 3593 3694 65 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_IS4EU 162136 162678 73 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1-Tx1 564634 564993 20 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_L1 60496 60600 27 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_CR1 53835 54164 28 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold252 WUBlastX LTR_Ngaro 213975 214103 39 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Tc2 1790793 1791194 74 + . . . . . -1 -1 -1 . . . scaffold40512 WUBlastX DNA_TcMar-Fot1 1826 2242 70 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc2 222569 222769 51 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_Penelope 103422 103769 35 + . . . . . -1 -1 -1 . . . scaffold756 WUBlastX DNA_Maverick 241208 241459 75 + . . scaffold756 GLEAN mRNA 233283 244530 0.261655 + . ID=CGI_10016461; scaffold145 WUBlastX DNA_PiggyBac 809981 810148 69 + . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LINE_RTE-X 316221 316313 32 - . . scaffold1719 GLEAN mRNA 297152 319693 0.889105 - . ID=CGI_10014286; scaffold1307 WUBlastX LINE_RTE-X 437551 437934 77 + . . scaffold1307 GLEAN mRNA 426520 439623 0.999027 + . ID=CGI_10023759; scaffold287 WUBlastX LINE_RTE-X 66583 66927 79 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 166448 166627 21 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 214810 214986 73 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LINE_RTE-X 144220 144693 45 + . . . . . -1 -1 -1 . . . scaffold866 WUBlastX LINE_RTE-BovB 52158 52238 23 - . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LTR_DIRS 61080 61226 69 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX DNA_Sola 11652 11819 52 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX DNA_TcMar-Tigge 86348 86590 26 + . . . . . -1 -1 -1 . . . scaffold1653 WUBlastX DNA_TcMar-Ant1 29741 30106 89 - . . scaffold1653 GLEAN mRNA 29747 39764 0.980452 - . ID=CGI_10002252; scaffold222 WUBlastX Unknown 155120 155215 24 - . . . . . -1 -1 -1 . . . C33496 WUBlastX LINE_CR1-L2 5288 5377 42 + . . . . . -1 -1 -1 . . . scaffold41766 WUBlastX LTR_Gypsy 32263 32484 93 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold1532 WUBlastX DNA_IS4EU 1122300 1122458 28 + . . . . . -1 -1 -1 . . . scaffold1564 WUBlastX DNA_hAT-Ac 107842 107934 22 - . . scaffold1564 GLEAN mRNA 80148 112523 0.650997 - . ID=CGI_10005199; scaffold973 WUBlastX LINE_Penelope 693736 694038 32 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_Penelope 694109 694240 21 + . . . . . -1 -1 -1 . . . scaffold371 WUBlastX DNA_TcMar-Tc1 10670 11152 47 + . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX DNA_Kolobok-Hyd 161460 161804 55 + . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LINE_RTE-X 125544 125858 95 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Maverick 1446148 1446432 62 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-BovB 424566 424628 29 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_RTE-BovB 43933 44265 77 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_Sola 671166 671522 74 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_DIRS 375896 376324 53 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_TcMar-Tc1 23273 23482 70 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_L1-Tx1 190299 190559 39 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_CR1-L2 157249 157662 50 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_CR1-L2 388016 388180 59 - . . scaffold583 GLEAN mRNA 365612 390201 0.692695 - . ID=CGI_10023621; scaffold39900 WUBlastX LINE_CR1 5069 5122 23 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_CR1 39493 39675 63 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L2 233753 234508 43 - . . scaffold149 GLEAN mRNA 233711 233881 0.960172 - . ID=CGI_10025296; scaffold140 WUBlastX LINE_L2 112867 113211 51 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L2 1610519 1610620 32 + . . scaffold150 GLEAN mRNA 1609311 1613969 0.550073 + . ID=CGI_10028691; scaffold1087 WUBlastX LINE_CR1 8727 9248 43 - . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold144 WUBlastX LTR_Gypsy 771576 771920 77 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX RC_Helitron 3737 4465 76 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX RC_Helitron 212382 212618 103 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_Tad1? 184613 185119 68 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold42390 WUBlastX DNA_TcMar-Marin 98287 98475 45 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc2 284939 285169 97 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 864705 864815 28 + . . . . . -1 -1 -1 . . . scaffold645 WUBlastX LINE_Penelope 56503 56904 70 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_PiggyBac 89930 90361 91 + . . . . . -1 -1 -1 . . . C32974 WUBlastX LINE_Proto2 4824 5351 53 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 975120 975362 85 - . . scaffold1532 GLEAN mRNA 970227 975953 0.953998 - . ID=CGI_10028277; scaffold42508 WUBlastX LINE_RTE-X 149165 149401 24 - . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LTR_Gypsy 78107 78460 70 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 112790 112882 34 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1-Tx1 939636 939917 81 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold1020 WUBlastX LINE_L2 197591 197992 68 - . . scaffold1020 GLEAN mRNA 186471 206717 0.999666 - . ID=CGI_10012855; scaffold35104 WUBlastX LTR_Pao 15683 16405 71 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Pao 180471 180935 66 - . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX LTR_ERV1 148354 148851 58 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_TcMar-Marin 90834 90995 21 + . . scaffold22 GLEAN mRNA 89502 123774 0.856288 - . ID=CGI_10028828; scaffold681 WUBlastX LINE_Jockey 249305 249766 70 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_hAT-Tip100 640382 640651 110 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LTR_Gypsy 78041 78463 31 + . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Kolobok 1896 2057 27 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L1 456870 457010 46 - . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LINE_Penelope 36280 36543 101 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_RTE-X 139337 139606 86 + . . scaffold1382 GLEAN mRNA 113082 142955 0.812933 - . ID=CGI_10011173; scaffold33412 WUBlastX LINE_RTE-X 7019 7264 60 + . . . . . -1 -1 -1 . . . scaffold32900 WUBlastX DNA_Sola 9141 9467 91 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_DIRS 76355 76537 52 - . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_TcMar-Tc1 79221 79304 32 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_TcMar-Tc1 99596 99808 34 + . . scaffold43182 GLEAN mRNA 97443 102816 0.800679 + . ID=CGI_10009200; scaffold329 WUBlastX LINE_L1-Tx1 138212 138739 31 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_L2 53331 53579 61 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L2 34057 34272 22 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold1469 WUBlastX DNA_Harbinger 29525 29641 70 + . . . . . -1 -1 -1 . . . scaffold756 WUBlastX DNA_IS4EU 342731 342898 44 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold756 WUBlastX DNA_IS4EU 343080 343727 62 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold443 WUBlastX DNA_IS4EU 480597 480905 96 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1 125817 126035 53 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold1700 WUBlastX LINE_Penelope 56421 56759 74 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_TcMar-Marin 175188 175412 40 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_CR1-L2 13370 13552 95 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_CR1-L2 13756 13989 26 + . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX DNA_hAT 195933 196046 68 - . . scaffold1125 GLEAN mRNA 189933 228052 0.366465 - . ID=CGI_10012338; scaffold784 WUBlastX LINE_L2 433919 434329 20 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX DNA_hAT-Tip100 108840 108911 31 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold40366 WUBlastX LTR_Gypsy-Cigr 49825 50025 57 + . . . . . -1 -1 -1 . . . scaffold36170 WUBlastX LTR_Gypsy 11222 11695 35 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX DNA_Kolobok-IS4 39763 39858 22 - . . . . . -1 -1 -1 . . . scaffold39064 WUBlastX LINE_L2 62483 62815 68 - . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX LINE_Penelope 12180 12656 53 + . . . . . -1 -1 -1 . . . scaffold200 WUBlastX DNA_MuDR 63534 63791 65 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_MuDR 558407 558664 65 + . . . . . -1 -1 -1 . . . C32028 WUBlastX LINE_L1 9095 9328 20 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1112075 1112458 66 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX DNA_Kolobok-Hyd 290346 290435 20 - . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold597 WUBlastX LINE_RTE-BovB 43808 44113 77 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LINE_RTE-BovB 262604 262786 125 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 23443 23679 64 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_RTE-X 144967 145311 63 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_TcMar-ISRm1 274018 274281 114 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Copia 556233 556478 28 + . . scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold363 WUBlastX LINE_CR1 359636 360028 58 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_CR1 1623658 1623723 20 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 66940 67881 47 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy-Cigr 283876 284208 121 + . . . . . -1 -1 -1 . . . scaffold1861 WUBlastX DNA_Crypton 22826 23020 62 + . . scaffold1861 GLEAN mRNA 18142 27610 0.98495 - . ID=CGI_10004668; scaffold926 WUBlastX LTR_Ngaro 190890 191171 92 + . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX DNA_IS4EU 50983 51216 61 - . . . . . -1 -1 -1 . . . scaffold38306 WUBlastX DNA_Harbinger 10233 10745 89 - . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold1711 WUBlastX LINE_Penelope 189633 190424 100 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_IS4EU 854621 855223 74 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Ngaro 126468 126659 53 + . . scaffold1149 GLEAN mRNA 123566 144809 0.531581 + . ID=CGI_10023452; scaffold43608 WUBlastX DNA_TcMar-Marin 15096 15458 83 + . . scaffold43608 GLEAN mRNA 13222 18761 0.825558 - . ID=CGI_10011388; scaffold714 WUBlastX LINE_RTE-BovB 452895 453230 35 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Ngaro 483439 483903 68 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold801 WUBlastX LTR_Ngaro 618370 619143 73 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_CR1-L2 304706 305152 44 - . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 184778 184975 67 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 246105 246380 24 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Gypsy 183216 183932 129 - . . scaffold286 GLEAN mRNA 182912 187198 0.775448 - . ID=CGI_10015964; scaffold170 WUBlastX DNA_Harbinger 123929 124087 43 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 689927 690328 117 + . . . . . -1 -1 -1 . . . scaffold35808 WUBlastX LTR_Gypsy 22287 23066 118 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_RTE-X 174231 174419 34 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Merlin 1035123 1035209 36 - . . . . . -1 -1 -1 . . . scaffold38354 WUBlastX LTR_Gypsy 3358 3576 78 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Ngaro 118939 119508 111 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_Tad1? 52269 52763 44 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_TcMar-Fot1 434116 434271 39 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX DNA_MuDR 93123 93467 101 - . . scaffold252 GLEAN mRNA 89598 102247 0.999676 + . ID=CGI_10010762; C35532 WUBlastX LINE_L1 23526 23576 24 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 2186 2515 121 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 249398 250000 152 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc1 223160 223306 107 - . . scaffold1024 GLEAN mRNA 191784 246938 0.99909 + . ID=CGI_10028528; C33256 WUBlastX LTR_Gypsy-Cigr 8904 9203 99 - . . . . . -1 -1 -1 . . . C33256 WUBlastX LTR_Gypsy-Cigr 9944 10030 24 - . . . . . -1 -1 -1 . . . C33256 WUBlastX LTR_Gypsy-Cigr 10153 10263 53 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_L2 624400 624507 32 - . . scaffold784 GLEAN mRNA 624445 639860 0.999415 + . ID=CGI_10024437; scaffold784 WUBlastX LINE_L2 624519 624824 90 - . . scaffold784 GLEAN mRNA 624445 639860 0.999415 + . ID=CGI_10024437; scaffold70 WUBlastX LTR_Ngaro 318798 319016 67 + . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX DNA_Crypton 95489 95995 71 - . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX DNA_Crypton 96465 97043 71 - . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold274 WUBlastX DNA_IS4EU 367505 367654 88 - . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_TcMar-Fot1 88389 88484 32 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Ngaro 1261973 1262350 145 - . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX LINE_RTE-X 83960 84397 102 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_RTE-X 605442 605957 116 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LINE_RTE-X 173370 173633 43 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 604576 605013 71 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 605034 605309 33 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_RTE-X 107232 107825 30 + . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold43076 WUBlastX DNA_TcMar-Tc1 9730 10167 83 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LTR_Gypsy 282704 282862 45 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_En-Spm 387422 387829 248 + . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LTR_Pao 302363 303130 368 - . . . . . -1 -1 -1 . . . scaffold458 WUBlastX DNA_Sola 63602 64861 620 - . . . . . -1 -1 -1 . . . scaffold458 WUBlastX DNA_Sola 61828 62157 76 - . . . . . -1 -1 -1 . . . scaffold458 WUBlastX DNA_Sola 62734 63315 276 - . . . . . -1 -1 -1 . . . scaffold181 WUBlastX LINE_RTE-X 11076 11303 136 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 32185 32241 31 + . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LTR_Ngaro 71683 71802 81 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_CR1-L2 166329 166850 165 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_DIRS 25138 26409 483 + . . . . . -1 -1 -1 . . . C31510 WUBlastX DNA_Harbinger 8257 9321 1044 - . . . . . -1 -1 -1 . . . scaffold42598 WUBlastX LINE_RTE-X 52516 53160 346 - . . scaffold42598 GLEAN mRNA 51303 78059 0.0124996 + . ID=CGI_10007333; scaffold42598 WUBlastX LINE_RTE-X 53232 54407 626 - . . scaffold42598 GLEAN mRNA 51303 78059 0.0124996 + . ID=CGI_10007333; scaffold602 WUBlastX LTR_Gypsy 86591 87124 161 + . . . . . -1 -1 -1 . . . scaffold42032 WUBlastX DNA_IS4EU 140247 140429 119 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_PiggyBac 115088 115324 87 + . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1-Tx1 45234 45386 33 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 828753 828959 83 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_CR1 50187 50366 30 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 7141 7329 68 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-X 485002 485376 72 + . . . . . -1 -1 -1 . . . C33510 WUBlastX LINE_RTE-X 5171 5305 44 + . . . . . -1 -1 -1 . . . scaffold36202 WUBlastX LTR_Ngaro 20566 20757 34 - . . scaffold36202 GLEAN mRNA 3245 23503 0.999232 + . ID=CGI_10001812; scaffold695 WUBlastX DNA_Sola 240045 240209 50 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_L2 602193 602588 155 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L2 153712 154155 153 - . . . . . -1 -1 -1 . . . C34122 WUBlastX LTR_Gypsy 13061 13282 21 - . . . . . -1 -1 -1 . . . scaffold674 WUBlastX LTR_Ngaro 12160 12567 182 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold1551 WUBlastX LTR_Ngaro 72708 73511 147 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold40680 WUBlastX DNA_TcMar-Tc1 11478 11777 155 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold35796 WUBlastX LINE_L1-Tx1 13786 13971 52 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_L2 28632 28940 29 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 407005 407682 182 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold1097 WUBlastX LINE_RTE-X 797282 797473 30 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 797519 797710 30 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; C32246 WUBlastX DNA_TcMar-Tc1 8855 9070 50 - . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_L1-Tx1 162431 162772 47 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_L2 234003 235172 515 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_L2 235159 235803 543 - . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LINE_L2 18870 19376 37 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold40054 WUBlastX LTR_Ngaro 77502 77957 23 + . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX LTR_Gypsy 5972 6112 34 + . . . . . -1 -1 -1 . . . C32838 WUBlastX DNA_TcMar-Fot1 8834 9628 186 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_TcMar-Tc1 270367 270729 64 + . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX LINE_L1 37379 38479 111 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 441891 442487 27 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold383 WUBlastX RC_Helitron 441390 442379 263 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_En-Spm 720477 721922 140 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_En-Spm 727035 728480 140 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy 38709 38921 160 - . . . . . -1 -1 -1 . . . scaffold441 WUBlastX DNA_IS4EU 49639 50223 118 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1004659 1005261 143 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1 777826 778053 62 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 266648 266992 44 - . . . . . -1 -1 -1 . . . scaffold41560 WUBlastX LINE_RTE-X 109083 109541 111 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold454 WUBlastX LINE_L2 98073 98726 501 - . . scaffold454 GLEAN mRNA 93341 108889 0.996665 - . ID=CGI_10011629; scaffold454 WUBlastX LINE_L2 98723 99685 515 - . . scaffold454 GLEAN mRNA 93341 108889 0.996665 - . ID=CGI_10011629; scaffold454 WUBlastX LINE_L2 99589 100530 301 - . . scaffold454 GLEAN mRNA 93341 108889 0.996665 - . ID=CGI_10011629; scaffold145 WUBlastX LTR_Gypsy 107845 107943 47 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 115381 115584 64 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 115655 115816 38 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_RTE-BovB 12626 13195 173 + . . . . . -1 -1 -1 . . . scaffold39974 WUBlastX LTR_Ngaro 68959 69642 147 + . . scaffold39974 GLEAN mRNA 67732 80297 0.969362 + . ID=CGI_10003760; scaffold40822 WUBlastX LTR_Ngaro 88110 88793 211 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Maverick 124787 125203 184 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX DNA_Sola 432988 433422 205 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Gypsy 103016 104863 1105 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_Gypsy 410081 410635 192 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_Gypsy 411288 413309 1227 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Gypsy 233195 233491 218 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Gypsy 233482 235242 906 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Gypsy 235221 235274 23 - . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LTR_Gypsy-Cigr 543359 543565 75 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX DNA_Merlin 90946 91230 26 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1 1340474 1341199 85 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 188299 188439 55 + . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 27515 27991 172 + . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_CR1-L2 1271 1468 111 - . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LTR_DIRS 4761 5024 206 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_Crypton 986299 986517 67 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_Crypton 986854 987186 143 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX RC_Helitron 278542 279300 147 - . . . . . -1 -1 -1 . . . scaffold43562 WUBlastX DNA_TcMar-Tc1 168745 169059 98 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 168745 169059 98 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold43562 WUBlastX DNA_TcMar-Tc1 169062 169355 56 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 169062 169355 56 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold1064 WUBlastX LINE_RTE-X 139641 139913 53 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_RTE-X 85669 86178 101 + . . scaffold630 GLEAN mRNA 80549 90707 0.970045 - . ID=CGI_10018325; scaffold87 WUBlastX LTR_Gypsy 118164 119003 242 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy-Cigr 43158 43412 118 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy 44268 44375 21 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LINE_L1 329678 330535 207 - . . scaffold43920 GLEAN mRNA 326902 340720 1 - . ID=CGI_10014000; scaffold609 WUBlastX LINE_L1-Tx1 27699 28181 64 + . . . . . -1 -1 -1 . . . scaffold40614 WUBlastX LINE_RTE-BovB 76467 77261 76 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_RTE-X 1044637 1045167 102 + . . scaffold1267 GLEAN mRNA 1030598 1050254 0.995555 + . ID=CGI_10025181; scaffold602 WUBlastX DNA_TcMar-Tc1 723098 723262 54 + . . . . . -1 -1 -1 . . . scaffold39960 WUBlastX LTR_Gypsy-Cigr 21349 24171 1951 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 388306 388497 23 - . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX LINE_L2 238080 238511 201 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold1360 WUBlastX LTR_Gypsy 748030 749037 222 - . . . . . -1 -1 -1 . . . scaffold37426 WUBlastX LTR_DIRS 4795 5301 90 + . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX RC_Helitron 188924 189358 234 + . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L1 828580 828987 82 + . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_L1-Tx1 30698 30853 92 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 700643 700729 76 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_CR1 147810 148427 35 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 19345 20280 197 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LTR_Ngaro 269859 270209 119 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LTR_Ngaro 270804 270998 64 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Ngaro 76018 76131 24 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold335 WUBlastX LTR_DIRS 51229 51369 46 - . . scaffold335 GLEAN mRNA 36330 53474 0.791399 - . ID=CGI_10017083; C30668 WUBlastX LINE_Penelope 6971 7801 220 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_RTE-X 33370 33930 126 + . . scaffold165 GLEAN mRNA 33307 33933 1 + . ID=CGI_10015309; scaffold165 WUBlastX LINE_RTE-X 33915 34010 67 + . . scaffold165 GLEAN mRNA 33307 33933 1 + . ID=CGI_10015309; scaffold1730 WUBlastX LINE_L2 305099 308302 1839 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX DNA_hAT-hATw 258705 259100 112 + . . scaffold1863 GLEAN mRNA 253566 292141 0.240564 - . ID=CGI_10016692; scaffold854 WUBlastX LINE_CR1 614170 614766 245 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_CR1-L2 224743 224826 25 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_DIRS 143461 144033 256 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Ngaro 486237 486332 25 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold1663 WUBlastX DNA_Harbinger 150638 151006 248 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1 213236 213949 240 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-BovB 1043487 1043588 24 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold241 WUBlastX LINE_RTE-X 942403 943134 182 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 931666 932265 244 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 708118 708186 24 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1 602128 602592 155 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 202599 202676 20 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 167552 168040 165 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Gypsy 207124 207372 207 + . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Gypsy 207464 207742 128 + . . . . . -1 -1 -1 . . . scaffold36462 WUBlastX LINE_RTE-X 19543 20247 148 - . . scaffold36462 GLEAN mRNA 15214 26775 0.999351 - . ID=CGI_10001929; scaffold880 WUBlastX LTR_Ngaro 650972 651562 92 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX RC_Helitron 239331 239636 74 + . . scaffold59 GLEAN mRNA 230821 243525 0.988711 - . ID=CGI_10011278; scaffold1492 WUBlastX LINE_L1-Tx1 83833 84219 85 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-X 270546 270794 109 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_CR1 144686 145033 55 - . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX DNA_IS4EU 511314 511739 52 + . . scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold358 WUBlastX LTR_Gypsy 19771 19995 66 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-BovB 184742 185023 241 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_L1-Tx1 148144 148716 68 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_L1-Tx1 149107 149343 108 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_CR1 129100 129528 82 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold191 WUBlastX LINE_RTE-X 554505 555029 196 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold305 WUBlastX LINE_L1-Tx1 141235 141339 24 + . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold1730 WUBlastX LINE_RTE-X 82692 83975 119 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 1335934 1336932 318 - . . . . . -1 -1 -1 . . . scaffold1080 WUBlastX DNA_En-Spm 262475 263020 169 - . . scaffold1080 GLEAN mRNA 255570 275608 0.591325 - . ID=CGI_10012678; scaffold1578 WUBlastX LINE_L2 158440 158544 29 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 437808 437912 44 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_L2 530603 531736 360 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 256258 257418 343 - . . . . . -1 -1 -1 . . . scaffold38292 WUBlastX LTR_Ngaro 36200 36442 43 - . . scaffold38292 GLEAN mRNA 26899 37380 0.771739 - . ID=CGI_10002691; scaffold1 WUBlastX LINE_RTE-X 136141 136299 55 - . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LTR_Ngaro 169019 169984 291 - . . scaffold510 GLEAN mRNA 163291 175111 0.785549 + . ID=CGI_10013769; scaffold410 WUBlastX LINE_L2 265574 265651 22 + . . scaffold410 GLEAN mRNA 261101 270903 0.399222 + . ID=CGI_10020632; scaffold385 WUBlastX DNA_Sola 74389 74616 93 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LINE_L1-Tx1 249300 250361 247 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_CR1 452014 452877 239 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy 281011 281106 20 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok 377054 377245 66 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 361332 361478 105 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Gypsy 224736 225551 273 + . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LTR_Gypsy 132104 132736 496 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L2 104056 104409 81 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 499174 499365 46 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 514470 514607 29 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy-Cigr 195708 196076 244 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_L1 99827 100510 223 + . . scaffold42656 GLEAN mRNA 97324 103656 1 - . ID=CGI_10007415; scaffold42648 WUBlastX LTR_Gypsy 169155 169568 409 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold534 WUBlastX LTR_Gypsy 67262 67864 341 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold39598 WUBlastX DNA_Harbinger 32321 32857 221 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Harbinger 520118 520315 88 + . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Maverick 66328 66417 67 + . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Maverick 66420 66818 182 + . . . . . -1 -1 -1 . . . C31246 WUBlastX LTR_Gypsy-Troyk 3195 3326 47 + . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LTR_Gypsy 135286 135651 37 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LTR_DIRS? 60833 61492 421 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 408782 408958 88 + . . scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold48 WUBlastX LINE_L1-Tx1 143750 143899 96 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_L1 36475 36636 25 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LINE_CR1-L2 402543 403844 161 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_RTE-X 328843 329952 428 - . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_L1-Tx1 26117 26206 20 + . . . . . -1 -1 -1 . . . scaffold32754 WUBlastX LINE_L2 7838 8797 485 - . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_DIRS 216185 217171 474 - . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold40088 WUBlastX LTR_Gypsy 34363 34620 26 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1-Tx1 910763 911269 271 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1-Tx1 911326 912072 259 + . . . . . -1 -1 -1 . . . C31096 WUBlastX LTR_Ngaro 5513 5776 151 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold736 WUBlastX LTR_Gypsy 44791 45660 270 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_TcMar-Marin 402113 402517 229 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_TcMar-Marin 402699 403367 338 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_PiggyBac 371853 373244 482 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_TcMar-Pogo 6456 7502 352 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L1-Tx1 561791 562915 272 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 646988 647458 146 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 87557 88387 115 - . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 88362 90065 400 - . . . . . -1 -1 -1 . . . scaffold41572 WUBlastX LINE_RTE-X 22759 23475 129 + . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LINE_RTE-X 103580 104593 425 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_TcMar-Tc1 287221 287718 151 + . . scaffold591 GLEAN mRNA 266952 289677 0.460588 - . ID=CGI_10027562; scaffold591 WUBlastX DNA_TcMar-Tc1 287726 288232 340 + . . scaffold591 GLEAN mRNA 266952 289677 0.460588 - . ID=CGI_10027562; scaffold266 WUBlastX DNA_Maverick 329326 330078 347 - . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_RTE-X 107342 107767 221 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold1878 WUBlastX LTR_Gypsy 30720 30875 125 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_CR1-L2 7877 8416 119 - . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LINE_RTE-X 124245 124829 307 + . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LINE_RTE-X 125138 125464 60 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Ngaro 224170 224676 389 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 225153 225224 23 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold1821 WUBlastX LTR_DIRS 14305 16119 599 + . . . . . -1 -1 -1 . . . scaffold1290 WUBlastX LTR_Gypsy 10004 10282 41 - . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LINE_L1-Tx1 112896 113459 230 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Harbinger 778454 778576 56 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Harbinger 778945 779073 37 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LINE_L1-Tx1 127093 127266 37 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1 321823 322062 67 + . . . . . -1 -1 -1 . . . C22458 WUBlastX LTR_Ngaro 856 1845 799 - . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX LINE_L1-Tx1 31299 31919 382 + . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX LINE_L1-Tx1 32791 33141 38 + . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX LINE_Penelope 43249 44637 516 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-BovB 1165978 1166613 367 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-BovB 1166619 1167188 236 + . . . . . -1 -1 -1 . . . scaffold37290 WUBlastX LTR_Ngaro 5964 6437 159 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_Ngaro 78367 78468 22 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 701045 701275 60 - . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LINE_RTE-X 52401 53918 643 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 198531 199673 505 - . . . . . -1 -1 -1 . . . C35260 WUBlastX LINE_CR1-L2 1430 1540 70 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_CR1-L2 132599 133069 43 - . . scaffold631 GLEAN mRNA 131392 145592 0.831917 - . ID=CGI_10014172; C26338 WUBlastX LINE_L2 2871 3218 42 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_Copia 123752 123874 21 - . . . . . -1 -1 -1 . . . scaffold35860 WUBlastX LTR_Copia 1974 2123 38 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Gypsy 14117 14698 54 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14117 14698 54 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold481 WUBlastX DNA_TcMar-ISRm1 1038033 1038278 33 - . . scaffold481 GLEAN mRNA 1037973 1041355 0.978909 - . ID=CGI_10027258; scaffold1860 WUBlastX LINE_L2 267588 268013 22 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Ngaro 602440 602637 32 + . . . . . -1 -1 -1 . . . scaffold42604 WUBlastX LTR_DIRS 29126 29245 54 + . . scaffold42604 GLEAN mRNA 28580 37433 1 + . ID=CGI_10007312; scaffold922 WUBlastX DNA_Harbinger 93484 94032 55 - . . scaffold922 GLEAN mRNA 65021 94381 0.690826 - . ID=CGI_10005662; scaffold867 WUBlastX LTR_Gypsy 859897 860064 78 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX DNA_Kolobok-IS4 72177 72689 54 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_hAT-Blackja 310961 311137 39 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LINE_Penelope 182744 183037 31 + . . . . . -1 -1 -1 . . . scaffold38056 WUBlastX LINE_I 45868 45969 21 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_Penelope 405408 405659 61 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold1272 WUBlastX LINE_Penelope 5066 5587 31 + . . . . . -1 -1 -1 . . . scaffold41390 WUBlastX DNA_Kolobok-Hyd 62581 62622 20 - . . . . . -1 -1 -1 . . . scaffold35238 WUBlastX LINE_L1 2311 2385 29 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LINE_L1 40123 40971 25 - . . scaffold141 GLEAN mRNA 34895 61533 0.989288 + . ID=CGI_10006580; scaffold425 WUBlastX LINE_L1 627954 628079 50 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_Penelope 3068 3328 72 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 27537 27677 55 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LINE_RTE-X 112036 112365 44 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 185610 185699 24 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold502 WUBlastX LINE_RTE-X 227330 227548 21 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 86706 87059 30 + . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LINE_RTE-X 233626 233841 44 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 309251 309415 71 + . . scaffold175 GLEAN mRNA 302857 315268 1 + . ID=CGI_10021318; scaffold187 WUBlastX LINE_RTE-X 11153 11386 52 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_RTE-X 359398 359640 33 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX LINE_RTE-X 225575 225751 80 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 363228 363380 81 + . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_RTE-X 601852 602136 52 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 1294993 1295130 36 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-BovB 483435 483629 58 - . . scaffold593 GLEAN mRNA 482551 496845 0.997605 + . ID=CGI_10022532; scaffold1588 WUBlastX LINE_L1? 74421 74927 22 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold35988 WUBlastX DNA_Maverick 26179 26325 66 - . . scaffold35988 GLEAN mRNA 25841 29038 0.999996 - . ID=CGI_10001701; scaffold453 WUBlastX LINE_RTE-X 178344 178484 54 + . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1 121974 122357 32 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold42770 WUBlastX LINE_L1-Tx1 16979 17152 40 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold43574 WUBlastX LINE_L1-Tx1 275204 275347 29 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_hAT-Tip100 141981 142415 49 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_DIRS 360825 360995 52 - . . scaffold621 GLEAN mRNA 360060 382748 0.996965 - . ID=CGI_10017688; scaffold1423 WUBlastX LTR_DIRS 422295 422570 79 + . . . . . -1 -1 -1 . . . scaffold1763 WUBlastX LTR_DIRS 250742 250849 79 + . . . . . -1 -1 -1 . . . C34552 WUBlastX DNA_Crypton 9844 10086 73 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_RTE-BovB 140704 141015 22 + . . . . . -1 -1 -1 . . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6826 6954 70 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LTR_Gypsy? 214754 215482 22 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LTR_Gypsy 32350 32469 24 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LTR_Gypsy 32472 32651 74 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LTR_Gypsy 321921 322220 44 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_I 81932 82660 82 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 309674 309886 22 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LINE_Penelope 344995 345267 56 - . . scaffold705 GLEAN mRNA 340127 351838 0.495675 + . ID=CGI_10015517; scaffold1497 WUBlastX LINE_L1 52170 52775 30 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 347409 347561 24 - . . scaffold149 GLEAN mRNA 308246 356402 0.217101 + . ID=CGI_10025300; scaffold168 WUBlastX DNA_MuDR 178971 179180 56 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold967 WUBlastX LINE_L2 362513 363046 43 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L2 53615 53998 57 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold866 WUBlastX DNA_TcMar-Tc2 47602 47970 89 + . . scaffold866 GLEAN mRNA 47434 48000 0.6496 + . ID=CGI_10004742; scaffold756 WUBlastX DNA_Maverick 196625 196903 45 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 107719 107955 51 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 627507 627824 31 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LINE_RTE-X 67892 68143 69 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LINE_RTE-X 68439 68690 69 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 730132 730293 66 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L1 5116 5511 50 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_hAT-Tip100 1054023 1054388 85 + . . scaffold481 GLEAN mRNA 1047969 1057631 0.5 - . ID=CGI_10027259; scaffold591 WUBlastX LTR_Pao 1300791 1301027 22 - . . . . . -1 -1 -1 . . . scaffold1728 WUBlastX LINE_L2 27373 28047 51 + . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_CR1-L2 86966 87169 77 - . . scaffold922 GLEAN mRNA 65021 94381 0.690826 - . ID=CGI_10005662; scaffold77 WUBlastX LTR_Gypsy 1037420 1037719 77 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX DNA_Harbinger 316525 316677 43 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_IS4EU 430368 430664 83 + . . scaffold1009 GLEAN mRNA 430368 431934 1 + . ID=CGI_10028733; scaffold419 WUBlastX DNA_IS4EU 191225 191440 54 - . . scaffold419 GLEAN mRNA 187518 193297 1 - . ID=CGI_10028330; scaffold86 WUBlastX LINE_L1 834566 834850 46 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LINE_RTE-X 293674 293736 44 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Sola 1213639 1214187 38 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; C28456 WUBlastX DNA_TcMar-Tc1 1684 1878 22 - . . . . . -1 -1 -1 . . . C28456 WUBlastX DNA_TcMar-Tc1 1869 2093 63 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L2 472616 472849 84 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_Academ 109059 109349 49 - . . scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold481 WUBlastX LTR_Gypsy 218912 219181 112 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L2 89203 89349 56 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 188327 188434 32 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_L1 196277 196303 23 + . . scaffold43146 GLEAN mRNA 193579 199513 0.963019 - . ID=CGI_10009047; scaffold35438 WUBlastX DNA_Harbinger 23440 23544 24 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX DNA_TcMar-Tc1 391563 392033 79 - . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_RTE-X 532101 532391 55 + . . . . . -1 -1 -1 . . . scaffold1408 WUBlastX LINE_RTE-X 3606 4085 22 - . . scaffold1408 GLEAN mRNA 1075 10794 0.650712 + . ID=CGI_10000933; scaffold513 WUBlastX LINE_RTE-X 708571 708627 21 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_L1-Tx1 17767 18012 67 - . . scaffold39804 GLEAN mRNA 15936 20719 1 + . ID=CGI_10003618; scaffold681 WUBlastX LINE_L1-Tx1 308656 308781 26 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Pao 48056 48232 102 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_CR1-L2 230125 230271 75 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 210750 211304 79 - . . . . . -1 -1 -1 . . . scaffold1659 WUBlastX DNA_Harbinger 6877 7077 90 + . . scaffold1659 GLEAN mRNA 4365 18372 0.650917 + . ID=CGI_10001326; scaffold102 WUBlastX LINE_Penelope 153788 153937 34 + . . . . . -1 -1 -1 . . . scaffold477 WUBlastX DNA_TcMar-Tc1 121794 122015 41 + . . . . . -1 -1 -1 . . . scaffold424 WUBlastX DNA_Kolobok 125093 125746 51 - . . scaffold424 GLEAN mRNA 124459 130627 0.999672 - . ID=CGI_10014354; scaffold38302 WUBlastX LINE_L1-Tx1 22096 22263 120 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_RTE-X 113412 113603 27 - . . scaffold482 GLEAN mRNA 106791 115709 0.887892 + . ID=CGI_10010996; scaffold3 WUBlastX LTR_Gypsy 462442 462966 92 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1-Tx1 1194273 1194356 31 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1-Tx1 1195244 1195387 32 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258168 258275 52 - . . . . . -1 -1 -1 . . . scaffold33904 WUBlastX LINE_CR1 7345 8016 50 - . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX LINE_L2 20916 21170 41 + . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX LINE_L2 21173 21289 20 + . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX LTR_Ngaro 114876 115277 87 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 292114 292296 39 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold619 WUBlastX LTR_Gypsy 1083472 1083654 39 - . . scaffold619 GLEAN mRNA 1081692 1094410 0.999676 - . ID=CGI_10025803; scaffold441 WUBlastX DNA_IS4EU 49565 49690 35 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1 236442 237074 88 + . . . . . -1 -1 -1 . . . scaffold43786 WUBlastX DNA_TcMar-Tc1 178442 178759 98 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 90578 90733 37 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 492414 492536 30 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_RTE-X 824116 824307 119 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_RTE-X 417703 417954 99 + . . . . . -1 -1 -1 . . . C24582 WUBlastX LINE_L1-Tx1 1491 1772 59 + . . . . . -1 -1 -1 . . . scaffold564 WUBlastX LINE_L1-Tx1 9331 9726 73 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_L2 177180 177452 65 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LINE_L2 152848 152901 21 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_CR1-L2 1087901 1088092 63 + . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold1791 WUBlastX LINE_CR1-L2 156533 156853 63 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_Jockey 295283 295630 35 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_En-Spm 53929 54348 25 - . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold35336 WUBlastX LINE_L1 12773 12820 21 + . . . . . -1 -1 -1 . . . scaffold35336 WUBlastX LINE_L1 13211 13549 117 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1055768 1056043 67 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_TcMar-Tc1 470199 470369 25 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 1009819 1009929 25 + . . . . . -1 -1 -1 . . . C34116 WUBlastX LTR_Gypsy 2332 2514 82 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 103013 103177 41 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L2 197232 197432 51 - . . . . . -1 -1 -1 . . . C34846 WUBlastX LINE_L2 595 1110 81 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LTR_Gypsy 150423 150716 99 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Ngaro 600699 600878 96 + . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_ERV1 36977 37006 22 - . . . . . -1 -1 -1 . . . scaffold37668 WUBlastX DNA_IS4EU 21583 21813 119 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX DNA_IS4EU 68645 69541 93 + . . . . . -1 -1 -1 . . . scaffold43064 WUBlastX DNA_Harbinger 51393 51764 98 - . . scaffold43064 GLEAN mRNA 50628 70232 0.808133 - . ID=CGI_10008627; scaffold1077 WUBlastX DNA_Maverick 499576 499770 111 - . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_RTE-X 185245 185589 39 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_RTE-X 167314 167499 35 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_RTE-BovB 160190 160438 51 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_RTE-BovB 161413 161574 41 - . . . . . -1 -1 -1 . . . scaffold696 WUBlastX LINE_RTE-X 11510 12019 74 + . . scaffold696 GLEAN mRNA 7653 15168 0.999968 + . ID=CGI_10003719; scaffold1858 WUBlastX LINE_L1-Tx1 258995 259117 41 + . . . . . -1 -1 -1 . . . scaffold35574 WUBlastX LINE_L1-Tx1 2960 3283 57 - . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX LINE_CR1-L2 26191 26382 46 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy-Cigr 79803 80291 151 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold1816 WUBlastX LTR_Gypsy-Cigr 322518 322991 155 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_hAT-Tip100? 115383 115631 52 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX DNA_IS4EU 274708 274836 104 + . . . . . -1 -1 -1 . . . C34856 WUBlastX LTR_Gypsy 7723 7962 53 - . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold1403 WUBlastX DNA_PiggyBac 589688 590125 116 - . . . . . -1 -1 -1 . . . scaffold1553 WUBlastX LINE_RTE-X 62345 62533 28 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-BovB 631561 631707 31 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1134217 1134363 45 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1266 WUBlastX LTR_Ngaro 60354 61019 478 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LTR_Gypsy-Cigr 135349 136809 655 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 43884 45020 177 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Pao 75910 77964 955 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LTR_DIRS 467730 467927 106 - . . scaffold1518 GLEAN mRNA 454061 469419 0.622487 + . ID=CGI_10017815; scaffold209 WUBlastX LINE_CR1 78153 78476 145 + . . . . . -1 -1 -1 . . . scaffold1366 WUBlastX DNA_Crypton 163988 164344 122 - . . scaffold1366 GLEAN mRNA 163589 176739 0.942246 + . ID=CGI_10012296; scaffold337 WUBlastX RC_Helitron 224701 225024 41 + . . . . . -1 -1 -1 . . . scaffold194 WUBlastX LINE_R2-Hero 136920 137003 55 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1-Tx1 193162 193410 154 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1235 WUBlastX LINE_L1-Tx1 32897 33454 73 + . . scaffold1235 GLEAN mRNA 16837 34725 0.738057 - . ID=CGI_10011828; scaffold175 WUBlastX LINE_RTE-X 284189 284755 62 + . . . . . -1 -1 -1 . . . scaffold1872 WUBlastX LINE_RTE-X 97629 97961 99 - . . scaffold1872 GLEAN mRNA 81130 113506 0.586599 + . ID=CGI_10007184; scaffold211 WUBlastX LINE_RTE-X 1207061 1207372 167 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_RTE-X 308920 309339 88 + . . scaffold1863 GLEAN mRNA 292710 321956 0.398552 - . ID=CGI_10016693; scaffold358 WUBlastX LINE_RTE-X 415 621 89 - . . . . . -1 -1 -1 . . . C30864 WUBlastX LINE_L1-Tx1 4224 4346 21 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_TcMar-Tc1 694852 695022 25 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_TcMar-Tc1 102884 103054 25 - . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LINE_Penelope 30576 32495 1021 - . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX LINE_RTE-X 130729 132540 932 - . . scaffold43708 GLEAN mRNA 129367 163757 0.948572 + . ID=CGI_10011970; scaffold1708 WUBlastX LINE_L1-Tx1 11810 13873 953 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_CR1 205960 206106 34 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold1456 WUBlastX LTR_Gypsy 118555 118692 34 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-BovB 164713 164991 82 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 150015 150764 475 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_CR1-L2 1085835 1085936 51 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_CR1-L2 325828 326742 110 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_Gypsy 362786 363175 184 + . . . . . -1 -1 -1 . . . scaffold598 WUBlastX DNA_TcMar-Pogo 13715 13834 40 + . . . . . -1 -1 -1 . . . scaffold598 WUBlastX DNA_TcMar-Pogo 13893 14561 81 + . . . . . -1 -1 -1 . . . scaffold41346 WUBlastX DNA_TcMar-Marin 17688 18167 133 - . . scaffold41346 GLEAN mRNA 15464 31699 0.862252 + . ID=CGI_10004998; scaffold40952 WUBlastX DNA_Kolobok 30184 30843 102 + . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX LINE_RTE-X 17800 18027 52 + . . scaffold1663 GLEAN mRNA 14275 33810 0.998969 - . ID=CGI_10009863; scaffold36398 WUBlastX LTR_Gypsy 28221 28799 54 - . . . . . -1 -1 -1 . . . scaffold387 WUBlastX LINE_L2 78456 78713 156 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_L2 293061 293318 156 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold164 WUBlastX LTR_Ngaro 625772 626668 118 + . . . . . -1 -1 -1 . . . scaffold327 WUBlastX LINE_RTE-X 37641 37892 88 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_TcMar-Tc1 165822 165983 93 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_TcMar-Tc1 165983 166180 94 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-X 436458 437708 404 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_CR1 452887 453750 576 + . . scaffold789 GLEAN mRNA 449746 456527 1 + . ID=CGI_10017205; scaffold72 WUBlastX LINE_RTE-X 166904 167125 77 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 167499 168038 31 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_RTE-X 96558 97157 63 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_RTE-X 309639 309815 76 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-BovB 112998 113192 91 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 55426 55497 59 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 55500 55814 201 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 57040 57789 602 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 217382 219013 371 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Ngaro 270206 270637 180 + . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Ngaro 57855 58787 67 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold43608 WUBlastX LTR_Gypsy 204223 204777 113 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 110656 110916 125 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 110975 111319 53 - . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1 198589 198741 61 + . . . . . -1 -1 -1 . . . scaffold41380 WUBlastX LINE_RTE-BovB 66654 66746 41 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 68021 68089 31 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold1767 WUBlastX LINE_RTE-BovB 93098 93199 23 + . . scaffold1767 GLEAN mRNA 93032 98652 0.99967 + . ID=CGI_10016907; scaffold1623 WUBlastX DNA_Maverick 46723 46869 93 - . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX DNA_Maverick 46960 47316 118 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_L1-Tx1 207403 207696 182 + . . . . . -1 -1 -1 . . . scaffold1595 WUBlastX LTR_Gypsy 3298 3945 287 - . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LTR_Pao 79405 80487 992 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold1619 WUBlastX LINE_L1 8697 8888 39 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1 22813 23004 39 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Ngaro 133479 133895 205 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_L1-Tx1 146273 147334 661 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 147693 148022 72 + . . scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold1532 WUBlastX LTR_Gypsy 370317 370964 287 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_CR1-L2 121789 122133 83 - . . . . . -1 -1 -1 . . . C31884 WUBlastX LTR_Gypsy 1684 1941 84 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_TcMar-Tc1 174656 175300 181 - . . scaffold772 GLEAN mRNA 173305 179319 1 + . ID=CGI_10016584; scaffold36898 WUBlastX DNA_hAT-Tip100 2431 2793 95 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_Crypton 243848 244318 69 - . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold933 WUBlastX LTR_Gypsy 209126 209305 64 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 100227 100451 102 - . . . . . -1 -1 -1 . . . scaffold43302 WUBlastX DNA_Kolobok-IS4 15401 15583 24 + . . scaffold43302 GLEAN mRNA 6372 24073 0.277786 - . ID=CGI_10009755; scaffold1817 WUBlastX LINE_L1 99091 99198 23 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_L1 100151 100228 44 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 472323 472892 181 + . . scaffold1703 GLEAN mRNA 460683 476446 0.999324 - . ID=CGI_10023062; C36014 WUBlastX DNA_TcMar-Tc2 28045 28443 76 - . . . . . -1 -1 -1 . . . C33482 WUBlastX LINE_CR1-L2 3360 3623 46 + . . . . . -1 -1 -1 . . . C33482 WUBlastX LINE_CR1-L2 4102 4389 93 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 188919 189164 73 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188919 189164 73 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold41390 WUBlastX LTR_Gypsy-Cigr 70786 71469 199 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX DNA_Crypton 190587 191000 84 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX DNA_Crypton 191123 191293 53 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX DNA_Crypton 191955 192227 59 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX RC_Helitron 152115 152819 233 - . . . . . -1 -1 -1 . . . scaffold1058 WUBlastX LTR_Gypsy 38489 40123 515 - . . . . . -1 -1 -1 . . . scaffold1058 WUBlastX LTR_Gypsy 40352 42148 1070 - . . . . . -1 -1 -1 . . . C32240 WUBlastX LTR_DIRS 10756 11010 92 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_RTE-X 189862 189912 20 + . . . . . -1 -1 -1 . . . scaffold35230 WUBlastX LTR_Ngaro 20609 21712 144 - . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LTR_DIRS 462769 463308 136 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_DRE 127868 127942 23 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold42214 WUBlastX LTR_Gypsy 15726 15875 23 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LTR_DIRS 148929 149618 156 - . . scaffold1882 GLEAN mRNA 139430 150969 0.999129 + . ID=CGI_10010506; scaffold143 WUBlastX LTR_Gypsy 73259 75634 2051 + . . scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold168 WUBlastX LINE_L1 929962 930087 28 + . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LINE_Penelope 6650 6778 47 + . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX LINE_RTE-X 59337 60590 176 - . . . . . -1 -1 -1 . . . scaffold715 WUBlastX LTR_Gypsy 17726 17980 21 + . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX LTR_Gypsy 121010 124432 2191 - . . . . . -1 -1 -1 . . . scaffold31378 WUBlastX LINE_L2 6088 6702 246 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LTR_Gypsy 280819 281007 44 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold1627 WUBlastX LTR_Gypsy 37620 37727 36 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 31850 31999 39 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_Kolobok-IS4 59853 60392 269 + . . scaffold525 GLEAN mRNA 58067 60404 0.665804 + . ID=CGI_10008573; scaffold1382 WUBlastX LINE_L1 52836 53180 83 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L1 334054 334119 23 + . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_RTE-BovB 198272 199717 259 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 596872 596991 68 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold208 WUBlastX LINE_RTE-BovB 33669 33935 193 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_RTE-X 217204 217428 87 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LTR_Gypsy 32372 32455 39 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_L1 204927 205184 88 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_RTE-X 236491 236655 74 - . . . . . -1 -1 -1 . . . scaffold34740 WUBlastX LTR_Ngaro 7681 7785 81 - . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_RTE-X 86542 86949 205 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 87760 87981 20 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1097 WUBlastX LINE_L1-Tx1 155308 155655 60 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LTR_Gypsy 133284 135587 1393 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LTR_Gypsy 135563 137092 1162 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 516885 516986 54 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 217611 217922 28 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX DNA_Sola 57503 57760 46 + . . . . . -1 -1 -1 . . . scaffold1489 WUBlastX RC_Helitron 69762 71834 304 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_CR1 435525 437027 244 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_Harbinger 17090 17311 68 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 18342 18506 151 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1009 WUBlastX LINE_RTE-X 458360 458503 55 + . . . . . -1 -1 -1 . . . scaffold39790 WUBlastX LINE_CR1-L2 4383 4943 325 + . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Gypsy 65317 65403 32 - . . . . . -1 -1 -1 . . . C29010 WUBlastX LTR_DIRS 5551 6129 344 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 201015 201365 64 - . . . . . -1 -1 -1 . . . scaffold1513 WUBlastX DNA_IS 545 1522 255 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Ngaro 151217 151942 217 + . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX DNA_TcMar-Marin 78301 78915 298 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_Maverick 11015 11719 276 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_NOF 145566 146387 223 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_NOF 146464 147090 29 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Pao 441864 442571 336 + . . scaffold150 GLEAN mRNA 440940 442586 0.995484 + . ID=CGI_10028609; scaffold490 WUBlastX DNA_Harbinger 200690 200812 49 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_Harbinger 201287 201586 70 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_DIRS 252999 253778 119 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 253767 254000 110 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 254000 254143 33 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold1599 WUBlastX LINE_L1-Tx1 598473 598544 36 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_CR1 51710 52060 253 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold1154 WUBlastX LTR_Gypsy 390988 391251 122 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 115268 115516 99 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 115543 115992 152 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 634035 634793 74 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_CR1 399043 399291 60 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold973 WUBlastX LTR_Gypsy 254343 254567 52 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_L1-Tx1 501592 502185 241 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_IS4EU 597672 598823 294 - . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX DNA_IS4EU 65906 67057 294 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 37612 38121 245 - . . . . . -1 -1 -1 . . . scaffold43210 WUBlastX DNA_TcMar-Tc1 190706 190918 53 + . . scaffold43210 GLEAN mRNA 171001 198787 0.693179 - . ID=CGI_10009448; scaffold38654 WUBlastX LINE_Penelope 33356 33766 82 - . . . . . -1 -1 -1 . . . scaffold129 WUBlastX LINE_L1-Tx1 46089 47090 115 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_L1-Tx1 190181 190837 308 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold145 WUBlastX LTR_ERV1 104564 105400 152 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 1076410 1076571 48 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_RTE-X 3308 3538 139 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_RTE-X 4192 4896 287 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L2 554174 555094 329 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 1110583 1110918 109 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 1112145 1112564 81 - . . scaffold1532 GLEAN mRNA 1112130 1112501 0.979648 - . ID=CGI_10028281; scaffold143 WUBlastX LINE_L1-Tx1 211891 212289 78 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold90 WUBlastX LTR_Gypsy 134015 134803 482 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LTR_Ngaro 288015 288917 416 - . . . . . -1 -1 -1 . . . scaffold598 WUBlastX LTR_Ngaro 3064 3966 416 + . . scaffold598 GLEAN mRNA 1303 4771 0.992797 + . ID=CGI_10001778; scaffold269 WUBlastX LTR_Ngaro 198354 199337 466 - . . scaffold269 GLEAN mRNA 192453 200699 0.999993 + . ID=CGI_10018996; scaffold485 WUBlastX LINE_RTE-X 869248 869520 136 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-X 870203 870376 22 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_Academ 258409 258930 121 + . . scaffold338 GLEAN mRNA 258409 258933 0.999999 + . ID=CGI_10011189; scaffold42022 WUBlastX DNA_TcMar-Tc1 107219 107422 128 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX DNA_TcMar-Tc1 107610 107996 192 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L1 90484 90618 29 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L2 737068 737349 101 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold469 WUBlastX LINE_CR1 330263 330793 313 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_RTE-BovB 369286 369621 191 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 588303 588785 77 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_En-Spm 194212 194487 182 - . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L1 5787 6419 30 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold678 WUBlastX DNA_Harbinger 746555 746917 274 - . . scaffold678 GLEAN mRNA 740088 752113 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 746555 746917 274 - . . scaffold678 GLEAN mRNA 742489 752098 0.987721 + . ID=CGI_10026378; scaffold678 WUBlastX DNA_Harbinger 747761 747919 111 - . . scaffold678 GLEAN mRNA 740088 752113 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 747761 747919 111 - . . scaffold678 GLEAN mRNA 742489 752098 0.987721 + . ID=CGI_10026378; scaffold37900 WUBlastX DNA_IS4EU 29448 30353 436 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold471 WUBlastX DNA_IS4EU 325404 326162 469 + . . scaffold471 GLEAN mRNA 325188 326174 0.636168 + . ID=CGI_10027009; scaffold39274 WUBlastX LINE_CR1 29443 29613 140 - . . . . . -1 -1 -1 . . . scaffold39274 WUBlastX LINE_CR1 29431 29685 109 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 737648 737941 156 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 738927 739658 129 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX LINE_RTE-X 77295 78065 175 + . . scaffold1888 GLEAN mRNA 63277 86416 0.994729 - . ID=CGI_10013295; scaffold473 WUBlastX LINE_L2 109127 109882 442 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 19072 19383 193 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 494861 496927 450 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-X 10581 11279 176 - . . . . . -1 -1 -1 . . . scaffold33876 WUBlastX DNA_Maverick 9491 9832 189 - . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_Maverick 1 546 364 - . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_Maverick 2233 2925 168 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_L1-Tx1 7514 8035 220 + . . . . . -1 -1 -1 . . . scaffold39582 WUBlastX LINE_L1-Tx1 60595 61191 131 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L1-Tx1 265648 266046 153 - . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LTR_Gypsy 68184 69080 747 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 181529 181663 97 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 183129 183311 32 + . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX DNA_IS4EU 43413 43556 87 - . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX DNA_IS4EU 43559 44440 625 - . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX DNA_IS4EU 45349 45396 32 - . . . . . -1 -1 -1 . . . scaffold38116 WUBlastX LINE_L1-Tx1 13233 14186 352 - . . . . . -1 -1 -1 . . . scaffold38116 WUBlastX LINE_L1-Tx1 14156 14479 170 - . . . . . -1 -1 -1 . . . C34122 WUBlastX LTR_Gypsy 11348 12016 291 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy 66667 66840 92 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold36906 WUBlastX LTR_DIRS 16256 17179 416 - . . scaffold36906 GLEAN mRNA 239 18767 0.841273 + . ID=CGI_10002185; scaffold36906 WUBlastX LTR_DIRS 17236 17844 428 - . . scaffold36906 GLEAN mRNA 239 18767 0.841273 + . ID=CGI_10002185; scaffold535 WUBlastX LTR_Gypsy 287409 287705 22 + . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LTR_DIRS 350 1150 273 + . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LTR_DIRS 1696 2751 541 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_RTE-BovB 14101 14235 147 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 232080 232334 150 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_CR1 28840 29403 69 + . . . . . -1 -1 -1 . . . scaffold96 WUBlastX LINE_CR1 3860 4060 52 + . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LINE_CR1 141828 142391 69 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_CR1 51481 51633 85 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_hAT-Tip100 83894 84490 34 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_TcMar-Fot1 1863538 1863921 48 + . . scaffold22 GLEAN mRNA 1863347 1863687 0.647996 + . ID=CGI_10028937; scaffold22 WUBlastX DNA_TcMar-Fot1 1863538 1863921 48 + . . scaffold22 GLEAN mRNA 1863760 1864161 0.544455 + . ID=CGI_10028938; scaffold712 WUBlastX LTR_Gypsy 134773 135090 35 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 706581 706919 33 + . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX LINE_L2 126057 126560 33 - . . . . . -1 -1 -1 . . . scaffold1200 WUBlastX LINE_L2 35018 35404 39 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Gypsy 317342 317488 66 - . . . . . -1 -1 -1 . . . scaffold917 WUBlastX DNA_Harbinger 154683 154859 48 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold298 WUBlastX DNA_IS4EU 451468 451968 34 + . . scaffold298 GLEAN mRNA 451450 453005 0.901953 + . ID=CGI_10018832; scaffold298 WUBlastX DNA_IS4EU 452298 452423 24 + . . scaffold298 GLEAN mRNA 451450 453005 0.901953 + . ID=CGI_10018832; C29554 WUBlastX DNA_IS4EU 2580 3119 53 + . . . . . -1 -1 -1 . . . C29554 WUBlastX DNA_IS4EU 3452 3577 24 + . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX DNA_hAT-Ac 53180 53332 49 - . . scaffold1898 GLEAN mRNA 46863 55384 1 + . ID=CGI_10012206; scaffold1898 WUBlastX DNA_hAT-Ac 53180 53332 49 - . . scaffold1898 GLEAN mRNA 51712 80901 0.544574 - . ID=CGI_10012207; scaffold35430 WUBlastX LINE_L1-Tx1 16937 17005 20 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_L1 408186 408677 57 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1-Tx1 349148 349249 21 + . . . . . -1 -1 -1 . . . scaffold42236 WUBlastX LINE_L1 20969 21355 34 + . . scaffold42236 GLEAN mRNA 20606 22294 0.783967 + . ID=CGI_10006398; scaffold42236 WUBlastX LINE_L1 20969 21355 34 + . . scaffold42236 GLEAN mRNA 12895 32747 0.500069 - . ID=CGI_10006397; scaffold260 WUBlastX LINE_L2 62702 62884 56 + . . scaffold260 GLEAN mRNA 48314 65715 0.848653 - . ID=CGI_10003729; scaffold630 WUBlastX LINE_L2 352561 352818 38 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold1258 WUBlastX DNA_TcMar-Tc1 526669 526788 48 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Tc2 1790868 1791179 78 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_Penelope 185198 185521 58 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_Penelope 368037 368180 53 + . . . . . -1 -1 -1 . . . C14906 WUBlastX LINE_Penelope 4 258 29 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_Maverick 115876 116022 23 + . . scaffold1730 GLEAN mRNA 113542 117424 0.494862 - . ID=CGI_10012254; scaffold41648 WUBlastX DNA_Maverick 87626 87760 48 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-X 868523 868657 49 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 131947 132222 37 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_RTE-X 395375 395515 45 - . . . . . -1 -1 -1 . . . scaffold764 WUBlastX LINE_RTE-X 20735 21004 32 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 569806 569922 28 - . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_RTE-X 35693 35953 49 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 5087 5269 52 - . . . . . -1 -1 -1 . . . C7307 WUBlastX LINE_RTE-X 3 131 72 + . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_RTE-X 147156 147614 35 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_TcMar-Fot1 754738 754935 32 - . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_L1 442002 442592 29 - . . scaffold381 GLEAN mRNA 430162 460289 0.970742 - . ID=CGI_10017566; scaffold41358 WUBlastX DNA_TcMar-Tc1 111140 111226 29 + . . scaffold41358 GLEAN mRNA 104455 115098 0.650923 - . ID=CGI_10004976; scaffold1870 WUBlastX LTR_Gypsy 333298 333420 20 - . . scaffold1870 GLEAN mRNA 332737 333609 1 - . ID=CGI_10013192; scaffold31 WUBlastX LINE_L1-Tx1 14711 15043 36 - . . scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold271 WUBlastX LINE_L1-Tx1 471220 471414 47 - . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold408 WUBlastX LTR_DIRS 564461 564772 45 - . . scaffold408 GLEAN mRNA 551872 569972 0.499918 - . ID=CGI_10023249; scaffold730 WUBlastX LINE_L2 98942 99031 45 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LINE_L2 345129 345275 34 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_CR1 415156 415227 20 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 218094 218285 67 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Kolobok-IS4 432289 432423 21 - . . . . . -1 -1 -1 . . . scaffold35726 WUBlastX DNA_TcMar-Marin 9919 10047 55 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_IS4EU 2848 2949 30 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold44 WUBlastX LINE_RTE-X 389221 389349 31 + . . scaffold44 GLEAN mRNA 377498 394536 0.863441 - . ID=CGI_10016839; scaffold43526 WUBlastX LINE_RTE-X 38453 38530 59 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold168 WUBlastX DNA_PiggyBac 632409 632501 35 - . . . . . -1 -1 -1 . . . scaffold36278 WUBlastX DNA_PiggyBac 29290 29520 70 - . . scaffold36278 GLEAN mRNA 22300 32002 0.651135 - . ID=CGI_10001848; scaffold241 WUBlastX DNA_TcMar-Fot1 288181 288507 76 - . . scaffold241 GLEAN mRNA 288013 288459 0.999802 - . ID=CGI_10025101; scaffold1020 WUBlastX DNA_hAT-Tip100 326981 327157 34 + . . . . . -1 -1 -1 . . . scaffold1394 WUBlastX LTR_DIRS 2039 2320 54 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LTR_Ngaro 116648 116788 68 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc2 284900 285181 76 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L1-Tx1 1013258 1013434 69 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy-Cigr 350162 350566 79 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_Gypsy 161592 161657 34 - . . scaffold1321 GLEAN mRNA 144678 167818 0.544485 + . ID=CGI_10010664; scaffold150 WUBlastX DNA_IS4EU 1760005 1760328 84 - . . scaffold150 GLEAN mRNA 1752956 1765015 0.80741 + . ID=CGI_10028702; scaffold419 WUBlastX DNA_IS4EU 894743 895069 70 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold772 WUBlastX DNA_hAT-Blackja 242430 242954 58 + . . scaffold772 GLEAN mRNA 238963 261048 0.714694 - . ID=CGI_10016587; scaffold962 WUBlastX DNA_Harbinger 27075 27311 60 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Marin 624302 624427 81 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX DNA_TcMar-Tc1 180587 180706 36 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L2 477835 478089 21 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_Penelope 202521 202688 20 - . . . . . -1 -1 -1 . . . scaffold32618 WUBlastX LINE_RTE-X 1444 1578 31 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 1788 1886 44 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_RTE-X 1289822 1290127 53 - . . scaffold591 GLEAN mRNA 1286959 1291687 1 - . ID=CGI_10027616; scaffold896 WUBlastX LINE_RTE-X 123486 123629 46 + . . scaffold896 GLEAN mRNA 120712 129433 0.394415 + . ID=CGI_10022834; scaffold1665 WUBlastX LINE_RTE-X 395242 395562 24 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 112525 112683 38 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 112704 113060 22 - . . . . . -1 -1 -1 . . . scaffold34696 WUBlastX LINE_RTE-X 14973 15083 37 - . . . . . -1 -1 -1 . . . scaffold34696 WUBlastX LINE_RTE-X 15197 15355 48 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Harbinger 119945 120292 82 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_DIRS 212922 213050 26 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 570621 570764 42 + . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LINE_CR1 62211 62309 24 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold1200 WUBlastX LINE_CR1-L2 102057 102242 116 + . . scaffold1200 GLEAN mRNA 102018 102305 0.618241 + . ID=CGI_10007618; scaffold1450 WUBlastX LINE_L2 6480 6923 34 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_L2 216240 216683 34 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold847 WUBlastX LINE_L2 174028 174282 85 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Gypsy 585775 586464 82 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 217256 217546 77 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX LTR_Gypsy 8295 8417 77 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 746958 747152 50 - . . . . . -1 -1 -1 . . . scaffold276 WUBlastX RC_Helitron 144821 145123 76 - . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LTR_Gypsy 5004 5090 27 - . . . . . -1 -1 -1 . . . C16820 WUBlastX LINE_Penelope 96 320 76 - . . . . . -1 -1 -1 . . . C25804 WUBlastX LINE_RTE-X 1348 1629 95 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LINE_RTE-X 99246 99551 53 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Penelope 181791 181952 78 - . . . . . -1 -1 -1 . . . C24726 WUBlastX DNA_Sola 392 901 64 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L1-Tx1 388766 389119 87 - . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LINE_L1-Tx1 87696 88574 24 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold90 WUBlastX DNA_hAT-Tip100 399186 399938 110 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold502 WUBlastX LINE_L1 76587 76643 23 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold1249 WUBlastX LINE_CR1-L2 353638 354141 60 - . . . . . -1 -1 -1 . . . scaffold39180 WUBlastX LTR_Gypsy 27659 27874 104 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 10058 10468 80 + . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX DNA_IS4EU 218896 219069 50 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_Penelope 459375 459629 55 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_I 415348 415659 32 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold1221 WUBlastX DNA_PiggyBac 512126 512206 37 - . . scaffold1221 GLEAN mRNA 505287 514877 0.549954 - . ID=CGI_10019748; scaffold1897 WUBlastX DNA_PiggyBac 642572 642652 37 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX LINE_RTE-X 368959 369414 49 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Pao 129718 129960 103 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L2 195266 195838 84 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LINE_Jockey 153406 153948 134 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold387 WUBlastX DNA_IS4EU 96864 97250 84 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1 795078 795164 23 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_L1 216182 216277 36 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LINE_RTE-BovB 130099 130743 90 + . . scaffold975 GLEAN mRNA 123992 132770 1 - . ID=CGI_10013325; scaffold247 WUBlastX LINE_RTE-BovB 204567 204740 26 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold1024 WUBlastX DNA_PiggyBac 1074626 1074850 66 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold469 WUBlastX LINE_RTE-X 377063 377347 41 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_RTE-X 377346 377453 44 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_RTE-X 227531 227737 76 + . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX LINE_RTE-X 222848 222955 44 - . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX LINE_RTE-X 222954 223238 41 - . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_RTE-X 78544 78816 73 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_RTE-X 220607 220897 82 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-BovB 1134611 1134787 75 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_CR1 440835 440891 32 + . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX LTR_Ngaro 92024 92113 30 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX RC_Helitron 149373 149684 41 - . . scaffold550 GLEAN mRNA 134556 152020 0.969581 - . ID=CGI_10012490; scaffold43314 WUBlastX DNA_hAT-hATw 155873 156223 33 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_L1 226751 226810 23 + . . . . . -1 -1 -1 . . . scaffold1643 WUBlastX DNA_MuDR 36502 36879 109 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-BovB 61008 61202 57 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_RTE-X 97029 97451 107 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_RTE-X 247750 248001 116 - . . . . . -1 -1 -1 . . . scaffold598 WUBlastX DNA_TcMar-Pogo 13893 14687 79 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Gypsy-Cigr 22785 22943 137 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy-Cigr 281371 281655 151 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold209 WUBlastX DNA_hAT-Tip100 259298 259972 44 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold85 WUBlastX LINE_CR1 607724 608002 142 + . . . . . -1 -1 -1 . . . scaffold40216 WUBlastX DNA_Academ 32108 32401 63 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Crypton 1210676 1210969 70 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX DNA_Crypton 1211520 1211816 74 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold831 WUBlastX LTR_Ngaro 76397 76576 64 - . . . . . -1 -1 -1 . . . scaffold1086 WUBlastX LINE_Jockey 102133 102612 104 - . . scaffold1086 GLEAN mRNA 71811 104849 0.15447 + . ID=CGI_10021931; scaffold343 WUBlastX DNA_Kolobok 624008 624271 141 - . . scaffold343 GLEAN mRNA 618238 636839 0.461317 - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Kolobok 624008 624271 141 - . . scaffold343 GLEAN mRNA 618887 626946 0.427987 + . ID=CGI_10021769; scaffold1301 WUBlastX LINE_L1-Tx1 1051998 1052051 24 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 89242 89325 28 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1558 WUBlastX LINE_L1-Tx1 41203 41394 57 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold43122 WUBlastX LINE_L1-Tx1 110317 110805 40 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_RTE-X 163757 163996 50 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Pao 29982 30164 25 + . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold603 WUBlastX LTR_Ngaro 12366 13013 110 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 1137332 1137385 29 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold313 WUBlastX DNA_IS4EU 606738 606872 32 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LTR_Gypsy 254122 254517 74 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_MuDR 345000 345080 25 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_MuDR 345259 345432 91 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX DNA_TcMar-Tc2 248844 249092 54 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 54585 55211 136 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LTR_Gypsy 166710 167264 122 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX DNA_Maverick 41775 42050 43 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LTR_Ngaro 270855 271025 68 - . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_L1 7282 7905 162 - . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX DNA_hAT-Tip100 40445 40837 250 + . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX DNA_hAT-Tip100 40828 41118 188 + . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX DNA_hAT-Tip100 41081 41854 535 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 29688 30473 35 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 692179 693468 682 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 32172 32369 28 - . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX LTR_Gypsy-Cigr 24909 25517 159 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX DNA_Kolobok 784120 784365 98 + . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_L1-Tx1 267590 268060 39 + . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LINE_L1-Tx1 67837 68214 97 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-RTE 94666 95205 101 - . . . . . -1 -1 -1 . . . scaffold38274 WUBlastX LINE_RTE-X 6834 7250 135 + . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LINE_L1-Tx1 50389 50859 92 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 253983 254939 371 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold1098 WUBlastX LTR_Gypsy 153933 156248 903 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_CR1 299344 300306 605 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 241980 242471 45 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 242730 242819 37 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 380714 381157 272 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 382207 383235 419 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_RTE-X 116480 116704 70 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_L1-Tx1 465422 465823 82 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold1484 WUBlastX DNA_Merlin 336878 336955 32 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 637807 638106 87 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold796 WUBlastX LTR_Gypsy 60535 60726 29 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 404141 404359 77 - . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX LINE_L1 196453 196599 79 + . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold41794 WUBlastX LTR_Ngaro 122913 123362 132 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_RTE-X 16690 16788 49 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-X 808182 808316 45 + . . scaffold419 GLEAN mRNA 806382 811629 0.999675 - . ID=CGI_10028368; scaffold269 WUBlastX LINE_RTE-X 456067 456309 110 + . . scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold676 WUBlastX LINE_RTE-X 647330 647611 31 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_RTE-X 317499 317966 126 - . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_RTE-X 107646 107834 51 + . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold694 WUBlastX DNA_TcMar-Tc1 259 519 154 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_DIRS 510163 511344 720 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold847 WUBlastX LTR_DIRS 511355 511729 211 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold962 WUBlastX LTR_Pao 28219 28497 43 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Gypsy 418239 418709 114 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_R2-Hero 124571 124819 138 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_R2-Hero 125026 125547 399 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L2 913722 914030 117 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy-Cigr 192967 193578 164 - . . scaffold1445 GLEAN mRNA 192510 193966 0.699862 - . ID=CGI_10010372; scaffold317 WUBlastX LTR_Ngaro 351048 351173 36 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 342259 342489 251 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 342483 342965 400 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold162 WUBlastX LTR_Gypsy 271221 271409 58 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold1062 WUBlastX LINE_RTE-X 55634 55810 126 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_RTE-X 55824 57386 717 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_RTE-X 57362 57883 285 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1 1563008 1563136 29 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 552732 552980 78 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; C26430 WUBlastX LTR_Gypsy 724 1086 204 + . . . . . -1 -1 -1 . . . scaffold35970 WUBlastX LTR_Gypsy 26700 26768 30 + . . . . . -1 -1 -1 . . . scaffold42566 WUBlastX LINE_RTE-RTE 41289 41966 122 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 615343 615735 144 + . . scaffold854 GLEAN mRNA 615007 630217 0.932456 + . ID=CGI_10022262; C21396 WUBlastX LINE_L1-Tx1 499 1392 33 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LTR_Ngaro 221289 222896 1230 + . . . . . -1 -1 -1 . . . scaffold1880 WUBlastX LINE_RTE-X 52502 54811 1112 + . . scaffold1880 GLEAN mRNA 5602 92195 0.383639 - . ID=CGI_10008204; scaffold854 WUBlastX LTR_Gypsy-Cigr 11986 12534 385 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy-Cigr 351874 353313 809 - . . scaffold85 GLEAN mRNA 332841 357883 0.849566 - . ID=CGI_10020703; scaffold1736 WUBlastX LINE_CR1 560736 561749 120 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX DNA_TcMar-Tc1 156020 156259 52 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_RTE-X 97475 97546 20 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_L1-Tx1 733037 733783 97 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 680010 681503 872 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 681503 681808 25 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 681934 682701 97 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LTR_Gypsy 123090 126617 1418 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 61997 64243 977 - . . . . . -1 -1 -1 . . . scaffold40016 WUBlastX LINE_L1-Tx1 77943 78821 136 - . . . . . -1 -1 -1 . . . scaffold40016 WUBlastX LINE_L1-Tx1 78842 80542 1154 - . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX LINE_CR1 101034 101159 93 - . . . . . -1 -1 -1 . . . scaffold33934 WUBlastX LINE_L1-Tx1 5809 7299 101 - . . . . . -1 -1 -1 . . . scaffold33934 WUBlastX LINE_L1-Tx1 7805 9076 748 - . . . . . -1 -1 -1 . . . scaffold33934 WUBlastX LINE_L1-Tx1 9060 9641 419 - . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 72745 73176 162 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_CR1-L2 247746 248012 117 - . . scaffold1866 GLEAN mRNA 240570 251729 0.651094 - . ID=CGI_10017912; scaffold38650 WUBlastX LINE_Jockey 58793 59734 186 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 1133631 1133750 33 - . . scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1024 WUBlastX LTR_Gypsy 64056 64286 243 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Kolobok-IS4 1080136 1080198 23 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Kolobok-IS4 1080593 1080670 22 - . . scaffold1154 GLEAN mRNA 1080378 1140871 0.124336 - . ID=CGI_10026207; C26054 WUBlastX DNA_PiggyBac 1012 1581 195 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-X 470018 470590 87 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_DIRS 68607 68675 29 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_DIRS 68996 69274 57 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_DIRS 69327 69470 62 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_DIRS 69677 70036 80 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_L1-Tx1 253814 256750 1340 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Ac 160235 160378 33 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX DNA_hAT-Tip100 640802 640936 65 + . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_RTE-X 106321 106518 119 + . . . . . -1 -1 -1 . . . C25748 WUBlastX LTR_DIRS 2939 3250 125 + . . . . . -1 -1 -1 . . . C25748 WUBlastX LTR_DIRS 3340 3459 56 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 573933 574280 216 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX RC_Helitron 12415 14799 631 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 53591 56629 1760 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_L1-Tx1 222674 223309 115 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_L1-Tx1 223297 223635 66 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_L1-Tx1 223800 225023 686 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_L1-Tx1 225037 226431 651 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 245199 245333 32 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 243607 244170 38 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_L2 233537 233794 70 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX DNA_En-Spm 306997 307641 199 - . . scaffold165 GLEAN mRNA 293161 307887 0.249814 - . ID=CGI_10015330; scaffold1188 WUBlastX LTR_Gypsy 644870 645400 251 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_R2-Hero 269912 270187 219 + . . scaffold689 GLEAN mRNA 268555 270351 0.998685 - . ID=CGI_10014829; scaffold40948 WUBlastX LINE_Penelope 101065 101745 175 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_RTE-X 124964 125275 243 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy 66785 67870 918 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy 67847 67987 42 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_hAT-hATw 545933 546064 47 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_hAT-hATw 546097 546192 36 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_Penelope 92792 93496 172 + . . scaffold1574 GLEAN mRNA 78319 93305 0.677897 + . ID=CGI_10016320; scaffold44 WUBlastX DNA_IS4EU 349361 349987 226 - . . scaffold44 GLEAN mRNA 346940 353357 0.748127 - . ID=CGI_10016836; scaffold35866 WUBlastX DNA_IS4EU 8547 9173 226 - . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LINE_RTE-X 4767 4928 49 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_RTE-X 236401 236685 45 - . . . . . -1 -1 -1 . . . scaffold41762 WUBlastX RC_Helitron 62570 65965 1837 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 112562 113038 199 + . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LTR_Pao 309203 309916 673 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 312140 312454 173 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold1532 WUBlastX LINE_L2 53903 57187 1781 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LTR_Gypsy 40728 44750 2062 + . . scaffold1241 GLEAN mRNA 33172 55862 0.858231 - . ID=CGI_10016418; C25876 WUBlastX LTR_Ngaro 2408 3127 243 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LTR_Ngaro 91333 92034 195 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Ngaro 317322 318041 243 - . . scaffold1670 GLEAN mRNA 315570 334176 0.999676 + . ID=CGI_10017618; scaffold670 WUBlastX LTR_Gypsy 58237 59076 228 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_I 96195 96332 29 + . . . . . -1 -1 -1 . . . scaffold37252 WUBlastX DNA_Kolobok-IS4 7791 7835 34 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LINE_L1-Tx1 184774 185292 43 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LINE_L1-Tx1 185343 185483 136 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX DNA_TcMar-Tc1 83473 84408 115 - . . scaffold890 GLEAN mRNA 81187 101968 1 - . ID=CGI_10014464; scaffold1767 WUBlastX LINE_RTE-X 434488 435300 159 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Maverick 158673 159209 239 + . . scaffold317 GLEAN mRNA 153090 159310 0.520587 + . ID=CGI_10019347; scaffold70 WUBlastX DNA_TcMar-Tc1 701932 702669 92 - . . scaffold70 GLEAN mRNA 689757 708725 0.811083 - . ID=CGI_10024788; scaffold40948 WUBlastX LTR_Pao 104412 104843 397 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_IS4EU 1244420 1244599 70 + . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_L2 112848 113084 56 - . . scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold198 WUBlastX LTR_Gypsy 798354 802154 2181 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold1018 WUBlastX DNA_PiggyBac 460162 460404 183 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LTR_Ngaro 268615 268911 142 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold364 WUBlastX DNA_Maverick 319090 319740 299 - . . . . . -1 -1 -1 . . . scaffold532 WUBlastX LINE_RTE-X 27122 27274 151 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Ngaro 440699 440848 24 - . . . . . -1 -1 -1 . . . C31884 WUBlastX LTR_Gypsy 43 1023 285 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 588497 589021 116 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy-Troyk 14025 14333 328 + . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX LTR_Gypsy-Troyk 74818 75384 117 + . . scaffold1656 GLEAN mRNA 73832 80261 0.912224 + . ID=CGI_10006143; scaffold1656 WUBlastX LTR_Gypsy-Troyk 75390 75638 87 + . . scaffold1656 GLEAN mRNA 73832 80261 0.912224 + . ID=CGI_10006143; scaffold237 WUBlastX DNA_Harbinger 469700 469978 196 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Harbinger 470174 470320 94 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 811684 812997 180 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 708109 708204 20 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_Kolobok-IS4 232861 233484 249 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX DNA_IS4EU 22174 22491 95 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_RTE-X 32743 33864 171 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_CR1-L2 45140 45430 195 - . . . . . -1 -1 -1 . . . scaffold36202 WUBlastX LTR_Gypsy 28057 28575 47 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_TcMar-Fot1 116523 116996 166 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold38272 WUBlastX LINE_L1 39449 39856 89 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold424 WUBlastX LTR_Gypsy 65069 65290 40 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LTR_Gypsy 63693 64082 160 + . . . . . -1 -1 -1 . . . C33646 WUBlastX LTR_DIRS? 5284 5661 229 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1 327470 327673 25 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_L1-Tx1 43386 44207 40 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 383177 383965 210 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1225831 1227132 344 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 240905 241168 29 - . . . . . -1 -1 -1 . . . scaffold397 WUBlastX LINE_L1-Tx1 44895 46199 214 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LTR_DIRS 161598 162590 332 - . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_Gypsy 24714 25064 166 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 258087 259007 386 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Harbinger 250255 250554 72 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Harbinger 251482 251724 136 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_RTE-X 484127 484762 285 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_L1-Tx1 23145 23516 51 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1-Tx1 23145 23516 51 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold417 WUBlastX LTR_Gypsy 37522 37560 24 + . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX DNA_Kolobok-IS4 80896 81648 351 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Ngaro 122230 123021 316 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_L1-Tx1 500871 500978 31 + . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX LTR_Ngaro 36858 37250 204 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Maverick 4461 4754 156 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Maverick 4860 5090 163 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_PiggyBac 352545 353003 204 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 94649 95212 140 - . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_L1-Tx1 271348 271857 162 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX LTR_Gypsy 386147 386494 76 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_DIRS 69682 70152 109 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_DIRS 70491 70670 51 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_DIRS 70672 70746 51 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_DIRS 70760 71275 214 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_Sola 217787 219592 352 - . . scaffold1397 GLEAN mRNA 206907 222276 0.644927 - . ID=CGI_10017120; scaffold473 WUBlastX DNA_TcMar-Tc1 28006 28800 265 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-BovB 42654 42917 91 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-BovB 43878 44552 211 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-BovB 44660 45040 89 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-BovB 45548 45649 21 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 202080 202436 143 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1847 WUBlastX LINE_RTE-X 67396 67671 48 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Academ 69560 69907 139 - . . . . . -1 -1 -1 . . . scaffold350 WUBlastX DNA_Academ 1019 1123 33 - . . scaffold350 GLEAN mRNA 1105 3206 0.996578 - . ID=CGI_10000780; scaffold350 WUBlastX DNA_Academ 1141 1863 356 - . . scaffold350 GLEAN mRNA 1105 3206 0.996578 - . ID=CGI_10000780; scaffold350 WUBlastX DNA_Academ 1810 2073 89 - . . scaffold350 GLEAN mRNA 1105 3206 0.996578 - . ID=CGI_10000780; scaffold258 WUBlastX LINE_CR1-L2 426716 427345 395 - . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_L1 156946 157734 456 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_RTE-X 526248 526928 238 - . . scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold126 WUBlastX LTR_Gypsy 572316 572375 20 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 944451 944744 137 + . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LINE_RTE-BovB 267213 267287 28 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold1418 WUBlastX DNA_IS4EU 17700 18272 373 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Gypsy 283859 284686 256 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_L1 8049 8492 239 + . . . . . -1 -1 -1 . . . scaffold41588 WUBlastX LINE_L1-Tx1 102678 102788 27 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1-Tx1 170176 170334 85 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 20579 20800 147 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 18972 19799 122 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 19831 20469 70 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LINE_RTE-X 51322 52731 337 - . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_CR1-L2 324870 326024 510 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Gypsy 9703 10974 582 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 1416691 1417230 199 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 1417200 1417478 170 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 1417483 1417953 218 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Pao 401170 401688 516 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 234905 235090 49 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 26670 27059 243 - . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX LTR_Gypsy 91350 92399 195 - . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LINE_L1-Tx1 36863 37069 74 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_CR1 78228 79706 572 + . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LINE_RTE-BovB 56196 56411 96 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_L1-Tx1 194792 195166 243 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold1753 WUBlastX LTR_Gypsy 30007 30543 48 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L1-Tx1 562867 563436 291 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 81397 82305 431 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_DIRS 373432 374244 652 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_L2 320883 321731 623 + . . scaffold767 GLEAN mRNA 315899 380131 0.808127 - . ID=CGI_10014850; scaffold730 WUBlastX LINE_L2 406700 407836 606 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1 14195 14494 73 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_L1 774452 775729 215 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy 565693 565986 27 - . . . . . -1 -1 -1 . . . scaffold35430 WUBlastX LINE_RTE-X 18282 18596 30 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Ngaro 224436 225287 386 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold149 WUBlastX LINE_L1 230992 231138 45 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_Penelope 236110 236535 239 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_Penelope 236546 237424 381 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Ngaro 1181651 1181755 49 + . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX DNA_Harbinger 251418 251501 52 + . . . . . -1 -1 -1 . . . scaffold1727 WUBlastX RC_Helitron 19862 20905 123 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 42078 43136 83 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_L1-Tx1 127208 128875 680 - . . . . . -1 -1 -1 . . . C25876 WUBlastX LTR_Ngaro 531 1721 777 + . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_RTE-X 35873 36193 103 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy 64641 65012 62 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold1035 WUBlastX LINE_CR1 97533 97958 406 + . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_L2 134666 134734 34 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2 370267 370539 53 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LINE_L2 131812 132180 41 + . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_hAT-Tip100 280380 280682 62 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1 44459 44554 22 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L2 330162 330800 27 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Gypsy 476053 476913 38 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold77 WUBlastX LINE_L2 732179 732364 73 + . . . . . -1 -1 -1 . . . C10673 WUBlastX LTR_DIRS 37 162 59 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LTR_Gypsy 49722 49808 20 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LTR_Gypsy 49867 49968 45 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_R2-Hero 248078 248182 20 - . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX DNA_IS4EU 2752 2877 36 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX DNA_Harbinger 705946 706095 71 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_Harbinger 975554 975730 57 + . . scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold784 WUBlastX LINE_I 850320 850745 31 + . . scaffold784 GLEAN mRNA 848886 854519 0.990187 - . ID=CGI_10024446; scaffold226 WUBlastX DNA_TcMar-Marin 1058010 1058081 20 - . . scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold42070 WUBlastX LINE_L1 67834 68277 37 - . . scaffold42070 GLEAN mRNA 63527 73059 0.466285 + . ID=CGI_10006078; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3161 3319 21 + . . scaffold38466 GLEAN mRNA 3170 4605 0.999675 + . ID=CGI_10002797; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3590 3655 26 + . . scaffold38466 GLEAN mRNA 3170 4605 0.999675 + . ID=CGI_10002797; scaffold867 WUBlastX LINE_RTE-X 209719 209814 31 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LINE_RTE-X 16751 16930 21 + . . . . . -1 -1 -1 . . . scaffold41356 WUBlastX LINE_RTE-X 57789 57959 55 - . . scaffold41356 GLEAN mRNA 49810 66673 0.811456 + . ID=CGI_10004995; scaffold312 WUBlastX DNA_PiggyBac 48602 48745 75 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 341592 342041 72 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Lenti 513270 513422 29 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1-Tx1 24918 25058 61 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_L1-Tx1 582555 582623 33 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_TcMar-Tc1 526633 526779 38 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LINE_CR1-L2 29835 30044 67 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LINE_CR1-L2 284115 284393 77 - . . . . . -1 -1 -1 . . . scaffold29598 WUBlastX LINE_L2 3323 4000 49 - . . scaffold29598 GLEAN mRNA 1487 5790 0.999943 - . ID=CGI_10000548; scaffold801 WUBlastX LTR_DIRS 155770 156012 45 + . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_L2 177574 177912 42 - . . scaffold504 GLEAN mRNA 176392 179041 1 - . ID=CGI_10016023; scaffold43608 WUBlastX DNA_TcMar-Marin 14610 14705 30 + . . scaffold43608 GLEAN mRNA 13222 18761 0.825558 - . ID=CGI_10011388; scaffold847 WUBlastX LTR_Gypsy 65259 65522 69 - . . scaffold847 GLEAN mRNA 61092 71360 0.999451 - . ID=CGI_10022265; scaffold1703 WUBlastX LTR_Gypsy 170685 170840 75 - . . . . . -1 -1 -1 . . . scaffold675 WUBlastX DNA_TcMar-Marin 115319 115567 62 - . . scaffold675 GLEAN mRNA 109657 116904 0.999611 - . ID=CGI_10017856; scaffold1767 WUBlastX LINE_R2-Hero 390887 390964 31 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_L2 181915 181947 25 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 275859 276020 62 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_RTE-X 26034 26198 43 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_RTE-X 337611 337775 43 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; C29108 WUBlastX LINE_RTE-X 1818 2075 74 + . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LINE_RTE-X 147627 147953 20 - . . . . . -1 -1 -1 . . . scaffold38750 WUBlastX LINE_RTE-X 4459 4758 62 + . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold954 WUBlastX LINE_RTE-X 95460 95747 67 - . . . . . -1 -1 -1 . . . scaffold40828 WUBlastX LTR_Gypsy 57463 57657 64 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold967 WUBlastX LINE_CR1-L2 325306 325620 82 + . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_CR1 10487 10561 22 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold332 WUBlastX LINE_CR1 633376 633780 67 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_TcMar-ISRm1 515194 515430 68 - . . scaffold301 GLEAN mRNA 515134 528114 0.999355 - . ID=CGI_10026723; scaffold881 WUBlastX DNA_TcMar-ISRm1 1293 1556 100 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_CR1-L2 1276099 1276338 46 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1604992 1605198 88 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold1188 WUBlastX DNA_hAT-Ac 238660 238845 44 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_IS4EU 40437 40580 24 - . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_IS4EU 40752 40868 28 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_IS4EU 140333 140800 64 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_Harbinger 125046 125366 94 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_CR1 15120 15212 20 + . . . . . -1 -1 -1 . . . scaffold1803 WUBlastX LINE_RTE-X 231262 231510 81 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 18581 18781 21 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_RTE-X 197427 197600 60 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX DNA_Sola 37372 37443 24 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX DNA_hAT-Ac 187091 187552 86 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_Crypton 715258 715635 69 - . . scaffold364 GLEAN mRNA 715375 716114 0.276063 - . ID=CGI_10022710; scaffold364 WUBlastX DNA_Crypton 716190 716417 21 - . . scaffold364 GLEAN mRNA 716389 716769 1 - . ID=CGI_10022711; scaffold364 WUBlastX DNA_Crypton 716410 716484 28 - . . scaffold364 GLEAN mRNA 716389 716769 1 - . ID=CGI_10022711; scaffold1024 WUBlastX LTR_Ngaro 1087564 1087932 63 - . . . . . -1 -1 -1 . . . scaffold32094 WUBlastX LTR_Ngaro 9737 9934 40 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 90260 90382 35 + . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX DNA_IS4EU 15539 15694 21 + . . . . . -1 -1 -1 . . . scaffold415 WUBlastX DNA_IS4EU 3603 4175 54 - . . . . . -1 -1 -1 . . . scaffold40584 WUBlastX DNA_IS4EU 35473 36069 73 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX DNA_hAT-hATw 156566 156760 21 - . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX RC_Helitron 59747 60184 107 + . . scaffold1603 GLEAN mRNA 44108 68236 0.999997 - . ID=CGI_10012816; scaffold631 WUBlastX LINE_Penelope 183499 183660 24 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_Penelope 138022 138267 68 - . . . . . -1 -1 -1 . . . scaffold42556 WUBlastX LINE_L1 31183 31338 29 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 612920 613168 90 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold880 WUBlastX DNA_PiggyBac 419663 420016 83 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L1 170885 170986 32 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_RTE-X 457087 457296 58 + . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX DNA_hAT 387943 388623 75 - . . scaffold1031 GLEAN mRNA 387475 388722 0.970693 - . ID=CGI_10019708; scaffold11 WUBlastX LINE_L2 52639 52761 26 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_L2 104040 104390 85 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_CR1 3741 3854 65 + . . . . . -1 -1 -1 . . . scaffold1485 WUBlastX LINE_CR1 49047 49496 41 - . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_CR1 171683 172000 51 - . . . . . -1 -1 -1 . . . scaffold250 WUBlastX LTR_Ngaro 29503 29892 53 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Harbinger 1540594 1540953 82 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Ngaro 847389 847655 74 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LINE_RTE-X 174373 174729 25 - . . . . . -1 -1 -1 . . . scaffold35432 WUBlastX LINE_L1-Tx1 67 183 60 - . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX DNA_Zator 178282 178416 23 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX DNA_Zator 178579 178842 80 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_CR1 607715 608635 109 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_CR1-L2 147956 148318 109 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_L2-Hydra 314926 315459 42 - . . . . . -1 -1 -1 . . . C33658 WUBlastX LINE_CR1 5265 5594 123 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L2 249401 250189 91 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 148986 149741 81 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_IS4EU 189174 189347 74 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_IS4EU 851863 852171 92 + . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LINE_L1 21065 21214 49 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_L1 113168 113695 44 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_RTE-X 174288 174503 28 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LINE_RTE-X 92037 92342 80 - . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX DNA_Sola 15737 16066 58 + . . . . . -1 -1 -1 . . . scaffold399 WUBlastX LINE_L1-Tx1 201213 201434 93 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L2 159495 160061 90 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX DNA_PiggyBac 353604 353978 102 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX DNA_TcMar-Pogo 592598 592846 113 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold38458 WUBlastX DNA_Academ 14728 14994 55 + . . . . . -1 -1 -1 . . . C34562 WUBlastX LTR_Ngaro 9773 10069 78 + . . . . . -1 -1 -1 . . . C30806 WUBlastX DNA_TcMar-Tc1 5446 5832 116 + . . . . . -1 -1 -1 . . . scaffold13 WUBlastX LINE_Penelope 307178 307444 79 - . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LINE_RTE-X 21411 21605 48 - . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LINE_RTE-X 21584 21736 67 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LINE_RTE-X 638252 638470 98 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; scaffold576 WUBlastX LINE_RTE-X 456517 456615 34 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-BovB 286035 286490 20 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX DNA_TcMar-Pogo 350804 351001 124 + . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX LINE_RTE-X 112714 113055 60 - . . scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold433 WUBlastX DNA_TcMar-Marin 270525 270788 78 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 375694 375906 40 + . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX LINE_L2 48906 49622 83 - . . scaffold41546 GLEAN mRNA 38795 60206 0.986293 + . ID=CGI_10005268; scaffold1599 WUBlastX LINE_L2 1322649 1323302 97 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LTR_DIRS 160753 161364 49 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Harbinger 850752 850844 52 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX DNA_Harbinger 851191 851376 89 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold721 WUBlastX DNA_Harbinger 38232 38375 74 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Harbinger 38826 38978 57 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc1 268822 269115 109 + . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L1 89585 89827 35 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX DNA_Maverick 62801 63034 38 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1075420 1075530 32 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold1736 WUBlastX DNA_hAT-Tip100 633002 633112 30 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_L2 13091 13327 118 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 467644 467754 28 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LTR_Gypsy 19580 19669 21 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_hAT-Tip100 102094 102939 103 + . . . . . -1 -1 -1 . . . scaffold617 WUBlastX DNA_TcMar-Fot1 47263 47838 134 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_L1-Tx1 870451 871062 46 - . . scaffold1219 GLEAN mRNA 868848 874682 0.999351 + . ID=CGI_10024304; scaffold670 WUBlastX LTR_Gypsy 77146 77904 114 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX DNA_hAT-hATw 151322 151717 31 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX DNA_hAT-hATw 151904 152032 38 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX DNA_TcMar-Fot1 58820 59128 139 + . . . . . -1 -1 -1 . . . scaffold37722 WUBlastX DNA_Sola 33851 34789 60 - . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 330399 330614 162 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 330628 331044 207 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold298 WUBlastX LTR_Gypsy 40453 40587 82 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 21895 23076 175 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 23034 23513 411 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 598523 599806 417 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_En-Spm 39203 40303 466 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_En-Spm 40273 41478 364 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_L1-Tx1 44787 46043 65 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Pao 342075 342878 125 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy-Cigr 10393 10809 53 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX LTR_Gypsy-Cigr 10823 11098 92 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold43844 WUBlastX LTR_Gypsy 318339 318386 21 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LTR_Gypsy 86757 88523 1006 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Ngaro 44295 45848 995 - . . . . . -1 -1 -1 . . . C28218 WUBlastX LTR_Pao 2354 3055 64 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Academ 246010 246441 23 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Academ 246432 246800 102 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Academ 246989 247138 24 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Academ 247113 247277 26 + . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_CR1 45092 45457 145 - . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 10525 10836 102 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Gypsy-Cigr 42972 43538 160 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold1104 WUBlastX LINE_R2-Hero 201667 202608 106 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_TcMar-Pogo 259200 259466 123 - . . . . . -1 -1 -1 . . . scaffold19568 WUBlastX LINE_RTE-X 3 482 94 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Ngaro 246516 246743 139 + . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX DNA_TcMar-Tigge 2307 2579 75 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_ERV1 119923 120672 154 - . . . . . -1 -1 -1 . . . scaffold38848 WUBlastX DNA_TcMar-Tc1 54614 54808 43 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 201224 201352 46 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 202293 203237 671 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LTR_Ngaro 34445 35245 499 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LTR_Gypsy-Cigr 335 1231 576 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LTR_Gypsy-Cigr 1228 1689 432 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_PiggyBac 1917008 1917250 84 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_PiggyBac 1917201 1918496 1039 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L2 230661 231284 115 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold1710 WUBlastX LTR_Gypsy 43995 44159 68 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_TcMar-Fot1 168851 169366 110 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-X 244649 244846 88 + . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LINE_RTE-X 139728 140042 76 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 277203 277751 90 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_CR1-L2 177807 178049 51 - . . . . . -1 -1 -1 . . . scaffold38736 WUBlastX LTR_Gypsy-Cigr 531 1016 161 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LTR_DIRS 102220 102507 68 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold41816 WUBlastX LINE_CR1 87116 87289 26 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold663 WUBlastX LINE_L2 87168 87794 41 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LTR_Ngaro 159790 160026 152 + . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LTR_DIRS 116753 117151 70 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy-Cigr 147732 148511 158 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy 199288 199350 21 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Ngaro 227615 227830 89 - . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX DNA_Maverick 787 1356 144 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_TcMar-Tc2 22584 23594 202 - . . scaffold38492 GLEAN mRNA 22581 25357 0.777277 - . ID=CGI_10002800; scaffold22 WUBlastX LINE_L1-Tx1 1344115 1344597 40 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 324960 325574 351 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 326690 327157 174 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Maverick 137689 137850 127 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_Academ 189770 189880 23 - . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold1237 WUBlastX LTR_DIRS 60818 61267 154 + . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 73216 73563 108 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold170 WUBlastX LINE_RTE-X 107912 108193 61 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 100067 100189 59 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LTR_Gypsy 210039 210167 59 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LTR_Gypsy 210467 210718 178 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LTR_Gypsy 212074 212493 258 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 71710 71820 22 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 829336 829722 74 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 76633 77085 363 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 77069 77617 96 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 93831 93872 26 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_L2 412300 412665 191 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_L2 199104 199547 133 - . . scaffold336 GLEAN mRNA 195464 211672 0.66246 + . ID=CGI_10012568; scaffold597 WUBlastX LTR_ERVL 98882 98995 25 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 748269 748430 23 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Ngaro 389175 389390 110 - . . . . . -1 -1 -1 . . . scaffold41082 WUBlastX LINE_RTE-X 55968 56363 133 - . . . . . -1 -1 -1 . . . scaffold41082 WUBlastX LINE_RTE-X 56718 57044 88 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_L1-Tx1 24134 24529 143 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1-Tx1 24134 24529 143 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold266 WUBlastX LTR_Gypsy 278188 280542 1018 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_CR1 44605 44670 23 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L2 194885 195616 123 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_IS4EU 318 695 41 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_IS4EU 1712 1822 29 + . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LINE_L1 106073 106138 22 - . . scaffold1819 GLEAN mRNA 106096 109792 0.535448 - . ID=CGI_10007292; scaffold631 WUBlastX DNA_TcMar-Tc1 72543 72869 170 - . . . . . -1 -1 -1 . . . scaffold907 WUBlastX LINE_CR1-L2 14152 14358 92 + . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LTR_DIRS 333933 334877 184 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX DNA_TcMar-Tc1 927121 927246 39 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_RTE-X 149017 149574 37 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold20 WUBlastX LINE_RTE-X 373411 374043 52 - . . . . . -1 -1 -1 . . . scaffold37664 WUBlastX LINE_L2 30096 30839 182 + . . scaffold37664 GLEAN mRNA 26553 34965 0.581431 + . ID=CGI_10002440; scaffold37664 WUBlastX LINE_L2 31736 31831 26 + . . scaffold37664 GLEAN mRNA 26553 34965 0.581431 + . ID=CGI_10002440; scaffold835 WUBlastX DNA_MuDR 409638 410345 101 - . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX DNA_TcMar-Tc1 1660 2337 138 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc1 223342 224070 133 - . . scaffold1024 GLEAN mRNA 191784 246938 0.99909 + . ID=CGI_10028528; scaffold146 WUBlastX DNA_PiggyBac 967161 967466 146 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Ngaro 640269 640919 202 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold1264 WUBlastX LINE_L1 136179 137522 839 + . . scaffold1264 GLEAN mRNA 129263 151960 0.5 - . ID=CGI_10007176; scaffold681 WUBlastX LTR_Ngaro 386139 386651 138 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 53619 53768 25 + . . . . . -1 -1 -1 . . . scaffold1646 WUBlastX LTR_Gypsy 156625 156771 30 - . . . . . -1 -1 -1 . . . scaffold41740 WUBlastX LINE_L1-Tx1 114373 114759 82 - . . . . . -1 -1 -1 . . . scaffold36398 WUBlastX LTR_Gypsy 24091 25740 684 - . . . . . -1 -1 -1 . . . scaffold36398 WUBlastX LTR_Gypsy 26474 27028 455 - . . . . . -1 -1 -1 . . . C31202 WUBlastX LINE_L2 427 924 167 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 637807 638235 61 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold517 WUBlastX DNA_Kolobok 191056 191277 51 + . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX DNA_Kolobok 191411 191653 85 + . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX DNA_Kolobok 192221 192526 80 + . . scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold37662 WUBlastX DNA_Sola 22317 22646 88 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX LTR_Gypsy 383120 386440 1235 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 7159 9327 1421 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 9323 10075 550 + . . . . . -1 -1 -1 . . . scaffold749 WUBlastX DNA_Crypton 1046 1702 233 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_IS4EU 658717 659691 141 + . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold1836 WUBlastX LINE_RTE-X 1135848 1136552 158 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX RC_Helitron 133655 139606 1808 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-X 754070 754447 240 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-X 754438 754881 220 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-X 754956 756629 923 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-X 756628 757389 421 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Pao 743165 743548 234 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_Harbinger 27042 27329 132 + . . scaffold40680 GLEAN mRNA 27135 28116 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27042 27329 132 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold1267 WUBlastX DNA_MuDR 271831 272703 258 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_L2 388050 388127 20 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 442486 442668 100 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold40134 WUBlastX LINE_RTE-X 69439 69762 149 + . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold43686 WUBlastX LTR_Gypsy 149578 149781 30 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Kolobok 202844 203023 94 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Kolobok 203204 203389 55 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Kolobok 203473 203643 64 + . . . . . -1 -1 -1 . . . C30238 WUBlastX LTR_Pao 597 3080 1944 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 499588 499899 76 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 499934 500203 128 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 500316 500447 28 + . . . . . -1 -1 -1 . . . C25344 WUBlastX LTR_Copia 12 572 91 - . . . . . -1 -1 -1 . . . C25344 WUBlastX LTR_Copia 559 912 156 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 148551 149174 120 - . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_RTE-X 1950 2219 93 - . . . . . -1 -1 -1 . . . C31300 WUBlastX LTR_Gypsy 4925 5059 22 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Gypsy 155104 157215 1727 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Gypsy 157212 158384 627 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 324618 324797 44 - . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX DNA_IS4EU 158662 159576 288 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 230354 230929 114 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LTR_Gypsy 59145 61700 1618 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LTR_Gypsy 61715 62893 1007 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LTR_Gypsy 63065 63175 37 + . . . . . -1 -1 -1 . . . scaffold41772 WUBlastX LTR_Gypsy 99121 99351 97 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Maverick 178446 178583 32 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1-Tx1 196936 197010 21 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LTR_Pao 74860 75417 81 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-X 1049777 1050577 249 - . . . . . -1 -1 -1 . . . scaffold1087 WUBlastX LTR_Gypsy 13765 14775 352 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; C35794 WUBlastX LINE_L2 14121 14249 52 - . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LTR_Gypsy 73137 73754 197 + . . . . . -1 -1 -1 . . . scaffold1250 WUBlastX DNA_Sola 28696 29388 198 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 48354 48548 66 + . . . . . -1 -1 -1 . . . C28286 WUBlastX DNA_TcMar-Tc1 2745 3293 82 - . . . . . -1 -1 -1 . . . C26040 WUBlastX LINE_RTE-X 2629 3354 164 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-X 21728 22243 133 + . . . . . -1 -1 -1 . . . scaffold858 WUBlastX LINE_L2 15203 16306 268 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold858 WUBlastX LINE_L2 16512 16625 35 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; C31370 WUBlastX LINE_L2 5880 6134 106 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L1-Tx1 47210 47650 360 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold292 WUBlastX LINE_L1 7166 7435 145 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold807 WUBlastX LINE_L1-Tx1 159480 160082 366 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_RTE-X 248636 248827 128 + . . scaffold43836 GLEAN mRNA 242579 251086 0.650911 - . ID=CGI_10013062; scaffold40786 WUBlastX LINE_RTE-X 9802 9858 20 + . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LINE_RTE-X 9912 10208 71 + . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LINE_RTE-X 10239 10370 64 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 239114 239587 113 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 795525 795731 47 + . . . . . -1 -1 -1 . . . C33658 WUBlastX LINE_L1-Tx1 5596 6072 230 + . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_Kolobok-IS4 145973 146326 107 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1 163604 163735 24 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LTR_DIRS 55220 55336 39 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_Gypsy 239985 240275 105 - . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; C30752 WUBlastX LINE_RTE-X 1973 2188 63 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 90369 90575 68 - . . . . . -1 -1 -1 . . . scaffold41014 WUBlastX LINE_L1-Tx1 30829 31620 216 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 182087 182173 41 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_L1-Tx1 529563 529757 43 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Ngaro 352953 353891 397 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Ngaro 6330 7319 397 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LTR_Ngaro 167091 168374 353 - . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold448 WUBlastX LINE_L1-Tx1 1003447 1004073 122 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_L1-Tx1 505439 506875 227 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1 56440 57720 277 + . . . . . -1 -1 -1 . . . scaffold34872 WUBlastX DNA_Sola 1980 2822 243 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_RTE-BovB 236782 238212 380 + . . . . . -1 -1 -1 . . . C22322 WUBlastX LINE_L1-Tx1 343 813 126 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_CR1-L2 736088 736555 186 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold833 WUBlastX LINE_L1 467315 467770 118 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold43500 WUBlastX LINE_L1-Tx1 141196 141804 63 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 733529 734164 153 + . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L1-Tx1 301864 301956 33 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 794328 794591 147 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Tip100 762215 762919 311 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 648619 648990 151 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_RTE-X 19174 19236 23 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Kolobok 304320 304391 23 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Kolobok 304648 304818 89 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Kolobok 305256 305432 80 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Kolobok 305502 305702 131 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Kolobok 305816 306628 172 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_L1-Tx1 85100 85351 176 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold286 WUBlastX LTR_DIRS 194474 194674 66 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_DIRS 195028 195144 28 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_DIRS 195236 195508 112 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_DIRS 195663 195950 54 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_DIRS 195977 197413 209 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Pao 22792 23706 513 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Pao 24257 24427 42 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 368379 368477 25 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368379 368477 25 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold241 WUBlastX LTR_DIRS 62770 63066 172 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 63030 63407 181 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 63402 63584 136 - . . scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold950 WUBlastX LTR_Gypsy 452485 452727 110 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L2 117590 118615 501 + . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX DNA_Maverick 98238 99761 140 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold626 WUBlastX LTR_Gypsy 292956 293267 55 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 382258 383424 189 + . . . . . -1 -1 -1 . . . scaffold37290 WUBlastX LTR_Ngaro 3907 4152 138 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_Penelope 240510 241811 624 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_L1 26382 26603 87 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 26382 26603 87 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold1773 WUBlastX DNA_Sola 254322 254480 56 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 542340 542576 42 - . . . . . -1 -1 -1 . . . scaffold37430 WUBlastX LTR_Pao 40048 40560 218 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold86 WUBlastX LINE_Penelope 469412 469864 217 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_RTE-X 442773 443768 646 - . . . . . -1 -1 -1 . . . C30324 WUBlastX LINE_L1-Tx1 3380 4213 399 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_DIRS 136476 136856 119 + . . . . . -1 -1 -1 . . . scaffold180 WUBlastX LTR_Gypsy 68670 69764 540 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 266684 266941 160 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 266958 267317 131 - . . . . . -1 -1 -1 . . . scaffold817 WUBlastX LTR_Gypsy-Cigr 55167 56351 798 - . . scaffold817 GLEAN mRNA 54160 69177 0.983542 - . ID=CGI_10008657; scaffold1891 WUBlastX LTR_Gypsy 169440 170153 32 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 211643 212140 211 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_RTE-X 27779 29116 724 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_RTE-X 84079 84525 77 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; C30238 WUBlastX LTR_Pao 582 623 21 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 626222 626689 457 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L2 613280 614131 547 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 143631 144152 66 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 144277 144843 237 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 144839 145048 213 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 144984 145922 158 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 296847 297437 159 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_CR1-L2 330186 330593 54 - . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LINE_CR1-L2 112085 112327 41 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_Penelope 186537 186800 44 + . . . . . -1 -1 -1 . . . C35502 WUBlastX LINE_Penelope 10 174 24 + . . . . . -1 -1 -1 . . . C35502 WUBlastX LINE_Penelope 589 774 42 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 445880 446665 54 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LTR_Gypsy 228978 229586 65 + . . . . . -1 -1 -1 . . . scaffold129 WUBlastX LTR_DIRS 17150 17374 71 - . . . . . -1 -1 -1 . . . scaffold41988 WUBlastX DNA_PiggyBac 95354 95485 28 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_CR1 93779 94207 74 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 40558 40869 36 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Gypsy 132295 132537 66 - . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LTR_Gypsy 113310 113732 81 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Ngaro 2521 2694 61 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LTR_Gypsy 84824 84979 41 - . . scaffold698 GLEAN mRNA 81586 93981 0.592995 - . ID=CGI_10020727; scaffold1018 WUBlastX LTR_Gypsy 467699 467899 59 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 159014 159937 30 - . . . . . -1 -1 -1 . . . scaffold26 WUBlastX LTR_Gypsy 38484 38774 67 - . . scaffold26 GLEAN mRNA 37184 39443 0.783788 + . ID=CGI_10002298; scaffold1518 WUBlastX DNA_hAT-Tip100 159448 159714 63 + . . scaffold1518 GLEAN mRNA 153424 166490 0.996783 + . ID=CGI_10017796; scaffold39258 WUBlastX DNA_hAT-Tip100 22763 23032 47 - . . scaffold39258 GLEAN mRNA 21383 23695 0.999661 - . ID=CGI_10003263; scaffold453 WUBlastX DNA_hAT-Ac 371800 371958 26 + . . . . . -1 -1 -1 . . . C35532 WUBlastX RC_Helitron 1834 2409 80 - . . . . . -1 -1 -1 . . . scaffold1639 WUBlastX DNA_Kolobok-IS4 82659 83189 42 - . . scaffold1639 GLEAN mRNA 82644 83780 1 - . ID=CGI_10005439; scaffold1232 WUBlastX DNA_Kolobok-IS4 252419 252667 45 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX DNA_IS4EU 25889 26134 53 + . . . . . -1 -1 -1 . . . scaffold477 WUBlastX LTR_Gypsy 162107 162682 57 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_TcMar-Marin 713353 713556 55 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX DNA_TcMar-Marin 195056 195259 55 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_RTE-X 141838 141981 62 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_RTE-X 76206 76433 52 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_RTE-X 178417 178776 63 + . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_RTE-X 69341 69814 29 - . . . . . -1 -1 -1 . . . scaffold42990 WUBlastX LINE_RTE-X 188762 188941 56 - . . scaffold42990 GLEAN mRNA 185047 195604 0.999676 + . ID=CGI_10008386; scaffold604 WUBlastX LINE_RTE-X 45198 45338 54 - . . scaffold604 GLEAN mRNA 42759 53290 0.454666 + . ID=CGI_10005591; scaffold36808 WUBlastX LINE_RTE-X 35334 35486 33 + . . scaffold36808 GLEAN mRNA 30018 36587 1 - . ID=CGI_10002147; scaffold1682 WUBlastX LINE_RTE-X 207059 207241 22 + . . scaffold1682 GLEAN mRNA 191866 233299 0.316426 - . ID=CGI_10016049; scaffold168 WUBlastX LINE_RTE-X 372791 373021 20 + . . . . . -1 -1 -1 . . . scaffold1585 WUBlastX LINE_RTE-X 177105 177200 28 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_PiggyBac 381279 381626 58 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 81951 82076 23 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_Rex-Babar 379025 379126 25 + . . . . . -1 -1 -1 . . . scaffold1469 WUBlastX LINE_RTE-BovB 70723 70863 68 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_RTE-BovB 1006221 1006403 89 - . . . . . -1 -1 -1 . . . scaffold76 WUBlastX LINE_RTE-X 225684 225980 25 + . . scaffold76 GLEAN mRNA 221391 229684 0.999675 - . ID=CGI_10009406; scaffold471 WUBlastX LINE_RTE-X 1101103 1101315 74 + . . . . . -1 -1 -1 . . . scaffold1848 WUBlastX LINE_RTE-X 116796 117077 53 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_TcMar-Marin 922225 922380 38 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX DNA_TcMar-Marin 87791 87997 58 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LTR_Ngaro 425384 425620 48 - . . scaffold1682 GLEAN mRNA 421857 429054 0.325277 - . ID=CGI_10016058; scaffold38848 WUBlastX DNA_TcMar-Tc1 54464 54772 52 - . . . . . -1 -1 -1 . . . scaffold1369 WUBlastX LINE_L1-Tx1 2513 2746 54 - . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LINE_CR1 125185 125298 29 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_Jockey 160190 160450 33 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold165 WUBlastX DNA_En-Spm 306877 307470 36 - . . scaffold165 GLEAN mRNA 293161 307887 0.249814 - . ID=CGI_10015330; scaffold44006 WUBlastX DNA_En-Spm 117539 117586 20 + . . scaffold44006 GLEAN mRNA 95072 120906 0.949709 + . ID=CGI_10015574; C2821 WUBlastX LTR_Gypsy 3 110 88 + . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 148211 148741 79 + . . . . . -1 -1 -1 . . . C6563 WUBlastX RC_Helitron 3 128 95 + . . . . . -1 -1 -1 . . . C32270 WUBlastX RC_Helitron 10827 11201 63 - . . . . . -1 -1 -1 . . . scaffold38736 WUBlastX LINE_L1 58345 58953 43 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX DNA_Harbinger 16030 16191 70 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold921 WUBlastX DNA_TcMar-Marin 522 710 67 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX DNA_TcMar-Tc1 350700 351071 23 - . . scaffold950 GLEAN mRNA 320484 362683 0.981503 - . ID=CGI_10022928; scaffold1643 WUBlastX DNA_MuDR 36547 36942 54 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1 1135144 1135662 66 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-BovB 111629 111781 51 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_Maverick 326358 326495 29 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold1347 WUBlastX DNA_Maverick 326475 326669 32 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold1104 WUBlastX LINE_RTE-X 333709 334089 27 - . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX LINE_RTE-X 149647 150003 32 - . . scaffold1447 GLEAN mRNA 145066 154561 0.838589 - . ID=CGI_10013818; scaffold39220 WUBlastX LINE_RTE-X 49989 50060 20 - . . . . . -1 -1 -1 . . . scaffold39220 WUBlastX LINE_RTE-X 50107 50229 59 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_TcMar-Marin 144355 144633 58 - . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_L1-Tx1 156417 156650 74 + . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LINE_CR1-L2 154658 154864 21 - . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LINE_CR1-L2 154914 155084 64 - . . . . . -1 -1 -1 . . . scaffold43064 WUBlastX LTR_Gypsy 53078 53473 86 + . . scaffold43064 GLEAN mRNA 50628 70232 0.808133 - . ID=CGI_10008627; scaffold35994 WUBlastX RC_Helitron 17073 17645 75 - . . . . . -1 -1 -1 . . . scaffold814 WUBlastX LINE_I 124155 124643 72 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 614278 615261 46 + . . scaffold854 GLEAN mRNA 615007 630217 0.932456 + . ID=CGI_10022262; scaffold34 WUBlastX LINE_L1 126252 126860 68 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_MuDR 307962 308426 66 + . . scaffold43920 GLEAN mRNA 301272 308189 0.985601 + . ID=CGI_10013998; scaffold1599 WUBlastX LINE_Penelope 631116 631265 56 + . . scaffold1599 GLEAN mRNA 613504 641190 0.579802 + . ID=CGI_10027154; scaffold983 WUBlastX LINE_L1 170227 170733 94 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1240678 1240803 24 + . . . . . -1 -1 -1 . . . scaffold327 WUBlastX LINE_RTE-X 37078 37239 34 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 458906 458974 26 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LTR_Gypsy 875239 875937 46 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_L1 568652 568912 26 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_DIRS 1018461 1018628 83 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold41700 WUBlastX LTR_DIRS 5129 5359 107 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX DNA_IS4EU 214456 214974 58 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold396 WUBlastX LTR_Gypsy 185008 185700 79 - . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LTR_Ngaro 56307 56417 26 - . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LTR_Ngaro 56416 56529 28 - . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LTR_Ngaro 56577 56774 24 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_TcMar-Fot1 270661 271050 91 + . . scaffold43660 GLEAN mRNA 262639 273396 0.998201 - . ID=CGI_10011673; scaffold1213 WUBlastX LINE_Penelope 15003 15491 49 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_Penelope 128223 128390 29 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold675 WUBlastX LINE_I-Nimb 67920 68024 36 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1 736823 736942 25 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_L1 190356 190544 58 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_L1 277763 277897 48 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_L1 385063 385233 25 - . . scaffold335 GLEAN mRNA 381520 394130 0.458743 - . ID=CGI_10017105; scaffold1855 WUBlastX LINE_L1 73369 73434 20 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LINE_RTE-X 205631 205819 91 - . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold557 WUBlastX LINE_RTE-X 172087 172209 22 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_L1-Tx1 89706 89984 38 + . . scaffold54 GLEAN mRNA 86464 97737 1 + . ID=CGI_10023655; scaffold40010 WUBlastX LINE_L1-Tx1 44944 45321 27 - . . . . . -1 -1 -1 . . . scaffold41730 WUBlastX DNA_Zator 115227 115748 72 - . . scaffold41730 GLEAN mRNA 111235 126037 0.999676 + . ID=CGI_10005531; scaffold43692 WUBlastX LINE_CR1 134605 134871 63 + . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX LINE_CR1-L2 20767 20889 72 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LTR_Ngaro 105779 105931 76 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LTR_Ngaro 56085 56270 108 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LTR_Gypsy-Cigr 134558 135091 120 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LTR_Gypsy 150157 150447 102 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX DNA_hAT-Ac 187845 188069 85 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-X 39464 39835 43 - . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX DNA_Maverick 47809 48099 95 - . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_RTE-BovB 248677 249204 36 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L2 216259 216363 26 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Ngaro 488901 489287 52 + . . . . . -1 -1 -1 . . . scaffold42760 WUBlastX DNA_Academ 170762 170926 24 - . . . . . -1 -1 -1 . . . scaffold42760 WUBlastX DNA_Academ 170946 171032 23 - . . . . . -1 -1 -1 . . . C35134 WUBlastX DNA_TcMar-Tc2 18840 19133 56 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-X 221374 221484 20 - . . scaffold954 GLEAN mRNA 220872 230195 0.904789 - . ID=CGI_10010745; scaffold329 WUBlastX LTR_Ngaro 127939 128049 70 - . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LTR_DIRS 354817 355011 127 - . . scaffold510 GLEAN mRNA 352980 361330 0.999948 - . ID=CGI_10013775; scaffold43842 WUBlastX DNA_IS4EU 248475 248834 50 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 248475 248834 50 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold43782 WUBlastX DNA_TcMar-Fot1 9622 10047 91 - . . . . . -1 -1 -1 . . . scaffold694 WUBlastX DNA_TcMar-Tc1 259 567 107 - . . . . . -1 -1 -1 . . . scaffold315 WUBlastX DNA_Kolobok 39367 39582 92 + . . scaffold315 GLEAN mRNA 38585 42231 0.984467 + . ID=CGI_10020399; scaffold41344 WUBlastX LINE_RTE-X 73483 73758 93 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_RTE-BovB 233852 233950 36 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_RTE-X 172764 172895 27 + . . . . . -1 -1 -1 . . . C32614 WUBlastX DNA_TcMar-Tc1 8893 9027 36 - . . . . . -1 -1 -1 . . . scaffold1635 WUBlastX LINE_CR1-L2 9452 10018 57 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_L2 241793 242080 95 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_DIRS 211478 212059 57 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 25552 25638 20 + . . scaffold156 GLEAN mRNA 14763 25823 0.782343 + . ID=CGI_10026471; scaffold402 WUBlastX LINE_L1 517328 517423 24 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1 517629 517817 66 + . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold1589 WUBlastX LINE_L1 380576 380629 27 + . . scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; scaffold1698 WUBlastX LINE_Penelope 558674 559171 59 - . . scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold36482 WUBlastX LINE_Penelope 32335 32610 130 + . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LINE_RTE-BovB 87507 87797 87 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_RTE-X 937614 937961 81 - . . scaffold469 GLEAN mRNA 925100 941633 0.564574 + . ID=CGI_10024703; scaffold290 WUBlastX LINE_RTE-X 184739 185245 88 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold612 WUBlastX LINE_L2 89751 89807 20 - . . . . . -1 -1 -1 . . . scaffold42528 WUBlastX LINE_CR1-L2 132544 133080 67 - . . scaffold42528 GLEAN mRNA 99418 143145 0.451859 - . ID=CGI_10007209; scaffold412 WUBlastX LTR_Gypsy 477191 477412 54 - . . scaffold412 GLEAN mRNA 475444 479022 0.999922 - . ID=CGI_10018583; scaffold1535 WUBlastX LINE_R2-Hero 113100 113186 23 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_Penelope 39735 39986 24 + . . . . . -1 -1 -1 . . . scaffold459 WUBlastX DNA_TcMar-Marin 462709 463251 96 + . . scaffold459 GLEAN mRNA 450027 467601 0.693067 - . ID=CGI_10018185; scaffold210 WUBlastX LINE_RTE-X 441645 441980 96 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX DNA_Maverick 196933 197037 46 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Ngaro 641225 641350 22 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_L1-Tx1 209341 209682 59 - . . . . . -1 -1 -1 . . . C35260 WUBlastX LINE_L2 1430 1936 61 + . . . . . -1 -1 -1 . . . C35260 WUBlastX LINE_L2 2014 2238 43 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Ngaro 638520 638711 32 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Ngaro 638705 639091 72 + . . . . . -1 -1 -1 . . . C24640 WUBlastX LINE_Penelope 370 669 40 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_L1-Tx1 17752 17973 69 - . . scaffold39804 GLEAN mRNA 15936 20719 1 + . ID=CGI_10003618; scaffold39804 WUBlastX LINE_L1-Tx1 18330 18596 50 - . . scaffold39804 GLEAN mRNA 15936 20719 1 + . ID=CGI_10003618; scaffold919 WUBlastX LINE_R2 65766 66227 112 - . . . . . -1 -1 -1 . . . C31884 WUBlastX LTR_Gypsy-Cigr 1098 1667 110 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 33649 33894 83 - . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_L1-Tx1 12432 12743 39 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 647894 649093 814 + . . scaffold678 GLEAN mRNA 636648 664664 0.986036 - . ID=CGI_10026369; scaffold1327 WUBlastX LTR_Gypsy 217600 218916 882 - . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LINE_L1-Tx1 55241 56704 407 - . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LINE_L1-Tx1 56852 57454 348 - . . . . . -1 -1 -1 . . . scaffold39470 WUBlastX LTR_Ngaro 21171 22466 948 - . . scaffold39470 GLEAN mRNA 18519 32880 0.998788 - . ID=CGI_10003379; scaffold1715 WUBlastX DNA_hAT-Tip100 469011 471005 975 - . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX DNA_hAT 217362 217526 80 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold41598 WUBlastX DNA_En-Spm 61070 61492 119 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_En-Spm 61492 61686 22 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold43662 WUBlastX DNA_hAT-Blackja 45205 45321 45 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX DNA_Maverick 196933 197067 42 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LTR_DIRS 84972 86003 342 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold1066 WUBlastX LTR_Pao 109324 109818 283 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L1-Tx1 538580 539827 125 - . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_L2 761 1087 114 - . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_L2 1138 1422 198 - . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_L2 1536 2927 496 - . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_L2 3037 3417 91 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 752466 753179 150 - . . scaffold20 GLEAN mRNA 752421 753041 1 - . ID=CGI_10023596; scaffold175 WUBlastX LINE_L1 586646 587386 76 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LTR_Gypsy 543458 543661 22 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-BovB 81799 82959 121 - . . . . . -1 -1 -1 . . . scaffold1838 WUBlastX LINE_RTE-X 99022 99558 125 + . . scaffold1838 GLEAN mRNA 95415 110660 0.499812 + . ID=CGI_10014243; scaffold42402 WUBlastX LINE_L1-Tx1 10189 10386 35 + . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy-Cigr 48690 50006 730 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 253734 255497 880 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Ngaro 353834 355483 1134 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1210517 1211200 159 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_RTE-X 16690 16821 43 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX DNA_Sola 12602 12784 79 - . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LTR_Gypsy 93311 94438 184 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 91569 92111 144 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_CR1-L2 447827 448234 87 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-X 626231 627949 694 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_RTE-X 627987 629528 284 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_Kolobok 56501 56917 150 - . . scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold35466 WUBlastX DNA_TcMar-Tc1 18285 18476 45 - . . . . . -1 -1 -1 . . . scaffold1721 WUBlastX LINE_RTE-BovB 14605 14676 42 + . . . . . -1 -1 -1 . . . scaffold1721 WUBlastX LINE_RTE-BovB 14697 14852 70 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX DNA_Sola 518942 519571 151 + . . . . . -1 -1 -1 . . . scaffold1654 WUBlastX DNA_hAT-Tip100 54088 55845 1290 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 747003 747167 79 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_Harbinger 288337 288423 53 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_Harbinger 288530 288706 132 - . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX DNA_IS4EU 31078 31560 158 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_MuDR 579064 579261 97 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold286 WUBlastX DNA_Kolobok 208129 208362 67 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold317 WUBlastX LINE_L1 171650 172162 174 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_RTE-X 131167 131223 44 + . . scaffold42402 GLEAN mRNA 124224 132825 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 131167 131223 44 + . . scaffold42402 GLEAN mRNA 127799 151962 1 + . ID=CGI_10006796; scaffold1527 WUBlastX LINE_RTE-X 87657 88613 103 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-X 220213 220545 182 - . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX LTR_Ngaro 114816 115154 181 + . . . . . -1 -1 -1 . . . scaffold41540 WUBlastX DNA_TcMar-Tc1 1958 2797 146 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LTR_Gypsy 295693 297288 1095 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 281409 282695 438 - . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_DIRS 45896 46546 54 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Ngaro 644393 644446 24 + . . scaffold102 GLEAN mRNA 643973 666734 0.499984 + . ID=CGI_10028445; scaffold790 WUBlastX LINE_L1-Tx1 127713 128261 153 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 90509 90733 78 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold425 WUBlastX DNA_TcMar-Fot1 218124 219089 184 - . . . . . -1 -1 -1 . . . scaffold42726 WUBlastX DNA_TcMar-Tc1 160111 160725 33 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 132849 133040 78 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_En-Spm 437516 437902 139 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX DNA_Harbinger 375594 375953 64 + . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX DNA_Harbinger 376031 376177 134 + . . . . . -1 -1 -1 . . . scaffold467 WUBlastX LINE_L1 43909 44376 185 + . . . . . -1 -1 -1 . . . scaffold41732 WUBlastX LINE_Rex-Babar 59588 59659 26 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold1083 WUBlastX LTR_Gypsy-Cigr 460017 460517 211 - . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LTR_Gypsy-Cigr 460965 461465 211 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX DNA_Sola 895988 896767 107 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_L1-Tx1 379271 379858 71 - . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LTR_DIRS 205534 205608 30 + . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX LTR_Gypsy 119866 120177 206 + . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold38116 WUBlastX LTR_Gypsy 15429 15887 104 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Gypsy 207070 207393 163 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 193135 193419 139 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 424869 425084 91 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 425797 426060 66 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LTR_Gypsy 894619 895491 197 - . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_L1 139287 139745 210 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX DNA_Maverick 505953 506399 234 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_Maverick 132772 133248 232 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy 370749 371363 105 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_Maverick 638983 639300 184 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_Maverick 639538 639984 175 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_Maverick 639997 642297 1371 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 499928 500029 37 - . . . . . -1 -1 -1 . . . scaffold339 WUBlastX DNA_IS4EU 15243 15443 63 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Kolobok-IS4 17915 18469 81 + . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_L1 242491 242940 44 + . . . . . -1 -1 -1 . . . scaffold1156 WUBlastX LINE_L1-Tx1 14315 15247 134 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 118404 119384 607 + . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Gypsy 76974 77489 243 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 318238 318372 44 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX DNA_TcMar-Fot1 211785 211937 49 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX DNA_TcMar-Fot1 211113 211268 59 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX DNA_TcMar-Fot1 211423 211572 83 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LINE_L1 39929 40654 145 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold1030 WUBlastX LTR_Pao 23007 23699 117 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Ngaro 305794 306246 266 + . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX DNA_Harbinger 2870 3070 102 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LINE_RTE-X 63337 63552 130 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 16806 17141 423 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 17801 19867 1888 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L2 14717 15055 111 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L2 15319 15633 173 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_Harbinger 17889 18092 66 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 18609 18722 60 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold415 WUBlastX LTR_Gypsy 74194 74493 80 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_RTE-X 318188 318502 145 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold1897 WUBlastX LINE_CR1-L2 444661 445011 86 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LTR_DIRS 615345 616181 609 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_DIRS 616154 617539 1207 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_DIRS 618342 618959 513 - . . scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold1217 WUBlastX LTR_Ngaro 51639 51980 102 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_Harbinger 512157 512735 225 + . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX DNA_TcMar-Tc1 69760 70629 212 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 106898 107440 295 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 4107 4319 91 - . . scaffold1448 GLEAN mRNA 631 18510 0.999948 + . ID=CGI_10011852; scaffold191 WUBlastX LINE_RTE-BovB 734832 735659 241 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1-Tx1 586835 588160 165 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy 66089 66151 23 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 100436 100645 143 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 918494 918808 40 + . . . . . -1 -1 -1 . . . C35786 WUBlastX LINE_L1 14992 15069 25 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX RC_Helitron 150734 151387 251 - . . scaffold550 GLEAN mRNA 134556 152020 0.969581 - . ID=CGI_10012490; scaffold801 WUBlastX DNA_IS4EU 547779 548162 121 + . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 28055 29968 384 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 458696 458776 32 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 459352 459498 55 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_P 460594 460764 79 - . . . . . -1 -1 -1 . . . C36038 WUBlastX LTR_Gypsy 20599 20688 48 - . . . . . -1 -1 -1 . . . C36038 WUBlastX LTR_Gypsy 20663 21172 257 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LINE_L1 29405 29644 145 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 749416 750267 297 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_CR1 398265 398594 89 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1123 WUBlastX LTR_Ngaro 266837 267025 87 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_Gypsy 251877 252395 227 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold1032 WUBlastX LINE_RTE-X 98761 99414 149 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_TcMar-Tc1 50288 50671 109 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 242918 243163 43 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_RTE-BovB 310661 311083 170 - . . scaffold1671 GLEAN mRNA 303116 311549 0.243132 + . ID=CGI_10015154; scaffold1671 WUBlastX LINE_RTE-BovB 311049 311414 240 - . . scaffold1671 GLEAN mRNA 303116 311549 0.243132 + . ID=CGI_10015154; scaffold33842 WUBlastX LINE_L1-Tx1 7652 8116 100 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX DNA_En-Spm 53461 54555 345 + . . scaffold1729 GLEAN mRNA 50402 60273 0.999674 + . ID=CGI_10008485; scaffold588 WUBlastX LINE_Proto2 410254 411273 51 - . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LINE_CR1 284096 285157 319 + . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LINE_L2 19029 19508 228 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold847 WUBlastX LINE_L1 706496 707272 78 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold102 WUBlastX LTR_Gypsy 736083 736259 109 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Kolobok 4139 4312 74 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1586 WUBlastX LINE_RTE-X 72135 72788 139 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_TcMar-Pogo 208873 209862 207 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_TcMar-Pogo 209778 210257 210 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 112896 113684 259 + . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LINE_RTE-X 54711 55181 142 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L2 23093 24196 396 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LINE_CR1 38420 39811 404 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 222825 223085 23 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 102140 103231 312 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 502851 503378 151 - . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX DNA_hAT-hATw 103057 103404 79 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LINE_L1-Tx1 295587 297092 244 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1-Tx1 1146566 1148068 410 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LINE_CR1-L2 401993 402385 134 + . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX DNA_Sola 24662 25870 584 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1074675 1074995 52 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold186 WUBlastX LTR_DIRS 293794 294366 119 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LTR_DIRS 294519 294800 137 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LTR_DIRS 294808 295524 348 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_L1-Tx1 237198 238337 319 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold1195 WUBlastX LINE_L1-Tx1 288616 289032 211 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 541994 542332 28 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 544207 544395 128 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 217738 218121 163 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 682176 682595 349 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 683186 683347 87 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 682786 683061 116 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1024 WUBlastX LTR_Ngaro 1209590 1210390 655 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Ngaro 469058 469213 92 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold721 WUBlastX LINE_RTE-X 158882 159334 294 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LINE_L2 708162 708413 62 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy 74515 74802 225 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Gypsy 42983 43069 48 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 264063 264389 172 - . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 54251 54610 73 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 60277 61632 720 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_L1 258276 258476 93 + . . scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold461 WUBlastX DNA_hAT-Tip100 35868 37436 498 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 416251 417645 247 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1-Tx1 136826 136960 47 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_RTE-X 324582 326558 388 - . . . . . -1 -1 -1 . . . C23400 WUBlastX LINE_L1-Tx1 880 2199 785 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 848352 849539 308 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 849635 850954 272 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 851085 851312 112 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LTR_Pao 728471 728674 54 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LTR_Pao 1026682 1026807 29 - . . scaffold1836 GLEAN mRNA 1025204 1064430 0.980298 - . ID=CGI_10026321; scaffold783 WUBlastX LINE_L1 267131 267475 50 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_TcMar-ISRm1 1037906 1038025 56 - . . scaffold481 GLEAN mRNA 1037973 1041355 0.978909 - . ID=CGI_10027258; scaffold313 WUBlastX LTR_Pao 1141372 1141713 55 - . . scaffold313 GLEAN mRNA 1139830 1142218 0.91163 - . ID=CGI_10026640; scaffold121 WUBlastX LTR_Copia 873699 874085 26 + . . scaffold121 GLEAN mRNA 873837 879402 0.999211 + . ID=CGI_10025682; scaffold1098 WUBlastX LINE_L2 129161 129367 72 + . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX LINE_CR1-L2 234890 235273 28 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_CR1 327026 327082 39 + . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LINE_L2 253892 253945 21 + . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LINE_L2 253951 254112 57 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Gypsy 171665 171928 79 - . . . . . -1 -1 -1 . . . scaffold35272 WUBlastX LTR_Gypsy 3423 3929 22 + . . scaffold35272 GLEAN mRNA 3165 4829 0.999572 + . ID=CGI_10001464; scaffold143 WUBlastX LTR_Ngaro 16065 16325 46 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Ngaro 255665 256150 35 - . . . . . -1 -1 -1 . . . scaffold38848 WUBlastX LINE_L2 29057 29368 41 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX LTR_Gypsy 129556 129744 69 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX DNA_Harbinger 163479 163631 51 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX DNA_hAT-Ac 95119 95166 24 + . . scaffold424 GLEAN mRNA 91671 98594 0.990391 - . ID=CGI_10014353; C35716 WUBlastX DNA_IS4EU 17617 17835 47 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_IS4EU 580897 581310 54 - . . scaffold365 GLEAN mRNA 578843 581397 0.999968 - . ID=CGI_10022744; scaffold365 WUBlastX DNA_IS4EU 580897 581310 54 - . . scaffold365 GLEAN mRNA 570241 589384 0.479657 + . ID=CGI_10022743; scaffold386 WUBlastX DNA_IS4EU 212915 213151 44 + . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold1307 WUBlastX LINE_L1 789665 789955 46 + . . . . . -1 -1 -1 . . . C24814 WUBlastX LINE_L1 1 165 69 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L1 222079 222612 65 - . . scaffold790 GLEAN mRNA 221752 222957 0.977562 - . ID=CGI_10013171; scaffold43630 WUBlastX LINE_L1 288357 288551 71 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_L1 317213 317725 53 + . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LINE_L1-Tx1 45933 46298 22 - . . . . . -1 -1 -1 . . . scaffold1783 WUBlastX LTR_ERV1 24950 25411 60 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX DNA_NOF 151960 152085 63 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_TcMar-Marin 112242 112559 22 - . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold334 WUBlastX DNA_TcMar-Marin 922186 922380 32 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-X 648020 648298 61 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX DNA_Maverick 234038 234448 46 + . . . . . -1 -1 -1 . . . scaffold34144 WUBlastX DNA_Maverick 754 1131 50 - . . scaffold34144 GLEAN mRNA 1054 1558 0.995722 - . ID=CGI_10001218; scaffold44008 WUBlastX LINE_RTE-BovB 199498 199710 47 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_MuDR 345703 345870 70 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_RTE-X 471447 471785 23 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_L1-Tx1 51735 52025 71 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 8371 8706 35 - . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX LINE_L1-Tx1 49234 49449 26 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 1597790 1598275 26 + . . scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold1850 WUBlastX LTR_Gypsy 245720 245812 21 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_TcMar-Tc1 713543 713875 33 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 550267 550572 50 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_L2 327759 328013 72 - . . . . . -1 -1 -1 . . . scaffold1881 WUBlastX LINE_L2 53329 53520 31 - . . . . . -1 -1 -1 . . . scaffold1881 WUBlastX LINE_L2 53534 53641 29 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_CR1 6440 6490 40 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_Crypton 726551 726898 66 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_Crypton 727450 727587 25 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX DNA_TcMar-Marin 94851 95072 73 + . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LINE_L2 54942 55265 45 + . . . . . -1 -1 -1 . . . scaffold1295 WUBlastX LTR_Lenti 1894 1953 40 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Lenti 81683 81742 40 + . . . . . -1 -1 -1 . . . scaffold32488 WUBlastX DNA_MuDR 6023 6379 58 - . . scaffold32488 GLEAN mRNA 5990 10777 0.98602 - . ID=CGI_10000899; scaffold1293 WUBlastX LINE_Penelope 28778 28963 57 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LINE_I 87913 88017 22 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_Penelope 169512 169703 25 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 168741 169067 58 - . . . . . -1 -1 -1 . . . scaffold855 WUBlastX DNA_Maverick 3229 3360 50 + . . scaffold855 GLEAN mRNA 754 11189 0.999983 + . ID=CGI_10001160; scaffold1711 WUBlastX DNA_Maverick 245727 245873 95 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1079158 1079424 65 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold713 WUBlastX LINE_RTE-BovB 41366 41713 69 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LINE_RTE-X 401548 401952 34 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX LINE_RTE-X 362706 363104 49 - . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-X 241314 241595 62 - . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_L2 119604 119876 45 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 695949 696938 70 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold40808 WUBlastX LINE_CR1-L2 44113 44508 58 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L2 707408 707992 52 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LTR_Gypsy-Cigr 78881 79429 32 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L2 238643 238936 52 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LTR_DIRS? 360911 361039 48 + . . . . . -1 -1 -1 . . . scaffold41902 WUBlastX LINE_L1 12381 12419 23 - . . . . . -1 -1 -1 . . . C26448 WUBlastX DNA_Kolobok 2556 2855 47 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_TcMar-Fot1 64848 65045 64 - . . scaffold681 GLEAN mRNA 61241 68104 0.482696 + . ID=CGI_10014722; scaffold599 WUBlastX LINE_RTE-X 278394 278561 64 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1369163 1369804 37 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 883038 883487 90 - . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_CR1 136082 136708 56 - . . scaffold294 GLEAN mRNA 124940 137273 0.889486 - . ID=CGI_10010334; scaffold116 WUBlastX LTR_Gypsy 34644 34946 117 - . . scaffold116 GLEAN mRNA 34503 34832 0.733461 - . ID=CGI_10009411; scaffold72 WUBlastX LTR_Gypsy 114219 114329 49 + . . . . . -1 -1 -1 . . . scaffold41162 WUBlastX DNA_IS4EU 71457 71618 27 + . . scaffold41162 GLEAN mRNA 69250 72340 0.651134 + . ID=CGI_10004776; scaffold365 WUBlastX RC_Helitron 271259 271690 73 + . . scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold557 WUBlastX RC_Helitron 397509 397940 73 - . . scaffold557 GLEAN mRNA 389014 397940 0.685724 - . ID=CGI_10017978; scaffold37424 WUBlastX DNA_Harbinger 15773 15868 25 - . . scaffold37424 GLEAN mRNA 14406 15898 1 - . ID=CGI_10002371; scaffold37424 WUBlastX DNA_Harbinger 15867 16082 59 - . . scaffold37424 GLEAN mRNA 14406 15898 1 - . ID=CGI_10002371; scaffold366 WUBlastX DNA_Kolobok-Hyd 179715 180239 22 + . . . . . -1 -1 -1 . . . scaffold38824 WUBlastX LINE_RTE-X 21494 21823 20 - . . . . . -1 -1 -1 . . . scaffold38824 WUBlastX LINE_RTE-X 22171 22221 20 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_RTE-X 470862 470948 36 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 128671 128913 46 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 665549 665662 37 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-BovB 513321 513629 80 + . . . . . -1 -1 -1 . . . scaffold577 WUBlastX LINE_RTE-X 33628 33795 85 + . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_CR1-L2 92187 92267 25 - . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_L2 25619 25846 23 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold432 WUBlastX LINE_CR1-L2 479451 480005 27 + . . . . . -1 -1 -1 . . . scaffold37698 WUBlastX LINE_L2 43479 44138 97 - . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX DNA_Harbinger 61712 61870 47 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_hAT-Tip100 17862 18164 101 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 324644 324799 27 - . . . . . -1 -1 -1 . . . C24900 WUBlastX DNA_Kolobok-IS4 590 847 96 - . . . . . -1 -1 -1 . . . scaffold1533 WUBlastX LINE_RTE-BovB 342000 342125 49 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LINE_RTE-X 70333 70683 63 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_RTE-X 111908 112120 23 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_RTE-X 112150 112281 44 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 1190150 1190269 34 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold198 WUBlastX LINE_RTE-X 1480897 1481124 77 - . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 374830 375171 96 - . . . . . -1 -1 -1 . . . scaffold80 WUBlastX LINE_RTE-BovB 15442 15528 54 - . . . . . -1 -1 -1 . . . scaffold80 WUBlastX LINE_RTE-BovB 15542 15628 59 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L1-Tx1 347157 347351 50 + . . scaffold786 GLEAN mRNA 340138 347810 1 + . ID=CGI_10013708; scaffold206 WUBlastX DNA_En-Spm 128485 128706 95 - . . scaffold206 GLEAN mRNA 123903 131741 0.999975 - . ID=CGI_10011374; scaffold35438 WUBlastX DNA_Harbinger 23541 23996 119 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_TcMar-Marin 293605 293946 102 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_RTE-X 164558 164731 36 - . . . . . -1 -1 -1 . . . C28684 WUBlastX LINE_L2 5225 5788 110 - . . . . . -1 -1 -1 . . . scaffold718 WUBlastX LINE_CR1-L2 15993 16340 23 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L2 1200590 1200661 21 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L2 1200655 1200789 53 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Ngaro 1269849 1270187 119 - . . . . . -1 -1 -1 . . . C32472 WUBlastX LTR_Gypsy 559 693 121 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 323617 323877 155 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold393 WUBlastX LINE_RTE-X 1197026 1197244 126 - . . . . . -1 -1 -1 . . . scaffold35110 WUBlastX LINE_L2 5852 6391 117 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_L2 48292 48426 33 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 518843 519313 39 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX DNA_hAT 724520 725299 76 - . . scaffold432 GLEAN mRNA 720813 726190 0.996496 - . ID=CGI_10023119; scaffold38822 WUBlastX DNA_Harbinger 56447 56548 21 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_Penelope 127380 127655 51 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 127955 128191 33 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold37790 WUBlastX LINE_L1 43822 44016 36 - . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1-Tx1 99945 100220 62 - . . . . . -1 -1 -1 . . . scaffold43240 WUBlastX DNA_TcMar-Tc1 142804 143196 40 - . . . . . -1 -1 -1 . . . scaffold41162 WUBlastX LINE_L1-Tx1 68278 68811 52 + . . . . . -1 -1 -1 . . . scaffold41162 WUBlastX LINE_L1-Tx1 69062 69211 22 + . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_L1-Tx1 249273 249737 78 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 902164 902541 115 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_CR1 134668 134796 23 + . . . . . -1 -1 -1 . . . scaffold371 WUBlastX LINE_L2 87792 88526 87 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LINE_L1 50747 51307 105 - . . . . . -1 -1 -1 . . . C16696 WUBlastX LTR_Gypsy 25 405 47 - . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LINE_L1-Tx1 60428 60955 105 - . . . . . -1 -1 -1 . . . C27020 WUBlastX LINE_RTE-X 4200 4343 152 + . . . . . -1 -1 -1 . . . scaffold993 WUBlastX LINE_RTE-X 90585 91055 142 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-X 1217601 1217822 39 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_R1 126259 126336 30 - . . . . . -1 -1 -1 . . . scaffold41174 WUBlastX LINE_RTE-X 61610 61990 114 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold43798 WUBlastX DNA_Sola 133838 134101 98 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX DNA_Sola 162607 162756 31 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX DNA_Sola 163011 163664 121 + . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1-Tx1 958 1191 39 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L1-Tx1 117044 117160 22 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_CR1-L2 673318 673728 54 - . . scaffold6 GLEAN mRNA 669450 677435 1 + . ID=CGI_10022331; scaffold321 WUBlastX LTR_Gypsy 44689 45594 944 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Ngaro 246530 247774 846 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_RTE-X 560768 561169 140 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_L2 159367 159561 71 - . . scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold253 WUBlastX LINE_L2 9308 9682 97 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold1639 WUBlastX DNA_Harbinger 34901 35188 54 + . . scaffold1639 GLEAN mRNA 27466 42582 0.863535 + . ID=CGI_10005437; C12264 WUBlastX LTR_Gypsy 2 190 154 + . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_RTE-X 84211 84546 104 - . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_RTE-X 49519 49812 139 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX DNA_TcMar-Tc1 141340 142347 98 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_L1-Tx1 297752 297970 38 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_CR1-L2 164300 164521 29 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_CR1-L2 164567 164869 203 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_CR1-L2 165108 165515 268 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_RTE-X 200621 202603 878 + . . scaffold43446 GLEAN mRNA 175111 204349 0.996568 - . ID=CGI_10010404; scaffold1137 WUBlastX LTR_Pao 4976 5527 298 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Copia 1042356 1042601 60 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_CR1-L2 58125 58526 127 - . . . . . -1 -1 -1 . . . scaffold527 WUBlastX LINE_CR1-L2 79112 79711 122 + . . . . . -1 -1 -1 . . . scaffold39960 WUBlastX LINE_L2 81932 82594 124 + . . . . . -1 -1 -1 . . . scaffold38078 WUBlastX LINE_L2 50982 51644 124 + . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LINE_L2 41572 41676 23 + . . scaffold40786 GLEAN mRNA 22180 42004 0.650709 + . ID=CGI_10004440; scaffold40786 WUBlastX LINE_L2 41639 42037 113 + . . scaffold40786 GLEAN mRNA 22180 42004 0.650709 + . ID=CGI_10004440; scaffold400 WUBlastX LINE_L2 264815 265330 107 - . . scaffold400 GLEAN mRNA 262709 267661 0.544852 - . ID=CGI_10011440; scaffold257 WUBlastX LINE_RTE-X 318558 319394 52 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold37148 WUBlastX LINE_RTE-BovB 10384 10992 44 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 11030 11209 69 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold43538 WUBlastX LINE_RTE-X 4372 4821 107 + . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_RTE-X 3735 3863 21 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 172615 172794 38 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_L1-Tx1 128824 129201 143 + . . . . . -1 -1 -1 . . . scaffold1501 WUBlastX DNA_hAT-Tip100 4958 6253 840 - . . . . . -1 -1 -1 . . . scaffold1501 WUBlastX DNA_hAT-Tip100 6274 6750 316 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L1 478868 478951 43 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 169423 169950 145 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold610 WUBlastX LTR_Gypsy 128880 129476 85 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold579 WUBlastX DNA_MuDR 76520 77752 125 - . . scaffold579 GLEAN mRNA 74827 78935 0.999224 - . ID=CGI_10011260; scaffold170 WUBlastX LINE_RTE-X 107545 107883 63 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX DNA_Maverick 5368 5502 47 - . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LINE_RTE-X 30430 30504 26 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 33559 34578 498 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold1448 WUBlastX LINE_RTE-X 245136 245426 113 + . . . . . -1 -1 -1 . . . C33664 WUBlastX LINE_L1-Tx1 432 1007 83 - . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Maverick 10950 11021 21 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LTR_Pao 13423 14046 218 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_hAT-hATw 150057 150461 253 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_hAT-hATw 150446 150832 259 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_hAT-hATw 150831 151088 121 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 39172 39396 53 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LTR_Gypsy 209296 209847 124 - . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_MuDR 30785 30982 71 + . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_MuDR 30961 31365 74 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1 124830 125000 62 - . . scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold602 WUBlastX LTR_Ngaro 79859 80398 75 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_PiggyBac 517333 517491 29 - . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_RTE-X 218194 218607 166 + . . . . . -1 -1 -1 . . . C25290 WUBlastX LINE_RTE-X 1965 3191 69 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Sola 784503 784895 138 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 702642 702788 51 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 702800 703012 109 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 703122 704060 416 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 703990 704325 152 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 704306 705181 431 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LTR_Gypsy 95826 96260 31 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold453 WUBlastX LTR_Ngaro 330759 330893 33 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_L1-Tx1 43890 44522 50 - . . . . . -1 -1 -1 . . . scaffold1058 WUBlastX LTR_Gypsy-Cigr 38810 41770 1252 - . . . . . -1 -1 -1 . . . scaffold1264 WUBlastX LINE_L1 135433 136242 326 + . . scaffold1264 GLEAN mRNA 129263 151960 0.5 - . ID=CGI_10007176; scaffold40680 WUBlastX LINE_L2 70115 70369 128 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_CR1-L2 245296 245400 21 + . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_RTE-X 96543 96731 81 - . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LINE_RTE-X 36428 37108 129 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 319324 319659 130 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_Gypsy 101812 102780 226 + . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_RTE-BovB 262869 263051 43 + . . scaffold410 GLEAN mRNA 261101 270903 0.399222 + . ID=CGI_10020632; scaffold42450 WUBlastX LTR_Ngaro 148411 148503 31 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 796921 797148 56 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_Harbinger 17862 18113 43 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold210 WUBlastX LTR_Gypsy 279630 279926 147 - . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Maverick 10962 11021 28 + . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX LTR_Gypsy 60972 61718 97 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_IS4EU 851645 851911 68 + . . . . . -1 -1 -1 . . . C31910 WUBlastX DNA_TcMar-Tc2 4076 4141 48 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_RTE-X 188071 188679 40 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Pao 65862 66473 116 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold415 WUBlastX LTR_Gypsy 81417 82025 269 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy 371617 372198 89 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy 66545 67939 869 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy 67978 69975 974 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_Harbinger 14007 14306 88 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX DNA_Kolobok-IS4 312766 312867 21 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LINE_Penelope 99397 99840 170 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_RTE-X 676320 676523 66 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 576773 577015 75 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold1631 WUBlastX DNA_Maverick 70886 71179 137 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_CR1-L2 469429 469884 222 + . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX LINE_L2 153991 154467 197 - . . scaffold1734 GLEAN mRNA 152020 160994 0.46186 + . ID=CGI_10010541; scaffold17 WUBlastX LTR_Ngaro 4899 5279 97 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1-Tx1 247728 247862 51 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold419 WUBlastX DNA_Maverick 1357550 1357873 192 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Maverick 1358489 1360783 1492 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_L1-Tx1 109153 111879 1739 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_L1-Tx1 111860 112732 89 + . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX RC_Helitron 188713 188877 101 + . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX RC_Helitron 188867 189400 229 + . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LINE_RTE-X 293053 293616 67 + . . scaffold1865 GLEAN mRNA 265949 318343 0.640148 - . ID=CGI_10013547; scaffold1833 WUBlastX DNA_Academ 174993 175949 243 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_Maverick 320268 320591 48 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 171727 171927 88 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LTR_DIRS 107601 107861 26 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_RTE-X 235951 236139 37 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 3536 4117 143 + . . . . . -1 -1 -1 . . . scaffold38372 WUBlastX DNA_Crypton 43740 44105 32 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1-Tx1 112438 113028 82 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy 598771 599439 531 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy 599849 600565 624 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy 600564 601205 667 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy 601205 601684 371 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy 601681 602175 411 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L2 109586 110326 268 + . . . . . -1 -1 -1 . . . scaffold34356 WUBlastX LTR_Gypsy 16116 16871 182 + . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_Harbinger 26292 26501 130 + . . scaffold37880 GLEAN mRNA 25813 26910 0.999833 + . ID=CGI_10002534; scaffold1255 WUBlastX DNA_Kolobok 4244 4744 53 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold40 WUBlastX LINE_Penelope 7080 8180 220 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_TcMar-Tc1 752467 752898 95 + . . . . . -1 -1 -1 . . . scaffold715 WUBlastX LTR_Gypsy 65036 65296 192 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_L1-Tx1 362187 362417 45 - . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LINE_L2 441480 441848 41 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 226250 226345 24 - . . . . . -1 -1 -1 . . . C33646 WUBlastX LTR_DIRS 4861 5253 156 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_L1-Tx1 162390 162596 27 - . . scaffold911 GLEAN mRNA 159613 170351 0.499121 + . ID=CGI_10012141; scaffold177 WUBlastX LTR_Gypsy 371226 372215 306 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_IS4EU 201603 202190 207 + . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_IS4EU 146958 147308 35 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 202134 202256 69 - . . scaffold1772 GLEAN mRNA 201858 204314 0.999554 - . ID=CGI_10014812; C28702 WUBlastX LTR_Gypsy 4594 5109 267 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_RTE-X 22358 22780 168 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_RTE-X 22795 24087 108 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold337 WUBlastX DNA_TcMar-Marin 839980 840189 104 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Gypsy 124425 124466 20 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold664 WUBlastX LTR_Pao 649137 649508 190 + . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1347 WUBlastX LTR_Gypsy 65479 65880 401 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_R2-Hero 178484 178585 57 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_R2-Hero 178902 179399 185 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Gypsy 370002 370091 28 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1-Tx1 472142 473353 92 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_L1-Tx1 22075 22650 72 + . . . . . -1 -1 -1 . . . scaffold43530 WUBlastX LINE_RTE-X 64630 65484 341 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_TcMar-Tc1 196391 196744 193 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX DNA_Kolobok 11319 11447 104 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 11578 12072 72 - . . . . . -1 -1 -1 . . . scaffold1418 WUBlastX DNA_Kolobok-IS4 18284 18595 84 - . . . . . -1 -1 -1 . . . scaffold42766 WUBlastX DNA_hAT-Tip100 5309 5530 34 - . . scaffold42766 GLEAN mRNA 582 5602 0.982593 - . ID=CGI_10007660; scaffold221 WUBlastX DNA_Harbinger 78728 79528 281 - . . scaffold221 GLEAN mRNA 79166 80425 0.999137 - . ID=CGI_10008344; scaffold557 WUBlastX LTR_DIRS 206709 206957 112 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX DNA_TcMar-Tc1 775526 776344 315 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX DNA_MuDR 271159 272619 355 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_RTE-X 116776 117717 261 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 692994 693200 68 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L2 195143 195676 268 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L2 196064 196435 38 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_CR1 257527 257862 151 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_CR1 258228 258374 65 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 121065 122042 209 - . . . . . -1 -1 -1 . . . scaffold35902 WUBlastX LINE_L1-Tx1 27589 28083 422 + . . scaffold35902 GLEAN mRNA 22250 28263 0.990718 - . ID=CGI_10001652; scaffold1501 WUBlastX DNA_hAT-Tip100 6776 7174 99 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_RTE-X 145494 145973 196 - . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX DNA_hAT 217320 217526 53 + . . scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold973 WUBlastX LTR_DIRS 227087 227593 127 - . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_RTE-X 107204 107767 69 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; C33084 WUBlastX LINE_RTE-BovB 12746 13339 451 - . . . . . -1 -1 -1 . . . scaffold516 WUBlastX LINE_RTE-BovB 8436 8945 434 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_L2 437101 438114 417 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_Kolobok 208168 208365 121 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 208522 208674 61 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 208881 209042 84 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 209128 209268 52 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold1424 WUBlastX LINE_L1-Tx1 69804 70286 45 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LINE_L2 33503 33847 175 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_Maverick 641155 642591 405 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_DIRS 136560 136868 128 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_RTE-X 782910 783008 56 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_CR1-L2 143669 144220 50 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX DNA_En-Spm 144725 144871 44 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX DNA_En-Spm 147056 147388 84 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy 40161 40445 54 + . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LINE_L1 277 1629 414 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_RTE-X 136420 136680 76 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_L1-Tx1 50636 51523 499 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_IS4EU 445829 445966 35 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_IS4EU 446846 447163 72 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_IS4EU 447159 447833 431 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_DIRS 739562 740014 65 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_DIRS 740020 740490 291 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_DIRS 740461 741051 145 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 115191 115406 56 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 115706 116164 213 + . . . . . -1 -1 -1 . . . scaffold39144 WUBlastX DNA_Helitron 1946 3997 588 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LTR_Gypsy 95976 97124 212 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold828 WUBlastX LTR_Gypsy 97448 97891 222 - . . scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold106 WUBlastX LTR_Gypsy 699286 699771 46 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_RTE-X 586669 587613 631 - . . scaffold168 GLEAN mRNA 580127 599947 0.430988 + . ID=CGI_10025600; C33580 WUBlastX LTR_Pao 9784 10056 91 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 516783 517523 289 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 517426 518079 450 + . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LTR_Gypsy 277480 277860 32 - . . . . . -1 -1 -1 . . . C34122 WUBlastX LTR_Gypsy 10935 11363 299 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 10686 11165 69 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 11367 11756 290 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold1255 WUBlastX LTR_Gypsy 393301 393615 35 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold348 WUBlastX LINE_L1-Tx1 131739 132137 131 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 498679 499008 207 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Gypsy 193529 193993 294 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold378 WUBlastX LINE_RTE-X 320524 322017 522 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 484929 484970 20 - . . . . . -1 -1 -1 . . . scaffold473 WUBlastX LTR_Gypsy 26146 26367 118 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1-Tx1 733590 735881 542 - . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX LINE_RTE-X 303363 305552 704 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 652412 654253 770 + . . scaffold128 GLEAN mRNA 640571 661683 0.836156 - . ID=CGI_10021536; scaffold1 WUBlastX LINE_L2 169134 169247 32 + . . scaffold1 GLEAN mRNA 163980 185527 0.742263 + . ID=CGI_10013469; scaffold43136 WUBlastX LINE_CR1-L2 99707 99895 36 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L2 543171 543455 30 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_Merlin 101184 101480 57 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX DNA_TcMar-ISRm1 6283 6462 66 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LTR_Pao 144653 144787 25 + . . scaffold1741 GLEAN mRNA 144116 145129 0.999285 + . ID=CGI_10024025; scaffold664 WUBlastX LTR_Gypsy 472294 472446 41 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LTR_Gypsy 98857 99288 41 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy-Cigr 758412 758705 57 + . . . . . -1 -1 -1 . . . scaffold8 WUBlastX LTR_Gypsy-Cigr 118 492 39 + . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LTR_Gypsy-Cigr 72455 72724 71 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 592071 592307 83 + . . scaffold1307 GLEAN mRNA 586550 596673 0.992394 + . ID=CGI_10023769; scaffold36390 WUBlastX LTR_Gypsy 24270 24458 23 + . . scaffold36390 GLEAN mRNA 24071 24376 0.999984 + . ID=CGI_10001885; scaffold1377 WUBlastX LTR_DIRS 7737 7973 24 - . . scaffold1377 GLEAN mRNA 4634 19279 0.99195 + . ID=CGI_10008617; scaffold675 WUBlastX LINE_L2 67881 68033 30 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LTR_Gypsy 73845 74027 21 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 105982 106089 22 - . . scaffold728 GLEAN mRNA 80377 108098 0.99809 - . ID=CGI_10018228; scaffold75 WUBlastX DNA_Harbinger 43381 43518 89 - . . scaffold75 GLEAN mRNA 41103 44837 0.980383 + . ID=CGI_10005789; scaffold6 WUBlastX DNA_Harbinger 611426 611563 89 - . . scaffold6 GLEAN mRNA 604472 612930 0.854712 - . ID=CGI_10022329; scaffold169 WUBlastX DNA_Kolobok 509576 509791 41 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LINE_L1 25547 26047 23 + . . scaffold520 GLEAN mRNA 25646 27014 0.984983 + . ID=CGI_10010951; scaffold42568 WUBlastX LINE_L1 9819 10289 24 - . . scaffold42568 GLEAN mRNA 9653 9847 0.999372 + . ID=CGI_10007264; scaffold42568 WUBlastX LINE_L1 12063 12152 23 - . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LINE_L1-Tx1 85744 86169 37 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_Penelope 76699 76971 46 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_Penelope 1128003 1128176 76 + . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_P 29781 29948 50 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold588 WUBlastX LINE_Penelope 116566 116676 29 - . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX DNA_TcMar-Marin 81004 81198 52 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX DNA_TcMar-Marin 7670 7774 56 - . . . . . -1 -1 -1 . . . scaffold39074 WUBlastX DNA_TcMar-Marin 12722 12829 56 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX DNA_TcMar-Marin 232841 232948 55 + . . scaffold1098 GLEAN mRNA 223579 266249 0.353937 - . ID=CGI_10010798; scaffold1883 WUBlastX DNA_TcMar-Marin 35864 35956 32 - . . . . . -1 -1 -1 . . . C32242 WUBlastX LTR_Ngaro 5337 5636 68 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_RTE-X 106694 106897 42 - . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_RTE-BovB 40993 41622 35 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_RTE-X 16270 16500 36 + . . . . . -1 -1 -1 . . . scaffold37286 WUBlastX LINE_RTE-BovB 40839 41012 27 - . . . . . -1 -1 -1 . . . scaffold37286 WUBlastX LINE_RTE-BovB 41002 41175 35 - . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX LTR_Gypsy 60641 60829 40 - . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX LTR_Gypsy 61389 61505 63 - . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX DNA_TcMar-Marin 104150 104362 49 - . . scaffold1245 GLEAN mRNA 102403 119670 0.989696 - . ID=CGI_10009226; scaffold406 WUBlastX LINE_L1 318358 318483 49 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_TcMar-Marin 157244 157441 41 + . . scaffold286 GLEAN mRNA 149274 159610 0.543706 - . ID=CGI_10015961; scaffold1533 WUBlastX DNA_TcMar-Marin 98940 99476 32 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Tc2 360270 360674 49 + . . . . . -1 -1 -1 . . . scaffold1565 WUBlastX LINE_L1-Tx1 7522 7845 73 - . . scaffold1565 GLEAN mRNA 460 9199 1 + . ID=CGI_10000778; scaffold1021 WUBlastX LINE_L1-Tx1 592739 592846 41 - . . . . . -1 -1 -1 . . . scaffold40164 WUBlastX LINE_L1-Tx1 8156 8401 20 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold313 WUBlastX LINE_L1-Tx1 1018877 1019080 52 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; C8897 WUBlastX LTR_Pao 1 144 91 + . . . . . -1 -1 -1 . . . scaffold592 WUBlastX DNA_Academ 18815 18910 38 + . . scaffold592 GLEAN mRNA 3363 19316 0.499918 + . ID=CGI_10010700; scaffold592 WUBlastX DNA_Academ 18912 19343 68 + . . scaffold592 GLEAN mRNA 3363 19316 0.499918 + . ID=CGI_10010700; scaffold1484 WUBlastX LINE_L2 267415 267597 72 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS? 280345 280506 82 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 478078 478422 99 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 3299 3643 99 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_Penelope 1160050 1160334 35 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_MuDR 263794 264210 59 - . . scaffold583 GLEAN mRNA 263929 265960 0.540216 - . ID=CGI_10023614; scaffold793 WUBlastX DNA_NOF 67557 67619 32 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold43388 WUBlastX DNA_IS4EU 225842 225991 70 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold241 WUBlastX DNA_IS4EU 265244 265525 76 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_IS4EU 416087 416377 47 + . . . . . -1 -1 -1 . . . scaffold564 WUBlastX LINE_RTE-X 138310 138522 35 + . . . . . -1 -1 -1 . . . scaffold1771 WUBlastX LINE_RTE-X 64906 65178 74 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 194116 194706 48 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_L1-Tx1 315897 316175 70 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_L2 135793 136098 84 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Gypsy-Cigr 37723 38007 77 + . . . . . -1 -1 -1 . . . scaffold36398 WUBlastX LTR_Gypsy 29214 29636 79 - . . . . . -1 -1 -1 . . . C23428 WUBlastX LTR_Ngaro 1921 2220 85 - . . . . . -1 -1 -1 . . . C22710 WUBlastX LTR_DIRS 945 1031 24 - . . . . . -1 -1 -1 . . . scaffold1509 WUBlastX DNA_Crypton 19971 20582 56 - . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX DNA_Crypton 133428 133763 89 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold1104 WUBlastX DNA_hAT-hATw 168249 168659 85 - . . scaffold1104 GLEAN mRNA 162897 187197 0.499418 + . ID=CGI_10020361; scaffold42890 WUBlastX DNA_hAT-hATw 182355 182765 41 - . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold711 WUBlastX DNA_hAT-Tag1 181096 181419 27 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_Jockey 192033 192251 33 - . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold38978 WUBlastX DNA_Kolobok 51713 51835 25 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Kolobok-Hyd 1215922 1215996 42 + . . scaffold150 GLEAN mRNA 1213916 1217122 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1215922 1215996 42 + . . scaffold150 GLEAN mRNA 1205286 1224549 1 - . ID=CGI_10028661; scaffold895 WUBlastX LINE_RTE-RTE 110700 110738 25 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 104595 104669 46 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LTR_Ngaro 40351 40578 29 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LTR_Ngaro 40644 40739 26 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_Sola 136236 136370 77 + . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L1-Tx1 346471 346725 50 + . . scaffold786 GLEAN mRNA 340138 347810 1 + . ID=CGI_10013708; scaffold43314 WUBlastX LINE_CR1-L2 81555 81917 61 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_CR1 245075 245173 22 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-BovB 311356 311823 31 - . . . . . -1 -1 -1 . . . C29942 WUBlastX LTR_Ngaro 1091 1411 38 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Ngaro 319673 319993 38 + . . scaffold1301 GLEAN mRNA 311038 320027 0.984699 - . ID=CGI_10027714; scaffold413 WUBlastX LINE_L2 458784 459461 24 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 220105 220668 78 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_IS4EU 11612 11806 31 - . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold541 WUBlastX DNA_hAT-Tip100 26638 26853 105 + . . . . . -1 -1 -1 . . . C15226 WUBlastX LTR_Gypsy 124 288 104 - . . . . . -1 -1 -1 . . . scaffold42804 WUBlastX LINE_L1 158829 159371 39 - . . scaffold42804 GLEAN mRNA 157232 161831 0.799839 - . ID=CGI_10007780; scaffold975 WUBlastX LINE_L1-Tx1 243766 243948 42 - . . scaffold975 GLEAN mRNA 241213 250600 0.499805 - . ID=CGI_10013329; scaffold975 WUBlastX LINE_L1-Tx1 244709 244951 72 - . . scaffold975 GLEAN mRNA 241213 250600 0.499805 - . ID=CGI_10013329; scaffold1861 WUBlastX LINE_Penelope 88561 89052 60 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX DNA_TcMar-Tc2 277302 277391 34 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 193580 193972 48 - . . scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold716 WUBlastX LINE_RTE-X 218315 218713 73 + . . . . . -1 -1 -1 . . . scaffold41296 WUBlastX LINE_RTE-X 107281 107838 48 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_RTE-X 207443 207613 103 + . . scaffold1889 GLEAN mRNA 199666 208024 0.836613 - . ID=CGI_10019608; scaffold1783 WUBlastX LINE_RTE-X 26150 26551 91 + . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_RTE-X 88327 88494 56 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold39014 WUBlastX DNA_MuDR 50835 51119 30 + . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LINE_RTE-X 63100 63432 45 - . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_RTE-X 43441 43779 63 - . . scaffold398 GLEAN mRNA 36290 48236 0.999674 + . ID=CGI_10004361; scaffold1836 WUBlastX LINE_L1-Tx1 78101 78436 56 + . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LINE_CR1-L2 158868 159197 66 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_CR1-L2 199672 199830 26 + . . scaffold471 GLEAN mRNA 193246 236257 0.137865 + . ID=CGI_10027007; C20324 WUBlastX LTR_Ngaro 365 640 78 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 23243 23401 64 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1698 WUBlastX LTR_Gypsy-Cigr 81737 82225 67 - . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Harbinger 105231 105575 58 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold1452 WUBlastX DNA_IS4EU 68825 69610 73 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy 477921 478082 91 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX DNA_IS4EU 186265 186435 48 + . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX DNA_MuDR 64120 64374 82 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold358 WUBlastX LINE_RTE-X 137370 137531 55 + . . scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold598 WUBlastX DNA_TcMar-Tigge 13825 13896 32 + . . . . . -1 -1 -1 . . . scaffold35444 WUBlastX LTR_Gypsy 5940 6185 53 - . . scaffold35444 GLEAN mRNA 591 6430 0.999654 - . ID=CGI_10001555; scaffold198 WUBlastX LINE_L1-Tx1 283594 283770 44 + . . . . . -1 -1 -1 . . . scaffold32096 WUBlastX LINE_L1-Tx1 1870 2211 35 - . . . . . -1 -1 -1 . . . scaffold1452 WUBlastX DNA_TcMar-Tc1 128849 129001 62 - . . . . . -1 -1 -1 . . . scaffold1818 WUBlastX DNA_Zator 42744 42893 46 - . . scaffold1818 GLEAN mRNA 7577 56224 0.992021 - . ID=CGI_10003625; scaffold1424 WUBlastX LINE_L2 68903 69574 37 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_CR1 355891 356220 74 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 24370 24573 96 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_IS4EU 516326 516511 86 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-Ac 487692 487925 20 - . . scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold712 WUBlastX LTR_Gypsy 135222 135389 135 - . . . . . -1 -1 -1 . . . scaffold39174 WUBlastX LTR_Gypsy 12478 12549 21 + . . . . . -1 -1 -1 . . . scaffold34710 WUBlastX LINE_RTE-X 19598 19750 53 + . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LINE_L2 17729 17974 66 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Pao 197644 198333 30 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold313 WUBlastX LTR_Ngaro 647362 647601 67 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 101727 101936 84 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 101646 101927 73 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 102364 102651 48 - . . . . . -1 -1 -1 . . . C25346 WUBlastX DNA_Harbinger 2777 2914 115 + . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX LTR_Gypsy 82445 82786 119 + . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX DNA_IS4EU 29537 29653 28 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1 76730 77110 71 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_RTE-BovB 108491 108775 115 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_R1 49400 49990 39 + . . . . . -1 -1 -1 . . . C32974 WUBlastX LINE_Proto2 4929 5264 104 - . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 37950 38390 133 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX DNA_Sola 162607 162702 36 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 864609 864923 20 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 865009 865116 48 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 281144 281383 80 - . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold286 WUBlastX LINE_L2 199784 200119 125 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_Harbinger 169766 169897 24 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_Harbinger 170264 170461 102 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LTR_Gypsy 170024 170185 25 + . . . . . -1 -1 -1 . . . scaffold178 WUBlastX LINE_Penelope 104689 104937 32 - . . scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold1028 WUBlastX LINE_RTE-X 42407 42739 48 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold43494 WUBlastX DNA_TcMar-Tc1 76583 76801 23 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_PiggyBac 283352 283471 69 + . . scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold723 WUBlastX LTR_Gypsy 323353 324093 84 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 472426 472566 53 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 103384 103611 78 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_RTE-X 4997 5305 41 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 361147 361578 100 - . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX DNA_Sola 17998 18282 28 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LINE_CR1 138372 138572 39 + . . scaffold385 GLEAN mRNA 126563 138970 0.944104 - . ID=CGI_10011596; scaffold385 WUBlastX LINE_CR1 139356 139943 21 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy? 343492 344172 34 + . . . . . -1 -1 -1 . . . scaffold272 WUBlastX LINE_L2 45158 45787 91 + . . scaffold272 GLEAN mRNA 32744 62954 0.999882 + . ID=CGI_10003057; scaffold383 WUBlastX LINE_L2 408360 408653 89 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_IS4EU 670880 670984 58 + . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LTR_DIRS 39603 40886 711 + . . . . . -1 -1 -1 . . . scaffold61 WUBlastX DNA_Academ 165774 167135 395 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold1819 WUBlastX LTR_Gypsy-Cigr 48020 49522 669 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-BovB 309955 310356 256 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-BovB 310379 311047 502 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-BovB 311052 311459 317 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LTR_Gypsy 392395 394455 1014 - . . . . . -1 -1 -1 . . . scaffold40216 WUBlastX DNA_Academ 32261 33013 35 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Pao 288316 288621 183 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold544 WUBlastX LTR_DIRS 563682 564062 156 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold1634 WUBlastX LTR_Ngaro 84558 85061 87 - . . scaffold1634 GLEAN mRNA 82464 85496 0.992943 + . ID=CGI_10005152; scaffold1031 WUBlastX DNA_Kolobok-IS4 206913 207350 148 + . . scaffold1031 GLEAN mRNA 202896 208011 0.999658 - . ID=CGI_10019698; scaffold35988 WUBlastX DNA_Maverick 4431 4589 70 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_TcMar-Tc1 229586 230350 131 + . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_TcMar-Tc2 3878 4207 49 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 729197 729304 54 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L2 729301 729441 70 + . . . . . -1 -1 -1 . . . scaffold1867 WUBlastX LINE_CR1-L2 44908 45084 20 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 8075 8365 79 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Gypsy 8423 8662 31 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold286 WUBlastX DNA_TcMar-Tc1 434257 434424 66 - . . scaffold286 GLEAN mRNA 423114 437338 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 434257 434424 66 - . . scaffold286 GLEAN mRNA 433158 447481 0.525246 + . ID=CGI_10015974; scaffold102 WUBlastX LINE_RTE-BovB 984697 985278 131 + . . scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold516 WUBlastX LINE_RTE-BovB 8463 9062 103 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 423414 423974 36 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_L1-Tx1 336901 337482 29 - . . scaffold1409 GLEAN mRNA 329296 337932 0.994281 + . ID=CGI_10013793; scaffold1409 WUBlastX LINE_L1-Tx1 336901 337482 29 - . . scaffold1409 GLEAN mRNA 324495 351305 0.918932 - . ID=CGI_10013791; scaffold1209 WUBlastX RC_Helitron 11824 12354 70 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX DNA_Academ 242261 242881 299 - . . scaffold980 GLEAN mRNA 242201 242902 0.579788 - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 242879 243469 297 - . . scaffold980 GLEAN mRNA 242201 242902 0.579788 - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 243607 243993 270 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX DNA_Academ 243986 244426 184 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX DNA_Academ 244750 244962 46 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L2 1679935 1680192 93 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L2 1680231 1680446 77 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_L2 230958 231599 109 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L2 614767 614892 20 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Ngaro 328128 328538 91 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Ngaro 355515 356111 137 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Ngaro 225849 226097 85 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Ngaro 226266 226514 85 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Ngaro 25568 25816 85 + . . scaffold499 GLEAN mRNA 22718 44589 1 + . ID=CGI_10015760; scaffold1258 WUBlastX LTR_Gypsy 704941 705015 24 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_Penelope 130385 130849 165 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_RTE-X 30118 30786 61 + . . scaffold20 GLEAN mRNA 25974 32204 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX LINE_RTE-X 30118 30786 61 + . . scaffold20 GLEAN mRNA 28495 32289 0.880534 + . ID=CGI_10023557; scaffold1788 WUBlastX DNA_TcMar-Tc2 324570 324959 108 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX DNA_TcMar-Tc1 19481 19978 92 + . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LINE_L2 12535 13215 82 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Pao 103336 103467 43 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 54864 58178 888 - . . . . . -1 -1 -1 . . . scaffold382 WUBlastX DNA_Academ 25165 25596 108 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_Penelope 104798 105118 44 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX LINE_L1 128485 129000 126 + . . scaffold1754 GLEAN mRNA 124608 131066 0.788238 + . ID=CGI_10009580; scaffold280 WUBlastX LINE_RTE-X 383773 384225 55 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_RTE-BovB 143157 143375 160 + . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_Proto2 157775 158257 37 + . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX RC_Helitron 1175 1279 54 + . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX DNA_MuDR 37254 37517 40 + . . scaffold39240 GLEAN mRNA 34664 37858 0.999618 - . ID=CGI_10003247; scaffold128 WUBlastX LINE_RTE-X 122186 122311 82 + . . scaffold128 GLEAN mRNA 119795 124529 0.290216 - . ID=CGI_10021509; scaffold1730 WUBlastX LINE_RTE-X 215381 215524 77 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX DNA_TcMar-Tc2 40930 41754 196 + . . scaffold38552 GLEAN mRNA 40163 55847 0.999674 + . ID=CGI_10002839; scaffold867 WUBlastX LTR_Ngaro 615595 616227 122 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Gypsy 1203967 1204083 24 - . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_L1-Tx1 249390 249890 145 - . . . . . -1 -1 -1 . . . scaffold39960 WUBlastX LTR_Gypsy 21097 22677 473 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Gypsy 304146 304346 190 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold90 WUBlastX DNA_Maverick 167433 167642 37 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_CR1 172545 173048 145 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_CR1-L2 1070652 1070774 44 - . . . . . -1 -1 -1 . . . scaffold1721 WUBlastX DNA_Kolobok-IS4 1722 2111 77 + . . . . . -1 -1 -1 . . . scaffold39744 WUBlastX LINE_L1-Tx1 24609 25562 114 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LINE_Penelope 2086 2583 179 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_TcMar-Tc2 5466 5627 151 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-BovB 61181 61465 128 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LTR_Ngaro 85369 85695 141 - . . . . . -1 -1 -1 . . . C30322 WUBlastX LTR_Gypsy 1 1950 1522 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 612806 613051 24 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LINE_L2 46393 46533 22 + . . scaffold42530 GLEAN mRNA 44450 55395 0.966018 + . ID=CGI_10007161; scaffold1673 WUBlastX LTR_Ngaro 196762 196947 57 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LTR_Gypsy 149285 149353 23 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX DNA_Kolobok 12602 12733 24 + . . scaffold885 GLEAN mRNA 11627 19636 0.352613 - . ID=CGI_10025184; scaffold444 WUBlastX LINE_L1-Tx1 291666 295151 1141 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L2 615204 615635 153 - . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Ngaro 16161 16625 118 + . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Ngaro 16630 16704 59 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LINE_Penelope 99388 99972 101 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_RTE-X 442614 443393 131 - . . . . . -1 -1 -1 . . . C32542 WUBlastX LINE_RTE-X 11204 11743 169 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_L1-Tx1 705578 706153 30 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold37968 WUBlastX LTR_Pao 25547 26245 348 + . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LTR_Pao 26249 27172 860 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy-Cigr 475669 476406 231 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy-Cigr 478741 479520 469 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 73164 73613 286 + . . . . . -1 -1 -1 . . . scaffold1538 WUBlastX LTR_Gypsy 38621 41689 1394 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_CR1-L2 763001 763486 184 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 411519 411944 140 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LTR_DIRS? 159118 159753 203 - . . . . . -1 -1 -1 . . . C35532 WUBlastX LTR_Ngaro 15177 15908 178 - . . C35532 GLEAN mRNA 11931 21500 0.999947 - . ID=CGI_10001547; scaffold598 WUBlastX LTR_Ngaro 679 1170 188 + . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LTR_Gypsy-Cigr 12849 13145 49 + . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold42274 WUBlastX DNA_Harbinger 127827 127940 63 + . . . . . -1 -1 -1 . . . scaffold36362 WUBlastX DNA_Harbinger 32684 33076 197 + . . . . . -1 -1 -1 . . . C30084 WUBlastX LINE_Penelope 5088 5240 43 + . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LTR_Ngaro 173964 174635 108 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Ngaro 290297 290761 190 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold37292 WUBlastX DNA_TcMar-Tc1 34134 34424 72 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX LINE_L1 212520 212888 200 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Gypsy 1342356 1346699 1782 - . . . . . -1 -1 -1 . . . scaffold1814 WUBlastX LTR_Ngaro 79683 79766 56 - . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LTR_Gypsy 50110 50523 83 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold358 WUBlastX LINE_L1-Tx1 94751 95299 45 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_RTE-X 234276 234623 80 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 824347 824517 81 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 824509 824718 129 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 824723 824866 44 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 825379 825522 44 - . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX DNA_TcMar-Tc1 2039 2104 28 + . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Ngaro 177945 178448 87 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Gypsy 53776 53970 88 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold683 WUBlastX RC_Helitron 143029 143982 533 - . . . . . -1 -1 -1 . . . scaffold1514 WUBlastX LTR_Gypsy 119853 120557 198 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 103267 103950 293 + . . . . . -1 -1 -1 . . . scaffold1411 WUBlastX LTR_Gypsy 120572 124228 2001 + . . . . . -1 -1 -1 . . . scaffold1680 WUBlastX LTR_Gypsy 71324 73489 1396 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold38974 WUBlastX DNA_Kolobok 19548 19787 103 - . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 21300 21515 107 - . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold747 WUBlastX LINE_RTE-X 228658 229152 140 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_Sola 85289 85414 23 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LTR_Gypsy 116140 116994 290 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX RC_Helitron 1082770 1083354 328 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX RC_Helitron 1083889 1084404 208 + . . . . . -1 -1 -1 . . . C26626 WUBlastX LTR_Pao 2366 2560 22 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy 92520 92591 24 - . . . . . -1 -1 -1 . . . scaffold1873 WUBlastX LINE_L1-Tx1 64858 65385 198 + . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold867 WUBlastX LTR_Ngaro 613545 614069 126 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-X 210753 211091 58 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 629872 630780 296 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_L1-Tx1 383816 384184 67 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_IS4EU 17896 18600 282 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-BovB 1047026 1047253 102 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-BovB 1047250 1047570 236 + . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_L1-Tx1 144582 144818 47 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_CR1-L2 568809 569267 245 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold502 WUBlastX LINE_CR1-L2 139455 139649 59 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 215559 215729 57 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Ngaro 103642 103836 52 - . . . . . -1 -1 -1 . . . scaffold37436 WUBlastX LTR_DIRS 43327 44388 266 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX DNA_hAT 513958 515334 319 - . . scaffold305 GLEAN mRNA 513670 520927 0.837081 - . ID=CGI_10019146; scaffold39212 WUBlastX DNA_Sola 46061 46516 98 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold664 WUBlastX LTR_Ngaro 300120 300527 167 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LTR_Ngaro 967270 967527 105 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 967704 968060 172 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 968065 968241 60 - . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold1214 WUBlastX LINE_RTE-X 210732 211082 33 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 422408 422749 98 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 423676 423828 130 + . . . . . -1 -1 -1 . . . scaffold1394 WUBlastX LTR_Ngaro 43373 44140 328 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX DNA_Kolobok-IS4 149169 149921 322 - . . scaffold917 GLEAN mRNA 121193 151265 0.227919 + . ID=CGI_10011083; scaffold829 WUBlastX LINE_L1-Tx1 327645 328016 101 + . . . . . -1 -1 -1 . . . scaffold1375 WUBlastX LINE_L2 15296 16801 152 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX RC_Helitron 290095 290892 104 + . . . . . -1 -1 -1 . . . scaffold243 WUBlastX DNA_hAT-Tip100 44706 45227 140 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX DNA_Sola 237145 238476 242 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 257542 257751 116 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 208007 208267 28 - . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 375118 375810 247 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy-Cigr 52669 52749 25 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_L2 291198 291671 51 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_L2 291718 292302 261 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 462154 462261 36 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 317307 317489 104 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 317976 318296 173 - . . . . . -1 -1 -1 . . . scaffold41162 WUBlastX LTR_Gypsy 90045 90170 113 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold393 WUBlastX DNA_Harbinger 1056903 1057622 278 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX DNA_Harbinger 1057589 1057765 71 - . . scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold827 WUBlastX LINE_RTE-X 45663 47156 296 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L2 24096 24977 360 - . . . . . -1 -1 -1 . . . scaffold37816 WUBlastX LTR_Ngaro 30665 31363 118 + . . . . . -1 -1 -1 . . . scaffold37816 WUBlastX LTR_Ngaro 31808 32134 172 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_L1-Tx1 55351 55989 446 + . . . . . -1 -1 -1 . . . C22754 WUBlastX LINE_RTE-X 460 1452 370 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 635137 636183 395 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Ngaro 137499 137891 240 + . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 149292 149360 26 + . . . . . -1 -1 -1 . . . scaffold42164 WUBlastX LINE_L1-Tx1 146556 147584 415 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_En-Spm 289536 290192 499 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LTR_DIRS 946394 947362 505 + . . . . . -1 -1 -1 . . . C28168 WUBlastX LTR_DIRS 4084 5034 457 - . . . . . -1 -1 -1 . . . scaffold1793 WUBlastX DNA_TcMar-Tc1 23430 24461 414 - . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LTR_Gypsy 352610 352861 110 - . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy 51205 51375 35 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 792631 793050 94 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 793077 793634 91 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 794755 795033 104 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_Gypsy 452106 452531 215 + . . . . . -1 -1 -1 . . . scaffold43522 WUBlastX LINE_L1-Tx1 118141 118653 248 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_Maverick 182851 183243 252 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_Maverick 183575 183628 39 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_RTE-X 201622 201771 50 + . . scaffold1897 GLEAN mRNA 190471 249775 0.317357 - . ID=CGI_10020917; scaffold1772 WUBlastX LINE_RTE-X 361008 361817 250 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX DNA_TcMar-Tc1 294092 294652 250 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_L1-Tx1 50658 52097 207 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold43538 WUBlastX LTR_Gypsy 181508 181678 71 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 685381 685680 152 + . . . . . -1 -1 -1 . . . scaffold243 WUBlastX LINE_RTE-X 135612 135743 44 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LTR_Ngaro 108710 108934 53 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold1097 WUBlastX LINE_RTE-BovB 682060 682173 60 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LTR_Gypsy 863337 863507 37 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1791 WUBlastX LINE_RTE-X 45371 45871 113 + . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 66589 67680 342 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Gypsy 169692 170657 614 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 534423 535823 458 + . . . . . -1 -1 -1 . . . scaffold38196 WUBlastX LINE_RTE-X 27028 29157 431 + . . . . . -1 -1 -1 . . . scaffold1814 WUBlastX LINE_Penelope 55527 56618 556 + . . . . . -1 -1 -1 . . . C24520 WUBlastX LINE_Penelope 2 1402 516 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 394352 394447 28 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Ngaro 411302 411868 167 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX DNA_hAT-Tip100 63457 64725 499 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX DNA_hAT-Tip100 64733 65236 175 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 58396 58884 206 + . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LINE_RTE-X 191694 192062 174 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-BovB 229427 230023 119 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_RTE-X 46487 47047 22 + . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_Gypsy 95584 95835 127 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_L2 202638 203669 667 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_L2 203720 203941 48 + . . . . . -1 -1 -1 . . . scaffold1058 WUBlastX LTR_Gypsy 42247 42663 48 - . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX LTR_Ngaro 31268 31753 337 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 31738 31998 89 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold40794 WUBlastX LTR_Pao 70463 70747 211 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-X 423338 423889 209 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LTR_Ngaro 150130 150351 103 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 1058814 1060424 784 + . . scaffold1423 GLEAN mRNA 1057538 1060967 0.980388 + . ID=CGI_10025454; scaffold43538 WUBlastX DNA_hAT-Tip100 49527 51239 793 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Ngaro 265743 265925 78 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_TcMar-Fot1 249521 250480 575 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_TcMar-Fot1 250489 250791 140 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 428195 428581 121 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 429168 429533 200 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_RTE-X 43250 43741 92 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Sola 216072 216632 328 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 8232 8483 61 - . . . . . -1 -1 -1 . . . scaffold37794 WUBlastX DNA_hAT-Tip100 34665 34982 45 - . . scaffold37794 GLEAN mRNA 31174 37793 0.544852 + . ID=CGI_10002501; scaffold488 WUBlastX LTR_Pao 87013 87126 23 - . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX DNA_Chapaev 20731 21039 72 + . . . . . -1 -1 -1 . . . scaffold35072 WUBlastX LTR_Copia 16343 16435 20 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_L2 547179 547547 49 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_CR1-L2 124652 124897 76 + . . . . . -1 -1 -1 . . . scaffold1577 WUBlastX LINE_CR1 35820 35873 30 + . . . . . -1 -1 -1 . . . scaffold1052 WUBlastX LINE_L2 79658 80020 60 - . . scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold417 WUBlastX LTR_Gypsy 27247 27498 60 - . . . . . -1 -1 -1 . . . scaffold194 WUBlastX DNA_Crypton 260953 261225 48 - . . scaffold194 GLEAN mRNA 249396 274108 0.709931 + . ID=CGI_10011068; scaffold719 WUBlastX DNA_Crypton 24253 24597 28 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_L2 52682 52801 28 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_L2 53025 53186 29 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_L2 361332 361388 20 + . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LTR_DIRS? 344505 344780 74 + . . scaffold1037 GLEAN mRNA 341684 347440 0.722718 + . ID=CGI_10017464; scaffold42530 WUBlastX LTR_DIRS 110014 110103 25 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LINE_Jockey 485222 485278 20 - . . . . . -1 -1 -1 . . . C14744 WUBlastX LTR_Gypsy 99 263 61 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_hAT-Tip100 396842 397009 46 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold40492 WUBlastX DNA_IS4EU 38095 38463 65 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX DNA_IS4EU 607124 607513 75 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX DNA_IS4EU 231669 232058 75 + . . . . . -1 -1 -1 . . . scaffold36390 WUBlastX DNA_Kolobok-IS4 20239 20391 46 + . . . . . -1 -1 -1 . . . scaffold38186 WUBlastX DNA_IS4EU 748 1080 51 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 718758 719192 45 - . . scaffold1132 GLEAN mRNA 715893 721077 0.813716 - . ID=CGI_10023330; scaffold1525 WUBlastX LTR_Gypsy 274470 274610 37 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Gypsy 274652 274834 66 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_TcMar-Marin 402354 402479 56 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX DNA_TcMar-Marin 140537 140746 64 - . . . . . -1 -1 -1 . . . C32614 WUBlastX DNA_TcMar-Marin 1975 2250 21 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_L2 53005 53100 30 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold559 WUBlastX DNA_P 36254 36535 57 + . . scaffold559 GLEAN mRNA 36227 37772 1 + . ID=CGI_10003340; scaffold1316 WUBlastX DNA_P 152127 152342 31 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_P 574428 574643 31 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; C34110 WUBlastX DNA_P 11168 11380 44 + . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold322 WUBlastX DNA_P 207080 207460 45 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_MuDR 34632 35054 58 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok-Hyd 698928 699368 41 + . . scaffold86 GLEAN mRNA 698775 699680 0.946427 + . ID=CGI_10028168; scaffold1538 WUBlastX LINE_L1 5627 5806 22 + . . . . . -1 -1 -1 . . . scaffold41828 WUBlastX LINE_RTE-BovB 72112 72216 43 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-X 641471 642130 29 - . . scaffold672 GLEAN mRNA 640658 642373 0.629162 - . ID=CGI_10021055; scaffold500 WUBlastX LINE_RTE-X 68070 68366 33 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-X 250721 250897 41 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_PiggyBac 1335160 1335432 38 - . . scaffold1179 GLEAN mRNA 1333065 1336155 0.976862 - . ID=CGI_10027422; scaffold1639 WUBlastX DNA_Maverick 123984 124109 38 - . . scaffold1639 GLEAN mRNA 120498 127273 1 - . ID=CGI_10005443; scaffold1581 WUBlastX LINE_R2 15135 15242 22 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 562452 562577 66 - . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold481 WUBlastX DNA_TcMar-Tigge 212362 212706 62 + . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 58805 59140 40 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_L1-Tx1 66999 67145 24 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_Rex-Babar 285737 286102 43 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_L1 190570 190734 33 - . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX DNA_hAT-Tip100 27786 28199 70 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX DNA_Crypton 17538 17714 80 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_ERV1 168870 169070 88 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX LTR_Gypsy 56977 57255 35 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LTR_Gypsy 469884 470723 26 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX DNA_Harbinger 62650 62859 39 + . . scaffold39014 GLEAN mRNA 61763 62871 0.6936 + . ID=CGI_10003136; scaffold1036 WUBlastX DNA_Harbinger 226749 226949 71 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX DNA_IS4EU 231420 232034 27 + . . scaffold1359 GLEAN mRNA 231045 231436 1 - . ID=CGI_10013244; scaffold1359 WUBlastX DNA_IS4EU 232215 232349 28 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX DNA_IS4EU 529086 529271 69 - . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1080 WUBlastX DNA_IS4EU 219636 219812 64 + . . . . . -1 -1 -1 . . . C33368 WUBlastX DNA_Kolobok-Hyd 7390 7734 70 + . . C33368 GLEAN mRNA 2894 7917 0.564757 + . ID=CGI_10001057; scaffold198 WUBlastX LINE_Penelope 276189 276572 33 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Ngaro 88836 89093 64 - . . scaffold351 GLEAN mRNA 80647 91796 0.490582 - . ID=CGI_10022590; scaffold500 WUBlastX LTR_Ngaro 13019 13189 61 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX DNA_Maverick 301536 301739 73 - . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LINE_RTE-BovB 106902 107078 101 + . . scaffold585 GLEAN mRNA 91313 107443 0.999351 - . ID=CGI_10005541; scaffold38576 WUBlastX LINE_RTE-X 25307 25648 27 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 5078 5329 41 - . . . . . -1 -1 -1 . . . scaffold39778 WUBlastX LINE_RTE-X 62638 62955 73 - . . scaffold39778 GLEAN mRNA 56712 68685 0.806384 - . ID=CGI_10003612; scaffold378 WUBlastX LINE_RTE-BovB 351598 351774 76 + . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX LINE_RTE-BovB 41790 42020 80 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_L1-Tx1 411704 412003 61 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LINE_L1-Tx1 121273 121491 45 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Copia 2599 2709 23 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_CR1 33863 33916 27 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 856015 856155 70 - . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 81145 81378 92 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_IS4EU 9789 10529 83 - . . . . . -1 -1 -1 . . . scaffold94 WUBlastX DNA_Harbinger 71247 71540 44 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX RC_Helitron 186369 186608 62 - . . . . . -1 -1 -1 . . . C34116 WUBlastX LTR_Gypsy 3063 3236 48 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 348537 348602 22 + . . . . . -1 -1 -1 . . . scaffold37064 WUBlastX LINE_Jockey 1616 1981 22 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_Penelope 224070 224426 49 - . . scaffold563 GLEAN mRNA 221021 229296 0.703326 - . ID=CGI_10019825; scaffold1726 WUBlastX LINE_Penelope 234232 234549 53 + . . . . . -1 -1 -1 . . . scaffold258 WUBlastX LINE_L1-Tx1 428908 429357 48 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX LINE_L1-Tx1 227672 227959 94 + . . . . . -1 -1 -1 . . . scaffold41816 WUBlastX LINE_L1 88710 89267 75 - . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold40586 WUBlastX LINE_RTE-X 51309 51575 82 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 188076 188231 63 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold90 WUBlastX LTR_Gypsy 153879 154133 105 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_DIRS 164720 164914 68 + . . scaffold807 GLEAN mRNA 164808 174139 0.351868 + . ID=CGI_10011458; scaffold365 WUBlastX LTR_DIRS 418095 418733 81 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LTR_Gypsy-Cigr 49421 49681 85 + . . . . . -1 -1 -1 . . . scaffold43170 WUBlastX LINE_CR1 79666 80076 39 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L2 612685 612807 25 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold43878 WUBlastX LINE_L2 212449 212796 87 - . . . . . -1 -1 -1 . . . scaffold635 WUBlastX LTR_Gypsy 116393 116611 41 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold123 WUBlastX RC_Helitron 141241 142008 49 + . . . . . -1 -1 -1 . . . C24440 WUBlastX DNA_IS4EU 1178 1303 22 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_PiggyBac 726146 726229 58 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold1481 WUBlastX LINE_RTE-X 9832 9921 33 + . . . . . -1 -1 -1 . . . scaffold644 WUBlastX LINE_L1-Tx1 84904 85011 78 - . . . . . -1 -1 -1 . . . scaffold1760 WUBlastX LINE_L1-Tx1 35437 35811 72 + . . scaffold1760 GLEAN mRNA 10471 43998 0.994763 + . ID=CGI_10002757; scaffold556 WUBlastX LINE_L1-Tx1 194300 194506 49 + . . scaffold556 GLEAN mRNA 194019 202410 0.999351 - . ID=CGI_10016802; scaffold825 WUBlastX LINE_L1-Tx1 197046 197429 64 - . . scaffold825 GLEAN mRNA 194651 220674 0.998225 + . ID=CGI_10012712; scaffold1532 WUBlastX LINE_L2 1574646 1575146 66 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX DNA_TcMar-Tc1 50488 50646 29 - . . . . . -1 -1 -1 . . . scaffold1121 WUBlastX DNA_hAT-Tip100 140752 140997 94 - . . scaffold1121 GLEAN mRNA 136074 147948 0.722367 - . ID=CGI_10006507; scaffold1093 WUBlastX LTR_Pao 56143 56271 47 + . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LTR_Gypsy 259936 260127 61 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 436468 436680 23 - . . . . . -1 -1 -1 . . . C34630 WUBlastX DNA_Kolobok 16666 16773 32 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_RTE-X 469828 470277 42 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX DNA_TcMar-Tc1 207241 207567 52 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold38750 WUBlastX LINE_RTE-X 3957 4256 73 + . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold22 WUBlastX LINE_RTE-X 947653 947868 71 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 337702 337896 58 - . . . . . -1 -1 -1 . . . scaffold399 WUBlastX DNA_TcMar-Tc1 178449 178577 44 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_I 199793 200182 103 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_CR1-L2 403170 403754 39 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LTR_Gypsy-Cigr 273513 274226 82 - . . . . . -1 -1 -1 . . . scaffold532 WUBlastX LINE_L2 255916 256398 85 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX DNA_Kolobok 13765 14010 136 - . . scaffold885 GLEAN mRNA 11627 19636 0.352613 - . ID=CGI_10025184; scaffold1714 WUBlastX LINE_I 311581 311868 65 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold1077 WUBlastX LTR_ERV1 487295 487366 23 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Ngaro 337423 337827 119 - . . . . . -1 -1 -1 . . . scaffold30814 WUBlastX LINE_RTE-X 7682 7873 45 - . . scaffold30814 GLEAN mRNA 3529 8232 0.998023 - . ID=CGI_10000671; scaffold169 WUBlastX LINE_L1-Tx1 773196 773303 52 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_CR1-L2 241703 242056 88 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LTR_Ngaro 965113 965403 100 + . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold481 WUBlastX LTR_Ngaro 1180986 1181387 55 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_I 166891 167001 24 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LINE_Penelope 92600 93022 81 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX DNA_Merlin 312175 312441 98 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 80764 81462 30 - . . . . . -1 -1 -1 . . . C31846 WUBlastX LINE_L1-Tx1 256 693 98 - . . . . . -1 -1 -1 . . . scaffold35508 WUBlastX LINE_L1-Tx1 21820 22380 36 + . . . . . -1 -1 -1 . . . scaffold685 WUBlastX LINE_RTE-X 41464 41586 24 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Maverick 233681 234241 120 + . . . . . -1 -1 -1 . . . scaffold527 WUBlastX DNA_Maverick 267455 267694 100 - . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_RTE-X 85992 86513 66 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold1813 WUBlastX LINE_L1-Tx1 29636 29857 96 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_L1-Tx1 523747 524049 113 - . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold750 WUBlastX LINE_CR1-L2 34460 34756 121 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_IS4EU 17173 17280 37 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_IS4EU 18108 18167 36 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_IS4EU 18317 18502 73 + . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LINE_L1-Tx1 30737 31432 105 - . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_L1 102339 102671 42 - . . scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold36774 WUBlastX LINE_Proto2 25569 26171 65 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_Rex-Babar 612520 613239 45 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Maverick 1446708 1447088 107 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_DIRS 23210 23467 112 + . . scaffold62 GLEAN mRNA 11522 26854 1 - . ID=CGI_10015703; scaffold599 WUBlastX LINE_L1-Tx1 569370 569810 21 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Gypsy 322604 322777 39 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Gypsy 323358 323576 133 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_IS4EU 67913 68215 61 + . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold1054 WUBlastX DNA_Kolobok 334127 334291 33 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_TcMar-Tc1 217213 217275 30 - . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_RTE-X 236786 236956 40 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 638082 638684 43 - . . scaffold204 GLEAN mRNA 632848 639424 1 + . ID=CGI_10026121; scaffold413 WUBlastX LINE_CR1 773139 774071 94 + . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LTR_DIRS 265793 266188 29 + . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LTR_DIRS 266248 266433 26 + . . . . . -1 -1 -1 . . . scaffold1600 WUBlastX LTR_DIRS 184574 184669 22 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 184574 184669 22 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LTR_DIRS 185827 186168 55 + . . scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 185827 186168 55 + . . scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; C30570 WUBlastX LINE_L2 5645 6169 120 + . . . . . -1 -1 -1 . . . scaffold793 WUBlastX DNA_MuDR 63663 63794 53 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; C28620 WUBlastX LINE_L1-Tx1 2978 3718 62 - . . . . . -1 -1 -1 . . . C28620 WUBlastX LINE_L1-Tx1 3736 3954 58 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Maverick 328276 328719 93 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_RTE-X 164448 164570 41 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX RC_Helitron 5874 8036 239 + . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold189 WUBlastX LTR_Gypsy 537812 539020 973 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_CR1-L2 32667 33755 315 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_CR1 590990 591550 107 + . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_CR1 17070 17387 113 - . . . . . -1 -1 -1 . . . scaffold33980 WUBlastX DNA_hAT-Tip100 3548 3910 94 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold43836 WUBlastX LTR_DIRS 21616 21666 22 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX RC_Helitron 771802 772098 45 + . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX RC_Helitron 1703 1906 93 + . . . . . -1 -1 -1 . . . scaffold711 WUBlastX DNA_hAT-Ac 177324 178052 159 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX DNA_hAT-Ac 178406 179134 159 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_Harbinger 612218 612406 67 + . . scaffold602 GLEAN mRNA 583910 615175 0.1397 + . ID=CGI_10023196; scaffold42840 WUBlastX DNA_TcMar-Marin 185706 185801 45 - . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX DNA_TcMar-Marin 185845 185991 32 - . . scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold417 WUBlastX LINE_Proto2 31500 31868 24 - . . . . . -1 -1 -1 . . . scaffold42960 WUBlastX LTR_Gypsy-Cigr 202929 203273 153 + . . . . . -1 -1 -1 . . . scaffold31538 WUBlastX DNA_Maverick 6178 7914 252 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold31538 WUBlastX DNA_Maverick 4150 5217 556 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold31538 WUBlastX DNA_Maverick 5584 5862 136 - . . scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold1686 WUBlastX LTR_Gypsy-Cigr 26698 27033 52 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy 370632 373403 945 - . . . . . -1 -1 -1 . . . scaffold31388 WUBlastX DNA_Zator 4357 4668 113 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 5109 5339 82 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 5648 6169 207 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 6145 7962 645 - . . scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold1445 WUBlastX LTR_Gypsy 182054 182203 34 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 301452 301667 128 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1 719962 720900 32 - . . . . . -1 -1 -1 . . . scaffold42060 WUBlastX LINE_L1 73235 73687 164 + . . . . . -1 -1 -1 . . . scaffold35432 WUBlastX LINE_L1-Tx1 404 937 117 - . . . . . -1 -1 -1 . . . scaffold250 WUBlastX DNA_TcMar-Tc1 31324 31683 75 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LTR_Pao 68375 69259 715 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Pao 198218 199315 641 - . . . . . -1 -1 -1 . . . scaffold40420 WUBlastX LINE_CR1 41003 41650 93 + . . scaffold40420 GLEAN mRNA 36191 42467 1 - . ID=CGI_10004098; scaffold36716 WUBlastX LINE_L2 23965 24396 151 + . . . . . -1 -1 -1 . . . C26040 WUBlastX LINE_RTE-X 1971 2150 35 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 1120297 1120536 57 - . . scaffold77 GLEAN mRNA 1111468 1123998 0.545449 + . ID=CGI_10028021; scaffold39096 WUBlastX LTR_Gypsy 39199 39537 287 - . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_CR1 123060 123212 74 - . . . . . -1 -1 -1 . . . scaffold40282 WUBlastX LTR_Gypsy 74180 74785 240 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 75081 75707 447 - . . scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold867 WUBlastX LINE_L2 221822 222154 129 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_L2 50905 51471 36 - . . . . . -1 -1 -1 . . . scaffold532 WUBlastX LINE_L2 255898 256308 110 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Ngaro 316577 317398 48 + . . scaffold1301 GLEAN mRNA 311038 320027 0.984699 - . ID=CGI_10027714; scaffold42790 WUBlastX LINE_Penelope 186985 187620 100 - . . scaffold42790 GLEAN mRNA 181485 188091 0.999947 - . ID=CGI_10007719; scaffold40752 WUBlastX LINE_RTE-RTE 74265 74363 38 + . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX LINE_RTE-X 58930 59226 153 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy-Cigr 83135 83347 136 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold126 WUBlastX DNA_Maverick 528448 529518 235 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Maverick 530216 532186 782 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_En-Spm 91829 92503 99 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L2 263872 263973 22 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 178703 179125 168 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LINE_L1-Tx1 46494 46634 41 - . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX LINE_RTE-BovB 103758 104153 165 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX LTR_Gypsy 167421 169775 594 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy-Cigr 211643 212017 334 - . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LINE_L1-Tx1 14440 14775 146 - . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LINE_L1-Tx1 14753 16558 963 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 495186 495443 60 - . . . . . -1 -1 -1 . . . scaffold1763 WUBlastX LINE_RTE-X 539121 539339 55 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX DNA_Sola 20195 20569 182 + . . . . . -1 -1 -1 . . . scaffold1538 WUBlastX LTR_Gypsy 38310 38618 261 - . . . . . -1 -1 -1 . . . scaffold180 WUBlastX LTR_Gypsy 68841 71624 1530 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_CR1 16492 16926 437 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold630 WUBlastX LINE_L1 222966 223343 67 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 148543 149094 37 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 149058 149189 88 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_L1-Tx1 182688 183872 34 + . . . . . -1 -1 -1 . . . scaffold36526 WUBlastX LINE_L1-Tx1 21169 21438 52 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold488 WUBlastX LTR_Pao 85801 86595 114 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Harbinger 83321 83485 22 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Harbinger 84222 84344 51 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_L1 81029 81133 29 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LINE_Penelope 112393 113427 114 - . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_Penelope 370718 371377 160 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 151555 151674 44 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 151662 151901 73 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 152735 153286 82 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 84243 84380 69 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 84376 84696 166 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 85025 85477 474 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 85456 86556 924 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_CR1-L2 63997 64461 234 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LTR_DIRS 358706 358969 147 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX DNA_hAT-Tip100 269997 271205 155 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_Kolobok-IS4 367695 367946 69 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LTR_Gypsy 223177 223752 437 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy 721613 721984 88 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_Gypsy 728423 728794 88 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold457 WUBlastX LTR_Gypsy 231155 232279 547 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Gypsy 233482 234909 950 - . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 25760 26386 183 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX DNA_En-Spm 417322 418569 169 + . . scaffold63 GLEAN mRNA 418402 418698 0.634433 + . ID=CGI_10017282; scaffold63 WUBlastX DNA_En-Spm 417322 418569 169 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold376 WUBlastX LINE_RTE-X 539638 540171 139 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_RTE-X 375056 375832 185 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy-Cigr 454488 455750 912 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 92452 93051 159 - . . . . . -1 -1 -1 . . . C29450 WUBlastX LINE_Penelope 5782 6330 97 + . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX DNA_PiggyBac 12478 12960 150 - . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold490 WUBlastX DNA_TcMar-Fot1 115957 116517 255 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold43574 WUBlastX LINE_L2 245676 245729 21 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 282126 282344 64 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; C35760 WUBlastX LTR_Gypsy 22355 25183 1609 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 162818 162976 26 - . . . . . -1 -1 -1 . . . scaffold43396 WUBlastX LTR_Ngaro 235006 235293 137 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold968 WUBlastX LINE_CR1 119373 120161 201 + . . scaffold968 GLEAN mRNA 110087 120737 0.425641 + . ID=CGI_10006297; scaffold1357 WUBlastX LTR_Gypsy 5704 6369 246 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_Maverick 325326 326024 261 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold1737 WUBlastX LTR_DIRS 186563 187084 267 + . . . . . -1 -1 -1 . . . scaffold32230 WUBlastX LTR_Gypsy-Cigr 5199 5948 216 + . . . . . -1 -1 -1 . . . scaffold38048 WUBlastX DNA_TcMar-Tc1 33495 34211 257 + . . scaffold38048 GLEAN mRNA 5473 39952 0.557382 + . ID=CGI_10002589; scaffold38864 WUBlastX DNA_hAT-Tip100 39890 40033 29 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1-Tx1 308211 308345 56 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold71 WUBlastX LTR_Gypsy 208758 211658 2424 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy-Cigr 476372 476527 24 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy-Cigr 478117 478392 53 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX DNA_TcMar-Pogo 459475 460758 239 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LINE_Penelope 210109 210501 100 + . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold6 WUBlastX LINE_L1 265401 265544 39 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1 266896 267231 33 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_RTE-X 85358 85861 170 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX LINE_RTE-BovB 107835 108650 142 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; C26018 WUBlastX LINE_RTE-BovB 854 1669 142 - . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LTR_DIRS 5972 6553 232 + . . . . . -1 -1 -1 . . . scaffold42740 WUBlastX DNA_Harbinger 77045 77107 24 - . . scaffold42740 GLEAN mRNA 65305 90130 0.999494 + . ID=CGI_10007608; scaffold42740 WUBlastX DNA_Harbinger 77045 77107 24 - . . scaffold42740 GLEAN mRNA 75816 93610 0.249736 - . ID=CGI_10007609; scaffold1806 WUBlastX RC_Helitron 144058 144783 286 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Maverick 327560 328099 268 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 211183 211260 39 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 140615 141433 263 + . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX LINE_L1-Tx1 19774 19947 44 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold36202 WUBlastX LTR_Gypsy 28607 28702 44 - . . . . . -1 -1 -1 . . . scaffold36202 WUBlastX LTR_Gypsy 28725 28976 114 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1-Tx1 195805 196014 30 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-X 408702 409379 99 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-X 409517 409804 110 + . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX DNA_Kolobok 49554 50018 213 + . . . . . -1 -1 -1 . . . scaffold1901 WUBlastX LINE_R2-Hero 351170 352087 316 - . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_Ngaro 54149 54223 50 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_L1-Tx1 63248 63796 119 - . . scaffold42656 GLEAN mRNA 57925 65294 1 - . ID=CGI_10007413; scaffold42656 WUBlastX LINE_L1-Tx1 63780 63860 25 - . . scaffold42656 GLEAN mRNA 57925 65294 1 - . ID=CGI_10007413; scaffold1160 WUBlastX LTR_Gypsy 222870 223232 36 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_IS4EU 50000 50152 72 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Gypsy 499774 499980 29 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_CR1-L2 205703 205906 31 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1-L2 206409 206852 203 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold42124 WUBlastX LTR_Ngaro 22664 23500 348 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_IS4EU 465379 466440 394 - . . scaffold599 GLEAN mRNA 453980 472237 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 465379 466440 394 - . . scaffold599 GLEAN mRNA 456252 477114 0.953927 + . ID=CGI_10021726; scaffold599 WUBlastX DNA_IS4EU 467549 468610 394 - . . scaffold599 GLEAN mRNA 453980 472237 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 467549 468610 394 - . . scaffold599 GLEAN mRNA 456252 477114 0.953927 + . ID=CGI_10021726; scaffold1199 WUBlastX DNA_MuDR 114186 115538 354 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 1305488 1305613 34 + . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX DNA_IS4EU 248 1261 364 - . . scaffold38678 GLEAN mRNA 233 1096 1 - . ID=CGI_10002904; scaffold501 WUBlastX LTR_Gypsy 725199 726368 463 + . . scaffold501 GLEAN mRNA 690007 761178 0.748134 - . ID=CGI_10027530; scaffold1026 WUBlastX LINE_Penelope 60981 61511 97 + . . . . . -1 -1 -1 . . . scaffold1026 WUBlastX LINE_Penelope 61499 62002 308 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_TcMar-m44 23911 24126 79 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_TcMar-m44 24110 24796 366 - . . . . . -1 -1 -1 . . . scaffold580 WUBlastX LINE_Penelope 2659 3537 402 - . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy 47615 47665 22 + . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX LINE_L1-Tx1 275719 276426 213 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold40186 WUBlastX DNA_TcMar-Tc1 24493 24948 240 - . . scaffold40186 GLEAN mRNA 18331 26539 0.486093 - . ID=CGI_10003927; scaffold40186 WUBlastX DNA_TcMar-Tc1 24891 25229 122 - . . scaffold40186 GLEAN mRNA 18331 26539 0.486093 - . ID=CGI_10003927; scaffold329 WUBlastX DNA_hAT-Tip100 80885 81028 114 - . . . . . -1 -1 -1 . . . scaffold39352 WUBlastX LINE_L2-Hydra 59135 59917 90 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Pao 103177 103497 29 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LTR_DIRS? 206947 207618 407 + . . . . . -1 -1 -1 . . . scaffold38736 WUBlastX DNA_Harbinger 51746 52009 195 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-BovB 1145394 1145786 198 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_DIRS 255706 256440 269 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_DIRS 256488 256652 136 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_Gypsy 674445 674876 51 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_DIRS 138376 138630 74 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1073439 1073567 64 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074496 1074633 81 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; C28800 WUBlastX LTR_Pao 22 1191 492 + . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 462517 463092 106 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok 376811 377059 88 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok 377543 377812 75 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok 377971 378159 99 - . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1 54191 54637 43 + . . . . . -1 -1 -1 . . . scaffold36334 WUBlastX LINE_RTE-X 11175 11669 64 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 350895 352694 406 + . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy 65734 66630 208 - . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy 66599 67039 398 - . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_L2 125505 125786 70 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_L1-Tx1 58684 59520 518 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX DNA_Zator 177583 177741 20 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX DNA_Zator 177899 178114 54 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX DNA_Zator 178641 179591 482 - . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_IS4EU 225918 226475 234 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_IS4EU 226667 226840 98 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_IS4EU 227371 228036 227 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX DNA_Maverick 100088 100648 350 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX DNA_TcMar-Tc2 272868 273656 324 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX DNA_TcMar-Tc2 273620 273934 143 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 543697 543852 46 - . . . . . -1 -1 -1 . . . scaffold42618 WUBlastX LTR_Gypsy 94309 94569 170 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1 403449 403592 72 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold312 WUBlastX DNA_Maverick 41086 41802 469 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_En-Spm 150840 151853 565 - . . . . . -1 -1 -1 . . . scaffold366 WUBlastX DNA_Harbinger 106924 107355 193 + . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold1646 WUBlastX LTR_Gypsy-Cigr 155926 156135 112 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_Harbinger 326750 327052 244 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_Harbinger 327034 327687 397 - . . . . . -1 -1 -1 . . . scaffold386 WUBlastX DNA_Kolobok-IS4 214396 215523 534 - . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold386 WUBlastX DNA_Kolobok-IS4 216253 216513 54 - . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold914 WUBlastX LTR_Ngaro 364215 364529 149 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX LTR_Ngaro 364573 365733 444 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L1-Tx1 546110 546508 64 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1-Tx1 158591 158953 66 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1 158675 158953 96 + . . . . . -1 -1 -1 . . . scaffold31756 WUBlastX LINE_Penelope 5939 6478 230 + . . . . . -1 -1 -1 . . . scaffold31756 WUBlastX LINE_Penelope 6462 7466 400 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_Maverick 9117 9602 300 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX DNA_Sola 361213 363072 571 - . . scaffold1160 GLEAN mRNA 346241 390372 0.989896 + . ID=CGI_10015360; scaffold911 WUBlastX LINE_RTE-X 308308 308856 121 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_RTE-X 309889 310596 108 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_L1-Tx1 246916 248175 657 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L1-Tx1 799923 800648 169 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L1-Tx1 800689 801549 378 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LINE_L1-Tx1 60943 61200 70 - . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_RTE-X 125818 126459 350 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_RTE-X 126422 126712 114 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_RTE-X 126669 127493 161 + . . scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold1083 WUBlastX LINE_RTE-X 378886 379548 271 - . . . . . -1 -1 -1 . . . scaffold34224 WUBlastX LTR_Ngaro 12020 12409 240 - . . . . . -1 -1 -1 . . . scaffold34224 WUBlastX LTR_Ngaro 12409 13008 359 - . . . . . -1 -1 -1 . . . scaffold42046 WUBlastX LINE_L1-Tx1 57960 59843 592 + . . scaffold42046 GLEAN mRNA 51319 68145 1 + . ID=CGI_10006002; scaffold619 WUBlastX DNA_hAT-hATw 621597 624350 689 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX LTR_DIRS 7905 8384 86 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX LTR_DIRS 8563 8994 39 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX LTR_DIRS 9026 9676 286 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX LTR_DIRS 9631 10188 138 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX LTR_DIRS 10199 10633 187 + . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX LINE_L1-Tx1 16890 17261 88 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold94 WUBlastX LTR_Gypsy 65314 65772 200 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; C27146 WUBlastX LTR_Copia 31 117 51 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LINE_L2 253981 254106 53 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_L2 721739 721972 49 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold37532 WUBlastX LINE_L2 44071 44307 66 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_CR1-L2 26207 26290 25 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_CR1-L2 337784 337867 25 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1174 WUBlastX LINE_L2 888565 888915 46 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_L2 262217 262480 31 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_DIRS 1062647 1063267 26 - . . scaffold1532 GLEAN mRNA 1062422 1062688 0.73346 - . ID=CGI_10028279; scaffold1397 WUBlastX LTR_Gypsy 34822 35010 31 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 249944 250090 54 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LTR_Gypsy-Cigr 49411 49611 74 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 215204 215695 62 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LTR_Gypsy 63540 63686 42 + . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LTR_Gypsy 62338 62490 74 - . . . . . -1 -1 -1 . . . scaffold770 WUBlastX LTR_Gypsy 147413 147769 80 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX DNA_hAT-hATw 526000 526482 25 + . . scaffold1897 GLEAN mRNA 525712 527331 0.995373 + . ID=CGI_10020936; scaffold1589 WUBlastX DNA_IS4EU 270506 270769 37 + . . . . . -1 -1 -1 . . . scaffold35926 WUBlastX LINE_L1 24245 24508 66 - . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_L1 134143 134340 25 - . . . . . -1 -1 -1 . . . scaffold771 WUBlastX LINE_L1-Tx1 222846 222908 29 + . . . . . -1 -1 -1 . . . scaffold793 WUBlastX LINE_Penelope 71568 71693 51 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold801 WUBlastX DNA_P 564009 564167 65 - . . . . . -1 -1 -1 . . . scaffold37378 WUBlastX DNA 28214 28462 34 + . . . . . -1 -1 -1 . . . scaffold148 WUBlastX LINE_L2 41554 41643 20 + . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX DNA_TcMar-Marin 104517 104654 61 - . . scaffold1245 GLEAN mRNA 102403 119670 0.989696 - . ID=CGI_10009226; scaffold39712 WUBlastX LINE_RTE-X 27198 27434 51 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_RTE-X 27199 27258 21 + . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_RTE-X 42789 42965 54 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_R2 589719 589853 20 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Gypsy 472084 472680 37 - . . scaffold730 GLEAN mRNA 471418 473037 0.61701 - . ID=CGI_10019905; scaffold1030 WUBlastX LTR_Lenti 40977 41165 31 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 25923 26180 74 - . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold39212 WUBlastX DNA_hAT-Tip100 56519 56752 37 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold983 WUBlastX LINE_Jockey 170491 170793 65 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_TcMar-Tc1 204536 204760 28 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold973 WUBlastX LTR_Copia 340741 341016 28 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LTR_Gypsy 69230 69556 103 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_L2 413535 413702 61 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Gypsy 255404 255739 35 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 88510 88596 20 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX DNA_TcMar-Marin 566682 566858 38 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_L2 648177 648224 21 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold1352 WUBlastX DNA_TcMar-Marin 427051 427251 31 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX DNA_NOF? 369405 369626 29 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX DNA_NOF? 369751 369885 21 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LINE_Penelope 102875 103156 47 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L1-Tx1 547748 547969 27 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold1164 WUBlastX LINE_L1 309378 309803 23 - . . scaffold1164 GLEAN mRNA 307222 312085 0.957199 - . ID=CGI_10013011; scaffold1399 WUBlastX LINE_L1 33929 34096 31 - . . scaffold1399 GLEAN mRNA 16276 39140 0.996608 + . ID=CGI_10007047; scaffold1352 WUBlastX LINE_L1 136433 136909 21 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_Kolobok 7822 8061 62 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_RTE-BovB 218874 219137 39 - . . . . . -1 -1 -1 . . . C5335 WUBlastX LINE_RTE-X 1 123 74 + . . . . . -1 -1 -1 . . . scaffold43278 WUBlastX LINE_RTE-X 116797 116985 55 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 399101 399172 21 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_RTE-X 164196 164255 21 - . . . . . -1 -1 -1 . . . C32444 WUBlastX DNA_Sola 6586 6924 73 + . . C32444 GLEAN mRNA 2136 9566 0.999221 + . ID=CGI_10000894; scaffold610 WUBlastX LINE_L1-Tx1 294997 295464 24 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_L1-Tx1 399909 400019 55 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_L1-Tx1 400121 400549 20 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold189 WUBlastX LINE_L1-Tx1 2236 2529 30 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Pao 203988 204026 26 - . . . . . -1 -1 -1 . . . scaffold33618 WUBlastX LINE_L2 11256 11525 75 - . . . . . -1 -1 -1 . . . scaffold42788 WUBlastX LINE_CR1-L2 26127 26471 21 - . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold425 WUBlastX LINE_L2 483450 483515 20 + . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LTR_Gypsy 89851 90084 48 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LTR_Gypsy 276451 276657 55 - . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LTR_Gypsy 72415 72450 24 + . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy-Cigr 29904 30389 57 + . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_I 119628 120638 27 + . . scaffold968 GLEAN mRNA 110087 120737 0.425641 + . ID=CGI_10006297; scaffold99 WUBlastX DNA_MuDR 241023 241421 62 + . . scaffold99 GLEAN mRNA 235492 241625 0.649382 + . ID=CGI_10021195; scaffold1836 WUBlastX LINE_RTE-X 67283 67603 49 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_TcMar-Marin 57481 57621 48 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_TcMar-Tc1 391465 391905 23 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold102 WUBlastX DNA_TcMar-Tc1 778388 778672 81 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Pao 419100 419315 112 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 173580 174047 67 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX RC_Helitron 194725 195210 65 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 586169 586243 46 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 586234 586599 71 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1189 WUBlastX LINE_L1-Tx1 712020 712163 30 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_L1-Tx1 212287 212484 79 + . . scaffold1037 GLEAN mRNA 210599 214513 0.72876 + . ID=CGI_10017456; scaffold1805 WUBlastX LINE_L1-Tx1 165591 165941 53 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 395428 395637 59 - . . . . . -1 -1 -1 . . . scaffold37092 WUBlastX DNA_Maverick 7513 7713 50 + . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy 38648 38788 115 + . . scaffold78 GLEAN mRNA 33688 45299 0.504298 + . ID=CGI_10006914; scaffold557 WUBlastX LINE_L1-Tx1 68165 68524 49 - . . scaffold557 GLEAN mRNA 47116 83012 0.949718 - . ID=CGI_10017966; scaffold88 WUBlastX DNA_hAT-Tip100 5650 5964 53 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold1017 WUBlastX LTR_Pao 538845 538973 78 + . . scaffold1017 GLEAN mRNA 538869 545118 1 + . ID=CGI_10025015; scaffold1017 WUBlastX LTR_Pao 539864 539989 55 + . . scaffold1017 GLEAN mRNA 538869 545118 1 + . ID=CGI_10025015; scaffold404 WUBlastX DNA_IS4EU 306966 307136 47 - . . . . . -1 -1 -1 . . . C34562 WUBlastX DNA_IS4EU 7305 7736 75 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Harbinger 241481 241750 90 + . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 49545 49820 120 - . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_Gypsy 33216 33560 89 + . . . . . -1 -1 -1 . . . scaffold38654 WUBlastX LINE_Penelope 35786 36031 97 + . . . . . -1 -1 -1 . . . scaffold1537 WUBlastX LINE_Penelope 8581 8853 78 + . . scaffold1537 GLEAN mRNA 2 9370 0.999999 + . ID=CGI_10001150; scaffold1831 WUBlastX LINE_RTE-BovB 1413 1616 58 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1865 WUBlastX LINE_RTE-X 261557 261985 45 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX DNA_Sola 424635 425015 58 + . . scaffold1093 GLEAN mRNA 421292 452469 0.981582 + . ID=CGI_10019808; scaffold85 WUBlastX LINE_L1-Tx1 153504 153728 45 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_L1-Tx1 153704 153883 67 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 795697 795867 31 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LINE_L2 305268 305717 115 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L2 403903 404178 76 + . . scaffold1017 GLEAN mRNA 402282 420963 0.940982 - . ID=CGI_10025006; scaffold1014 WUBlastX LINE_L2 30901 31167 47 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Gypsy 142426 142716 94 + . . scaffold453 GLEAN mRNA 138101 157244 0.160604 + . ID=CGI_10015041; scaffold42890 WUBlastX LINE_L1 200233 200460 100 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LINE_RTE-X 184859 185146 76 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LINE_RTE-BovB 62586 62846 105 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_PiggyBac 380215 380397 68 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_PiggyBac 381381 381779 23 - . . . . . -1 -1 -1 . . . scaffold723 WUBlastX DNA_Sola 80166 80459 66 + . . scaffold723 GLEAN mRNA 67351 82227 0.542233 + . ID=CGI_10015256; scaffold723 WUBlastX DNA_Sola 80468 80626 54 + . . scaffold723 GLEAN mRNA 67351 82227 0.542233 + . ID=CGI_10015256; scaffold1698 WUBlastX DNA_Sola 337589 337852 43 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_CR1 154836 155327 30 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; C31724 WUBlastX LTR_Gypsy 1908 2000 26 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_hAT-Tip100 870659 870973 131 - . . . . . -1 -1 -1 . . . C26206 WUBlastX LTR_Gypsy 28 249 152 - . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LTR_Ngaro 83589 83912 121 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Gypsy 312853 313641 76 + . . scaffold1800 GLEAN mRNA 309587 323793 0.999996 + . ID=CGI_10016406; scaffold42648 WUBlastX DNA_Maverick 155740 155880 35 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 224650 224889 87 + . . scaffold631 GLEAN mRNA 219246 234334 0.970776 - . ID=CGI_10014178; scaffold780 WUBlastX LINE_RTE-X 229487 229879 33 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232255 232647 33 + . . scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold1166 WUBlastX DNA_TcMar-Tc1 135469 136083 108 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Copia 28616 28711 21 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 102138 102866 123 + . . scaffold759 GLEAN mRNA 101001 103047 0.957564 + . ID=CGI_10010775; scaffold721 WUBlastX DNA_Harbinger 38214 38390 50 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_I 48237 48638 85 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold1009 WUBlastX DNA_IS4EU 433548 433742 76 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_IS4EU 434395 434643 38 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX DNA_hAT 40826 40987 97 + . . . . . -1 -1 -1 . . . C14790 WUBlastX LINE_Penelope 50 268 86 + . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_Penelope 172400 172933 69 - . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX LINE_RTE-X 140247 140825 68 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LTR_Gypsy 46810 47103 154 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 737691 738485 144 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_RTE-X 794640 795266 40 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 497367 497669 22 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold113 WUBlastX LINE_RTE-X 477708 478199 56 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Ngaro 246483 246752 120 + . . . . . -1 -1 -1 . . . scaffold1474 WUBlastX LTR_Ngaro 9112 9486 126 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 106796 107431 150 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX DNA_hAT-Tip100 99350 99412 21 - . . . . . -1 -1 -1 . . . scaffold36674 WUBlastX LINE_L1-Tx1 29991 30416 160 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 7774 8031 58 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 88975 89403 63 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1-Tx1 119006 119389 23 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Ngaro 19369 19587 24 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Ngaro 19575 19766 120 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 47675 48592 52 + . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_L1-Tx1 137782 137958 50 - . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LINE_RTE-X 139815 139979 93 - . . scaffold560 GLEAN mRNA 134675 160538 0.941337 + . ID=CGI_10008753; scaffold1347 WUBlastX LINE_RTE-X 141609 141809 88 + . . scaffold1347 GLEAN mRNA 133564 144148 0.49238 + . ID=CGI_10012974; scaffold40624 WUBlastX LINE_L1-Tx1 10633 11100 97 + . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_L1-Tx1 11657 11890 37 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_RTE-BovB 111852 112757 827 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_RTE-BovB 112718 112990 227 + . . . . . -1 -1 -1 . . . scaffold40836 WUBlastX LINE_RTE-X 83992 84363 115 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 85309 86283 418 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold41034 WUBlastX LTR_DIRS 58658 58822 24 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold425 WUBlastX LTR_Gypsy 525543 526010 110 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Harbinger 114842 115054 28 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-X 216207 216812 24 - . . scaffold1710 GLEAN mRNA 213328 218333 1 - . ID=CGI_10022347; scaffold1860 WUBlastX LINE_L1-Tx1 97743 98312 73 - . . scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold364 WUBlastX LINE_L1-Tx1 705923 706621 141 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_TcMar-Tc1 440729 441148 160 - . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold448 WUBlastX LTR_DIRS 994184 995764 1099 - . . . . . -1 -1 -1 . . . scaffold1039 WUBlastX LINE_CR1 10528 12153 512 - . . . . . -1 -1 -1 . . . scaffold1039 WUBlastX LINE_CR1 12197 12463 75 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 715408 716163 255 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_CR1-L2 5636 7291 522 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 11467 11577 29 + . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX DNA_Harbinger 147396 147530 22 + . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX DNA_Harbinger 148150 148350 152 + . . . . . -1 -1 -1 . . . C31572 WUBlastX LINE_RTE-X 7602 8051 122 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_Harbinger 179010 179204 101 - . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LTR_DIRS 151403 152032 132 + . . scaffold1868 GLEAN mRNA 151292 152095 1 + . ID=CGI_10007984; scaffold1868 WUBlastX LTR_DIRS 152157 154079 966 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX RC_Helitron 12867 13043 25 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 545267 545380 58 + . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 99760 100047 21 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX DNA_hAT-Tip100 67514 67672 32 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 369364 369657 181 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Harbinger 56129 56221 35 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold308 WUBlastX LINE_RTE-X 111736 112158 46 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 1689641 1690174 71 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_PiggyBac 968166 968381 126 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 357128 357280 58 - . . . . . -1 -1 -1 . . . scaffold60 WUBlastX DNA_Academ 97010 97387 169 - . . scaffold60 GLEAN mRNA 96932 97333 0.999661 - . ID=CGI_10004686; scaffold40420 WUBlastX LINE_CR1 41003 41326 149 + . . scaffold40420 GLEAN mRNA 36191 42467 1 - . ID=CGI_10004098; scaffold1574 WUBlastX LTR_Gypsy 452807 453163 39 + . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1605 WUBlastX LINE_L1 455736 455825 22 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LTR_Ngaro 94521 94874 126 + . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LTR_Ngaro 95255 95371 66 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 34247 34537 68 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_RTE-X 267276 267833 120 - . . scaffold730 GLEAN mRNA 262816 271880 0.998589 - . ID=CGI_10019892; scaffold730 WUBlastX LINE_RTE-X 267814 267912 23 - . . scaffold730 GLEAN mRNA 262816 271880 0.998589 - . ID=CGI_10019892; scaffold22 WUBlastX DNA_TcMar-Tc1 615824 616303 148 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX DNA_TcMar-Tc1 695042 695281 39 - . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LINE_L1-Tx1 58960 59598 133 + . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_CR1 263416 265248 1324 + . . scaffold410 GLEAN mRNA 261101 270903 0.399222 + . ID=CGI_10020632; scaffold841 WUBlastX DNA_IS4EU 25723 26454 158 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 799473 799541 23 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LTR_Gypsy-Troyk 817889 818542 110 - . . scaffold334 GLEAN mRNA 818405 818653 0.645784 - . ID=CGI_10025963; scaffold1077 WUBlastX LTR_Pao 195530 196135 162 - . . . . . -1 -1 -1 . . . C28090 WUBlastX LINE_L2 514 1101 172 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 19594 20163 60 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 1310896 1311588 156 - . . . . . -1 -1 -1 . . . scaffold21998 WUBlastX DNA_TcMar-Tc1 74 820 198 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX DNA_TcMar-Tc1 457650 458480 145 - . . . . . -1 -1 -1 . . . C31846 WUBlastX LINE_L1-Tx1 259 627 163 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX LTR_Gypsy 97906 98229 284 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 205106 205159 23 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_I 265459 265881 54 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_IS4EU 226646 226777 60 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_IS4EU 214501 214605 24 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_Maverick 1261584 1261646 28 + . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold1868 WUBlastX LINE_RTE-X 168900 169007 44 + . . scaffold1868 GLEAN mRNA 166977 179463 0.984982 - . ID=CGI_10007985; scaffold1868 WUBlastX LINE_RTE-X 169015 169434 38 + . . scaffold1868 GLEAN mRNA 166977 179463 0.984982 - . ID=CGI_10007985; scaffold43024 WUBlastX LINE_RTE-X 30364 30669 114 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_TcMar-Tc1 407660 408103 29 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_TcMar-Tigge 64054 64215 40 + . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX LTR_Ngaro 2667 2810 56 + . . . . . -1 -1 -1 . . . scaffold42364 WUBlastX LINE_L1 106200 106694 132 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L1 71509 72003 132 - . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_L1 185363 185794 236 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 335551 335883 193 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_CR1 236795 238918 1260 + . . scaffold142 GLEAN mRNA 226750 254431 0.969071 + . ID=CGI_10026760; scaffold866 WUBlastX LTR_DIRS 17983 18030 20 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX DNA_TcMar-Tc1 72451 72615 71 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX DNA_TcMar-Tc1 72917 73099 38 - . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 27982 30000 997 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX LTR_Gypsy 30483 31790 584 + . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LTR_Pao 255278 257161 1131 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Gypsy-Cigr 56029 57921 974 + . . . . . -1 -1 -1 . . . scaffold37844 WUBlastX LINE_CR1 27814 28329 223 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Gypsy 291116 291325 24 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX LINE_L1 97466 97864 90 + . . . . . -1 -1 -1 . . . scaffold40856 WUBlastX LINE_RTE-X 84720 84926 101 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_P 561237 561362 60 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_P 562380 562526 47 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_P 562747 562905 80 - . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 516994 517188 32 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Ngaro 517410 517679 100 + . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LINE_RTE-BovB 107553 107636 23 + . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_L2-Hydra 204855 205238 46 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LTR_DIRS 69274 69708 160 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX DNA_Harbinger 338898 339041 55 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_L2 752936 754210 152 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_DIRS 105549 105995 170 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_Penelope 254896 255222 153 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LINE_L1 29655 29849 128 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_TcMar-Tc1 20087 20809 101 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Maverick 158266 158601 188 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Maverick 158700 161474 1827 - . . . . . -1 -1 -1 . . . scaffold1133 WUBlastX DNA_Kolobok-IS4 33765 34304 60 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_Kolobok-IS4 217366 217557 85 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_Kolobok-IS4 217776 217925 106 - . . . . . -1 -1 -1 . . . C27538 WUBlastX LINE_L1-Tx1 3575 4780 71 - . . . . . -1 -1 -1 . . . C33730 WUBlastX LTR_Pao 6270 6980 55 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LINE_R2-Hero 107752 108360 270 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 608446 608739 210 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 330259 330618 40 - . . . . . -1 -1 -1 . . . scaffold309 WUBlastX LTR_Gypsy 132648 136223 2416 + . . . . . -1 -1 -1 . . . scaffold1203 WUBlastX LINE_CR1-L2 161702 162028 144 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LTR_Gypsy 98973 101873 2010 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LTR_Gypsy 101867 102895 667 + . . . . . -1 -1 -1 . . . scaffold1886 WUBlastX LINE_CR1 143407 145083 196 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Foamy 108671 108778 24 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_Harbinger 616231 616449 43 - . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold807 WUBlastX LINE_Rex-Babar 179588 180874 33 - . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LTR_DIRS 32625 32924 99 + . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LTR_DIRS 33759 34238 182 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 437766 437882 35 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 736059 736286 81 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_Zator 364590 364973 77 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_Zator 365039 366205 239 - . . . . . -1 -1 -1 . . . scaffold42740 WUBlastX DNA_IS4EU 7871 8527 318 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_Maverick 408192 408458 126 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_Maverick 408449 408934 240 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 68869 69060 60 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L1-Tx1 865446 866324 282 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LINE_L1-Tx1 461399 462157 90 + . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LINE_L1-Tx1 462790 463257 137 + . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX LINE_CR1-L2 459385 460110 155 + . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LINE_L1-Tx1 17989 18255 69 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold39364 WUBlastX LTR_Gypsy 59704 60189 65 + . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L1 4707 4940 116 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold664 WUBlastX LINE_L1 204223 204384 40 - . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_Kolobok 113524 113847 57 + . . . . . -1 -1 -1 . . . scaffold39334 WUBlastX DNA_TcMar-Tc1 20412 21134 165 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_RTE-X 403200 403373 45 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold594 WUBlastX LTR_DIRS 159118 159567 243 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LTR_DIRS 159761 160033 96 - . . . . . -1 -1 -1 . . . C22978 WUBlastX LINE_L1-Tx1 501 2015 203 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_IS4EU 254480 255004 113 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 526055 526750 254 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Ngaro 266271 266813 228 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-X 869137 869514 129 - . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_RTE-BovB 238005 238469 193 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_RTE-BovB 238462 238923 281 + . . . . . -1 -1 -1 . . . C26128 WUBlastX LINE_R2 1316 1708 244 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX DNA_TcMar-Pogo 177499 177894 282 - . . . . . -1 -1 -1 . . . scaffold1676 WUBlastX DNA_TcMar-Tc1 11206 12102 477 - . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LTR_Ngaro 18087 18989 424 + . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX DNA_Merlin 60144 61016 405 - . . . . . -1 -1 -1 . . . scaffold868 WUBlastX DNA_Merlin 28524 29396 405 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_L1-Tx1 528035 529153 426 + . . scaffold160 GLEAN mRNA 523738 543493 0.85871 - . ID=CGI_10020606; scaffold1817 WUBlastX LTR_Ngaro 88292 88603 171 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Ngaro 88602 89162 279 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_DIRS 138430 138627 90 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_DIRS 138629 139327 364 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L1 136772 137320 140 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 567354 567623 115 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_L2 390733 391242 150 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold38010 WUBlastX LINE_RTE-X 34839 35072 59 - . . . . . -1 -1 -1 . . . scaffold133 WUBlastX DNA_TcMar-Tc1 8740 9357 131 + . . . . . -1 -1 -1 . . . scaffold133 WUBlastX DNA_TcMar-Tc1 9276 9755 267 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 509941 510276 23 + . . . . . -1 -1 -1 . . . scaffold33618 WUBlastX LTR_DIRS 3909 4235 133 + . . . . . -1 -1 -1 . . . scaffold1893 WUBlastX DNA_IS4EU 200591 201550 483 + . . scaffold1893 GLEAN mRNA 199713 203993 0.999824 + . ID=CGI_10008861; scaffold100 WUBlastX LTR_Gypsy 955341 955580 192 + . . . . . -1 -1 -1 . . . scaffold39222 WUBlastX LINE_L1-Tx1 5 793 550 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 476696 477766 467 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX DNA_TcMar-Marin 363131 363535 243 - . . . . . -1 -1 -1 . . . scaffold827 WUBlastX DNA_TcMar-Tc1 29098 29805 280 + . . . . . -1 -1 -1 . . . scaffold827 WUBlastX DNA_TcMar-Tc1 29757 30071 134 + . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX DNA_Kolobok-IS4 64291 65355 502 + . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LINE_L1 7365 7811 267 + . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy-Cigr 33908 34147 25 - . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX DNA_TcMar-Tc1 216817 217437 265 + . . scaffold1521 GLEAN mRNA 212318 231130 0.482046 + . ID=CGI_10017939; scaffold1521 WUBlastX DNA_TcMar-Tc1 217661 217798 72 + . . scaffold1521 GLEAN mRNA 212318 231130 0.482046 + . ID=CGI_10017939; scaffold1329 WUBlastX DNA_hAT-Ac 91963 92553 202 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold973 WUBlastX DNA_Kolobok-IS4 481620 482351 426 + . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold43244 WUBlastX LINE_L1-Tx1 23542 24615 41 - . . . . . -1 -1 -1 . . . scaffold42166 WUBlastX LINE_RTE-X 9218 10078 347 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-X 158433 158840 183 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-BovB 18826 18999 78 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy-Cigr 962235 962438 28 - . . . . . -1 -1 -1 . . . C32314 WUBlastX LTR_Gypsy 5 1243 862 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1-Tx1 110245 110502 146 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_RTE-X 215717 215863 67 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 57841 58293 230 + . . . . . -1 -1 -1 . . . scaffold76 WUBlastX LTR_Gypsy 22032 23537 901 + . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LINE_L2 2714 3856 561 + . . . . . -1 -1 -1 . . . scaffold1690 WUBlastX LINE_CR1 2318 2410 33 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Pao 95880 95990 40 - . . . . . -1 -1 -1 . . . scaffold1485 WUBlastX DNA_hAT 29569 29778 66 + . . scaffold1485 GLEAN mRNA 29632 31205 1 + . ID=CGI_10003290; scaffold41834 WUBlastX LINE_CR1 75469 75681 27 + . . scaffold41834 GLEAN mRNA 67458 75715 0.396652 + . ID=CGI_10005705; scaffold1179 WUBlastX DNA_Academ 877639 877698 27 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 285940 286059 61 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Ngaro 82615 82701 52 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Harbinger 42576 42716 84 - . . . . . -1 -1 -1 . . . C27792 WUBlastX DNA_Harbinger 4193 4441 40 + . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_Harbinger 156692 156766 23 - . . . . . -1 -1 -1 . . . C30848 WUBlastX DNA_hAT-Ac 169 216 20 - . . . . . -1 -1 -1 . . . C30848 WUBlastX DNA_hAT-Ac 215 313 70 - . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_hAT-Ac 18418 18519 23 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1 471588 471680 22 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Kolobok 502859 503290 21 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Penelope 478998 479141 58 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_Penelope 1603043 1603192 39 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_hAT-Tip100 720757 721296 43 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold86 WUBlastX DNA_Maverick 1464497 1464826 72 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 357608 357823 32 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_DIRS 300192 300473 25 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX LTR_Gypsy 41252 41761 21 - . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LINE_L1-Tx1 62763 62861 27 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy-Cigr 134642 134932 62 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LTR_Gypsy 289118 289696 31 + . . scaffold485 GLEAN mRNA 284170 290152 0.883286 + . ID=CGI_10024155; scaffold1352 WUBlastX LINE_L1-Tx1 401494 401817 48 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold41568 WUBlastX LINE_L2 57643 58038 27 + . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_CR1 13203 13253 26 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Pao 1500391 1500537 42 - . . scaffold86 GLEAN mRNA 1500373 1502880 0.568677 - . ID=CGI_10028217; scaffold43240 WUBlastX LINE_CR1-L2 96175 96438 78 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L2 241459 241545 20 + . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_Crypton 108618 108854 45 + . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_Crypton 108903 109043 37 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 883280 883438 31 + . . scaffold867 GLEAN mRNA 875240 884266 0.955659 - . ID=CGI_10026241; scaffold867 WUBlastX LTR_Gypsy 883280 883438 31 + . . scaffold867 GLEAN mRNA 878150 885941 1 + . ID=CGI_10026242; scaffold1024 WUBlastX LTR_Gypsy 681482 681706 38 - . . scaffold1024 GLEAN mRNA 661256 689203 0.701647 - . ID=CGI_10028542; scaffold1077 WUBlastX LTR_Gypsy 490240 490989 35 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_Harbinger 38938 39054 67 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Ngaro 111258 111338 34 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Ngaro 111615 111719 26 + . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_Sola 85336 85629 37 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_CR1-L2 1679872 1680180 80 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX DNA_TcMar-Marin 232268 232390 46 - . . . . . -1 -1 -1 . . . scaffold1886 WUBlastX DNA_Kolobok-IS4 104024 104191 38 - . . scaffold1886 GLEAN mRNA 103288 104796 0.593095 - . ID=CGI_10012886; scaffold1886 WUBlastX DNA_Kolobok-IS4 104275 104700 66 - . . scaffold1886 GLEAN mRNA 103288 104796 0.593095 - . ID=CGI_10012886; scaffold1232 WUBlastX LTR_Ngaro 328531 328617 21 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L1 37184 37321 90 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_PiggyBac 29350 29523 58 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_PiggyBac 90107 90349 103 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_RTE-BovB 47068 47343 55 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_CR1 637177 637578 92 - . . . . . -1 -1 -1 . . . scaffold39696 WUBlastX DNA_Merlin 62082 62381 70 - . . . . . -1 -1 -1 . . . scaffold34236 WUBlastX LINE_RTE-BovB 10557 10904 78 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Ngaro 83287 83406 33 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 30514 31152 106 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX DNA_hAT-Tip100 795181 795627 68 - . . . . . -1 -1 -1 . . . scaffold1260 WUBlastX DNA_Harbinger 87995 88210 81 + . . . . . -1 -1 -1 . . . scaffold44 WUBlastX DNA_Kolobok-IS4 244181 244684 86 + . . scaffold44 GLEAN mRNA 244151 247724 0.999499 + . ID=CGI_10016827; scaffold1204 WUBlastX LINE_L1 53010 53300 102 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1 306261 306518 21 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold40752 WUBlastX DNA_TcMar-Fot1 75688 76191 45 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_CR1 637375 637626 110 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_RTE-X 426655 427026 39 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 261776 262084 49 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_RTE-X 1351919 1352149 59 - . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX LINE_RTE-X 140562 140879 44 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX LINE_CR1-L2 146130 146390 112 + . . . . . -1 -1 -1 . . . scaffold38372 WUBlastX LINE_CR1-L2 52690 53079 25 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 202625 203182 61 - . . scaffold1772 GLEAN mRNA 201858 204314 0.999554 - . ID=CGI_10014812; scaffold169 WUBlastX LINE_L2 16304 16660 24 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy 3497 4414 108 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_Kolobok 6868 6975 40 - . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LTR_Gypsy 53949 54647 65 + . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX LINE_L1-Tx1 214 1062 78 - . . . . . -1 -1 -1 . . . scaffold38216 WUBlastX LINE_L1 51628 51678 23 + . . . . . -1 -1 -1 . . . scaffold38216 WUBlastX LINE_L1 52242 52358 32 + . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LINE_RTE-X 147609 147818 70 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Copia 680553 680651 32 - . . scaffold419 GLEAN mRNA 671072 685906 0.998967 - . ID=CGI_10028358; scaffold9 WUBlastX LINE_CR1-L2 81153 81449 29 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy 114987 115025 22 - . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy-Cigr 38648 38881 111 + . . scaffold78 GLEAN mRNA 33688 45299 0.504298 + . ID=CGI_10006914; scaffold3 WUBlastX LTR_Gypsy 1005490 1005531 22 - . . . . . -1 -1 -1 . . . scaffold287 WUBlastX LINE_L1 62393 62533 25 + . . . . . -1 -1 -1 . . . scaffold314 WUBlastX LTR_Ngaro 140880 141305 59 + . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_RTE-X 63309 63452 48 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L1-Tx1 114447 114764 63 + . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy-Cigr 46563 47465 49 + . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LTR_Gypsy 1332 1667 118 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 429266 429424 80 - . . . . . -1 -1 -1 . . . scaffold1728 WUBlastX DNA_Harbinger 112412 112507 41 - . . . . . -1 -1 -1 . . . scaffold1286 WUBlastX DNA_TcMar-Tc2 31619 31954 70 - . . scaffold1286 GLEAN mRNA 25687 35466 0.660843 + . ID=CGI_10009508; scaffold177 WUBlastX LINE_Penelope 119027 119323 71 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-X 731321 731530 27 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-X 731795 732067 44 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 38338 38472 96 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold850 WUBlastX LTR_DIRS 76586 77425 115 - . . . . . -1 -1 -1 . . . scaffold123 WUBlastX DNA_Merlin 101313 101513 110 + . . . . . -1 -1 -1 . . . scaffold125 WUBlastX LTR_Gypsy 51 107 29 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_L1 196378 196467 21 + . . scaffold43146 GLEAN mRNA 193579 199513 0.963019 - . ID=CGI_10009047; scaffold398 WUBlastX LINE_RTE-X 43372 43683 111 - . . scaffold398 GLEAN mRNA 36290 48236 0.999674 + . ID=CGI_10004361; scaffold593 WUBlastX LINE_RTE-X 727080 727217 49 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LINE_RTE-BovB 226731 226826 46 - . . . . . -1 -1 -1 . . . C32472 WUBlastX LTR_Gypsy-Cigr 650 853 39 + . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LINE_CR1-L2 305503 306036 38 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_CR1-L2 526840 527223 110 + . . . . . -1 -1 -1 . . . scaffold40948 WUBlastX LINE_CR1-L2 98627 99028 110 + . . scaffold40948 GLEAN mRNA 83628 99922 0.536967 + . ID=CGI_10004613; scaffold1849 WUBlastX LINE_CR1 84309 85055 142 - . . scaffold1849 GLEAN mRNA 72001 111634 0.818968 - . ID=CGI_10015914; scaffold337 WUBlastX LTR_Gypsy-Cigr 330684 331304 129 - . . . . . -1 -1 -1 . . . scaffold40072 WUBlastX DNA_Crypton 68980 69189 68 + . . scaffold40072 GLEAN mRNA 59559 75890 0.997172 - . ID=CGI_10003801; scaffold773 WUBlastX LINE_L1 283424 283657 49 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L1 778984 779400 86 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Ngaro 1812570 1812794 102 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1 217661 217768 75 + . . scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold191 WUBlastX DNA_MuDR 551181 551624 89 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold880 WUBlastX LINE_Penelope 91634 91684 37 + . . scaffold880 GLEAN mRNA 88452 95761 0.999285 + . ID=CGI_10022181; scaffold40424 WUBlastX LINE_Penelope 305 577 101 - . . . . . -1 -1 -1 . . . scaffold40424 WUBlastX LINE_Penelope 1711 1983 101 - . . . . . -1 -1 -1 . . . scaffold1811 WUBlastX LINE_RTE-X 100485 100643 76 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX DNA_TcMar-Tc1 408010 408453 80 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Gypsy-Cigr 25369 26817 528 - . . . . . -1 -1 -1 . . . scaffold40208 WUBlastX RC_Helitron 36776 37969 814 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold40208 WUBlastX RC_Helitron 37962 38708 156 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold593 WUBlastX LINE_L2 222180 222566 107 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_CR1 862389 863003 99 + . . . . . -1 -1 -1 . . . scaffold36674 WUBlastX LINE_CR1 29994 30335 177 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_IS4EU 1080676 1080801 45 - . . scaffold1154 GLEAN mRNA 1080378 1140871 0.124336 - . ID=CGI_10026207; scaffold419 WUBlastX LINE_RTE-X 807513 807827 106 + . . scaffold419 GLEAN mRNA 806382 811629 0.999675 - . ID=CGI_10028368; scaffold1001 WUBlastX LINE_RTE-X 129242 129790 139 - . . scaffold1001 GLEAN mRNA 107697 137690 0.433806 + . ID=CGI_10007119; scaffold1737 WUBlastX LINE_R1 174794 174880 22 + . . . . . -1 -1 -1 . . . scaffold251 WUBlastX LTR_DIRS 37075 38733 964 + . . scaffold251 GLEAN mRNA 16871 39741 0.998838 - . ID=CGI_10005216; scaffold251 WUBlastX LTR_DIRS 37075 38733 964 + . . scaffold251 GLEAN mRNA 27105 44764 0.0632149 + . ID=CGI_10005217; scaffold42392 WUBlastX LTR_Gypsy-Cigr 142235 143824 973 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_DIRS 541156 542409 346 + . . . . . -1 -1 -1 . . . scaffold38498 WUBlastX LTR_Ngaro 36910 37326 282 - . . . . . -1 -1 -1 . . . scaffold1226 WUBlastX LINE_RTE-BovB 30308 31474 1002 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 187609 188388 597 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 188411 189070 200 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold1329 WUBlastX LINE_L1-Tx1 12907 14220 505 - . . . . . -1 -1 -1 . . . scaffold839 WUBlastX LINE_L1-Tx1 83778 84098 20 - . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold457 WUBlastX LTR_ERV1 259569 260270 169 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_TcMar-Tc1 307178 307633 184 + . . . . . -1 -1 -1 . . . scaffold1068 WUBlastX DNA_Kolobok-IS4 1260 1655 92 + . . . . . -1 -1 -1 . . . scaffold1068 WUBlastX DNA_Kolobok-IS4 1657 1836 48 + . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LTR_Gypsy 71785 72081 41 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 625472 625993 22 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 1503642 1504649 64 - . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX DNA_TcMar-Tc1 218136 218723 121 - . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX DNA_Maverick 135316 135693 87 - . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Gypsy 74143 75138 417 - . . . . . -1 -1 -1 . . . scaffold42246 WUBlastX DNA_hAT 43911 44600 139 + . . scaffold42246 GLEAN mRNA 5727 48525 0.65558 + . ID=CGI_10006474; scaffold1670 WUBlastX LTR_Gypsy 441223 441558 72 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_L1 304665 305423 76 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LINE_L1-Tx1 172153 172671 140 - . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold48 WUBlastX DNA_TcMar-Tc1 732844 733059 74 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LINE_L2 312891 313205 85 + . . scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold534 WUBlastX LTR_Gypsy 41885 42673 140 + . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX DNA_hAT-Tip100 2590 2754 36 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_Maverick 825550 825846 112 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 308559 309002 48 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy-Cigr 29651 30175 51 - . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 115570 115713 25 + . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX LINE_L1-Tx1 102758 103000 55 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 630210 630839 342 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold448 WUBlastX LTR_Gypsy 174512 174748 177 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LTR_Gypsy 20372 20494 56 + . . . . . -1 -1 -1 . . . scaffold37790 WUBlastX LINE_L1 44001 44510 192 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_L2 105709 106071 186 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-BovB 424140 424472 110 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-BovB 424454 424543 20 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-BovB 425594 425737 100 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-X 833987 834397 23 + . . scaffold601 GLEAN mRNA 814190 834629 0.512568 + . ID=CGI_10026849; scaffold705 WUBlastX LINE_L1-Tx1 407098 409239 1092 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX LINE_L1-Tx1 409791 410612 85 + . . scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold461 WUBlastX DNA_Maverick 622195 622941 336 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Maverick 623192 623866 547 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Maverick 624718 625071 200 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 72281 72352 35 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Ngaro 1246546 1246746 48 + . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX LTR_Gypsy 53282 53539 49 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold393 WUBlastX DNA_IS4EU 1008390 1008932 63 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_RTE-X 336830 336913 48 + . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX LINE_L1-Tx1 107568 108026 145 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold885 WUBlastX LINE_L2 559137 559307 52 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_CR1-L2 465861 466325 194 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LTR_Gypsy 87904 87984 37 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 129845 130600 159 - . . scaffold115 GLEAN mRNA 126783 131612 1 - . ID=CGI_10021378; scaffold867 WUBlastX LINE_RTE-X 397483 397662 92 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 398460 398549 33 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX DNA_Maverick 85988 86176 39 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LINE_RTE-X 75356 75634 172 + . . scaffold43122 GLEAN mRNA 75079 75402 0.99566 + . ID=CGI_10008936; scaffold1894 WUBlastX DNA_Sola 100931 102421 115 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_Ngaro 279067 279492 204 - . . scaffold172 GLEAN mRNA 274118 285723 0.998306 - . ID=CGI_10013528; scaffold829 WUBlastX LINE_L1 197977 199068 132 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_CR1 485430 485831 148 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_CR1 485861 486091 39 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Copia 135761 136234 233 + . . scaffold678 GLEAN mRNA 131890 142320 0.499963 + . ID=CGI_10026336; scaffold1403 WUBlastX LTR_DIRS 612223 613479 233 - . . scaffold1403 GLEAN mRNA 612208 612819 0.999999 - . ID=CGI_10020188; scaffold583 WUBlastX LTR_DIRS 279627 280883 233 + . . scaffold583 GLEAN mRNA 279966 280898 0.998382 + . ID=CGI_10023617; scaffold1588 WUBlastX LTR_Gypsy 407036 408217 207 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 228074 228550 224 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_MuDR 272837 272893 21 - . . . . . -1 -1 -1 . . . scaffold1195 WUBlastX LINE_RTE-X 48905 49393 133 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Helitron 710714 712816 1495 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Helitron 713147 714418 313 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX DNA_hAT-Ac 222018 222380 153 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 148244 148546 153 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX DNA_Harbinger 324108 324875 187 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_IS4EU 57415 58302 203 + . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold487 WUBlastX LINE_RTE-X 8649 8867 47 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 188874 188942 25 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Gypsy 2596 3441 249 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Kolobok 293828 294016 25 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold864 WUBlastX DNA_TcMar-Tc1 2784 3161 105 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Ngaro 56008 56547 183 - . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold70 WUBlastX LTR_Ngaro 295095 295733 215 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LINE_RTE-X 39880 40344 216 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX DNA_Maverick 73278 73799 236 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LTR_Gypsy 62123 63082 237 - . . scaffold1825 GLEAN mRNA 52552 63242 0.967566 - . ID=CGI_10011138; scaffold485 WUBlastX LINE_L1-Tx1 865263 866342 187 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 590243 590578 163 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy 74521 74877 118 + . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX LINE_RTE-X 41748 42251 177 + . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_RTE-X 96124 96462 80 - . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LTR_Gypsy-Cigr 76077 76175 32 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L2-Hydra 197374 197919 85 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LTR_Pao 87281 88114 119 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy 239974 240513 172 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold591 WUBlastX LTR_Gypsy 229386 229910 118 - . . . . . -1 -1 -1 . . . scaffold40216 WUBlastX DNA_Academ 30885 31235 156 + . . . . . -1 -1 -1 . . . scaffold40216 WUBlastX DNA_Academ 31238 31915 56 + . . . . . -1 -1 -1 . . . scaffold40216 WUBlastX DNA_Academ 33078 33173 27 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy-Cigr 427802 428257 45 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Pao 865307 865573 36 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 92208 92336 81 + . . . . . -1 -1 -1 . . . C30988 WUBlastX LINE_CR1 7030 7350 64 + . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX RC_Helitron 38815 39003 69 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold363 WUBlastX LINE_Penelope 355751 356098 80 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_L2 46790 47728 220 + . . scaffold754 GLEAN mRNA 34463 47005 0.401358 + . ID=CGI_10014062; scaffold1281 WUBlastX LTR_DIRS 12296 12592 203 - . . scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1630 WUBlastX DNA_hAT 209316 209945 77 - . . scaffold1630 GLEAN mRNA 208694 211851 1 - . ID=CGI_10013425; scaffold1104 WUBlastX DNA_Kolobok-IS4 527309 528067 309 + . . scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_Kolobok-IS4 527309 528067 309 + . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold40836 WUBlastX LINE_RTE-X 87304 87486 135 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold1777 WUBlastX LTR_DIRS 42322 42504 78 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX DNA_TcMar-Tc1 528157 528639 247 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_L2 46695 47012 127 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy-Cigr 437062 437433 229 - . . . . . -1 -1 -1 . . . C35532 WUBlastX LINE_RTE-BovB 21736 22308 371 + . . . . . -1 -1 -1 . . . C32108 WUBlastX DNA_En-Spm 11 1447 296 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_RTE-X 25511 25729 23 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1619 WUBlastX LINE_RTE-BovB 235824 235964 76 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_RTE-BovB 236168 236251 33 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_RTE-BovB 236335 236631 161 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_RTE-BovB 236855 237295 109 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX DNA_hAT-Tip100 40168 40752 100 + . . . . . -1 -1 -1 . . . scaffold870 WUBlastX DNA_hAT 49117 49275 38 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold1155 WUBlastX LTR_Gypsy 183540 183689 26 + . . scaffold1155 GLEAN mRNA 180232 184015 0.838121 + . ID=CGI_10007798; scaffold85 WUBlastX LINE_L1 288729 289154 34 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1 366983 367588 104 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L2 123152 123316 44 + . . . . . -1 -1 -1 . . . scaffold1566 WUBlastX LTR_Pao 7615 8010 292 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_L1-Tx1 499372 499644 20 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 310533 310772 208 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 317899 318138 208 + . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LTR_DIRS 19003 19608 390 - . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_L1-Tx1 230143 230952 144 - . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_L1-Tx1 230970 231437 200 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_TcMar-Fot1 1088994 1089671 322 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold20 WUBlastX LINE_L1-Tx1 240464 241648 70 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX DNA_TcMar-m44 636453 637337 559 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX DNA_TcMar-m44 120005 120889 559 + . . scaffold70 GLEAN mRNA 110646 126975 0.99511 - . ID=CGI_10024754; scaffold42558 WUBlastX LINE_L1-Tx1 122605 122817 93 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Pao 147624 147914 161 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_L1-Tx1 629778 631334 444 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold198 WUBlastX LINE_RTE-X 751261 751635 131 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LINE_L1-Tx1 95940 97511 447 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 633604 633843 27 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold34 WUBlastX DNA_IS4EU 290723 291523 400 - . . scaffold34 GLEAN mRNA 290500 292814 0.678889 - . ID=CGI_10015943; scaffold35994 WUBlastX LINE_Penelope 11220 11702 144 + . . scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold619 WUBlastX LINE_RTE-X 764790 765596 387 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Pao 46124 46960 207 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 268966 269229 76 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_L2 167838 168317 262 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LTR_Gypsy 272218 272577 109 - . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LINE_L1 21898 22464 110 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Gypsy-Cigr 6034 6642 384 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 7151 7621 113 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 8065 8253 120 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 8232 8408 81 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 8402 8575 70 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold43122 WUBlastX LTR_Ngaro 77190 77723 319 + . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LINE_L1-Tx1 36371 36559 40 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 65392 65436 33 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold1179 WUBlastX LINE_RTE-X 423353 423772 227 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 160240 160434 27 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold40492 WUBlastX LINE_RTE-BovB 45683 45790 44 + . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_RTE-BovB 46490 46885 155 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX DNA_Academ 241999 242241 91 - . . scaffold980 GLEAN mRNA 241945 242148 0.518358 - . ID=CGI_10019216; scaffold980 WUBlastX DNA_Academ 241999 242241 91 - . . scaffold980 GLEAN mRNA 242201 242902 0.579788 - . ID=CGI_10019217; scaffold751 WUBlastX LINE_L1-Tx1 146917 147786 452 + . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LINE_L1-Tx1 147867 148709 170 + . . . . . -1 -1 -1 . . . scaffold1180 WUBlastX LINE_RTE-X 123964 124647 163 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_RTE-X 676457 676705 67 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Ngaro 569907 570557 354 - . . . . . -1 -1 -1 . . . C25050 WUBlastX DNA_hAT-Tip100 1090 2448 611 - . . . . . -1 -1 -1 . . . scaffold1247 WUBlastX DNA_TcMar-Fot1 4322 5593 783 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_L1-Tx1 23710 24618 179 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_L1-Tx1 26683 26739 24 - . . . . . -1 -1 -1 . . . scaffold1879 WUBlastX LINE_CR1-L2 120136 120504 183 - . . scaffold1879 GLEAN mRNA 117371 122368 1 - . ID=CGI_10007960; C30526 WUBlastX DNA_TcMar-Tc2 2452 2679 91 - . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 88149 89063 422 - . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_RTE-X 69748 70518 431 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_RTE-X 70524 70721 127 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_RTE-X 70729 71244 361 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold1286 WUBlastX LINE_CR1 4189 4302 27 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold1267 WUBlastX LINE_CR1 831978 832040 27 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX DNA_TcMar-Fot1 78979 79056 27 + . . . . . -1 -1 -1 . . . scaffold1677 WUBlastX LTR_Pao 10880 10930 30 - . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_L2 96429 96644 31 - . . . . . -1 -1 -1 . . . scaffold40010 WUBlastX DNA_En-Spm 35966 36106 67 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LINE_L2 39140 39208 21 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold433 WUBlastX LINE_L2 283587 283865 38 - . . . . . -1 -1 -1 . . . C28414 WUBlastX DNA_hAT-Tip100 1291 1518 61 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_hAT-Tip100 1053921 1054268 45 + . . scaffold481 GLEAN mRNA 1047969 1057631 0.5 - . ID=CGI_10027259; scaffold107 WUBlastX RC_Helitron 796166 796480 52 + . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX DNA_TcMar-Marin 195645 195809 24 + . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_Jockey 57120 57704 39 - . . . . . -1 -1 -1 . . . scaffold43072 WUBlastX LTR_Gypsy 180079 180162 20 - . . scaffold43072 GLEAN mRNA 175017 183309 0.714416 - . ID=CGI_10008704; scaffold43072 WUBlastX LTR_Gypsy 180079 180162 20 - . . scaffold43072 GLEAN mRNA 178139 190258 0.999307 + . ID=CGI_10008705; scaffold1307 WUBlastX DNA_Harbinger 260992 261384 62 - . . . . . -1 -1 -1 . . . C33126 WUBlastX DNA_TcMar-Tc1 5997 6230 46 - . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LINE_L1 39167 39577 28 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 613738 613935 30 - . . . . . -1 -1 -1 . . . scaffold98 WUBlastX DNA_TcMar-Marin 230949 231128 36 - . . . . . -1 -1 -1 . . . scaffold1026 WUBlastX LINE_Penelope 60382 60657 47 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_L1 151320 151490 52 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1 82431 82748 52 - . . scaffold829 GLEAN mRNA 82186 82748 0.9999 - . ID=CGI_10021139; scaffold321 WUBlastX LINE_L1 171525 172142 42 - . . scaffold321 GLEAN mRNA 170991 171881 0.996199 - . ID=CGI_10020800; scaffold794 WUBlastX LINE_Penelope 75112 75468 55 + . . scaffold794 GLEAN mRNA 66441 78697 0.999826 + . ID=CGI_10017136; scaffold1385 WUBlastX LINE_RTE-X 24682 24831 40 + . . scaffold1385 GLEAN mRNA 22815 31330 0.957817 - . ID=CGI_10013834; scaffold1009 WUBlastX LINE_RTE-X 756739 756933 46 - . . scaffold1009 GLEAN mRNA 749055 758501 1 - . ID=CGI_10028758; scaffold41636 WUBlastX LINE_RTE-X 95803 95997 26 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_RTE-X 73256 73615 26 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold604 WUBlastX LINE_RTE-X 45084 45341 43 - . . scaffold604 GLEAN mRNA 42759 53290 0.454666 + . ID=CGI_10005591; scaffold42402 WUBlastX LINE_RTE-X 130059 130262 68 + . . scaffold42402 GLEAN mRNA 124224 132825 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 130059 130262 68 + . . scaffold42402 GLEAN mRNA 127799 151962 1 + . ID=CGI_10006796; scaffold42584 WUBlastX LINE_Proto2 134651 134992 31 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 13250 13339 37 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 13390 13482 28 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_Sola 41480 41827 55 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 142623 142856 23 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_L1-Tx1 143135 143251 30 - . . . . . -1 -1 -1 . . . scaffold1481 WUBlastX LINE_L2 55345 56358 34 - . . . . . -1 -1 -1 . . . scaffold35110 WUBlastX LINE_CR1 14797 14988 67 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2 25130 25222 22 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L1 629747 630340 26 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_IS4EU 539772 540164 88 + . . scaffold1101 GLEAN mRNA 537182 541543 0.997138 + . ID=CGI_10023032; C24440 WUBlastX DNA_IS4EU 643 1035 88 + . . . . . -1 -1 -1 . . . C27588 WUBlastX LINE_Penelope 75 179 51 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_Penelope 34753 34968 23 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_TcMar-Marin 624054 624170 36 + . . scaffold115 GLEAN mRNA 617761 631483 0.999676 + . ID=CGI_10021409; scaffold1221 WUBlastX LINE_RTE-X 446526 446933 28 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 586109 586276 21 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold934 WUBlastX LINE_L1-Tx1 245509 245913 33 + . . scaffold934 GLEAN mRNA 244426 254135 0.975523 + . ID=CGI_10015445; scaffold1808 WUBlastX DNA_TcMar-Tc2 83715 84023 49 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LTR_Pao 80735 81292 56 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1 913418 913573 23 - . . scaffold733 GLEAN mRNA 898136 929166 0.513726 - . ID=CGI_10025894; scaffold681 WUBlastX LINE_CR1-L2 34994 35437 45 + . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold88 WUBlastX LTR_Gypsy 222254 222316 35 - . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_L1 137945 138160 36 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1 806169 806294 46 + . . scaffold3 GLEAN mRNA 805376 811617 0.747251 + . ID=CGI_10027304; scaffold1315 WUBlastX LINE_RTE-X 560837 561052 49 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 236010 236147 25 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L1-Tx1 518443 518844 29 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 117231 117695 123 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Gypsy 154579 154962 82 - . . scaffold313 GLEAN mRNA 152241 158129 0.999929 - . ID=CGI_10026586; scaffold1627 WUBlastX LTR_Gypsy 38510 38725 55 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX DNA_IS4EU 605998 606171 65 + . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold1362 WUBlastX DNA_IS4EU 572375 572548 65 - . . scaffold1362 GLEAN mRNA 572276 574419 0.938876 - . ID=CGI_10023946; scaffold1024 WUBlastX DNA_hAT-Hobo 135515 135679 98 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX DNA_hAT-Ac 132037 132210 21 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_L1-Tx1 299219 299416 44 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LINE_RTE-X 50526 50780 61 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 19045 19308 69 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_RTE-BovB 865499 865594 45 - . . . . . -1 -1 -1 . . . scaffold487 WUBlastX DNA_TcMar-Tc2 5855 6526 78 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 575649 575729 45 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1352 WUBlastX DNA_TcMar-Tc1 190012 190206 85 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 303496 303825 77 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_hAT-hATw 374421 374570 58 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_hAT-hATw 374579 374851 51 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX RC_Helitron 121863 122312 116 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_P 489352 489642 102 + . . . . . -1 -1 -1 . . . scaffold41530 WUBlastX LINE_L2 8687 8857 97 + . . . . . -1 -1 -1 . . . scaffold35558 WUBlastX LINE_CR1-L2 15099 15347 95 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_CR1-L2 470175 470447 98 + . . . . . -1 -1 -1 . . . scaffold491 WUBlastX LINE_L2 48915 49442 53 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX DNA_TcMar-Marin 269258 269617 87 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_Penelope 50143 50406 78 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_L1 679075 679134 20 + . . . . . -1 -1 -1 . . . scaffold35694 WUBlastX LINE_RTE-BovB 23226 23351 29 - . . . . . -1 -1 -1 . . . scaffold35694 WUBlastX LINE_RTE-BovB 23933 24004 24 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Gypsy 10294 10779 64 + . . . . . -1 -1 -1 . . . C35282 WUBlastX LTR_Gypsy 2030 2407 121 + . . C35282 GLEAN mRNA 1142 2704 0.999228 + . ID=CGI_10001456; scaffold43782 WUBlastX LTR_Gypsy-Cigr 82346 82912 123 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_I 199638 199793 45 + . . . . . -1 -1 -1 . . . scaffold748 WUBlastX LINE_L1-Tx1 28226 28651 21 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_RTE-BovB 108491 108832 99 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 229219 229701 110 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LINE_RTE-X 25479 25925 79 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 69570 69659 22 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 113204 113479 142 + . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LTR_Gypsy 209161 209655 97 - . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LTR_Ngaro 175954 176097 92 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold33980 WUBlastX LTR_Ngaro 9421 9690 108 - . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold404 WUBlastX LTR_DIRS 320698 320841 54 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold425 WUBlastX DNA_Kolobok-IS4 224332 224535 39 + . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX RC_Helitron 43799 44341 66 + . . scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; C32606 WUBlastX DNA_Harbinger 6583 6879 100 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Harbinger 387990 388367 108 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Maverick 207806 208162 110 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX DNA_Maverick 157976 158263 58 - . . . . . -1 -1 -1 . . . C27882 WUBlastX LINE_RTE-X 2658 3395 41 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_RTE-X 300430 300936 61 + . . . . . -1 -1 -1 . . . scaffold1533 WUBlastX LINE_RTE-X 206018 206089 39 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_RTE-X 227731 227832 26 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_L1-Tx1 43352 43852 43 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Pao 1212325 1213359 106 - . . scaffold1009 GLEAN mRNA 1197147 1238817 0.350484 + . ID=CGI_10028788; scaffold38650 WUBlastX LTR_DIRS 53264 53617 122 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 514264 514611 109 - . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX DNA_TcMar-Tc1 61990 62277 40 + . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LTR_Gypsy 118468 118665 26 - . . . . . -1 -1 -1 . . . C26966 WUBlastX LTR_Gypsy 784 981 26 + . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LINE_L1-Tx1 161052 161417 110 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_CR1 234954 235418 117 - . . scaffold925 GLEAN mRNA 232303 237491 1 + . ID=CGI_10017421; scaffold1 WUBlastX LINE_CR1 112790 112882 20 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_DIRS 207264 207686 118 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy 174846 174998 62 - . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX LTR_Gypsy 132420 132476 22 - . . . . . -1 -1 -1 . . . scaffold397 WUBlastX LINE_L1 12434 12994 127 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 205860 206249 128 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold660 WUBlastX LINE_L1-Tx1 98868 99278 108 - . . scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold43526 WUBlastX LINE_L1-Tx1 42864 43361 67 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; C33244 WUBlastX LTR_Gypsy 1 1512 926 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_RTE-X 434599 436566 732 - . . . . . -1 -1 -1 . . . scaffold34894 WUBlastX LINE_Penelope 16202 16357 84 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_CR1-L2 412327 413028 84 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Ngaro 251394 251768 134 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold680 WUBlastX LTR_Ngaro 3685 4089 129 + . . . . . -1 -1 -1 . . . scaffold1056 WUBlastX LTR_DIRS 147781 148338 109 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_R2-Hero 310438 310707 83 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_IS4EU 851929 852180 147 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_R2 337732 337791 20 + . . . . . -1 -1 -1 . . . scaffold1086 WUBlastX LINE_RTE-X 51455 52204 72 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LINE_RTE-X 261440 261868 107 - . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX DNA_Sola 22330 22845 86 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_Sola 1578 1676 32 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Tc1 222799 223173 62 + . . . . . -1 -1 -1 . . . scaffold432 WUBlastX DNA_TcMar-Tc1 324551 324850 164 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LTR_Gypsy 29659 29838 44 + . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LTR_Gypsy 30130 30522 164 + . . . . . -1 -1 -1 . . . C29620 WUBlastX LINE_CR1-L2 1846 2442 182 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 242614 242718 33 + . . . . . -1 -1 -1 . . . scaffold542 WUBlastX DNA_Harbinger 382969 383370 147 - . . . . . -1 -1 -1 . . . scaffold39482 WUBlastX RC_Helitron 47937 48584 115 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_Penelope 671035 673053 1074 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy-Troyk 361039 361860 524 + . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_L2 228771 228902 39 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold34388 WUBlastX LTR_Pao 3805 4119 90 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 424762 425037 94 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold621 WUBlastX LTR_Gypsy 428771 429100 124 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_R2-Hero 276157 276297 77 + . . . . . -1 -1 -1 . . . scaffold35276 WUBlastX LINE_L1-Tx1 16521 16967 33 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L2 445499 447097 112 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX DNA_Kolobok-IS4 24140 24610 160 + . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX DNA_Harbinger 149236 149355 51 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-BovB 161550 161648 33 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-X 981564 982364 97 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 1120544 1120975 90 - . . scaffold77 GLEAN mRNA 1111468 1123998 0.545449 + . ID=CGI_10028021; scaffold1357 WUBlastX LTR_Gypsy-Cigr 5818 7449 1211 + . . . . . -1 -1 -1 . . . scaffold40614 WUBlastX LINE_L2 60948 61787 370 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LINE_L2 61802 62284 265 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LINE_L2 62290 62598 256 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LINE_L2 62673 63365 265 - . . scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold469 WUBlastX LTR_Gypsy 255086 256363 421 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_Gypsy-Cigr 373503 374138 68 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_Gypsy-Cigr 374306 374854 85 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_En-Spm 614356 614649 47 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold441 WUBlastX DNA_IS4EU 49541 49690 24 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 31366 31512 106 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L1-Tx1 197073 197486 192 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_L1-Tx1 467592 470261 878 + . . scaffold1703 GLEAN mRNA 460683 476446 0.999324 - . ID=CGI_10023062; scaffold1075 WUBlastX LTR_Pao 129354 129743 66 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_CR1 172431 173006 91 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy 214866 215900 160 + . . scaffold1599 GLEAN mRNA 204689 219809 0.999676 - . ID=CGI_10027141; scaffold962 WUBlastX LTR_Gypsy 140509 141531 173 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LTR_Gypsy 37532 38353 141 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_IS4EU 352082 352432 76 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX DNA_IS4EU 509033 509713 176 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Harbinger 56456 56617 98 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold424 WUBlastX LTR_Gypsy 66144 66383 52 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 209555 210142 166 - . . scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold440 WUBlastX LTR_DIRS 181646 181984 45 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_DIRS 181975 183900 1456 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 475399 476430 187 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_CR1 150577 150720 62 + . . . . . -1 -1 -1 . . . C31096 WUBlastX LTR_Ngaro 6578 7393 156 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; scaffold337 WUBlastX LINE_L1-Tx1 144457 144711 21 - . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_ERV1 52107 52856 132 - . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1-Tx1 116358 117779 337 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Ac 160467 160886 198 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_RTE-X 313485 314756 131 - . . . . . -1 -1 -1 . . . scaffold29316 WUBlastX LINE_RTE-X 1454 3802 1136 - . . . . . -1 -1 -1 . . . scaffold29316 WUBlastX LINE_RTE-X 4164 5000 209 - . . . . . -1 -1 -1 . . . scaffold37002 WUBlastX LINE_CR1 9328 10233 141 + . . . . . -1 -1 -1 . . . scaffold139 WUBlastX LTR_DIRS 3726 4418 134 - . . . . . -1 -1 -1 . . . scaffold1492 WUBlastX LINE_L1 82866 83489 68 - . . . . . -1 -1 -1 . . . scaffold1492 WUBlastX LINE_L1 83811 83897 27 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 946686 947285 229 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold170 WUBlastX LINE_RTE-X 107918 108121 84 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L1-Tx1 275410 276747 795 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 23499 23657 29 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1347 WUBlastX DNA_IS4EU 25542 25673 50 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1764 WUBlastX DNA_Kolobok 731 952 80 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX DNA_TcMar-Tc2 17062 17226 57 + . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX DNA_Kolobok 11334 11483 96 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 11627 11788 73 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 11895 12086 64 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold1490 WUBlastX DNA_Harbinger 80831 81040 122 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX DNA_Harbinger 81089 81133 36 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX DNA_Harbinger 81396 81557 116 + . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX DNA_Harbinger 94646 94765 28 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 458823 459815 148 - . . scaffold107 GLEAN mRNA 449056 473669 0.986168 - . ID=CGI_10025055; scaffold1016 WUBlastX LINE_L1-Tx1 131210 131269 37 - . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_L1-Tx1 148956 149129 37 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LTR_DIRS 102932 103225 49 + . . scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold211 WUBlastX LTR_Pao 1018168 1018971 668 - . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX LTR_Gypsy 52459 52974 188 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold39972 WUBlastX LTR_Gypsy 53067 53375 39 - . . scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold709 WUBlastX DNA_hAT-hATw 339209 339334 36 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Ac 159795 160052 69 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_DIRS 77707 77865 50 + . . . . . -1 -1 -1 . . . scaffold665 WUBlastX LINE_RTE-X 110528 113857 1974 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_Academ 470883 471641 83 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_Academ 471581 472057 177 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 597782 598075 58 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 317760 317906 55 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 376654 376860 88 + . . . . . -1 -1 -1 . . . C26448 WUBlastX DNA_Kolobok 1685 2428 189 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_RTE-X 285836 286102 76 + . . . . . -1 -1 -1 . . . scaffold42364 WUBlastX LINE_L1-Tx1 105111 106688 42 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L1-Tx1 70420 71997 42 - . . . . . -1 -1 -1 . . . scaffold265 WUBlastX LTR_Pao 24383 24664 98 + . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy 96747 96947 72 + . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold70 WUBlastX DNA_TcMar-Tc1 602499 602798 102 + . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1-Tx1 45270 45395 54 - . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1-Tx1 45953 46114 83 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 318611 318868 63 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LTR_Pao 274460 274663 24 - . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold347 WUBlastX LINE_RTE-X 548945 549754 170 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LTR_Gypsy 50130 50732 112 - . . . . . -1 -1 -1 . . . scaffold182 WUBlastX DNA_Harbinger 326 661 334 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX LINE_L1 26614 27189 151 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1 1303234 1303650 42 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 1369367 1370521 313 + . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX DNA_TcMar-Tc1 592185 592346 69 - . . scaffold1031 GLEAN mRNA 571823 599273 0.583554 - . ID=CGI_10019718; scaffold1402 WUBlastX LTR_Ngaro 437285 437485 149 + . . . . . -1 -1 -1 . . . C31912 WUBlastX LINE_RTE-X 1 891 325 - . . . . . -1 -1 -1 . . . C31246 WUBlastX LTR_Ngaro 8204 8326 51 - . . . . . -1 -1 -1 . . . C31246 WUBlastX LTR_Ngaro 8991 9104 27 - . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX DNA_Maverick 12586 12819 47 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 128921 129211 143 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_CR1-L2 144586 144816 21 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Ngaro 553178 554299 253 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 77899 78198 134 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy-Cigr 42840 44039 138 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1 181851 181916 21 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold1382 WUBlastX DNA_Harbinger 217967 218074 21 + . . scaffold1382 GLEAN mRNA 212938 228080 0.974072 - . ID=CGI_10011177; scaffold1382 WUBlastX DNA_Harbinger 219353 219634 220 + . . scaffold1382 GLEAN mRNA 218944 220078 0.999189 + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 219353 219634 220 + . . scaffold1382 GLEAN mRNA 212938 228080 0.974072 - . ID=CGI_10011177; scaffold38492 WUBlastX DNA_Maverick 9904 10020 105 + . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX LTR_Ngaro 29526 30398 454 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold54 WUBlastX LTR_Gypsy 79644 79787 20 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold38876 WUBlastX LTR_Gypsy 27051 27377 39 + . . . . . -1 -1 -1 . . . scaffold110 WUBlastX LINE_RTE-BovB 90845 91132 104 + . . . . . -1 -1 -1 . . . scaffold110 WUBlastX LINE_RTE-BovB 91147 91347 85 + . . . . . -1 -1 -1 . . . scaffold110 WUBlastX LINE_RTE-BovB 91467 91718 93 + . . . . . -1 -1 -1 . . . scaffold110 WUBlastX LINE_RTE-BovB 91906 92334 101 + . . . . . -1 -1 -1 . . . scaffold38568 WUBlastX LINE_L2 54048 55325 364 + . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LTR_Gypsy 63701 63805 24 - . . . . . -1 -1 -1 . . . scaffold38190 WUBlastX LINE_RTE-X 1294 1968 257 - . . . . . -1 -1 -1 . . . scaffold42486 WUBlastX DNA_TcMar-Tc1 148336 148434 29 + . . scaffold42486 GLEAN mRNA 141403 154918 0.998251 - . ID=CGI_10006982; scaffold39640 WUBlastX LINE_L1-Tx1 57747 57968 20 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_RTE-X 706739 708058 446 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_IS4EU 216279 217037 478 - . . scaffold1714 GLEAN mRNA 216267 217025 1 - . ID=CGI_10013674; scaffold1703 WUBlastX DNA_Maverick 220849 221073 86 - . . scaffold1703 GLEAN mRNA 215396 234951 0.309503 + . ID=CGI_10023049; scaffold298 WUBlastX DNA_hAT-Tip100 163502 164290 221 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_hAT-Tip100 423232 423387 104 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 423519 423953 261 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 423956 424078 38 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 424075 424593 193 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold1333 WUBlastX LTR_Ngaro 55235 56761 551 - . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold549 WUBlastX LINE_RTE-BovB 59078 59395 369 + . . scaffold549 GLEAN mRNA 50843 62768 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59078 59395 369 + . . scaffold549 GLEAN mRNA 31331 63327 0.976872 + . ID=CGI_10004103; scaffold549 WUBlastX LINE_RTE-BovB 59660 59884 131 + . . scaffold549 GLEAN mRNA 50843 62768 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59660 59884 131 + . . scaffold549 GLEAN mRNA 31331 63327 0.976872 + . ID=CGI_10004103; scaffold658 WUBlastX LINE_CR1-L2 387631 388392 259 - . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LINE_L1-Tx1 186026 186298 39 + . . . . . -1 -1 -1 . . . scaffold482 WUBlastX LINE_RTE-X 214201 214368 62 + . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LINE_L1-Tx1 194744 195016 31 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 392202 393152 140 - . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_RTE-X 49594 50013 131 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 132211 132654 113 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1 1257520 1257930 108 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 707141 707317 45 + . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Pao 39755 39943 200 - . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LTR_Gypsy 30708 31502 91 + . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_L1-Tx1 146672 148606 601 + . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_L1-Tx1 149303 149449 31 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 133696 134790 325 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_CR1-L2 1037 2065 590 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 6779 7948 521 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_CR1 1070291 1070431 26 - . . . . . -1 -1 -1 . . . scaffold181 WUBlastX LINE_CR1-L2 26565 26720 54 + . . scaffold181 GLEAN mRNA 23184 28128 0.999547 + . ID=CGI_10003023; scaffold1327 WUBlastX LINE_L2 348658 348933 33 + . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_L2 88669 88875 70 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold102 WUBlastX LINE_L2 191550 191978 34 - . . . . . -1 -1 -1 . . . scaffold1333 WUBlastX LINE_CR1 40767 40895 35 - . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LINE_CR1 33436 33651 76 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold544 WUBlastX LINE_CR1 137047 137274 33 - . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1 30769 31044 23 - . . . . . -1 -1 -1 . . . scaffold1886 WUBlastX DNA_PiggyBac 176957 177040 22 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Pao 85747 86070 55 - . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX LTR_Copia 36836 36934 46 + . . scaffold37880 GLEAN mRNA 36587 37120 0.99998 + . ID=CGI_10002539; scaffold37880 WUBlastX LTR_Copia 36836 36934 46 + . . scaffold37880 GLEAN mRNA 32540 47810 0.54365 - . ID=CGI_10002538; scaffold370 WUBlastX LTR_Gypsy 849488 849568 24 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LTR_Ngaro 95282 95407 42 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_Crypton 735511 735777 78 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L2 458762 459271 43 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_Jockey 196718 197233 36 - . . scaffold854 GLEAN mRNA 197153 198070 0.635503 - . ID=CGI_10022241; scaffold619 WUBlastX DNA_hAT-Ac 468732 468884 49 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_hAT-Tip100 212641 213012 53 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX RC_Helitron 69678 69905 76 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX RC_Helitron 198839 199243 58 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX DNA_IS4EU 62538 63224 56 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_TcMar-Marin 373450 373566 39 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_IS4EU 129176 129301 36 - . . scaffold1730 GLEAN mRNA 128597 135866 0.888729 - . ID=CGI_10012255; scaffold1359 WUBlastX DNA_IS4EU 231114 231992 27 + . . scaffold1359 GLEAN mRNA 231045 231436 1 - . ID=CGI_10013244; scaffold1328 WUBlastX LTR_Gypsy 64017 64349 89 - . . . . . -1 -1 -1 . . . scaffold1726 WUBlastX LTR_Gypsy 348171 348341 35 - . . scaffold1726 GLEAN mRNA 346832 358042 0.529003 - . ID=CGI_10015641; scaffold39014 WUBlastX DNA_Harbinger 61790 61972 24 + . . scaffold39014 GLEAN mRNA 61763 62871 0.6936 + . ID=CGI_10003136; scaffold309 WUBlastX LINE_L2 73457 73795 65 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_L1 173102 173713 29 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_L1 212287 212559 31 + . . scaffold1037 GLEAN mRNA 210599 214513 0.72876 + . ID=CGI_10017456; C28684 WUBlastX LINE_L2 5153 5332 20 - . . . . . -1 -1 -1 . . . scaffold33922 WUBlastX LINE_L2 6312 7148 29 - . . scaffold33922 GLEAN mRNA 5793 7574 0.69447 - . ID=CGI_10001167; scaffold41228 WUBlastX LINE_L2 15885 16544 76 + . . scaffold41228 GLEAN mRNA 12628 43602 0.144447 - . ID=CGI_10004861; scaffold35796 WUBlastX LINE_Penelope 289 573 26 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_Penelope 905265 905552 46 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_Penelope 22740 23168 28 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LINE_Penelope 317525 317758 43 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_RTE-X 481646 481777 35 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_RTE-X 172993 173358 35 - . . scaffold113 GLEAN mRNA 167918 175905 0.777732 + . ID=CGI_10021288; scaffold1188 WUBlastX LINE_RTE-X 1061674 1061832 73 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX LINE_RTE-X 94472 94600 46 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LINE_RTE-X 195593 195811 31 + . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold160 WUBlastX LINE_RTE-X 342532 342738 66 + . . scaffold160 GLEAN mRNA 341764 344858 1 + . ID=CGI_10020592; scaffold1750 WUBlastX LINE_RTE-X 650961 651224 49 + . . . . . -1 -1 -1 . . . scaffold493 WUBlastX LINE_RTE-X 36214 36360 48 + . . scaffold493 GLEAN mRNA 33582 40988 0.999595 + . ID=CGI_10007246; C30820 WUBlastX LINE_RTE-X 7930 8193 25 - . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX LINE_RTE-X 20366 20476 30 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-X 770719 770910 47 + . . . . . -1 -1 -1 . . . scaffold39652 WUBlastX LINE_RTE-X 62186 62563 48 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 668997 669365 21 + . . . . . -1 -1 -1 . . . C27792 WUBlastX LINE_RTE-X 2021 2359 46 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_RTE-X 151199 151366 26 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LINE_RTE-X 129240 129494 42 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 999086 999358 50 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_RTE-X 637778 638023 31 + . . . . . -1 -1 -1 . . . scaffold260 WUBlastX LINE_RTE-X 72559 72834 71 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1060734 1061144 37 - . . . . . -1 -1 -1 . . . scaffold1838 WUBlastX LINE_Proto2 364181 364489 55 + . . scaffold1838 GLEAN mRNA 361613 368125 0.631432 + . ID=CGI_10014266; scaffold38360 WUBlastX DNA_Harbinger 53130 53345 54 + . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Pao 64914 65075 26 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_RTE-X 151283 151408 43 - . . scaffold612 GLEAN mRNA 144081 154534 1 + . ID=CGI_10009467; scaffold563 WUBlastX LINE_RTE-X 48535 48783 41 - . . scaffold563 GLEAN mRNA 32054 55715 0.362367 - . ID=CGI_10019817; scaffold563 WUBlastX LINE_RTE-X 48922 48978 25 - . . scaffold563 GLEAN mRNA 32054 55715 0.362367 - . ID=CGI_10019817; scaffold77 WUBlastX LTR_Ngaro 697239 697673 53 + . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LINE_L1-Tx1 95827 96438 32 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1-Tx1 867111 867497 25 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 255259 255510 46 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX DNA_TcMar-Tigge 112898 113059 38 + . . . . . -1 -1 -1 . . . scaffold148 WUBlastX LINE_CR1-L2 41241 41516 42 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LTR_DIRS 320331 320609 36 + . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold601 WUBlastX LTR_Ngaro 581346 581714 23 + . . scaffold601 GLEAN mRNA 573889 582293 1 - . ID=CGI_10026837; scaffold630 WUBlastX LTR_Gypsy 375671 375925 74 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold998 WUBlastX LTR_Gypsy 145931 146152 65 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LTR_Gypsy 558072 558362 41 + . . . . . -1 -1 -1 . . . scaffold852 WUBlastX DNA_IS4EU 126817 127212 90 + . . scaffold852 GLEAN mRNA 121104 128274 1 + . ID=CGI_10012039; scaffold257 WUBlastX LINE_Penelope 1038395 1038649 61 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_L2 205401 205481 27 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Kolobok 293810 294013 62 - . . scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold41228 WUBlastX LINE_RTE-X 7447 7716 65 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LTR_Gypsy 76239 76286 20 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX DNA_hAT-Tip100 7832 7924 30 + . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold34882 WUBlastX LINE_CR1 1228 1518 70 + . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_TcMar-ISRm1 13325 13768 94 + . . scaffold37880 GLEAN mRNA 2966 17075 0.52423 - . ID=CGI_10002532; scaffold1352 WUBlastX DNA_TcMar-Marin 443667 443816 34 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_RTE-X 18087 18407 49 - . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold472 WUBlastX LINE_RTE-X 366948 367250 48 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX DNA_Maverick 301596 301751 87 - . . . . . -1 -1 -1 . . . C34546 WUBlastX LINE_RTE-X 16667 16801 97 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LTR_Gypsy 111362 111445 43 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_L1-Tx1 31850 32098 83 - . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_L1-Tx1 33921 34199 86 - . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_CR1-L2 16485 16973 28 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Ngaro 331780 331950 90 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX LINE_L2 41198 41635 47 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LINE_R2-Hero 29207 29566 62 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX DNA_hAT-Ac 149476 149676 109 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_Harbinger 210540 211031 84 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 316448 316588 95 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_Penelope 169211 169453 65 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1 99417 99566 21 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold38824 WUBlastX LINE_RTE-BovB 21837 22055 34 - . . . . . -1 -1 -1 . . . scaffold33064 WUBlastX LINE_RTE-X 1041 1148 28 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 676652 676846 27 + . . . . . -1 -1 -1 . . . scaffold459 WUBlastX DNA_TcMar-Marin 131821 132150 52 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold222 WUBlastX LINE_L1-Tx1 158549 158884 101 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_CR1 934973 935062 31 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_CR1 245122 245448 87 + . . . . . -1 -1 -1 . . . scaffold268 WUBlastX LINE_CR1-L2 54727 54918 56 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LTR_Ngaro 47773 47919 47 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LTR_Ngaro 48087 48242 58 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LTR_Gypsy 6 260 122 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LTR_DIRS 52879 53358 91 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1 17719 18111 49 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_Penelope 87807 88004 96 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_RTE-X 593633 593806 30 + . . . . . -1 -1 -1 . . . scaffold654 WUBlastX DNA_Maverick 51254 51451 42 - . . . . . -1 -1 -1 . . . scaffold35956 WUBlastX DNA_Sola 960 1070 53 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 88859 89317 39 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_TcMar-Tc1 743833 744057 60 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Copia 7615 7731 29 + . . . . . -1 -1 -1 . . . scaffold1458 WUBlastX LTR_Ngaro 1749 2039 67 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX LTR_Ngaro 110098 110517 38 - . . . . . -1 -1 -1 . . . scaffold35466 WUBlastX DNA_TcMar-Tc1 18115 18411 89 - . . . . . -1 -1 -1 . . . C26394 WUBlastX LINE_L1 3636 3899 101 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L1 791254 791499 90 - . . scaffold1188 GLEAN mRNA 787973 796993 0.991964 + . ID=CGI_10025502; scaffold790 WUBlastX LINE_L1 222214 222879 85 - . . scaffold790 GLEAN mRNA 221752 222957 0.977562 - . ID=CGI_10013171; scaffold150 WUBlastX LINE_L1 188285 188446 21 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_RTE-BovB 372881 373144 86 + . . . . . -1 -1 -1 . . . C33560 WUBlastX LINE_RTE-X 1076 1225 79 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Tc1 28123 28272 31 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold829 WUBlastX DNA_TcMar-Tc2 231830 231994 122 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_Jockey 153721 154392 46 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Gypsy 64047 64325 139 - . . . . . -1 -1 -1 . . . scaffold1893 WUBlastX DNA_Kolobok-IS4 203068 203232 36 - . . scaffold1893 GLEAN mRNA 199713 203993 0.999824 + . ID=CGI_10008861; scaffold1459 WUBlastX DNA_IS4EU 184128 184289 48 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX DNA_IS4EU 184306 184617 81 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_PiggyBac 1263149 1263631 105 - . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold364 WUBlastX DNA_Maverick 319949 320146 105 + . . . . . -1 -1 -1 . . . scaffold40006 WUBlastX DNA_TcMar-Tc1 7513 8358 98 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_L1-Tx1 249968 250327 39 - . . . . . -1 -1 -1 . . . scaffold686 WUBlastX LINE_L1-Tx1 15977 16336 39 - . . scaffold686 GLEAN mRNA 9292 17710 0.993892 - . ID=CGI_10004461; scaffold1535 WUBlastX LINE_L1 12213 12365 82 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_L2 104191 104472 42 + . . . . . -1 -1 -1 . . . scaffold38108 WUBlastX LTR_Ngaro 43128 43583 106 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 322510 322749 46 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold43272 WUBlastX LINE_RTE-X 57719 58165 73 - . . . . . -1 -1 -1 . . . scaffold802 WUBlastX LINE_RTE-X 437489 437899 87 - . . . . . -1 -1 -1 . . . C32838 WUBlastX LTR_Pao 12189 12290 64 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy-Cigr 37921 38124 83 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold44 WUBlastX LTR_Ngaro 243551 244033 55 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy 114580 114798 23 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX DNA_Crypton 10566 10631 22 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LTR_Ngaro 4062 4526 84 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 467785 467961 39 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_Penelope 570681 570914 30 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold1763 WUBlastX LINE_RTE-X 537832 538302 93 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Gypsy 489977 490360 115 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold32282 WUBlastX LINE_CR1 1198 1389 63 + . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_L2 4764 4853 27 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold419 WUBlastX LINE_Jockey 48228 48491 96 - . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold925 WUBlastX LTR_DIRS 438927 439280 21 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold1900 WUBlastX LTR_Gypsy 405133 405942 135 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_Merlin 249263 249838 99 + . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold459 WUBlastX DNA_TcMar-Marin 131821 132090 74 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 132424 132555 29 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold852 WUBlastX LINE_RTE-X 147458 147967 78 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1-Tx1 18614 18658 22 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_Penelope 283495 284217 353 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_Penelope 284397 285200 449 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Gypsy 655314 655616 44 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LTR_Ngaro 562423 563562 700 - . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LTR_DIRS 126014 127759 907 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_DIRS 152324 154069 907 - . . scaffold621 GLEAN mRNA 154047 155567 0.573337 - . ID=CGI_10017674; scaffold621 WUBlastX LTR_DIRS 152324 154069 907 - . . scaffold621 GLEAN mRNA 127381 238205 0.796035 + . ID=CGI_10017672; scaffold43630 WUBlastX LINE_CR1-L2 53250 53810 47 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_DIRS 207264 207587 152 - . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX LINE_I 26447 26725 103 - . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1817 WUBlastX LINE_L1-Tx1 98780 99115 139 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_L1-Tx1 99082 99219 22 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_CR1-L2 18907 19641 214 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold1879 WUBlastX LINE_CR1-L2 120506 121999 737 - . . scaffold1879 GLEAN mRNA 117371 122368 1 - . ID=CGI_10007960; scaffold160 WUBlastX LTR_Gypsy 476041 476244 160 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 476926 477480 37 - . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LINE_RTE-X 425430 427247 435 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Pao 199350 199451 36 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold1551 WUBlastX LTR_Gypsy 105679 106239 118 + . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LTR_Gypsy 181107 181517 162 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1 980446 980619 42 - . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX LINE_L1-Tx1 22062 22535 97 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_CR1-L2 125501 125713 118 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 134784 135920 456 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Pao 33019 34845 556 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-X 342836 344350 726 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_CR1 123139 123732 244 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 30180 30356 31 - . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 41771 42865 603 - . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX LINE_CR1 40963 41166 124 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1698 WUBlastX LINE_L2 211088 211456 70 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_L2 211486 211596 73 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1-Tx1 10248 10445 63 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1330 WUBlastX LTR_Gypsy 140148 140819 500 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok 152739 153188 38 - . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold117 WUBlastX DNA_Kolobok 247390 247662 81 - . . scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold471 WUBlastX LINE_Penelope 367700 368209 152 + . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_TcMar-Pogo 216131 216418 203 + . . scaffold43576 GLEAN mRNA 197837 232524 1 - . ID=CGI_10011134; scaffold4 WUBlastX LINE_L1-Tx1 254888 255193 101 - . . . . . -1 -1 -1 . . . scaffold41772 WUBlastX LTR_Gypsy 99437 99592 88 + . . . . . -1 -1 -1 . . . scaffold33840 WUBlastX LINE_RTE-X 9764 12448 991 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_L2 842641 842886 89 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_L2 842906 843232 35 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_CR1-L2 240836 241060 197 - . . scaffold790 GLEAN mRNA 239122 257283 0.83657 + . ID=CGI_10013172; scaffold208 WUBlastX LINE_L2 172928 173602 130 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_R2-Hero 309980 310453 60 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_R2-Hero 310486 310707 87 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Maverick 171438 171851 165 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 422418 422624 51 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 423114 423656 69 + . . . . . -1 -1 -1 . . . scaffold31954 WUBlastX LINE_RTE-X 540 635 33 - . . . . . -1 -1 -1 . . . scaffold31954 WUBlastX LINE_RTE-X 721 1476 89 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Ngaro 86963 87238 79 - . . . . . -1 -1 -1 . . . C34846 WUBlastX LINE_L1-Tx1 484 978 171 - . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LTR_Gypsy 30032 30340 210 + . . . . . -1 -1 -1 . . . scaffold35336 WUBlastX DNA_IS4EU 8734 9048 152 - . . scaffold35336 GLEAN mRNA 20 10310 0.999999 - . ID=CGI_10001479; scaffold40 WUBlastX LINE_Penelope 6784 6876 45 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-BovB 1279108 1279260 115 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1279275 1279418 45 + . . scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold1125 WUBlastX LINE_RTE-X 150013 150480 162 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_DIRS 32733 33218 88 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_DIRS 33160 33375 84 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L2 64052 64306 99 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1 32777 32941 27 - . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX RC_Helitron 47363 47869 54 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_MuDR 677993 678166 21 + . . scaffold101 GLEAN mRNA 676539 710927 0.888019 - . ID=CGI_10021653; scaffold392 WUBlastX LINE_L1 477551 477799 67 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L1 478497 478616 70 - . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX LTR_Gypsy 81943 82377 367 - . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; C26966 WUBlastX LTR_DIRS 262 918 280 + . . . . . -1 -1 -1 . . . C26966 WUBlastX LTR_DIRS 964 2904 1275 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_DIRS 293781 294041 154 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 325767 326135 109 - . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LTR_DIRS 150825 151052 53 - . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX DNA_Sola 54966 55226 109 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_TcMar-Tc1 245780 246271 37 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_CR1 164193 164588 224 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_CR1-L2 546560 547093 133 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_DIRS 462526 462972 120 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold58 WUBlastX LTR_Gypsy 266675 267898 200 + . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 30676 30975 36 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Maverick 129227 130750 349 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Maverick 130913 131452 126 - . . . . . -1 -1 -1 . . . scaffold640 WUBlastX LTR_Gypsy-Cigr 147806 148894 623 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_L2 91320 91916 140 - . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Harbinger 105351 105629 87 - . . scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold41834 WUBlastX RC_Helitron 45789 46640 148 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 361617 362285 131 - . . . . . -1 -1 -1 . . . scaffold1873 WUBlastX RC_Helitron 54964 55191 59 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 55187 56488 785 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 56649 57350 276 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 57353 58015 437 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 57947 58579 312 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold6 WUBlastX LINE_L2 23048 24364 108 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LTR_Gypsy 34034 34168 34 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1 101901 102314 46 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 403016 404023 544 + . . . . . -1 -1 -1 . . . scaffold1705 WUBlastX LTR_Gypsy 91481 94249 2036 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold971 WUBlastX LTR_Pao 65124 65249 34 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 203159 203278 44 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX DNA_TcMar-Tc1 15622 16164 31 + . . . . . -1 -1 -1 . . . scaffold37760 WUBlastX LTR_Gypsy 11848 15222 2065 + . . scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold1345 WUBlastX LINE_L1-Tx1 415276 419079 1939 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX DNA_P 18786 18881 32 + . . . . . -1 -1 -1 . . . scaffold40744 WUBlastX DNA_Sola 75177 75629 105 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 318050 318109 40 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 290372 290782 34 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX DNA_TcMar-Tc1 560939 561199 139 + . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_RTE-X 120126 120446 78 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_RTE-X 236032 236535 220 - . . scaffold504 GLEAN mRNA 229448 243335 1 - . ID=CGI_10016027; scaffold1084 WUBlastX LTR_DIRS 176613 176870 169 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 177403 177519 30 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 177528 177719 100 + . . scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold38108 WUBlastX LINE_L1-Tx1 38846 39544 115 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 116560 116742 75 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_Kolobok-IS4 19051 20124 132 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_L1-Tx1 21117 21341 79 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_Proto2 197281 197835 62 + . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_Harbinger 25678 26007 162 + . . scaffold37880 GLEAN mRNA 25813 26910 0.999833 + . ID=CGI_10002534; scaffold1687 WUBlastX LINE_RTE-X 5175 5276 102 + . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX LINE_RTE-X 5279 6496 118 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 393698 393784 27 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold38480 WUBlastX LTR_Ngaro 52013 52366 295 - . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 2079 2222 25 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 4589 4726 47 + . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LINE_CR1-L2 440451 441050 203 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_TcMar-Pogo 64057 64179 72 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 561079 561540 50 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 117377 117628 54 - . . . . . -1 -1 -1 . . . C26692 WUBlastX DNA_Harbinger 238 633 239 - . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_hAT-Ac 104638 104850 95 + . . . . . -1 -1 -1 . . . scaffold1256 WUBlastX DNA_Harbinger 83420 83956 266 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 40329 40583 132 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_TcMar-Tc1 188437 188847 232 + . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LTR_Ngaro 21836 22435 366 + . . scaffold36450 GLEAN mRNA 18407 33594 0.503687 - . ID=CGI_10001980; scaffold396 WUBlastX LTR_Ngaro 141886 142620 359 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold520 WUBlastX LTR_Gypsy 62158 62955 383 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX DNA_IS4EU 24908 26416 284 - . . . . . -1 -1 -1 . . . scaffold40080 WUBlastX DNA_Harbinger 65541 66032 393 + . . scaffold40080 GLEAN mRNA 45524 71991 0.583639 - . ID=CGI_10003845; scaffold59 WUBlastX LTR_Ngaro 70640 71383 329 - . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; C28876 WUBlastX LTR_Gypsy 2 787 429 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_Penelope 196800 197978 333 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LTR_Gypsy 33707 34147 86 + . . . . . -1 -1 -1 . . . scaffold41174 WUBlastX LINE_RTE-X 69000 69470 200 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold754 WUBlastX LINE_RTE-X 22145 22315 110 - . . . . . -1 -1 -1 . . . scaffold35970 WUBlastX LTR_Gypsy 27353 27967 463 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_En-Spm 439878 440483 96 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX DNA_En-Spm 439878 440483 96 + . . scaffold1018 GLEAN mRNA 435432 442583 0.542495 - . ID=CGI_10019773; scaffold1554 WUBlastX LTR_Gypsy 370899 371519 236 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy 371617 372102 183 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy 372213 372314 27 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LTR_Gypsy 192469 193500 304 - . . scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold40752 WUBlastX LINE_RTE-BovB 71877 71978 34 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_L2 17987 19150 308 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold1767 WUBlastX DNA_hAT 375745 377310 427 - . . scaffold1767 GLEAN mRNA 373639 384950 0.998695 - . ID=CGI_10016926; scaffold343 WUBlastX DNA_Helitron 614260 615435 442 - . . scaffold343 GLEAN mRNA 606783 616118 0.949663 + . ID=CGI_10021767; scaffold146 WUBlastX LINE_RTE-X 379167 380369 193 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 643693 644496 256 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_Sola 232930 233259 116 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 239249 239578 123 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_L2 438908 439006 22 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_PiggyBac 112294 112734 86 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX DNA_hAT 196199 197140 328 - . . scaffold1423 GLEAN mRNA 194970 198353 1 - . ID=CGI_10025421; scaffold1423 WUBlastX DNA_hAT 198099 198314 45 - . . scaffold1423 GLEAN mRNA 194970 198353 1 - . ID=CGI_10025421; scaffold1772 WUBlastX LTR_DIRS 200293 200550 178 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 202265 202486 28 - . . scaffold1772 GLEAN mRNA 201858 204314 0.999554 - . ID=CGI_10014812; scaffold42656 WUBlastX LINE_RTE-BovB 31249 31860 211 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_RTE-BovB 31821 32051 136 + . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_RTE-BovB 32137 32361 123 + . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_RTE-X 108840 108926 63 + . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold315 WUBlastX LTR_Gypsy 51751 51939 57 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_L1-Tx1 269681 270652 497 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LTR_Gypsy 73920 73949 28 + . . . . . -1 -1 -1 . . . C16036 WUBlastX DNA_IS 3 335 551 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy 70756 71541 309 - . . scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold1164 WUBlastX LINE_RTE-X 9170 10033 75 + . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_RTE-X 113379 114929 329 + . . scaffold504 GLEAN mRNA 112041 122139 0.999999 - . ID=CGI_10016018; scaffold43208 WUBlastX LINE_RTE-X 135228 136346 407 - . . scaffold43208 GLEAN mRNA 124106 156003 0.962351 + . ID=CGI_10009358; C26934 WUBlastX DNA_TcMar-Tc2 3769 4281 541 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_R2-Hero 291926 292180 97 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_R2-Hero 603024 603278 97 + . . . . . -1 -1 -1 . . . scaffold39050 WUBlastX LINE_L1-Tx1 53417 55339 318 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_CR1 330944 331315 164 + . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LTR_Gypsy 25639 26418 320 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold38056 WUBlastX LINE_RTE-X 45954 46112 82 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LINE_L2 708177 708371 83 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy-Cigr 29976 30251 38 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy-Cigr 30736 31782 532 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_RTE-X 643387 644097 76 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Helitron 92760 93074 104 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Helitron 93175 93831 398 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 50675 51361 115 + . . . . . -1 -1 -1 . . . scaffold41572 WUBlastX LINE_RTE-X 109960 111339 537 - . . . . . -1 -1 -1 . . . C34466 WUBlastX LTR_Ngaro 12309 13253 682 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L1 265588 266076 107 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 182049 182564 294 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 266976 267563 218 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L1-Tx1 334071 334124 27 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 69872 70426 87 + . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 46930 47328 211 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy-Cigr 329520 329723 63 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy-Cigr 329723 330070 268 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy-Cigr 330122 330256 61 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy-Cigr 330815 331450 153 - . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX LINE_L1-Tx1 14901 15152 128 - . . . . . -1 -1 -1 . . . scaffold36728 WUBlastX LINE_RTE-X 3852 5267 685 - . . scaffold36728 GLEAN mRNA 432 7345 0.999672 - . ID=CGI_10002097; scaffold1570 WUBlastX LTR_Gypsy 30840 30890 20 + . . . . . -1 -1 -1 . . . scaffold34910 WUBlastX LTR_Gypsy 7801 8196 28 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX DNA_PiggyBac 583982 585556 792 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX LINE_RTE-X 219442 219786 84 - . . . . . -1 -1 -1 . . . C30292 WUBlastX LTR_Ngaro 2 682 368 - . . . . . -1 -1 -1 . . . C30292 WUBlastX LTR_Ngaro 679 1260 406 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy-Cigr 67805 68260 252 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold392 WUBlastX LINE_RTE-X 448312 448623 70 - . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold448 WUBlastX DNA_Maverick 341871 342989 561 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Copia 1943 2014 25 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Copia 10369 10575 55 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold42528 WUBlastX LTR_ERV1 144407 144577 26 + . . scaffold42528 GLEAN mRNA 136401 146936 0.889923 + . ID=CGI_10007210; scaffold41700 WUBlastX DNA_MuDR 19506 19859 47 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LTR_Pao 125231 125389 26 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 1455289 1455972 47 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_CR1 208210 208365 57 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_CR1-L2 388197 388331 32 - . . scaffold583 GLEAN mRNA 365612 390201 0.692695 - . ID=CGI_10023621; scaffold317 WUBlastX LINE_CR1 298142 298381 48 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_CR1 306148 306345 60 + . . . . . -1 -1 -1 . . . scaffold1827 WUBlastX LTR_Gypsy 51112 51237 86 - . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX LTR_Gypsy 50326 50928 34 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LTR_ERV1 87400 87594 55 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 267303 267530 62 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1554 WUBlastX LINE_L2 486123 486359 68 + . . scaffold1554 GLEAN mRNA 475769 486188 0.34149 + . ID=CGI_10017375; scaffold971 WUBlastX LINE_L2 20060 20194 49 - . . scaffold971 GLEAN mRNA 16604 37431 0.450997 + . ID=CGI_10006831; scaffold1036 WUBlastX LTR_Gypsy 598964 599152 73 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold37892 WUBlastX LTR_Gypsy 12338 12448 23 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 131286 131405 21 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 213005 213259 54 + . . . . . -1 -1 -1 . . . scaffold1564 WUBlastX DNA_hAT-Ac 107714 107854 55 - . . scaffold1564 GLEAN mRNA 80148 112523 0.650997 - . ID=CGI_10005199; scaffold250 WUBlastX LTR_Ngaro 30411 30620 35 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L2 137517 137870 25 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_L1 102002 102076 24 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 38338 38574 24 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold937 WUBlastX LINE_Penelope 186 440 39 - . . . . . -1 -1 -1 . . . scaffold32230 WUBlastX DNA_MuDR 1851 2444 32 - . . . . . -1 -1 -1 . . . scaffold1205 WUBlastX LINE_Penelope 40842 40997 71 + . . . . . -1 -1 -1 . . . scaffold1543 WUBlastX LINE_I-Nimb 34026 34577 38 + . . . . . -1 -1 -1 . . . scaffold1080 WUBlastX DNA_En-Spm 264207 264248 28 - . . scaffold1080 GLEAN mRNA 255570 275608 0.591325 - . ID=CGI_10012678; scaffold1746 WUBlastX LINE_Penelope 153175 153534 53 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_Penelope 171578 172120 35 + . . . . . -1 -1 -1 . . . scaffold41550 WUBlastX LINE_RTE-X 24711 24863 24 - . . . . . -1 -1 -1 . . . scaffold1028 WUBlastX LINE_RTE-BovB 29624 29935 52 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 277587 277649 29 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX DNA_Sola 384091 384177 22 - . . scaffold1671 GLEAN mRNA 384061 387810 0.999617 - . ID=CGI_10015157; scaffold1671 WUBlastX DNA_Sola 384603 384824 60 - . . scaffold1671 GLEAN mRNA 384061 387810 0.999617 - . ID=CGI_10015157; scaffold1345 WUBlastX DNA_Sola 349436 349795 54 - . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LTR_Ngaro 127076 127156 33 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_L1-Tx1 133139 133258 34 - . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX LINE_L1-Tx1 61596 61784 71 + . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold40156 WUBlastX LINE_CR1-L2 17810 18022 84 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_CR1-L2 36476 36676 52 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_L2 254699 254866 21 - . . . . . -1 -1 -1 . . . scaffold589 WUBlastX DNA_IS4EU 50424 50738 53 + . . . . . -1 -1 -1 . . . scaffold34302 WUBlastX DNA_IS4EU 14316 14609 69 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX DNA_hAT-Ac 367251 367463 49 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_hAT-Charlie 60639 60872 79 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_Gypsy 373851 374210 69 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX DNA_TcMar-Tc2 279237 279407 65 - . . scaffold117 GLEAN mRNA 279062 289645 0.406248 - . ID=CGI_10016963; scaffold252 WUBlastX DNA_MuDR 93225 93524 56 - . . scaffold252 GLEAN mRNA 89598 102247 0.999676 + . ID=CGI_10010762; scaffold775 WUBlastX DNA_Kolobok-Hyd 115961 116317 44 - . . scaffold775 GLEAN mRNA 115517 116176 0.999137 - . ID=CGI_10006091; scaffold1128 WUBlastX LINE_RTE-BovB 26873 27118 41 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX LINE_RTE-BovB 27184 27336 38 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-BovB 9229 9534 59 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_ERV1 10030 10125 21 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_hAT-Tip100 110523 110867 71 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_IS4EU 3215 3352 20 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 4002 4181 50 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold1345 WUBlastX DNA_Kolobok-IS4 186960 187199 75 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_PiggyBac 192139 192360 95 + . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_RTE-X 271066 271332 57 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 214240 214359 27 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L2 680142 680354 69 + . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold445 WUBlastX DNA_hAT-Tip100 470451 471212 47 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX DNA_Crypton 196580 196780 97 + . . scaffold1769 GLEAN mRNA 194019 207786 0.990769 + . ID=CGI_10009243; scaffold316 WUBlastX LTR_Gypsy 16781 17083 60 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold145 WUBlastX LTR_Gypsy 911970 912653 78 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_hAT-Hobo 87411 87692 23 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_TcMar-Marin 656703 656783 24 - . . scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold1535 WUBlastX LTR_Gypsy 77073 77411 64 + . . . . . -1 -1 -1 . . . C22430 WUBlastX LTR_Gypsy 1462 1584 92 + . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX DNA_Harbinger 94283 94336 21 + . . scaffold1493 GLEAN mRNA 68626 94456 0.99155 + . ID=CGI_10006742; scaffold631 WUBlastX LINE_L1-Tx1 284405 284587 83 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX DNA_P 230901 231191 98 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX DNA_TcMar-Tc2 302835 303251 93 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L2 26321 26629 94 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_Penelope 126824 127081 34 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold41730 WUBlastX DNA_TcMar-Marin 64049 64477 52 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 10889 11185 42 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LTR_Ngaro 198247 198561 73 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LTR_Gypsy 276006 276452 74 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX DNA_TcMar-Tc1 207241 207477 87 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold502 WUBlastX LINE_Penelope 549580 549960 85 - . . . . . -1 -1 -1 . . . scaffold42328 WUBlastX LINE_RTE-X 30699 30887 82 - . . scaffold42328 GLEAN mRNA 29569 31949 0.777732 + . ID=CGI_10006549; scaffold35004 WUBlastX LINE_RTE-X 20135 20323 82 - . . scaffold35004 GLEAN mRNA 18894 21385 1 + . ID=CGI_10001394; scaffold564 WUBlastX LINE_RTE-X 254036 254290 72 + . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LINE_RTE-X 81890 82135 114 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 154251 154430 82 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-X 220114 220533 65 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_RTE-X 163659 164120 61 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 570731 570898 119 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LTR_Gypsy 76980 77288 87 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_L1-Tx1 330726 330809 23 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L2 424183 424353 92 - . . . . . -1 -1 -1 . . . scaffold883 WUBlastX LINE_L2 4635 5213 90 + . . . . . -1 -1 -1 . . . scaffold272 WUBlastX LINE_L2 45446 46153 58 + . . scaffold272 GLEAN mRNA 32744 62954 0.999882 + . ID=CGI_10003057; scaffold1623 WUBlastX DNA_Harbinger 34937 35092 95 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_TcMar-Tc1 260104 260226 41 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_TcMar-Fot1 71130 71252 30 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-BovB 641972 642109 22 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1076280 1076549 37 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold1589 WUBlastX DNA_PiggyBac 244018 244335 121 - . . . . . -1 -1 -1 . . . scaffold1639 WUBlastX DNA_Maverick 118238 118528 45 + . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_Maverick 7533 7874 48 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_RTE-X 214573 215025 89 + . . . . . -1 -1 -1 . . . C29958 WUBlastX LINE_RTE-X 15 905 32 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-X 1464651 1464908 103 - . . . . . -1 -1 -1 . . . C33654 WUBlastX LINE_RTE-X 11840 12361 26 + . . C33654 GLEAN mRNA 2501 14319 0.999996 + . ID=CGI_10001111; scaffold43522 WUBlastX LINE_CR1-L2 109731 109805 55 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Copia 307125 307388 29 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_TcMar-Fot1 288922 289320 138 + . . scaffold1138 GLEAN mRNA 273468 292780 0.221988 + . ID=CGI_10015375; scaffold35238 WUBlastX LINE_L1-Tx1 886 1215 50 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 602328 602759 53 - . . . . . -1 -1 -1 . . . C31130 WUBlastX LINE_RTE-BovB 5984 6106 51 + . . C31130 GLEAN mRNA 1615 7443 0.999998 - . ID=CGI_10000707; scaffold586 WUBlastX LINE_RTE-X 177993 178244 49 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold586 WUBlastX LINE_RTE-X 178244 178459 37 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold63 WUBlastX LINE_L1-Tx1 465588 466046 27 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX DNA_Crypton 10030 10104 26 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX DNA_Crypton 10188 10463 59 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold38360 WUBlastX LTR_Ngaro 37273 37560 107 + . . . . . -1 -1 -1 . . . scaffold647 WUBlastX LTR_Gypsy 24126 24614 79 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX LTR_Gypsy 41893 42111 21 + . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold433 WUBlastX LTR_ERV1 1202838 1203095 38 - . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX LINE_RTE-X 20488 20829 111 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 122015 122290 43 + . . scaffold128 GLEAN mRNA 119795 124529 0.290216 - . ID=CGI_10021509; scaffold40586 WUBlastX LINE_RTE-X 90018 90230 56 + . . . . . -1 -1 -1 . . . scaffold391 WUBlastX LINE_L1-Tx1 6562 6918 138 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1107128 1107304 56 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX DNA_hAT 107063 107755 131 - . . scaffold469 GLEAN mRNA 102901 107728 1 - . ID=CGI_10024668; scaffold453 WUBlastX LINE_L2 314406 314564 24 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LINE_L2 314666 315157 55 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; C26018 WUBlastX LINE_CR1 1816 1959 29 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX LINE_CR1 107545 107688 29 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold591 WUBlastX DNA_PiggyBac 726146 726244 45 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold578 WUBlastX LINE_RTE-X 356348 356506 49 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold1323 WUBlastX LTR_DIRS 1978 2295 158 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_ERVL 829247 829420 26 - . . . . . -1 -1 -1 . . . scaffold806 WUBlastX LTR_DIRS 14221 14901 86 + . . scaffold806 GLEAN mRNA 6658 18169 0.934338 + . ID=CGI_10004919; scaffold408 WUBlastX LTR_Ngaro 277855 278076 94 - . . . . . -1 -1 -1 . . . scaffold34302 WUBlastX DNA_IS4EU 12411 12845 36 + . . scaffold34302 GLEAN mRNA 961 13534 0.696945 + . ID=CGI_10001259; scaffold1896 WUBlastX LINE_L1 433197 433727 72 + . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Ngaro 12742 13080 103 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 430163 430885 318 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 430890 432341 249 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 432363 432539 84 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 299811 300500 153 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LTR_Ngaro 251972 252745 109 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LTR_Gypsy 273052 273534 126 + . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX DNA_Harbinger 39872 40198 154 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_IS4EU 301291 301629 113 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_IS4EU 301607 301753 37 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 93706 93870 83 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold257 WUBlastX LINE_L1 317511 317990 149 + . . scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold1219 WUBlastX LINE_RTE-X 398520 398981 116 + . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX DNA_TcMar-Marin 276392 276973 139 + . . scaffold43818 GLEAN mRNA 259212 278747 0.997869 + . ID=CGI_10012774; scaffold354 WUBlastX LTR_Gypsy 1025196 1025948 183 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 510046 510249 77 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 511594 511977 170 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_Pao 67773 68351 347 - . . . . . -1 -1 -1 . . . scaffold1141 WUBlastX LTR_DIRS 12367 12783 77 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Ngaro 61393 61683 38 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LINE_L2 90182 90259 31 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_RTE-X 306094 306303 119 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Gypsy 159184 161556 995 + . . scaffold1609 GLEAN mRNA 144417 163840 0.83514 - . ID=CGI_10010602; scaffold57 WUBlastX LINE_RTE-X 581783 582064 176 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 582042 582968 309 + . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy-Cigr 101706 102137 138 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Pao 910908 911150 71 + . . . . . -1 -1 -1 . . . scaffold36936 WUBlastX DNA_Crypton 14821 15573 73 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold38576 WUBlastX LINE_I 24698 24835 28 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_Penelope 481104 481271 85 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L1-Tx1 93983 94135 50 + . . . . . -1 -1 -1 . . . scaffold900 WUBlastX LINE_RTE-BovB 2233 3234 1213 + . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_Gypsy 25075 26559 480 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 88332 89816 480 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX LINE_L1-Tx1 54290 54496 68 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_RTE-X 235975 236343 106 - . . scaffold504 GLEAN mRNA 229448 243335 1 - . ID=CGI_10016027; scaffold1024 WUBlastX DNA_TcMar-Tc2 1057577 1058050 110 - . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LTR_DIRS 4523 4723 68 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX DNA_hAT-hATw 195676 197121 34 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX DNA_TcMar-Fot1 78108 78974 179 + . . . . . -1 -1 -1 . . . scaffold39652 WUBlastX LINE_RTE-X 62892 63056 79 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Gypsy 304452 305447 609 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_PiggyBac 609844 609966 87 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold419 WUBlastX LTR_Gypsy 497614 497925 22 - . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LTR_Gypsy 45356 45631 168 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold481 WUBlastX LTR_Ngaro 1183493 1183984 77 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LTR_DIRS 147813 148403 66 - . . scaffold1882 GLEAN mRNA 139430 150969 0.999129 + . ID=CGI_10010506; scaffold43844 WUBlastX DNA_Kolobok-IS4 159940 160071 25 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_Kolobok 344620 344724 35 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Kolobok 586841 587047 84 - . . scaffold1532 GLEAN mRNA 577371 590809 0.942324 - . ID=CGI_10028257; scaffold1532 WUBlastX DNA_Kolobok 587670 587996 88 - . . scaffold1532 GLEAN mRNA 577371 590809 0.942324 - . ID=CGI_10028257; scaffold9 WUBlastX LTR_Ngaro 85220 85378 75 - . . . . . -1 -1 -1 . . . scaffold1503 WUBlastX LINE_Penelope 214629 215093 165 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_DIRS 27625 28212 22 - . . scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold1383 WUBlastX DNA_Harbinger 58142 58381 77 + . . . . . -1 -1 -1 . . . scaffold1383 WUBlastX DNA_Harbinger 58671 58787 108 + . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LTR_Gypsy-Cigr 32174 32902 338 + . . . . . -1 -1 -1 . . . scaffold38376 WUBlastX LTR_Gypsy-Cigr 33799 33936 26 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 28661 29356 212 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_Jockey 361659 361985 139 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LINE_L1 297987 298685 95 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 458855 459286 220 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy 6455 6607 23 - . . scaffold1554 GLEAN mRNA 977 22779 0.529783 + . ID=CGI_10017354; scaffold594 WUBlastX LINE_RTE-X 86779 86967 40 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 712031 712192 114 + . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold165 WUBlastX LTR_Pao 197644 198198 126 - . . scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold42994 WUBlastX LTR_Gypsy 185792 186547 175 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Ngaro 89289 89525 30 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_DIRS 422177 422749 60 + . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_L1 144681 145679 140 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_L1 245399 246397 59 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX LINE_L1 61197 61367 44 - . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold828 WUBlastX LINE_L1-Tx1 21183 22046 90 - . . scaffold828 GLEAN mRNA 14899 24499 0.999674 + . ID=CGI_10007363; scaffold828 WUBlastX LINE_L1-Tx1 21183 22046 90 - . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold53 WUBlastX LTR_Gypsy 33694 34296 187 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 37195 38529 74 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_CR1-L2 1046612 1046809 42 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LTR_DIRS 158749 158892 107 + . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LTR_DIRS 158897 159148 138 + . . . . . -1 -1 -1 . . . scaffold43494 WUBlastX LINE_Penelope 24057 24407 261 - . . . . . -1 -1 -1 . . . scaffold37134 WUBlastX LTR_Gypsy-Cigr 40156 41187 184 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy-Cigr 471816 472673 179 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_TcMar-Tc1 458420 458935 138 - . . scaffold1307 GLEAN mRNA 450719 462062 0.999431 - . ID=CGI_10023761; scaffold626 WUBlastX LTR_Gypsy 292329 292484 85 - . . . . . -1 -1 -1 . . . scaffold441 WUBlastX LTR_DIRS 46881 48107 76 - . . . . . -1 -1 -1 . . . scaffold38510 WUBlastX DNA_Sola 29630 29857 41 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 31622 32182 56 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold552 WUBlastX LINE_RTE-X 32409 32702 142 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 216770 217420 205 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_L1-Tx1 184027 184194 34 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1 436341 437264 184 - . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_L2 2941 3387 49 - . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX LINE_RTE-X 61052 61171 28 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_RTE-X 175448 175777 164 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_RTE-X 176529 176876 77 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L2 71457 71657 32 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX RC_Helitron 707463 708200 289 - . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 374905 375690 185 - . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1-Tx1 15346 16080 114 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold189 WUBlastX LINE_L1 404045 404371 73 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX DNA_hAT-hATw 124348 125706 290 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 440258 440983 240 + . . . . . -1 -1 -1 . . . C25748 WUBlastX LTR_DIRS 1829 2029 46 + . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX LINE_CR1-L2 1383 1478 35 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 1310613 1311026 170 - . . . . . -1 -1 -1 . . . scaffold38194 WUBlastX LTR_Gypsy 45344 47329 296 + . . . . . -1 -1 -1 . . . C29848 WUBlastX DNA_PiggyBac 6357 7112 316 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L2 1327159 1327317 30 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_L2 74496 74729 59 + . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LTR_Gypsy 38547 39242 233 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Ngaro 305345 305812 182 - . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX DNA_TcMar-Tc1 154013 154654 259 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_CR1 83227 83349 88 + . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_R2-Hero 223304 224185 143 - . . . . . -1 -1 -1 . . . scaffold1203 WUBlastX LINE_RTE-X 145087 145830 149 + . . . . . -1 -1 -1 . . . C23484 WUBlastX DNA_IS4EU 625 1611 171 - . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_IS4EU 227335 228321 171 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 648739 649026 79 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1-Tx1 189082 189210 22 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_Harbinger 101193 101393 149 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy 370899 371387 269 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L2 194177 194683 354 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 643146 643226 45 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Gypsy-Cigr 6034 7548 328 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold760 WUBlastX LTR_Gypsy 28261 28782 107 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 910916 911068 117 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LINE_L1-Tx1 461552 462628 169 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 379407 380381 203 + . . . . . -1 -1 -1 . . . C34174 WUBlastX LTR_Ngaro 3294 4232 321 + . . C34174 GLEAN mRNA 745 7629 0.544712 - . ID=CGI_10001232; scaffold39064 WUBlastX LINE_RTE-X 62824 63909 224 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX DNA_TcMar-Tc1 495015 496028 394 + . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_IS4EU 28500 28679 36 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold128 WUBlastX LINE_RTE-X 190312 191025 190 + . . . . . -1 -1 -1 . . . scaffold38152 WUBlastX LTR_Gypsy 50951 51013 30 - . . . . . -1 -1 -1 . . . C32228 WUBlastX LTR_Copia 3842 4366 122 + . . . . . -1 -1 -1 . . . scaffold262 WUBlastX LINE_RTE-X 19379 20752 260 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 76356 77450 116 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX DNA_IS4EU 43036 43983 218 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 43979 44179 111 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 44176 44361 141 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold858 WUBlastX LINE_RTE-X 6643 7284 65 - . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_L2 76181 76681 279 + . . scaffold1222 GLEAN mRNA 68719 82791 0.648135 - . ID=CGI_10016236; scaffold1222 WUBlastX LINE_L2 76707 77096 221 + . . scaffold1222 GLEAN mRNA 68719 82791 0.648135 - . ID=CGI_10016236; scaffold1018 WUBlastX LTR_Gypsy 392471 392995 172 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 709290 709373 52 + . . . . . -1 -1 -1 . . . C27412 WUBlastX LINE_CR1 3068 3310 103 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Kolobok 142774 142929 67 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Kolobok 143333 143536 96 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 143646 143834 128 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 144023 144937 160 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold1352 WUBlastX LINE_L1-Tx1 334045 334632 347 - . . . . . -1 -1 -1 . . . scaffold827 WUBlastX LINE_L1-Tx1 30802 31344 308 + . . . . . -1 -1 -1 . . . scaffold827 WUBlastX LINE_L1-Tx1 31349 32503 185 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy 353439 354350 335 - . . scaffold85 GLEAN mRNA 332841 357883 0.849566 - . ID=CGI_10020703; scaffold271 WUBlastX LTR_Pao 943560 943628 32 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 297135 297989 759 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_CR1-L2 511617 511838 90 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold34610 WUBlastX LTR_Gypsy 4 174 116 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Pao 143594 144169 482 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX RC_Helitron 479931 481550 789 - . . scaffold599 GLEAN mRNA 478283 491770 0.99915 - . ID=CGI_10021727; scaffold34106 WUBlastX LTR_DIRS 12219 12440 157 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold271 WUBlastX LINE_CR1-L2 476956 477714 273 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold4 WUBlastX LINE_RTE-X 665411 665779 191 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-X 419243 420682 686 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_En-Spm 387832 388113 110 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Pao 160489 161055 105 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-BovB 445315 447387 351 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 58401 58622 26 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX RC_Helitron 39199 40794 223 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_En-Spm 120966 122987 748 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Gypsy-Cigr 26858 27433 457 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_DIRS 631862 632212 259 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_DIRS 633874 634107 107 + . . . . . -1 -1 -1 . . . C25486 WUBlastX LTR_Gypsy 45 551 319 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_L2 120327 120371 37 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_CR1 369918 370700 26 - . . scaffold44 GLEAN mRNA 369681 374648 1 - . ID=CGI_10016838; scaffold801 WUBlastX DNA_hAT 103021 103335 77 + . . scaffold801 GLEAN mRNA 99805 103731 1 + . ID=CGI_10024064; scaffold1024 WUBlastX LTR_Ngaro 1674199 1674477 31 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Pao 649103 649390 49 + . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LTR_Ngaro 147941 148159 62 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_DIRS 518426 518731 22 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_DIRS 156185 156337 24 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX DNA_hAT-hATw 382427 382597 49 - . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX DNA_Kolobok-IS4 56623 57111 83 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 172316 172468 22 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_I 34394 34648 30 + . . . . . -1 -1 -1 . . . scaffold40910 WUBlastX LINE_I 25423 25554 37 + . . scaffold40910 GLEAN mRNA 21906 27180 0.999948 + . ID=CGI_10004544; scaffold40910 WUBlastX LINE_I 25798 25929 26 + . . scaffold40910 GLEAN mRNA 21906 27180 0.999948 + . ID=CGI_10004544; scaffold87 WUBlastX LINE_Tad1? 41297 41500 40 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LTR_Gypsy 223331 223855 70 - . . scaffold43634 GLEAN mRNA 223292 224107 0.823589 - . ID=CGI_10011538; scaffold1324 WUBlastX DNA_Harbinger 3074 3355 36 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX DNA_Harbinger 204522 204677 64 - . . . . . -1 -1 -1 . . . scaffold1615 WUBlastX DNA_Harbinger 1539 1700 66 - . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX DNA_Harbinger 61600 61734 40 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L1 874086 874349 68 - . . . . . -1 -1 -1 . . . scaffold1299 WUBlastX LINE_L1 138494 138661 60 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold267 WUBlastX DNA_Kolobok 492389 492589 59 + . . scaffold267 GLEAN mRNA 492434 492911 1 + . ID=CGI_10018313; scaffold675 WUBlastX DNA_TcMar-Marin 115942 116193 46 - . . scaffold675 GLEAN mRNA 109657 116904 0.999611 - . ID=CGI_10017856; scaffold1637 WUBlastX DNA_TcMar-Marin 185799 186137 55 + . . scaffold1637 GLEAN mRNA 146684 191770 0.63167 - . ID=CGI_10010279; scaffold1686 WUBlastX DNA_MuDR 26362 26532 54 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX DNA_MuDR 71238 71705 51 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_RTE-X 818142 818291 49 - . . . . . -1 -1 -1 . . . scaffold1585 WUBlastX LINE_RTE-X 7399 7662 52 + . . scaffold1585 GLEAN mRNA 1530 11079 0.999999 - . ID=CGI_10012582; scaffold606 WUBlastX LINE_RTE-X 44821 44955 61 - . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LINE_RTE-BovB 37375 37608 61 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 319726 319959 47 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_RTE-X 274954 275124 77 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LINE_RTE-X 76257 76436 69 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_RTE-X 161934 162407 27 - . . . . . -1 -1 -1 . . . scaffold41806 WUBlastX LINE_RTE-X 63752 64162 28 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_RTE-X 470079 470198 30 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 149061 149246 72 + . . . . . -1 -1 -1 . . . scaffold36808 WUBlastX LINE_RTE-X 35346 35549 29 + . . scaffold36808 GLEAN mRNA 30018 36587 1 - . ID=CGI_10002147; scaffold685 WUBlastX LINE_RTE-X 41270 41380 22 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 993168 993668 71 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_Sola 158678 158839 58 - . . scaffold1832 GLEAN mRNA 158325 163224 0.931923 + . ID=CGI_10018467; scaffold313 WUBlastX LTR_Ngaro 647317 647730 27 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Copia 826302 826559 23 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_hAT-Tip100 137403 137642 43 + . . . . . -1 -1 -1 . . . C28456 WUBlastX DNA_TcMar-Tc1 1869 2156 45 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1-Tx1 166841 167062 23 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_L1-Tx1 529592 529876 46 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_L1-Tx1 414287 414547 48 + . . . . . -1 -1 -1 . . . scaffold42766 WUBlastX LINE_L1-Tx1 186338 186553 22 + . . . . . -1 -1 -1 . . . scaffold42766 WUBlastX LINE_L1-Tx1 186586 186735 40 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX DNA_Zator 146133 146234 36 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_RTE-BovB 7069 7617 29 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LINE_L2 86161 86442 27 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_CR1 298974 299084 39 - . . . . . -1 -1 -1 . . . scaffold35884 WUBlastX LINE_CR1-L2 2292 2585 34 - . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LINE_CR1-L2 84623 84721 23 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 322422 322586 44 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LTR_Gypsy 68735 68839 67 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 709356 709613 76 + . . . . . -1 -1 -1 . . . C32270 WUBlastX LINE_I 3250 3612 40 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX DNA_TcMar-Marin 280870 281064 54 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Kolobok-IS4 189826 190248 35 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L1 288432 288557 44 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L1 288581 288682 31 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_L1 238258 238659 60 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 215153 215452 43 - . . . . . -1 -1 -1 . . . scaffold43868 WUBlastX LINE_CR1-L2 92659 93060 52 - . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 22912 23256 79 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold29142 WUBlastX LTR_Gypsy 782 1489 100 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 427576 427806 80 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 114491 115165 77 + . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Gypsy 89363 89839 32 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Harbinger 401296 401508 82 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX DNA_Helitron 477478 477579 50 + . . . . . -1 -1 -1 . . . scaffold41766 WUBlastX LTR_Gypsy 32111 32359 36 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold1706 WUBlastX DNA_Kolobok-Hyd 3479 3886 47 - . . scaffold1706 GLEAN mRNA 656 3862 1 - . ID=CGI_10003661; scaffold1639 WUBlastX DNA_TcMar-Tc1 37452 37826 106 + . . scaffold1639 GLEAN mRNA 27466 42582 0.863535 + . ID=CGI_10005437; C33534 WUBlastX LINE_L2 9585 10082 81 + . . . . . -1 -1 -1 . . . scaffold1115 WUBlastX LTR_Ngaro 120993 121355 71 + . . . . . -1 -1 -1 . . . scaffold36598 WUBlastX LTR_Ngaro 31321 31551 77 - . . . . . -1 -1 -1 . . . C33408 WUBlastX DNA_Sola 4521 4841 36 - . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX DNA_Sola 21322 21555 78 + . . . . . -1 -1 -1 . . . C29982 WUBlastX LTR_ERV1 6736 6792 21 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_Ngaro 648170 648412 24 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold1179 WUBlastX LTR_Gypsy 1295044 1295274 55 + . . scaffold1179 GLEAN mRNA 1286843 1305972 0.887369 + . ID=CGI_10027419; scaffold41346 WUBlastX DNA_Helitron 33362 33574 90 - . . scaffold41346 GLEAN mRNA 32052 37243 0.990251 - . ID=CGI_10004999; scaffold53 WUBlastX LINE_RTE-X 1179964 1180233 27 - . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LINE_RTE-X 170132 170557 40 - . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 2028 2207 30 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_Gypsy-Cigr 373857 374150 96 - . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX LINE_CR1 134168 134359 35 + . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Gypsy 89528 89842 95 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LTR_DIRS 144860 145120 86 - . . . . . -1 -1 -1 . . . scaffold31308 WUBlastX LTR_Ngaro 8538 8960 53 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX DNA_hAT-Ac 249871 249999 30 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LTR_Gypsy 665028 665183 85 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold1267 WUBlastX DNA_TcMar-Tc1 258204 258260 56 - . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX LINE_L1 22061 22297 63 + . . . . . -1 -1 -1 . . . scaffold41228 WUBlastX LINE_RTE-X 6995 7180 27 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX DNA_TcMar-Tc2 337817 338119 113 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L1-Tx1 136670 136855 57 + . . . . . -1 -1 -1 . . . scaffold41136 WUBlastX LINE_L1-Tx1 89388 89807 22 - . . . . . -1 -1 -1 . . . C22570 WUBlastX LINE_L1-Tx1 2 457 35 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_CR1-L2 54137 54493 79 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold43664 WUBlastX LTR_Copia 233469 233669 38 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_MuDR 579436 579603 82 + . . scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; C22518 WUBlastX LINE_L2 1314 1868 78 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 36015 36191 64 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold1066 WUBlastX DNA_Harbinger 90352 90606 33 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX DNA_TcMar-Tc1 79381 79887 89 - . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LINE_RTE-X 184901 185275 63 + . . . . . -1 -1 -1 . . . C25616 WUBlastX DNA_Maverick 2 313 82 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_RTE-X 54358 54531 68 + . . scaffold113 GLEAN mRNA 53720 57757 0.859957 + . ID=CGI_10021283; scaffold317 WUBlastX LTR_Gypsy 115719 115847 24 + . . scaffold317 GLEAN mRNA 115633 116375 0.989111 + . ID=CGI_10019344; scaffold71 WUBlastX LTR_Gypsy 269831 269959 24 + . . scaffold71 GLEAN mRNA 268268 281594 0.588785 + . ID=CGI_10015059; scaffold1758 WUBlastX LTR_Gypsy 125338 125466 24 + . . scaffold1758 GLEAN mRNA 124882 125994 0.791435 + . ID=CGI_10007063; scaffold33820 WUBlastX DNA_Sola 8486 8917 59 + . . . . . -1 -1 -1 . . . scaffold1422 WUBlastX DNA_TcMar-Tc1 64859 65587 20 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Copia 659478 659606 22 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LTR_Gypsy 175441 176451 32 + . . scaffold1138 GLEAN mRNA 174466 179423 0.789389 + . ID=CGI_10015372; scaffold583 WUBlastX LTR_Gypsy 30151 30693 103 + . . scaffold583 GLEAN mRNA 11252 30786 0.538908 + . ID=CGI_10023603; scaffold40282 WUBlastX LTR_Gypsy 30547 30954 115 + . . scaffold40282 GLEAN mRNA 26181 34807 1 + . ID=CGI_10004001; scaffold1831 WUBlastX LINE_I 37682 37810 29 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold13 WUBlastX LINE_Penelope 307094 307441 54 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-RTE 590227 590355 22 + . . scaffold237 GLEAN mRNA 590107 590598 0.776648 + . ID=CGI_10021587; scaffold419 WUBlastX LINE_RTE-X 1464429 1464914 86 - . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LINE_RTE-X 41276 41476 75 + . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX DNA_TcMar-Tc1 79381 80343 87 - . . . . . -1 -1 -1 . . . scaffold34350 WUBlastX LTR_Gypsy-Cigr 8508 8831 118 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_Crypton 695509 695817 104 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_Crypton 696497 696646 22 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Ngaro 4154 4612 36 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Gypsy-Cigr 270294 270842 120 + . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold1241 WUBlastX DNA_hAT-hATw 126845 127672 76 + . . . . . -1 -1 -1 . . . scaffold1537 WUBlastX LINE_Penelope 8454 8597 20 + . . scaffold1537 GLEAN mRNA 2 9370 0.999999 + . ID=CGI_10001150; scaffold1537 WUBlastX LINE_Penelope 9039 9095 36 + . . scaffold1537 GLEAN mRNA 2 9370 0.999999 + . ID=CGI_10001150; scaffold1797 WUBlastX LINE_RTE-X 21775 21987 36 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LINE_RTE-X 24730 24972 88 - . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_RTE-X 242929 243336 90 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_Crypton 1325309 1325935 99 - . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX DNA_Crypton 3970 4764 49 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Harbinger 94552 94836 26 + . . scaffold267 GLEAN mRNA 90014 96204 0.998586 - . ID=CGI_10018285; scaffold99 WUBlastX LINE_L1-Tx1 257849 258244 24 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_Penelope 513412 513699 130 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold1062 WUBlastX LINE_RTE-X 130459 130857 72 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_PiggyBac 251393 251845 117 - . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold453 WUBlastX DNA_PiggyBac 358086 358226 31 + . . scaffold453 GLEAN mRNA 346906 361240 0.116749 + . ID=CGI_10015050; scaffold298 WUBlastX LTR_Ngaro 299124 299459 92 + . . scaffold298 GLEAN mRNA 297759 312412 0.999402 - . ID=CGI_10018824; scaffold169 WUBlastX LINE_L1-Tx1 772390 773067 54 - . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L1-Tx1 95140 95466 64 - . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_L1-Tx1 81920 82477 47 - . . scaffold828 GLEAN mRNA 78778 92221 0.986584 - . ID=CGI_10007365; scaffold983 WUBlastX LTR_Copia 76330 76755 37 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_IS4EU 225109 225396 42 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_IS4EU 395853 396140 42 + . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold962 WUBlastX DNA_IS4EU 189826 190176 54 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_L1-Tx1 156667 157122 98 + . . . . . -1 -1 -1 . . . C27694 WUBlastX DNA_Maverick 2152 2481 137 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 773453 773947 69 - . . scaffold1189 GLEAN mRNA 763568 774596 0.392072 + . ID=CGI_10023832; scaffold327 WUBlastX LINE_RTE-X 37638 38036 33 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_Sola 450757 450993 78 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_Sola 43786 43941 38 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Tc1 28909 29196 152 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold1688 WUBlastX LTR_Gypsy-Cigr 71091 72830 919 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L1 23497 24495 401 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LINE_L2 176511 176621 41 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 147246 147779 314 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 1832023 1832184 74 - . . . . . -1 -1 -1 . . . scaffold38576 WUBlastX LINE_CR1 24820 24996 24 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 5741 5788 22 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 375715 375888 62 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_En-Spm 3361 3723 129 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_IS4EU 137018 137065 29 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_DIRS 621812 622489 103 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L1-Tx1 284438 284551 89 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L1-Tx1 284536 284847 93 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1 188327 188863 117 - . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_RTE-X 10632 11174 41 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold40586 WUBlastX LINE_RTE-X 91452 91637 38 + . . . . . -1 -1 -1 . . . scaffold523 WUBlastX LTR_Gypsy 810 1034 181 - . . . . . -1 -1 -1 . . . scaffold38194 WUBlastX LTR_Gypsy 49553 49807 175 + . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX LINE_RTE-X 219806 220126 33 - . . scaffold1210 GLEAN mRNA 219854 220240 0.999999 - . ID=CGI_10014605; scaffold20 WUBlastX LTR_Gypsy 680794 681735 255 + . . . . . -1 -1 -1 . . . C10191 WUBlastX LTR_Copia 2 157 174 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 591213 591335 21 + . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_CR1 216933 217328 109 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; C28958 WUBlastX LTR_Gypsy 2968 3714 163 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1 28388 28597 51 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_PiggyBac 491897 492511 151 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_RTE-X 529286 531274 897 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Maverick 276459 276572 35 - . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_RTE-X 79109 80005 587 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_RTE-X 80007 80888 345 + . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX LINE_L2 132349 133071 129 + . . scaffold43150 GLEAN mRNA 121679 138901 1 + . ID=CGI_10009035; scaffold1345 WUBlastX LINE_L2 419390 420112 130 - . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Gypsy 14792 15538 131 - . . scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14792 15538 131 - . . scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold1272 WUBlastX LTR_Ngaro 38761 38832 39 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LTR_Ngaro 38919 39143 110 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_Harbinger 99876 100151 157 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX DNA_Kolobok 3420 3842 140 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 568905 569423 164 - . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_RTE-X 65988 66047 31 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_RTE-X 947185 947301 66 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 218394 219257 210 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 698038 698628 214 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_TcMar-Tc1 270818 271027 150 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 49412 49897 75 + . . . . . -1 -1 -1 . . . C34110 WUBlastX DNA_IS4EU 13670 14869 95 - . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; scaffold1707 WUBlastX DNA_hAT-Tip100 100062 100376 128 + . . . . . -1 -1 -1 . . . scaffold17 WUBlastX LTR_Ngaro 4881 5189 171 - . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_RTE-BovB 1563 1736 74 + . . . . . -1 -1 -1 . . . scaffold41954 WUBlastX LINE_RTE-BovB 1733 1939 116 + . . . . . -1 -1 -1 . . . scaffold42598 WUBlastX LINE_RTE-BovB 161552 161743 66 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1-Tx1 4600 4890 35 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1-Tx1 4893 5402 146 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1-Tx1 5428 6363 389 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_L1-Tx1 6426 7322 553 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy-Cigr 226578 227183 322 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy-Cigr 227560 229410 712 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_L2 51460 51555 28 - . . . . . -1 -1 -1 . . . scaffold148 WUBlastX LTR_Gypsy-Cigr 18557 18817 197 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Gypsy 654370 654912 163 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 752574 753161 195 - . . scaffold20 GLEAN mRNA 752421 753041 1 - . ID=CGI_10023596; scaffold1132 WUBlastX DNA_hAT-hATx 790131 790799 50 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX RC_Helitron 535937 536680 87 + . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_Harbinger 182075 182158 25 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L1-Tx1 186312 186602 94 + . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LINE_RTE-BovB 81175 81942 125 + . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LTR_Ngaro 78776 79288 182 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L1-Tx1 564363 565142 141 + . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LTR_Gypsy 30752 32377 1073 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_CR1-L2 265481 265552 52 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_CR1 67883 68404 155 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_DIRS 484713 485228 162 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy 342351 342599 120 - . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX LINE_L1 11083 11148 35 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LINE_L2 96865 97284 202 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_RTE-BovB 119981 120100 42 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 266060 266884 132 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX LTR_Gypsy-Troyk 203713 204186 144 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_L1 362710 366450 1235 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 368476 369414 697 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX LTR_Pao 3543 4478 67 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 32195 32395 104 - . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold1726 WUBlastX LINE_RTE-X 278815 279132 77 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX DNA_Sola 29440 29679 85 - . . . . . -1 -1 -1 . . . scaffold612 WUBlastX DNA_Sola 29826 30689 106 - . . . . . -1 -1 -1 . . . scaffold1652 WUBlastX RC_Helitron 231487 232071 56 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold709 WUBlastX DNA_En-Spm 545074 546123 104 + . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX LINE_RTE-X 32540 33430 132 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_TcMar-Tc1 24201 24401 92 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_TcMar-Tc1 24616 24720 27 + . . . . . -1 -1 -1 . . . scaffold40 WUBlastX LINE_Penelope 8164 8346 43 + . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX DNA_Crypton 99915 100424 144 - . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX DNA_Crypton 100737 100940 75 - . . . . . -1 -1 -1 . . . scaffold35286 WUBlastX LINE_Proto2 6299 7750 158 + . . scaffold35286 GLEAN mRNA 5633 23296 1 + . ID=CGI_10001451; scaffold574 WUBlastX LTR_Pao 54164 54838 201 + . . . . . -1 -1 -1 . . . scaffold1511 WUBlastX DNA_Crypton 169876 171111 104 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LINE_L1 47803 48192 197 + . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold1705 WUBlastX LTR_Gypsy 91376 94810 1925 - . . scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold1423 WUBlastX LINE_RTE-BovB 348030 348911 616 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_IS4EU 171355 171456 53 + . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L1 5412 5567 32 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy 307966 310728 1937 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_CR1-L2 26317 26481 88 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_CR1 49593 49808 30 + . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_CR1 49873 50181 213 + . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX LTR_Pao 3266 4324 169 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1 293972 294526 94 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1-Tx1 602971 603504 42 + . . . . . -1 -1 -1 . . . scaffold506 WUBlastX LINE_L2 466699 467442 249 + . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX LINE_CR1 238086 238598 143 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold42866 WUBlastX LTR_Pao 5097 5465 314 - . . scaffold42866 GLEAN mRNA 4204 26490 0.99967 + . ID=CGI_10007989; scaffold678 WUBlastX LINE_L2 387201 388178 279 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_Harbinger 10074 10193 126 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_Harbinger 10790 11158 128 - . . scaffold483 GLEAN mRNA 10460 12838 0.823526 + . ID=CGI_10007746; scaffold1819 WUBlastX LTR_Gypsy 73053 73145 38 - . . . . . -1 -1 -1 . . . scaffold42144 WUBlastX DNA_TcMar-Tc1 108436 109431 244 + . . scaffold42144 GLEAN mRNA 104437 125325 0.993907 - . ID=CGI_10006248; scaffold1245 WUBlastX LINE_RTE-X 97411 97824 141 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 111750 112241 138 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_IS4EU 490093 490719 318 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 136712 137749 133 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold973 WUBlastX LTR_Gypsy-Cigr 319297 319590 208 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_DIRS 487621 487845 134 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 204869 205249 150 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 514470 514643 26 - . . . . . -1 -1 -1 . . . scaffold881 WUBlastX LTR_Pao 24 1022 321 + . . . . . -1 -1 -1 . . . scaffold37680 WUBlastX DNA_Harbinger 21340 21573 180 - . . . . . -1 -1 -1 . . . scaffold37680 WUBlastX DNA_Harbinger 21575 21958 145 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_Harbinger 138128 138277 55 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 138760 139170 99 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold1583 WUBlastX LINE_RTE-X 323471 323725 84 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold591 WUBlastX DNA_PiggyBac 535764 535886 21 - . . . . . -1 -1 -1 . . . scaffold1057 WUBlastX LINE_L1-Tx1 2 1231 96 + . . . . . -1 -1 -1 . . . scaffold40100 WUBlastX LINE_CR1 5593 6201 239 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-BovB 109139 109213 24 - . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L1-Tx1 171373 171969 337 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 26899 27153 177 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_L1-Tx1 10544 10924 67 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_RTE-X 99845 100018 23 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_L1 685901 686065 28 + . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_Ngaro 196546 196887 86 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 197444 197848 120 - . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold38122 WUBlastX LTR_Pao 47609 47785 70 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX DNA_IS4EU 57380 57484 73 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX DNA_IS4EU 57483 58043 349 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_TcMar-Marin 1060562 1060882 99 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy-Cigr 799272 799781 353 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold337 WUBlastX LINE_CR1 441437 441628 61 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok 377486 377836 58 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok 378273 378968 232 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_L1 55148 55201 31 + . . . . . -1 -1 -1 . . . C31156 WUBlastX DNA_hAT 2280 2453 26 - . . . . . -1 -1 -1 . . . scaffold37816 WUBlastX LTR_Ngaro 31076 31300 136 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_RTE-X 190051 190179 49 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_DIRS 16919 17413 182 + . . . . . -1 -1 -1 . . . scaffold35636 WUBlastX LTR_DIRS 17523 18107 222 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_CR1 56560 57678 239 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_RTE-X 61891 63216 381 - . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX LINE_L1-Tx1 53903 54370 103 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Gypsy 1042715 1042828 27 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_L1-Tx1 362187 362516 44 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_L1-Tx1 362698 363468 236 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_Sola 73673 74332 352 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LINE_L1-Tx1 109053 109517 77 + . . . . . -1 -1 -1 . . . scaffold42726 WUBlastX DNA_TcMar-Tc1 160270 160692 208 + . . . . . -1 -1 -1 . . . scaffold42726 WUBlastX DNA_TcMar-Tc1 160743 160997 114 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Gypsy 1203092 1203964 394 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Gypsy 1204556 1204816 140 - . . . . . -1 -1 -1 . . . scaffold1052 WUBlastX LTR_DIRS 34967 35851 388 - . . scaffold1052 GLEAN mRNA 1917 38966 0.980203 - . ID=CGI_10005467; C31910 WUBlastX LTR_DIRS 9512 10396 388 - . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LTR_DIRS 242587 243471 391 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_TcMar-Tc1 76096 76530 219 - . . scaffold286 GLEAN mRNA 70101 79780 0.990881 + . ID=CGI_10015958; scaffold41206 WUBlastX DNA_Zator 46095 46358 27 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1-Tx1 295358 295636 287 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1-Tx1 295633 296322 211 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 202430 202834 230 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold667 WUBlastX LTR_Gypsy 90843 91112 113 - . . . . . -1 -1 -1 . . . C28510 WUBlastX DNA_Sola 2820 3170 91 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1-Tx1 24784 26139 482 - . . . . . -1 -1 -1 . . . scaffold38274 WUBlastX LINE_RTE-X 11080 11724 165 - . . . . . -1 -1 -1 . . . C21258 WUBlastX LTR_Copia 6 554 645 + . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LTR_Gypsy 31614 32096 472 + . . . . . -1 -1 -1 . . . scaffold39500 WUBlastX LTR_Gypsy 21910 22161 65 - . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_Kolobok-IS4 150503 151498 636 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX DNA_TcMar-Fot1 67548 68507 640 + . . . . . -1 -1 -1 . . . scaffold1140 WUBlastX LINE_Penelope 55 1659 513 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_CR1-L2 17784 18011 84 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold43 WUBlastX DNA_IS4EU 513 722 69 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok-IS4 227497 227724 27 - . . scaffold86 GLEAN mRNA 226150 228665 0.977065 - . ID=CGI_10028143; scaffold1535 WUBlastX DNA_Maverick 100581 101024 135 - . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 17643 18575 41 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_RTE-X 679107 679595 299 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Gypsy 112422 112535 26 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold42896 WUBlastX LINE_L1-Tx1 126729 126941 48 + . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX DNA_Sola 188827 189789 284 + . . scaffold1440 GLEAN mRNA 175302 192419 0.333291 + . ID=CGI_10008358; scaffold1440 WUBlastX DNA_Sola 189782 190339 361 + . . scaffold1440 GLEAN mRNA 175302 192419 0.333291 + . ID=CGI_10008358; C33024 WUBlastX LINE_L1-Tx1 369 545 62 - . . . . . -1 -1 -1 . . . C33024 WUBlastX LINE_L1-Tx1 524 2341 459 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Ngaro 247756 247884 80 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LINE_RTE-X 491303 491494 51 - . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LINE_Penelope 208520 209572 601 + . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold415 WUBlastX LTR_Gypsy 74239 74775 40 - . . . . . -1 -1 -1 . . . scaffold912 WUBlastX LINE_RTE-X 50505 51026 149 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 700153 700308 20 - . . . . . -1 -1 -1 . . . scaffold665 WUBlastX LINE_L1-Tx1 30974 32881 592 - . . . . . -1 -1 -1 . . . scaffold40442 WUBlastX LINE_L1-Tx1 73296 75053 695 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 145620 145982 225 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 146660 147265 228 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 148447 148581 26 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LTR_Gypsy 537827 539248 894 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 33692 34321 228 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_Penelope 282035 282775 407 - . . . . . -1 -1 -1 . . . C24148 WUBlastX LINE_CR1 710 766 26 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LINE_CR1-L2 246273 246311 25 + . . . . . -1 -1 -1 . . . scaffold35974 WUBlastX LINE_L2 19029 19979 21 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_L2 31501 31710 31 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX DNA_Academ 104057 104257 81 + . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_hAT-Tip100 25875 25946 27 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_Pao 897205 897420 74 - . . . . . -1 -1 -1 . . . C32838 WUBlastX LTR_Pao 12325 12552 40 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 9405 9488 66 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Gypsy 23952 24458 26 + . . . . . -1 -1 -1 . . . scaffold38354 WUBlastX LTR_Gypsy 4571 4714 69 + . . . . . -1 -1 -1 . . . scaffold868 WUBlastX LTR_Gypsy 148551 148751 87 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Gypsy 279013 279270 66 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 66421 66636 35 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Ngaro 400598 400858 40 - . . . . . -1 -1 -1 . . . scaffold32546 WUBlastX LINE_L2 9428 10033 51 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1147078 1147206 44 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 500928 501503 22 - . . scaffold363 GLEAN mRNA 500751 501623 1 - . ID=CGI_10019310; scaffold1093 WUBlastX LINE_Penelope 404434 404619 33 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold37876 WUBlastX LINE_Penelope 37319 37699 32 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_MuDR 308211 308510 29 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_ERV1 67862 68068 26 + . . scaffold471 GLEAN mRNA 53233 71984 0.119206 + . ID=CGI_10026999; C24320 WUBlastX LTR_ERV1 1545 1904 27 - . . C24320 GLEAN mRNA 639 2117 0.999372 - . ID=CGI_10000190; scaffold140 WUBlastX DNA_TcMar-Marin 380385 380471 35 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX DNA_TcMar-Fot1 354829 355089 42 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L1 1045669 1045854 67 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_L1 160802 161101 22 + . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX LINE_L1 22115 22342 27 + . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L1 84588 84917 23 - . . scaffold34 GLEAN mRNA 84090 84899 0.990803 - . ID=CGI_10015929; scaffold34 WUBlastX LINE_L1 84588 84917 23 - . . scaffold34 GLEAN mRNA 80009 87721 0.738396 + . ID=CGI_10015928; scaffold479 WUBlastX LINE_RTE-BovB 6194 6355 23 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_RTE-X 70824 70871 26 + . . scaffold206 GLEAN mRNA 57948 87960 0.702119 + . ID=CGI_10011372; scaffold557 WUBlastX DNA_Maverick 508844 508972 79 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_Sola 326259 326612 24 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX DNA_TcMar-Marin 9008 9103 41 - . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_RTE-X 100821 101018 45 - . . . . . -1 -1 -1 . . . C32984 WUBlastX LINE_RTE-X 5881 6078 46 + . . C32984 GLEAN mRNA 5229 10162 1 - . ID=CGI_10000975; scaffold556 WUBlastX LINE_L1-Tx1 194261 194437 53 + . . scaffold556 GLEAN mRNA 194019 202410 0.999351 - . ID=CGI_10016802; scaffold77 WUBlastX LINE_L1-Tx1 419447 419557 37 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Copia 397196 397294 24 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold123 WUBlastX DNA_Merlin 101325 101549 70 + . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Ngaro 77056 77310 60 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Ngaro 88836 89174 57 - . . scaffold351 GLEAN mRNA 80647 91796 0.490582 - . ID=CGI_10022590; scaffold1035 WUBlastX LTR_Ngaro 32813 32986 35 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LTR_Ngaro 33004 33051 40 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_DIRS 696918 697178 65 - . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LTR_Gypsy-Cigr 34587 34949 97 - . . scaffold116 GLEAN mRNA 34503 34832 0.733461 - . ID=CGI_10009411; C34174 WUBlastX LTR_Gypsy 1191 1241 22 + . . C34174 GLEAN mRNA 745 7629 0.544712 - . ID=CGI_10001232; scaffold368 WUBlastX DNA_Harbinger 40072 40233 91 - . . scaffold368 GLEAN mRNA 27692 45024 0.754759 - . ID=CGI_10018691; scaffold457 WUBlastX LINE_I 366914 367111 26 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold1322 WUBlastX DNA_IS4EU 463490 463570 49 + . . scaffold1322 GLEAN mRNA 454396 463606 1 + . ID=CGI_10019481; scaffold43772 WUBlastX DNA_Kolobok 306595 306762 88 + . . . . . -1 -1 -1 . . . scaffold459 WUBlastX DNA_TcMar-Marin 132198 132302 35 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold1541 WUBlastX DNA_TcMar-Marin 338891 339055 29 + . . scaffold1541 GLEAN mRNA 331127 368552 0.984217 + . ID=CGI_10017895; scaffold1541 WUBlastX DNA_TcMar-Marin 339221 339271 29 + . . scaffold1541 GLEAN mRNA 331127 368552 0.984217 + . ID=CGI_10017895; scaffold1541 WUBlastX DNA_TcMar-Marin 339440 339610 29 + . . scaffold1541 GLEAN mRNA 331127 368552 0.984217 + . ID=CGI_10017895; scaffold42022 WUBlastX LTR_Gypsy 98246 98416 27 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-BovB 106830 106952 31 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 315586 315678 25 + . . scaffold709 GLEAN mRNA 310064 322384 0.999026 + . ID=CGI_10020089; C27830 WUBlastX LINE_RTE-X 4395 4682 67 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1107035 1107304 53 - . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LTR_Gypsy 771483 771920 46 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1-L2 650585 650632 25 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy-Cigr 103010 103585 66 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_L2 37716 38102 62 + . . scaffold236 GLEAN mRNA 37193 44540 0.565289 + . ID=CGI_10018135; scaffold425 WUBlastX LTR_Gypsy 1024651 1024830 49 - . . scaffold425 GLEAN mRNA 997658 1029515 0.993112 - . ID=CGI_10026011; scaffold1009 WUBlastX DNA_IS4EU 436291 436461 28 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_IS4EU 453070 453177 47 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_IS4EU 453618 453824 33 - . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX DNA_IS4EU 5297 5494 76 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX DNA_Kolobok-IS4 183682 183969 31 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_hAT-Ac 132833 133048 92 + . . . . . -1 -1 -1 . . . C34270 WUBlastX DNA_hAT-Blackja 8147 8533 52 + . . C34270 GLEAN mRNA 1937 17133 0.990126 - . ID=CGI_10001262; scaffold1116 WUBlastX RC_Helitron 28926 29408 48 - . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Gypsy 70110 70637 79 + . . . . . -1 -1 -1 . . . scaffold36170 WUBlastX LTR_ERV1 14633 15193 56 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX DNA_Kolobok-Hyd 55490 55843 49 - . . scaffold1554 GLEAN mRNA 55077 66633 0.275944 - . ID=CGI_10017356; scaffold33934 WUBlastX LINE_L1 7625 7696 25 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 419212 419397 29 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 419477 419557 38 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_L1 3214 3489 33 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_L1 1040471 1040746 33 + . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_L1-Tx1 42569 42931 63 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX DNA_hAT 103115 103294 87 - . . scaffold1717 GLEAN mRNA 96290 107438 1 - . ID=CGI_10013393; scaffold728 WUBlastX LTR_Gypsy-Cigr 280464 280694 93 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1-L2 227553 227813 69 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1-L2 227860 228003 21 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 65295 65495 97 - . . scaffold847 GLEAN mRNA 61092 71360 0.999451 - . ID=CGI_10022265; scaffold247 WUBlastX LTR_Gypsy 501642 501779 23 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy 29805 30380 48 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_ERV1 252486 252836 67 + . . . . . -1 -1 -1 . . . scaffold36390 WUBlastX LTR_Gypsy 23456 23737 101 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 214739 215485 59 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_Harbinger 591746 591904 84 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX DNA_hAT-Blackja 23195 23443 66 - . . scaffold1736 GLEAN mRNA 13332 24285 0.947251 + . ID=CGI_10020947; scaffold926 WUBlastX LTR_ERV1 48660 49058 60 - . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_Penelope 132642 133067 58 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_RTE-X 14619 14822 34 + . . . . . -1 -1 -1 . . . C30526 WUBlastX LINE_RTE-BovB 6657 6920 85 - . . . . . -1 -1 -1 . . . scaffold503 WUBlastX LINE_RTE-BovB 138982 139437 51 - . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_L1-Tx1 27786 28511 67 + . . scaffold1142 GLEAN mRNA 17099 55959 0.998343 + . ID=CGI_10008525; scaffold1054 WUBlastX LINE_L1-Tx1 28128 28853 67 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX DNA_hAT-Tip100 795049 795378 96 - . . . . . -1 -1 -1 . . . scaffold80 WUBlastX LTR_Gypsy 9819 10397 74 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX DNA_P 104742 105209 58 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L1 222169 222741 97 - . . scaffold790 GLEAN mRNA 221752 222957 0.977562 - . ID=CGI_10013171; scaffold1179 WUBlastX LINE_L1 939540 939812 87 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold42328 WUBlastX LINE_RTE-X 30738 30893 98 - . . scaffold42328 GLEAN mRNA 29569 31949 0.777732 + . ID=CGI_10006549; scaffold35004 WUBlastX LINE_RTE-X 20174 20329 98 - . . scaffold35004 GLEAN mRNA 18894 21385 1 + . ID=CGI_10001394; scaffold443 WUBlastX LINE_RTE-X 408757 408933 72 - . . scaffold443 GLEAN mRNA 402348 431121 0.212109 - . ID=CGI_10022775; scaffold43340 WUBlastX LINE_RTE-X 21243 21431 88 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_Sola 551836 552198 55 + . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold41242 WUBlastX LTR_Pao 27863 27976 33 + . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Pao 28629 28688 24 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX DNA_En-Spm 300126 300407 90 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 584086 584319 49 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold1314 WUBlastX LINE_Penelope 184979 185398 69 + . . scaffold1314 GLEAN mRNA 179869 191602 0.999193 - . ID=CGI_10009309; C33654 WUBlastX LINE_RTE-X 12014 12313 68 + . . C33654 GLEAN mRNA 2501 14319 0.999996 + . ID=CGI_10001111; scaffold38498 WUBlastX LINE_RTE-X 43898 44068 90 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_L1-Tx1 235665 235817 33 - . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX LINE_CR1 39760 39825 40 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold583 WUBlastX LINE_L2 734363 734704 71 - . . scaffold583 GLEAN mRNA 733634 740876 1 + . ID=CGI_10023642; scaffold392 WUBlastX LINE_L2 509663 510157 75 - . . scaffold392 GLEAN mRNA 509201 534293 0.542609 + . ID=CGI_10024222; scaffold67 WUBlastX LTR_Gypsy 496696 496923 68 + . . . . . -1 -1 -1 . . . scaffold410 WUBlastX DNA_P 27945 28232 117 - . . . . . -1 -1 -1 . . . scaffold1639 WUBlastX DNA_Kolobok-Hyd 74433 74615 29 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_Penelope 1021971 1022420 70 + . . . . . -1 -1 -1 . . . scaffold416 WUBlastX LINE_Penelope 272427 272876 70 - . . . . . -1 -1 -1 . . . scaffold888 WUBlastX LINE_RTE-X 206483 206779 63 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Maverick 1446235 1446516 116 + . . . . . -1 -1 -1 . . . C32106 WUBlastX DNA_Maverick 3235 3483 133 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1-Tx1 99456 99581 39 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold43242 WUBlastX DNA_TcMar-Tc1 28186 28353 33 + . . scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold1249 WUBlastX LINE_CR1-L2 353644 354615 28 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_IS4EU 488980 489462 70 + . . scaffold601 GLEAN mRNA 483357 489501 0.678522 + . ID=CGI_10026830; scaffold786 WUBlastX DNA_IS4EU 344133 344405 105 + . . scaffold786 GLEAN mRNA 340138 347810 1 + . ID=CGI_10013708; scaffold43662 WUBlastX LINE_I 148543 148845 46 - . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LINE_Penelope 300500 300799 87 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_CR1 243976 244146 81 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Ngaro 504856 505356 45 - . . . . . -1 -1 -1 . . . scaffold1561 WUBlastX LTR_Gypsy 3498 3812 29 - . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LINE_RTE-X 541495 541698 27 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 141761 142000 58 + . . scaffold1347 GLEAN mRNA 133564 144148 0.49238 + . ID=CGI_10012974; scaffold1293 WUBlastX LTR_Ngaro 141200 141673 109 - . . . . . -1 -1 -1 . . . C11826 WUBlastX LTR_Pao 2 181 150 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 221973 222149 75 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_Penelope 37281 37523 124 + . . . . . -1 -1 -1 . . . C24900 WUBlastX DNA_Sola 1543 2091 32 + . . . . . -1 -1 -1 . . . C24900 WUBlastX DNA_Sola 2171 2551 60 + . . . . . -1 -1 -1 . . . scaffold40006 WUBlastX DNA_TcMar-Tc1 8029 8382 107 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_L1-Tx1 323789 324373 139 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 34674 34922 41 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 525872 527020 336 + . . . . . -1 -1 -1 . . . scaffold908 WUBlastX LTR_Ngaro 316900 318126 943 - . . . . . -1 -1 -1 . . . scaffold34438 WUBlastX RC_Helitron 12277 12834 157 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LINE_L1-Tx1 126725 127081 29 - . . . . . -1 -1 -1 . . . scaffold1838 WUBlastX LINE_L2 335507 336361 96 - . . scaffold1838 GLEAN mRNA 332958 349598 0.563165 + . ID=CGI_10014264; scaffold323 WUBlastX DNA_TcMar-Tc2 216027 216731 99 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 666473 666601 26 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 107257 108954 101 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L2 1087554 1087898 64 + . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold962 WUBlastX LINE_L2 1087892 1088062 82 + . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold337 WUBlastX LTR_Ngaro 86290 86907 75 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1701250 1701867 75 + . . scaffold1024 GLEAN mRNA 1693215 1725420 0.440752 - . ID=CGI_10028584; scaffold1255 WUBlastX LTR_Ngaro 20391 21008 75 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Ngaro 329724 330341 75 + . . scaffold716 GLEAN mRNA 317907 344001 0.842692 + . ID=CGI_10014452; scaffold70 WUBlastX LTR_Ngaro 294891 295508 77 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LTR_Ngaro 156267 156884 75 + . . . . . -1 -1 -1 . . . scaffold43772 WUBlastX LTR_Ngaro 53229 53846 75 - . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX LTR_Ngaro 36006 36344 155 - . . . . . -1 -1 -1 . . . scaffold666 WUBlastX LTR_Ngaro 9813 9932 78 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy-Cigr 73 171 78 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy-Cigr 293 481 116 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_RTE-X 215045 215200 38 + . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_RTE-X 103461 103925 338 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LINE_RTE-X 104482 104895 149 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold1521 WUBlastX LINE_CR1-L2 146528 147295 109 + . . . . . -1 -1 -1 . . . C28006 WUBlastX LINE_CR1 3996 4211 32 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_TcMar-Tc1 585914 586153 33 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_L2 300059 300769 98 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 127153 127410 57 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 127424 127594 43 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 127593 127811 37 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX DNA_hAT-Ac 249998 250378 129 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX DNA_TcMar-Pogo 165663 165926 100 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_Penelope 182825 183073 91 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_Penelope 183159 183239 27 - . . . . . -1 -1 -1 . . . scaffold1231 WUBlastX LINE_RTE-BovB 106264 106434 36 + . . scaffold1231 GLEAN mRNA 79934 107425 0.93438 + . ID=CGI_10004703; scaffold90 WUBlastX DNA_Maverick 171854 172183 162 - . . . . . -1 -1 -1 . . . scaffold33178 WUBlastX DNA_Maverick 3841 4068 123 + . . . . . -1 -1 -1 . . . scaffold42662 WUBlastX LINE_RTE-X 162231 162704 90 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-X 23368 23739 110 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc1 733152 733286 76 + . . . . . -1 -1 -1 . . . scaffold39524 WUBlastX LINE_RTE-X 69586 71649 1021 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1-Tx1 217312 219465 608 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1-Tx1 220269 220403 65 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 156171 156677 251 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 156698 157081 302 + . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 44956 45651 420 - . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 45621 46097 302 - . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 46298 46696 220 - . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 46698 47057 192 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 167988 168020 25 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold41452 WUBlastX LINE_L2 63164 63532 41 + . . scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold1634 WUBlastX LTR_DIRS 71296 71511 20 + . . . . . -1 -1 -1 . . . scaffold33840 WUBlastX LINE_RTE-X 7817 8344 102 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L1-Tx1 132056 132274 100 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L1-Tx1 132832 133950 673 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L1-Tx1 133953 134243 117 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LINE_CR1-L2 125587 126573 472 + . . . . . -1 -1 -1 . . . scaffold1220 WUBlastX LINE_L2 36644 37114 147 - . . . . . -1 -1 -1 . . . scaffold1220 WUBlastX LINE_L2 37083 38588 1092 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Pao 445021 445311 116 + . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LINE_L2 29880 30386 128 + . . . . . -1 -1 -1 . . . C28884 WUBlastX LTR_Gypsy 3 497 177 - . . . . . -1 -1 -1 . . . scaffold635 WUBlastX DNA_Harbinger 107920 108117 117 - . . . . . -1 -1 -1 . . . scaffold635 WUBlastX DNA_Harbinger 108349 108504 51 - . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX DNA_IS4EU 95855 96430 136 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX DNA_Sola 445097 445480 193 + . . . . . -1 -1 -1 . . . scaffold1333 WUBlastX LINE_L1-Tx1 169274 170455 817 - . . . . . -1 -1 -1 . . . scaffold1333 WUBlastX LINE_L1-Tx1 170479 171237 535 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LTR_Gypsy 555972 556139 67 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold1423 WUBlastX LINE_RTE-X 239929 240594 139 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_RTE-X 733617 734132 114 + . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 103040 103210 44 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 103863 104180 25 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold237 WUBlastX LINE_L1-Tx1 703289 703381 30 - . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LTR_Gypsy 48574 48657 34 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L2 630328 631044 100 + . . . . . -1 -1 -1 . . . scaffold40150 WUBlastX LINE_CR1-L2 73137 73688 182 - . . . . . -1 -1 -1 . . . scaffold1323 WUBlastX LINE_Penelope 11645 12085 133 + . . scaffold1323 GLEAN mRNA 5100 53779 0.182338 + . ID=CGI_10009080; scaffold952 WUBlastX LTR_Ngaro 10583 10969 208 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_TcMar-Tc1 673516 673980 179 + . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX DNA_TcMar-Tc1 3195 3659 179 + . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_TcMar-Tc1 11234 11698 179 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 202109 202273 98 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Pao 164241 164963 300 - . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX LINE_Penelope 10433 11137 136 + . . . . . -1 -1 -1 . . . scaffold1401 WUBlastX LINE_RTE-BovB 4183 4497 54 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold501 WUBlastX LTR_Gypsy 71964 74027 1523 + . . . . . -1 -1 -1 . . . scaffold415 WUBlastX LINE_RTE-BovB 47028 47825 574 + . . scaffold415 GLEAN mRNA 36227 55197 0.784737 - . ID=CGI_10004218; scaffold1403 WUBlastX LTR_Gypsy-Cigr 32945 36253 1631 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 368737 369360 187 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368737 369360 187 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold1629 WUBlastX LTR_Ngaro 13914 14333 185 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L1 762237 762890 212 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 267836 268288 110 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_CR1 164208 164813 223 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Maverick 236534 236743 23 - . . . . . -1 -1 -1 . . . scaffold36526 WUBlastX LINE_L1-Tx1 20604 20948 53 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold39642 WUBlastX LINE_L1-Tx1 22197 23627 227 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L1-Tx1 23488 24336 547 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L1-Tx1 24330 24824 315 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_L1-Tx1 25058 25786 473 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 92328 92417 24 + . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LINE_L1-Tx1 101942 102118 53 + . . scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold36482 WUBlastX LINE_Penelope 34532 34690 48 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_PiggyBac 610151 610570 113 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold501 WUBlastX LTR_DIRS 633458 633676 25 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_En-Spm 1078295 1078675 131 + . . . . . -1 -1 -1 . . . scaffold243 WUBlastX DNA_Kolobok 45771 45845 34 - . . scaffold243 GLEAN mRNA 45508 46823 0.518363 - . ID=CGI_10006814; scaffold243 WUBlastX DNA_Kolobok 45931 46206 165 - . . scaffold243 GLEAN mRNA 45508 46823 0.518363 - . ID=CGI_10006814; scaffold41954 WUBlastX LINE_CR1-L2 51368 51943 80 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_L1-Tx1 105974 106708 177 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L1-Tx1 843815 844516 131 + . . scaffold1785 GLEAN mRNA 838180 855518 0.197068 - . ID=CGI_10024401; scaffold206 WUBlastX LTR_Ngaro 250838 251272 316 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L2 214319 215032 75 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX DNA_PiggyBac 62618 64009 221 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_RTE-X 218726 218980 67 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_TcMar-Pogo 410059 410205 81 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LTR_Gypsy 543195 543410 130 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Gypsy 211247 211456 82 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_I 853173 853322 30 + . . . . . -1 -1 -1 . . . scaffold29534 WUBlastX LINE_RTE-X 1373 2545 228 + . . scaffold29534 GLEAN mRNA 32 6456 1 - . ID=CGI_10000544; scaffold790 WUBlastX LINE_L1-Tx1 127698 128111 302 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_L1-Tx1 212037 213452 80 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_CR1-L2 3352 4266 243 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Gypsy 10438 10818 232 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Gypsy 10896 11231 92 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LTR_Ngaro 115698 116588 287 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LTR_Ngaro 32735 33667 255 - . . . . . -1 -1 -1 . . . C33378 WUBlastX LTR_Ngaro 9829 9990 68 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 287035 287622 375 - . . . . . -1 -1 -1 . . . scaffold1507 WUBlastX LTR_Ngaro 13521 14015 118 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold204 WUBlastX LTR_Gypsy-Cigr 371680 372162 304 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 181669 182070 148 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 496322 496840 269 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold37408 WUBlastX LTR_DIRS 4309 4563 92 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_Sola 135787 136203 182 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_Sola 136555 136650 37 + . . . . . -1 -1 -1 . . . scaffold37408 WUBlastX LTR_DIRS 4553 5236 359 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_DIRS 93787 94353 264 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold42568 WUBlastX LINE_RTE-BovB 9936 10499 340 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX DNA_Helitron 215730 216848 335 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LTR_Gypsy 156613 157182 200 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 340789 341613 298 - . . . . . -1 -1 -1 . . . C29576 WUBlastX LTR_DIRS 150 389 118 - . . . . . -1 -1 -1 . . . C29576 WUBlastX LTR_DIRS 394 696 138 - . . . . . -1 -1 -1 . . . C29576 WUBlastX LTR_DIRS 1236 1517 188 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LINE_R2-Hero 9518 11092 427 + . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX LINE_L1 41324 41785 116 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold1409 WUBlastX LINE_L1 210617 211312 77 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 147610 149730 346 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LTR_Pao 18121 18228 51 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18207 18446 176 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18634 18897 75 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18998 19423 336 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 19413 19478 34 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold1833 WUBlastX LTR_Gypsy 95060 95122 21 - . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LTR_Gypsy 351180 351515 62 - . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX DNA_TcMar-Tc1 303686 304282 261 + . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX DNA_TcMar-Tc1 304291 304635 130 + . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX DNA_TcMar-Tc1 304635 304673 20 + . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy 30570 30899 20 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LTR_Pao 271628 272248 256 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LTR_Pao 272319 272657 114 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Gypsy 1039788 1040774 268 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Maverick 401929 402771 229 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 393907 394185 149 - . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX LINE_L1-Tx1 116235 116942 161 - . . . . . -1 -1 -1 . . . scaffold43108 WUBlastX LTR_Gypsy 124103 125239 671 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Gypsy 204960 206513 216 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_L1-Tx1 193618 194136 71 - . . . . . -1 -1 -1 . . . scaffold39592 WUBlastX LINE_L2 44568 44864 152 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_hAT-hATw 383269 383892 32 - . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LINE_RTE-X 73303 74562 261 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LTR_Ngaro 34005 34505 280 - . . . . . -1 -1 -1 . . . scaffold33832 WUBlastX LTR_Ngaro 3851 4441 387 + . . . . . -1 -1 -1 . . . scaffold42598 WUBlastX LINE_RTE-X 52378 53160 200 - . . scaffold42598 GLEAN mRNA 51303 78059 0.0124996 + . ID=CGI_10007333; scaffold260 WUBlastX LINE_RTE-X 33384 34934 436 + . . . . . -1 -1 -1 . . . scaffold260 WUBlastX LINE_RTE-X 34936 35364 82 + . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L1-Tx1 545129 547807 40 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_L1-Tx1 548187 548777 168 - . . . . . -1 -1 -1 . . . scaffold926 WUBlastX DNA_Sola 202546 203175 236 + . . . . . -1 -1 -1 . . . scaffold786 WUBlastX DNA_hAT-Tip100 298799 299413 399 + . . . . . -1 -1 -1 . . . scaffold786 WUBlastX DNA_hAT-Tip100 299377 300339 359 + . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L1 301336 301938 99 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 394856 396052 834 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold370 WUBlastX LTR_Gypsy 847418 848377 670 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-X 1622002 1622364 186 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Pao 293699 294424 632 + . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_RTE-X 325428 327092 698 + . . scaffold1579 GLEAN mRNA 320598 331843 0.999956 + . ID=CGI_10016869; scaffold99 WUBlastX LTR_Pao 166729 169458 546 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 245150 245362 160 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Copia 577923 578264 20 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_hAT-Tip100 121795 122100 73 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX DNA_hAT 240390 240533 29 + . . scaffold1554 GLEAN mRNA 240225 241877 0.999996 + . ID=CGI_10017366; scaffold54 WUBlastX LINE_L2 637381 637803 34 - . . . . . -1 -1 -1 . . . C30662 WUBlastX LINE_CR1 767 829 24 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_CR1 6404 6487 39 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L2 310028 310240 62 + . . . . . -1 -1 -1 . . . scaffold38990 WUBlastX LINE_L2 63131 63634 24 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 615403 615465 24 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LINE_CR1-L2 353811 353945 73 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Ngaro 533087 533458 45 + . . . . . -1 -1 -1 . . . scaffold260 WUBlastX LTR_DIRS 78816 79055 52 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 615403 615498 21 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L2 13334 13624 55 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy 115249 115776 30 + . . . . . -1 -1 -1 . . . scaffold42348 WUBlastX LTR_Gypsy 48922 49119 28 - . . scaffold42348 GLEAN mRNA 47845 51431 0.96594 + . ID=CGI_10006678; scaffold145 WUBlastX LTR_Gypsy 608464 609228 42 + . . . . . -1 -1 -1 . . . C22430 WUBlastX LTR_Gypsy 1468 1623 52 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 164346 164606 33 + . . scaffold1081 GLEAN mRNA 151167 168373 0.603491 + . ID=CGI_10007686; scaffold38978 WUBlastX DNA_Harbinger 9996 10214 39 - . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold1854 WUBlastX LINE_L1-Tx1 29232 29408 39 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_L1-Tx1 782351 782518 71 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok-Hyd 1352593 1353180 47 - . . scaffold86 GLEAN mRNA 1350663 1354624 0.5119 - . ID=CGI_10028203; scaffold784 WUBlastX LINE_L1 433304 433453 50 + . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_L1 399727 400320 56 - . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LINE_L1-Tx1 175637 175690 21 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_NOF 898996 899109 29 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_Penelope 675131 675418 24 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX DNA_P 45753 45878 70 - . . . . . -1 -1 -1 . . . scaffold41664 WUBlastX LINE_Penelope 85750 85977 60 + . . scaffold41664 GLEAN mRNA 76394 94658 0.233482 + . ID=CGI_10005416; scaffold41664 WUBlastX LINE_Penelope 87712 87939 60 + . . scaffold41664 GLEAN mRNA 76394 94658 0.233482 + . ID=CGI_10005416; scaffold621 WUBlastX LINE_Penelope 350358 350585 82 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_TcMar-Marin 142622 142846 58 - . . scaffold32 GLEAN mRNA 141633 158953 0.992121 + . ID=CGI_10010068; scaffold722 WUBlastX DNA_TcMar-Marin 242449 242607 44 - . . scaffold722 GLEAN mRNA 213107 274814 0.920529 - . ID=CGI_10012201; scaffold534 WUBlastX DNA_TcMar-Marin 3639 3821 51 + . . scaffold534 GLEAN mRNA 930 8013 1 - . ID=CGI_10005162; scaffold370 WUBlastX LINE_RTE-X 188290 188487 51 - . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold1350 WUBlastX LINE_RTE-X 88817 89032 29 - . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_RTE-BovB 118432 118587 54 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX DNA_Maverick 259641 259883 52 - . . . . . -1 -1 -1 . . . scaffold41988 WUBlastX DNA_PiggyBac 97589 97912 49 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_Proto2 27767 28006 21 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_RTE-X 470008 470112 23 - . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-X 259545 259673 56 - . . . . . -1 -1 -1 . . . scaffold292 WUBlastX DNA_TcMar-Stowa 54417 54845 34 + . . scaffold292 GLEAN mRNA 51568 72452 0.660019 + . ID=CGI_10003529; scaffold113 WUBlastX LINE_L1-Tx1 388190 388438 49 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LTR_Gypsy 15326 15670 75 - . . scaffold288 GLEAN mRNA 7263 20009 0.942947 + . ID=CGI_10020653; scaffold142 WUBlastX LINE_L2 746524 746997 26 + . . scaffold142 GLEAN mRNA 742581 749967 0.999676 + . ID=CGI_10026769; scaffold86 WUBlastX LINE_L2 77151 77390 30 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 588284 588358 24 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX RC_Helitron 796175 796405 88 + . . . . . -1 -1 -1 . . . scaffold1553 WUBlastX DNA_IS4EU 74412 74723 51 - . . scaffold1553 GLEAN mRNA 73907 74723 0.759666 - . ID=CGI_10005363; scaffold58 WUBlastX DNA_IS4EU 399112 399423 51 - . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold86 WUBlastX DNA_IS4EU 228354 228665 51 - . . scaffold86 GLEAN mRNA 226150 228665 0.977065 - . ID=CGI_10028143; scaffold40134 WUBlastX DNA_Harbinger 34839 35168 21 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_Penelope 225009 225206 41 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_L1 413928 414212 66 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_RTE-X 105006 105434 89 - . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX LINE_RTE-X 9926 10171 46 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_L2 893166 893438 62 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 1441520 1441840 78 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy-Cigr 50426 50686 44 + . . . . . -1 -1 -1 . . . scaffold314 WUBlastX LTR_Gypsy 80862 81116 57 + . . . . . -1 -1 -1 . . . scaffold314 WUBlastX LTR_Gypsy 81431 81715 27 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LTR_Gypsy 102570 102860 95 - . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LTR_Ngaro 175999 176259 35 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; C34174 WUBlastX LTR_Ngaro 1252 1449 79 + . . C34174 GLEAN mRNA 745 7629 0.544712 - . ID=CGI_10001232; scaffold38822 WUBlastX LTR_Ngaro 8362 8772 76 + . . scaffold38822 GLEAN mRNA 229 9168 0.999998 - . ID=CGI_10003013; scaffold1896 WUBlastX LINE_L1 111676 111837 21 + . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LINE_Penelope 81631 82197 50 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_Penelope 50072 50644 39 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_Penelope 69854 70321 62 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1 1073771 1073878 21 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LINE_RTE-X 18937 19143 29 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold38752 WUBlastX LINE_RTE-X 8992 9168 86 - . . scaffold38752 GLEAN mRNA 1672 15456 0.650722 - . ID=CGI_10002945; scaffold38752 WUBlastX LINE_RTE-X 8992 9168 86 - . . scaffold38752 GLEAN mRNA 5725 16402 0.993907 + . ID=CGI_10002946; scaffold43726 WUBlastX LINE_RTE-X 157303 157434 70 + . . scaffold43726 GLEAN mRNA 145496 185415 0.997652 - . ID=CGI_10012023; C22570 WUBlastX LINE_L1 11 580 27 - . . . . . -1 -1 -1 . . . scaffold449 WUBlastX LINE_L2 278988 279287 70 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_CR1-L2 1515028 1515276 108 + . . . . . -1 -1 -1 . . . scaffold1006 WUBlastX LTR_Gypsy 40089 41042 45 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX RC_Helitron 112568 113023 89 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LINE_RTE-X 304970 305173 24 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold532 WUBlastX LINE_R2 72682 72783 26 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_CR1 77788 78162 72 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L2 483414 483533 46 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L2 483586 483807 85 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LTR_Ngaro 196532 197155 25 + . . . . . -1 -1 -1 . . . scaffold314 WUBlastX LTR_Ngaro 140395 140700 89 + . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_DIRS 56635 57117 84 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 47022 47357 38 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 218951 219121 131 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_IS4EU 67612 67824 79 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; C14790 WUBlastX LINE_Penelope 2 268 52 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_Penelope 755518 755874 65 - . . . . . -1 -1 -1 . . . scaffold1735 WUBlastX DNA_MuDR 19466 20167 71 + . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LINE_RTE-X 153899 153937 30 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LINE_RTE-X 298513 298653 20 + . . . . . -1 -1 -1 . . . scaffold328 WUBlastX LINE_RTE-X 1592 1999 71 + . . . . . -1 -1 -1 . . . scaffold33382 WUBlastX LTR_ERV1 10003 10362 30 - . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX LINE_CR1-L2 61105 61656 81 - . . . . . -1 -1 -1 . . . scaffold935 WUBlastX LINE_L2 40781 41155 92 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L2 538674 539147 67 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_CR1 150535 150705 49 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_L2 443301 443864 85 - . . . . . -1 -1 -1 . . . scaffold42866 WUBlastX DNA_IS4EU 71332 71997 105 - . . scaffold42866 GLEAN mRNA 43150 93731 0.871395 + . ID=CGI_10007991; scaffold1728 WUBlastX DNA_Harbinger 113289 113498 51 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Harbinger 27297 27422 53 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LINE_Penelope 34079 34354 92 - . . scaffold274 GLEAN mRNA 31807 34983 0.990803 + . ID=CGI_10017008; scaffold1436 WUBlastX DNA_Kolobok 111194 111430 44 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX LINE_RTE-X 232818 233171 72 - . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold115 WUBlastX LINE_RTE-X 243944 244249 78 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LINE_RTE-X 24685 24972 72 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX DNA_Maverick 86676 86888 91 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX DNA_Maverick 90593 90877 129 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 650714 651004 89 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_L1-Tx1 106175 106579 32 - . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L2 30069 30446 26 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LTR_Pao 229525 230901 107 - . . . . . -1 -1 -1 . . . C14550 WUBlastX LTR_Gypsy 24 158 126 - . . . . . -1 -1 -1 . . . scaffold139 WUBlastX LTR_DIRS 4622 5488 93 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_L1-Tx1 360538 360834 29 - . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_L1-Tx1 361308 361448 62 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_L1 23887 24828 53 - . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L1-Tx1 40601 40948 24 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 369241 369288 30 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_RTE-X 99340 99474 22 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_TcMar-Fot1 270568 270978 97 + . . scaffold43660 GLEAN mRNA 262639 273396 0.998201 - . ID=CGI_10011673; scaffold675 WUBlastX LINE_Jockey 68113 68277 45 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_L2 257951 258295 112 + . . . . . -1 -1 -1 . . . scaffold1636 WUBlastX LTR_Gypsy 5515 6375 102 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 49333 50250 90 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX DNA_TcMar-Marin 688418 688720 83 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_Penelope 127440 127637 64 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold1860 WUBlastX LINE_L1-Tx1 244459 244830 41 + . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_L1 3274 3912 53 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold1571 WUBlastX LINE_L1 171418 172092 70 - . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 1132 1275 33 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LINE_L1-Tx1 120069 120302 102 - . . . . . -1 -1 -1 . . . C24582 WUBlastX LINE_L1-Tx1 3 461 49 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1-L2 361303 361599 142 - . . . . . -1 -1 -1 . . . scaffold459 WUBlastX DNA_Merlin 51150 51503 98 - . . scaffold459 GLEAN mRNA 48177 82844 0.45554 + . ID=CGI_10018167; scaffold41776 WUBlastX LTR_Gypsy 115564 115683 33 + . . . . . -1 -1 -1 . . . scaffold41470 WUBlastX DNA_Harbinger 59640 60431 115 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 119370 119726 112 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Gypsy 785319 786329 98 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_Harbinger 387436 387726 116 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_hAT-Ac 762544 762834 146 + . . . . . -1 -1 -1 . . . scaffold675 WUBlastX LINE_Penelope 45710 46243 97 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LINE_Penelope 221503 221964 102 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_Ngaro 117302 117922 73 + . . scaffold113 GLEAN mRNA 112752 117970 0.458528 + . ID=CGI_10021286; C27694 WUBlastX DNA_Maverick 2459 2566 46 - . . C27694 GLEAN mRNA 2532 3020 1 - . ID=CGI_10000376; scaffold39804 WUBlastX LINE_RTE-X 2434 2802 95 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_L1-Tx1 105366 105404 29 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1-Tx1 199456 199698 100 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_hAT 1355229 1355528 125 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Pao 299943 300497 133 + . . . . . -1 -1 -1 . . . C29134 WUBlastX LTR_Ngaro 4479 5060 78 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Harbinger 190746 190910 94 + . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX LINE_RTE-X 61076 61153 39 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Ngaro 578431 578562 31 + . . scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1354 WUBlastX LINE_L1-Tx1 170733 170828 32 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold1680 WUBlastX LTR_Gypsy 70049 72937 774 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold413 WUBlastX RC_Helitron 278599 279693 401 - . . . . . -1 -1 -1 . . . scaffold1892 WUBlastX LINE_L2 286423 287139 102 + . . . . . -1 -1 -1 . . . scaffold436 WUBlastX LINE_L2 12689 13156 141 - . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LTR_DIRS 65798 66286 101 + . . . . . -1 -1 -1 . . . scaffold35902 WUBlastX LTR_Gypsy 28597 28809 169 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX RC_Helitron 772079 772573 136 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 328267 328710 138 - . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_TcMar-Fot1 88693 89001 27 - . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_TcMar-Fot1 89309 89533 56 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_DIRS 606382 606609 121 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_DIRS 606590 606769 21 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Gypsy 18137 19399 1063 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LTR_Gypsy 376115 376216 42 - . . . . . -1 -1 -1 . . . scaffold35970 WUBlastX LTR_Gypsy 27972 29537 1112 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LINE_CR1 205224 205319 37 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold634 WUBlastX LTR_Pao 6622 6756 27 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 7839 7916 30 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 117521 117622 60 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 317679 317726 20 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_Penelope 123968 124459 129 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_Penelope 204550 205086 106 - . . . . . -1 -1 -1 . . . scaffold696 WUBlastX LINE_RTE-X 11591 12022 114 + . . scaffold696 GLEAN mRNA 7653 15168 0.999968 + . ID=CGI_10003719; scaffold976 WUBlastX DNA_TcMar-Tc1 37673 38194 155 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX LTR_Gypsy 98232 98915 211 - . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_Jockey 243570 244796 54 - . . scaffold378 GLEAN mRNA 222180 244864 0.996816 + . ID=CGI_10017641; scaffold41304 WUBlastX LTR_Ngaro 70432 71481 93 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 496064 497062 115 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_hAT-hATw 127096 127782 109 + . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX LINE_Penelope 44985 45110 26 - . . . . . -1 -1 -1 . . . scaffold42448 WUBlastX DNA_TcMar-Tc1 19613 20416 127 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1106039 1106293 77 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1107128 1107340 52 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 499119 499298 61 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 499671 499916 36 - . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LINE_L1-Tx1 15098 15691 391 - . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LINE_L1-Tx1 15685 16041 215 - . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LINE_L1-Tx1 16793 17872 482 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 519840 520598 143 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_L2 181090 181674 97 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_L2 181700 181828 28 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LTR_Ngaro 428669 429022 171 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Gypsy 382664 383530 31 + . . . . . -1 -1 -1 . . . scaffold1471 WUBlastX DNA_IS4EU 12287 12538 141 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 476342 476884 269 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L2 15367 15738 175 + . . . . . -1 -1 -1 . . . C28800 WUBlastX LTR_Pao 700 1278 189 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_RTE-X 6466 6666 69 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 215683 216147 62 - . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold40680 WUBlastX LTR_DIRS 85956 86540 104 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Ngaro 85550 86146 178 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1-Tx1 206971 207105 30 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Gypsy 304191 305276 657 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 18952 20064 276 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 1775 2125 53 + . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX DNA_Harbinger 24054 24236 135 - . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX DNA_Harbinger 24285 24497 72 - . . . . . -1 -1 -1 . . . C29290 WUBlastX LTR_DIRS 3907 4068 105 + . . . . . -1 -1 -1 . . . scaffold50 WUBlastX DNA_IS4EU 196009 196347 212 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 104108 104584 141 + . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_RTE-X 120722 120871 58 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX DNA_TcMar-Tc1 24413 24610 97 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 629556 630692 871 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold41242 WUBlastX LTR_Pao 32393 32620 102 + . . . . . -1 -1 -1 . . . C33482 WUBlastX LINE_L2 3369 3827 46 + . . . . . -1 -1 -1 . . . C30458 WUBlastX LINE_L1 5080 5529 193 + . . C30458 GLEAN mRNA 986 6010 1 - . ID=CGI_10000625; scaffold41852 WUBlastX LINE_L1 1401 1640 46 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_TcMar-Tc1 786582 786788 96 - . . . . . -1 -1 -1 . . . scaffold37678 WUBlastX DNA_Helitron 11840 14506 755 - . . scaffold37678 GLEAN mRNA 3054 19948 0.906607 - . ID=CGI_10002431; scaffold337 WUBlastX LTR_Gypsy 490375 490767 91 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold33610 WUBlastX LTR_Gypsy 11303 12508 229 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 62062 62364 81 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy-Cigr 295896 296291 114 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy-Cigr 296294 296779 77 + . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_L1-Tx1 6118 7164 156 + . . . . . -1 -1 -1 . . . C28030 WUBlastX LINE_L1-Tx1 309 554 42 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-BovB 738428 739498 122 + . . scaffold485 GLEAN mRNA 737910 749557 0.981296 + . ID=CGI_10024192; scaffold485 WUBlastX LINE_RTE-BovB 738428 739498 122 + . . scaffold485 GLEAN mRNA 734638 750215 1 - . ID=CGI_10024191; scaffold35796 WUBlastX LINE_L1-Tx1 13831 13971 64 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_TcMar-Tc1 403981 404553 22 + . . scaffold1402 GLEAN mRNA 402740 419521 0.863535 + . ID=CGI_10017593; scaffold783 WUBlastX LINE_RTE-X 141503 142111 186 + . . . . . -1 -1 -1 . . . scaffold1812 WUBlastX LTR_Gypsy 6 452 277 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_IS4EU 772859 773410 226 + . . . . . -1 -1 -1 . . . scaffold532 WUBlastX LINE_RTE-X 27271 27693 137 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_TcMar-Tc1 139730 140221 91 + . . . . . -1 -1 -1 . . . scaffold36642 WUBlastX LTR_Gypsy 31855 33600 1467 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 705129 705473 112 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-X 32396 33103 115 + . . . . . -1 -1 -1 . . . scaffold39986 WUBlastX LINE_RTE-X 62569 62862 51 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_Maverick 12545 15604 2229 - . . scaffold298 GLEAN mRNA 12121 16223 1 - . ID=CGI_10018816; scaffold1815 WUBlastX LTR_Pao 46347 47381 163 - . . scaffold1815 GLEAN mRNA 41524 49047 0.999999 + . ID=CGI_10010261; scaffold1352 WUBlastX LTR_Gypsy 154567 155097 117 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 316535 316699 21 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 317574 317882 72 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 318628 318747 40 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 998899 999984 210 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 92331 93002 280 - . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_L1 42710 43405 249 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 476645 477043 265 - . . . . . -1 -1 -1 . . . scaffold36866 WUBlastX LTR_DIRS 34262 34861 254 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 480488 480976 252 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LTR_Gypsy 159659 161560 1485 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_DIRS 202533 203144 250 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Ngaro 3959 4099 35 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Ngaro 4157 4489 111 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX RC_Helitron 633311 633853 246 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Pao 47137 47661 527 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Ngaro 647081 647359 175 + . . . . . -1 -1 -1 . . . scaffold1089 WUBlastX LTR_DIRS? 113905 114114 48 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_DIRS 59685 60392 219 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_DIRS 60772 60894 41 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 499171 499335 80 - . . . . . -1 -1 -1 . . . C34630 WUBlastX DNA_TcMar-Tc1 3383 3769 75 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_ERV1 5373 6152 161 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 962503 962799 60 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA 577002 577517 31 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 329560 330393 303 + . . . . . -1 -1 -1 . . . scaffold474 WUBlastX DNA_PiggyBac 94925 95125 96 + . . . . . -1 -1 -1 . . . scaffold474 WUBlastX DNA_PiggyBac 95391 95903 218 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_CR1-L2 555206 555259 33 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_En-Spm 224928 225839 285 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 318185 318592 27 - . . . . . -1 -1 -1 . . . C25404 WUBlastX DNA_IS4EU 33 422 136 - . . . . . -1 -1 -1 . . . C25404 WUBlastX DNA_IS4EU 597 1100 196 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_TcMar-Fot1 550612 551568 277 + . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_Sola 49971 50285 86 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LTR_Gypsy 774304 774387 22 - . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX DNA_IS4EU 51093 51254 100 - . . scaffold39640 GLEAN mRNA 51087 54120 0.557203 - . ID=CGI_10003501; scaffold43146 WUBlastX DNA_Kolobok-IS4 102864 103028 58 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_Kolobok-IS4 105006 105080 32 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_Kolobok-IS4 106067 106387 54 - . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold1097 WUBlastX LTR_Gypsy 861771 862253 68 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold82 WUBlastX LINE_RTE-X 185134 185523 271 - . . scaffold82 GLEAN mRNA 181182 187437 1 + . ID=CGI_10025244; scaffold34888 WUBlastX LINE_L1-Tx1 7384 7560 67 + . . . . . -1 -1 -1 . . . scaffold33820 WUBlastX LINE_L1 54 995 310 - . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L2 831570 832427 326 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_Crypton 460882 461451 251 - . . scaffold58 GLEAN mRNA 456330 469512 0.944736 - . ID=CGI_10023145; scaffold1009 WUBlastX LTR_Gypsy 210046 210576 426 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX DNA_hAT-Tip100 129640 129780 55 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold616 WUBlastX LINE_L1-Tx1 128071 128757 196 + . . scaffold616 GLEAN mRNA 126038 136791 1 + . ID=CGI_10015389; scaffold1403 WUBlastX DNA_TcMar-Marin 230336 230734 212 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Pao 754761 754949 104 - . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LINE_RTE-BovB 68193 68366 182 + . . . . . -1 -1 -1 . . . scaffold1367 WUBlastX DNA_Sola 70766 71809 325 + . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 109320 109895 253 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1-Tx1 154372 154662 215 + . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_Sola 24745 25092 134 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_Harbinger 1219135 1220073 365 - . . scaffold142 GLEAN mRNA 1216819 1221683 0.999676 + . ID=CGI_10026797; scaffold508 WUBlastX LINE_L2 215643 216836 306 - . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LINE_RTE-X 144985 145824 281 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX DNA_IS4EU 217838 218188 37 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX DNA_IS4EU 219717 219797 27 - . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold1186 WUBlastX DNA_IS4EU 184672 184812 31 - . . scaffold1186 GLEAN mRNA 184618 184851 1 - . ID=CGI_10010596; scaffold42402 WUBlastX LTR_Gypsy-Cigr 20623 21072 181 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LTR_Gypsy-Cigr 21419 21616 71 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LTR_Gypsy-Cigr 21631 21939 28 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 570086 570199 27 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Gypsy 303586 303681 21 + . . . . . -1 -1 -1 . . . scaffold577 WUBlastX RC_Helitron 117995 118273 67 + . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-X 26544 26675 64 + . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LTR_Gypsy 26409 26840 83 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold77 WUBlastX LTR_Ngaro 698206 699072 343 + . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX DNA_TcMar-Tc1 153733 154029 48 - . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LTR_DIRS 67713 69584 278 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 398590 398775 20 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; C28766 WUBlastX LTR_Gypsy 4914 5879 569 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 263343 263606 45 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 263798 264136 150 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_ERV1 486575 486652 26 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_ERV1 493297 493374 26 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1-Tx1 1078644 1080155 381 + . . scaffold419 GLEAN mRNA 1076054 1088367 0.937506 + . ID=CGI_10028386; scaffold1699 WUBlastX LTR_Gypsy 57334 57465 65 + . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LTR_Gypsy 57894 58385 335 + . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LTR_Pao 170105 170170 21 - . . scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold37092 WUBlastX LINE_L1 30007 30309 83 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Pao 596347 597837 545 - . . scaffold347 GLEAN mRNA 592653 598604 0.749141 + . ID=CGI_10021803; scaffold86 WUBlastX LINE_RTE-X 1113498 1114016 153 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1072258 1072725 32 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1073340 1073468 41 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold581 WUBlastX DNA_TcMar-Tc1 332053 333054 479 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX DNA_Helitron 214965 216281 293 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 318901 319320 193 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 319344 319889 145 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 319925 320110 146 - . . . . . -1 -1 -1 . . . scaffold1159 WUBlastX LINE_L1 192766 193305 252 + . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LINE_L1-Tx1 21266 21712 82 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_R2-Hero 289894 290991 192 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_R2-Hero 290986 291687 350 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX LINE_R2-Hero 600992 602089 192 + . . scaffold1788 GLEAN mRNA 585785 601075 0.975766 + . ID=CGI_10019941; scaffold1788 WUBlastX LINE_R2-Hero 602084 602785 350 + . . . . . -1 -1 -1 . . . scaffold982 WUBlastX LINE_RTE-X 1790 3469 366 - . . . . . -1 -1 -1 . . . scaffold278 WUBlastX LTR_Gypsy 32802 33434 281 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_RTE-X 46514 46924 72 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_DIRS 511358 511894 163 - . . scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold492 WUBlastX LINE_L2 89879 90349 272 - . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L1 131739 132074 142 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 491387 492682 631 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_hAT-hATw 381897 382190 207 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_hAT-hATw 382189 382848 366 - . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_DIRS 7556 9196 487 + . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_DIRS 9226 9540 144 + . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LTR_DIRS 9573 9833 69 + . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LTR_Pao 417891 418457 25 - . . scaffold948 GLEAN mRNA 412682 418646 0.813847 - . ID=CGI_10020024; scaffold1677 WUBlastX LTR_Pao 10932 11066 61 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1 95855 96553 32 - . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX DNA_Academ 50400 50585 30 - . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX DNA_Academ 50694 50906 22 - . . . . . -1 -1 -1 . . . C28006 WUBlastX LINE_L2 3031 3075 20 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LINE_L2 149055 149144 38 - . . scaffold317 GLEAN mRNA 146394 150282 0.992482 + . ID=CGI_10019346; scaffold406 WUBlastX LTR_Copia 707942 708295 60 + . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_CR1 77054 77416 21 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_CR1-L2 296709 297080 58 + . . scaffold606 GLEAN mRNA 296790 297152 1 + . ID=CGI_10012954; scaffold43036 WUBlastX LINE_CR1-L2 171647 171790 45 + . . scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold272 WUBlastX LINE_L2 819 1061 24 + . . scaffold272 GLEAN mRNA 399 2072 0.555898 + . ID=CGI_10003053; scaffold40194 WUBlastX LINE_Jockey 52721 52981 45 - . . . . . -1 -1 -1 . . . scaffold33934 WUBlastX LTR_Gypsy 10187 11008 47 - . . . . . -1 -1 -1 . . . scaffold1827 WUBlastX LTR_ERV1 51097 51363 37 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-BovB 284457 284531 21 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Gypsy 69979 70173 45 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX RC_Helitron 747710 747985 90 - . . . . . -1 -1 -1 . . . scaffold253 WUBlastX LTR_Gypsy 3489 3971 20 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold1866 WUBlastX LTR_Gypsy 171689 171814 21 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_L1 19128 19205 23 + . . . . . -1 -1 -1 . . . scaffold1028 WUBlastX LINE_L1 226588 226851 34 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 577875 578153 20 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_I 182861 183421 23 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_Penelope 456279 456503 30 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_Penelope 456590 456835 22 + . . . . . -1 -1 -1 . . . scaffold190 WUBlastX DNA_P 307865 308080 31 + . . . . . -1 -1 -1 . . . scaffold35866 WUBlastX DNA_P 5019 5231 38 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_P 463803 464015 38 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX DNA_P 87072 87284 38 - . . . . . -1 -1 -1 . . . scaffold564 WUBlastX DNA_TcMar-Marin 373337 373411 27 + . . . . . -1 -1 -1 . . . scaffold41550 WUBlastX LINE_RTE-X 24638 24727 26 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_RTE-X 388386 388610 52 + . . scaffold44 GLEAN mRNA 377498 394536 0.863441 - . ID=CGI_10016839; scaffold11 WUBlastX LINE_RTE-X 288471 288620 69 - . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-BovB 41267 41644 35 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_RTE-X 390373 390483 51 + . . scaffold447 GLEAN mRNA 368288 390714 0.81168 + . ID=CGI_10014236; scaffold115 WUBlastX DNA_PiggyBac 380732 380875 48 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_PiggyBac 378544 378783 62 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_Proto2 205021 205233 68 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 526397 526540 47 - . . . . . -1 -1 -1 . . . scaffold36342 WUBlastX DNA_TcMar-Marin 14752 14835 24 - . . . . . -1 -1 -1 . . . scaffold36342 WUBlastX DNA_TcMar-Marin 14844 14921 33 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX DNA_Sola 61027 61158 47 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Sola 256968 257078 31 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1106912 1107364 25 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Copia 552492 552872 20 - . . . . . -1 -1 -1 . . . C31590 WUBlastX LINE_L1-Tx1 4436 4762 46 - . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_CR1-L2 278876 279004 29 - . . scaffold818 GLEAN mRNA 276309 285154 0.988898 + . ID=CGI_10014515; scaffold1900 WUBlastX LTR_Gypsy 409855 409938 27 + . . . . . -1 -1 -1 . . . scaffold80 WUBlastX LTR_Gypsy 10296 10736 46 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 102669 103172 24 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_Kolobok-IS4 188983 189096 23 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L2 747331 747498 56 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold681 WUBlastX LINE_Jockey 296488 296940 75 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_hAT-Tip100 78184 78513 66 + . . . . . -1 -1 -1 . . . scaffold1838 WUBlastX LINE_Proto2 364280 364492 60 + . . scaffold1838 GLEAN mRNA 361613 368125 0.631432 + . ID=CGI_10014266; scaffold100 WUBlastX LINE_RTE-BovB 988499 988948 34 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1-Tx1 232049 232303 30 - . . scaffold1097 GLEAN mRNA 224191 235119 0.686153 - . ID=CGI_10024512; scaffold1631 WUBlastX DNA_TcMar-Tc1 37418 37519 45 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L2 300929 301246 29 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_Tad1? 151792 151905 34 + . . . . . -1 -1 -1 . . . scaffold1778 WUBlastX LTR_Copia 41318 41452 29 + . . scaffold1778 GLEAN mRNA 34936 42863 0.220539 - . ID=CGI_10002479; scaffold487 WUBlastX LTR_Gypsy 384636 385145 76 + . . . . . -1 -1 -1 . . . scaffold982 WUBlastX DNA_Harbinger 14570 14641 25 - . . . . . -1 -1 -1 . . . scaffold982 WUBlastX DNA_Harbinger 15632 15835 28 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_L2 413767 414030 32 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 798759 798986 72 + . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX LINE_RTE-X 248340 248729 23 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_Maverick 563300 563731 63 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 123519 123644 50 + . . scaffold896 GLEAN mRNA 120712 129433 0.394415 + . ID=CGI_10022834; scaffold750 WUBlastX LINE_RTE-X 593346 593717 43 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_RTE-X 185839 185991 82 + . . . . . -1 -1 -1 . . . C33560 WUBlastX LINE_RTE-X 1064 1252 53 - . . . . . -1 -1 -1 . . . scaffold37788 WUBlastX LINE_RTE-X 42324 42422 30 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 143520 143714 46 - . . scaffold3 GLEAN mRNA 140543 146890 0.72249 + . ID=CGI_10027280; scaffold43366 WUBlastX LINE_RTE-BovB 68105 68272 101 + . . scaffold43366 GLEAN mRNA 17620 68275 0.671891 + . ID=CGI_10009982; scaffold1247 WUBlastX DNA_TcMar-Tc1 181983 182192 73 + . . scaffold1247 GLEAN mRNA 173109 184348 0.886383 - . ID=CGI_10008950; scaffold6 WUBlastX LINE_L1 162872 163195 70 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_hAT-Tip100 33522 33707 20 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_hAT-Tip100 329759 330121 104 + . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LTR_Gypsy 1908 2579 27 + . . . . . -1 -1 -1 . . . scaffold660 WUBlastX DNA_Crypton 136827 137003 76 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold1366 WUBlastX DNA_Crypton 163773 163982 46 - . . scaffold1366 GLEAN mRNA 163589 176739 0.942246 + . ID=CGI_10012296; scaffold1189 WUBlastX LTR_Ngaro 115419 115673 85 + . . . . . -1 -1 -1 . . . scaffold510 WUBlastX DNA_IS4EU 273693 274070 77 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_L2 71973 72635 38 + . . scaffold588 GLEAN mRNA 27826 75048 0.701659 + . ID=CGI_10016209; scaffold43182 WUBlastX DNA_TcMar-Tc1 99638 99811 40 + . . scaffold43182 GLEAN mRNA 97443 102816 0.800679 + . ID=CGI_10009200; C14906 WUBlastX LINE_Penelope 46 258 56 + . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LINE_Penelope 121787 122014 73 + . . scaffold1590 GLEAN mRNA 117504 127573 0.611115 - . ID=CGI_10005511; scaffold358 WUBlastX LINE_L1 84270 84749 83 - . . . . . -1 -1 -1 . . . scaffold39482 WUBlastX DNA_PiggyBac 53 199 80 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX DNA_MuDR 36854 37780 78 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_hAT 497005 497202 60 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold177 WUBlastX LTR_Gypsy-Cigr 219671 219907 46 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_En-Spm 1419930 1420118 58 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_DIRS 1017665 1018270 40 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold747 WUBlastX LTR_Gypsy 349358 350413 59 + . . . . . -1 -1 -1 . . . scaffold39500 WUBlastX LTR_Gypsy 22705 22977 73 - . . . . . -1 -1 -1 . . . scaffold42032 WUBlastX DNA_Kolobok-IS4 138453 138758 33 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Harbinger 36950 37096 44 - . . scaffold40134 GLEAN mRNA 35614 38090 0.665574 - . ID=CGI_10003882; scaffold625 WUBlastX LINE_L1 456695 456808 44 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX DNA_TcMar-Tc2 354025 354363 29 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LTR_Pao 253019 253273 44 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_R2-Hero 276291 276641 81 + . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LINE_R2-Hero 276662 276769 32 + . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LINE_L1 185264 185332 33 - . . . . . -1 -1 -1 . . . scaffold39536 WUBlastX LINE_Penelope 20890 21162 89 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_CR1 447879 447944 20 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_Rex-Babar 35640 36464 66 + . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX LINE_RTE-BovB 73541 73825 75 + . . scaffold1656 GLEAN mRNA 45907 73911 0.308617 - . ID=CGI_10006142; scaffold1322 WUBlastX LTR_Ngaro 587851 588180 78 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold685 WUBlastX LTR_Pao 81152 82417 117 + . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LINE_CR1 33210 33380 102 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 227510 227743 120 - . . . . . -1 -1 -1 . . . scaffold908 WUBlastX DNA_IS4EU 36106 36663 76 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 136636 136956 23 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold1173 WUBlastX LTR_DIRS 120161 120367 86 + . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LTR_DIRS 13108 13332 20 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Pao 33534 34199 91 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX DNA_hAT-Tip100 107736 108155 116 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold321 WUBlastX LINE_L1 168438 168773 57 - . . . . . -1 -1 -1 . . . scaffold308 WUBlastX LINE_CR1 278290 278574 72 + . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX RC_Helitron 188656 188883 48 + . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX DNA_Maverick 132408 132596 22 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L1-Tx1 76739 77224 49 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_CR1 245200 245490 121 + . . . . . -1 -1 -1 . . . scaffold1290 WUBlastX LTR_Gypsy-Cigr 10276 10923 103 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LTR_Gypsy 874813 875730 100 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_Penelope 404598 404882 42 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold1766 WUBlastX LINE_L1 101635 101967 101 - . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX DNA_TcMar-Tc1 25961 26065 26 + . . . . . -1 -1 -1 . . . scaffold42408 WUBlastX LINE_L1-Tx1 113042 113380 46 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold1188 WUBlastX LINE_CR1-L2 89103 89228 81 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Gypsy 445610 445831 63 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_Crypton 99545 100498 69 - . . . . . -1 -1 -1 . . . scaffold34742 WUBlastX DNA_Crypton 694 1608 76 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_L1 209771 209968 46 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold1327 WUBlastX LINE_L1-Tx1 293934 294224 23 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy 409517 409639 20 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX RC_Helitron 39187 41280 131 - . . . . . -1 -1 -1 . . . scaffold41732 WUBlastX LINE_L2 58448 59113 56 - . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold424 WUBlastX DNA_Kolobok-Hyd 125057 125233 51 - . . scaffold424 GLEAN mRNA 124459 130627 0.999672 - . ID=CGI_10014354; scaffold424 WUBlastX DNA_Kolobok-Hyd 125537 125878 69 - . . scaffold424 GLEAN mRNA 124459 130627 0.999672 - . ID=CGI_10014354; scaffold1782 WUBlastX DNA_TcMar-Fot1 88108 88389 102 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_RTE-BovB 5561 5677 26 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_Maverick 113889 114209 103 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_Maverick 114199 114447 48 - . . . . . -1 -1 -1 . . . scaffold41572 WUBlastX LINE_RTE-X 12489 12770 101 - . . . . . -1 -1 -1 . . . scaffold894 WUBlastX LINE_L1-Tx1 168841 169221 84 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LTR_Pao 141029 141133 51 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 806043 807479 1039 - . . scaffold86 GLEAN mRNA 805962 806681 0.999999 - . ID=CGI_10028176; scaffold86 WUBlastX LTR_Gypsy 806043 807479 1039 - . . scaffold86 GLEAN mRNA 804736 823787 1 + . ID=CGI_10028175; scaffold42770 WUBlastX LINE_CR1 59115 59501 171 - . . . . . -1 -1 -1 . . . C35794 WUBlastX LINE_L2 14013 14249 44 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_RTE-X 869230 869406 63 - . . . . . -1 -1 -1 . . . scaffold42030 WUBlastX LINE_RTE-X 78622 78963 52 + . . scaffold42030 GLEAN mRNA 73599 103190 0.98897 + . ID=CGI_10006046; scaffold1698 WUBlastX LINE_CR1-L2 125050 125613 91 + . . scaffold1698 GLEAN mRNA 115530 127809 0.999999 + . ID=CGI_10019370; scaffold1075 WUBlastX LTR_Pao 135229 135450 160 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 1107 1370 56 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Ngaro 12986 13330 150 - . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_RTE-BovB 288351 288737 88 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_TcMar-Tc1 102044 102343 176 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_TcMar-Tc1 694012 694311 176 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 375623 375883 190 - . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold760 WUBlastX LINE_L1-Tx1 130774 130974 75 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold142 WUBlastX LTR_Gypsy-Cigr 1226812 1227249 254 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 697838 698011 49 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Pao 197734 197958 209 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy 89576 89914 42 - . . . . . -1 -1 -1 . . . scaffold41772 WUBlastX LTR_Gypsy 99757 99996 56 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 34568 34918 77 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold544 WUBlastX DNA_TcMar-Pogo 739066 739362 144 + . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold236 WUBlastX DNA_TcMar-Marin 483332 483610 61 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 334701 334814 29 + . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA 46400 46741 93 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LTR_Gypsy-Cigr 280520 282820 1337 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_RTE-X 791584 794847 1029 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 256322 259585 1029 + . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_RTE-X 63627 66890 1028 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy-Cigr 39847 40101 113 - . . . . . -1 -1 -1 . . . scaffold1680 WUBlastX DNA_hAT 28219 28887 163 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Pao 258122 258199 20 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 108323 108931 150 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LTR_Gypsy 196057 196986 110 - . . scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold422 WUBlastX LTR_Gypsy 403767 404183 123 - . . . . . -1 -1 -1 . . . C32056 WUBlastX LINE_L1 5802 5966 74 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-X 331691 331753 21 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX DNA_Sola 13657 14271 200 + . . . . . -1 -1 -1 . . . scaffold838 WUBlastX LTR_Gypsy-Cigr 25448 25693 143 + . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX DNA_hAT-Ac 106010 106384 50 + . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LTR_Gypsy-Cigr 82316 84490 957 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 264433 264528 53 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Harbinger 493166 493333 57 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_I 411798 412280 38 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold1573 WUBlastX LINE_RTE-X 38635 38838 93 - . . . . . -1 -1 -1 . . . scaffold42144 WUBlastX LINE_RTE-X 124408 124779 156 + . . scaffold42144 GLEAN mRNA 104437 125325 0.993907 - . ID=CGI_10006248; scaffold222 WUBlastX DNA_Harbinger 154638 155036 181 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-X 32118 32351 102 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 450244 451635 799 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 451628 452731 677 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 222945 224906 1619 - . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_L1-Tx1 210767 211351 366 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_L1-Tx1 212122 214077 749 + . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_CR1-L2 706830 707306 96 - . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LTR_Pao 114491 114808 56 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Ngaro 1053238 1053441 26 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Ngaro 1053728 1054009 88 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_DIRS 428012 428557 158 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_RTE-X 233638 234132 137 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_Maverick 470033 470479 161 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_En-Spm 194161 194505 100 - . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_Zator 335877 338735 1397 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_Zator 338886 339053 53 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX DNA_Zator 340067 340234 54 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Pao 256947 257510 58 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Gypsy 111139 111867 524 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 111846 112427 359 + . . scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold867 WUBlastX LTR_Gypsy-Cigr 820697 822319 677 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Gypsy-Cigr 500747 500842 45 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_RTE-X 122285 123454 596 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_RTE-X 123451 124605 718 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_RTE-X 124835 125674 345 + . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LTR_Ngaro 137942 138583 187 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold41206 WUBlastX LTR_Gypsy 58831 59064 77 + . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_CR1-L2 2147 2248 40 - . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 19854 20579 153 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_TcMar-Tigge 210232 210393 39 - . . . . . -1 -1 -1 . . . scaffold569 WUBlastX DNA_Maverick 197938 198342 258 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX DNA_Maverick 200336 201193 728 + . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LTR_Ngaro 171914 172342 191 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold113 WUBlastX LINE_L1 48704 49105 211 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L1 49077 49142 25 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LINE_RTE-X 4108 4317 129 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy-Cigr 495244 496620 755 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Pao 703027 703824 44 + . . scaffold854 GLEAN mRNA 698978 729843 0.21294 + . ID=CGI_10022264; scaffold32064 WUBlastX DNA_IS4EU 5653 6366 175 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_IS4EU 95514 95792 115 + . . . . . -1 -1 -1 . . . scaffold1492 WUBlastX LINE_L1-Tx1 82815 83192 85 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX DNA_En-Spm 366003 366758 138 + . . . . . -1 -1 -1 . . . scaffold373 WUBlastX LTR_Gypsy 721 1956 183 - . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX DNA_IS4EU 62089 62367 51 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 457895 458200 105 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_TcMar-Fot1 115708 116517 207 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold698 WUBlastX LINE_CR1 299928 300065 27 + . . . . . -1 -1 -1 . . . scaffold258 WUBlastX LINE_CR1 427338 427526 92 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_IS4EU 24887 25108 40 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 26433 26867 97 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold35966 WUBlastX LINE_L1 24385 25047 176 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LTR_Gypsy 88173 91562 2352 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 49069 49320 67 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 49403 49792 174 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 62194 63261 165 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L2 1216428 1216892 291 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1634 WUBlastX DNA_Kolobok-IS4 39669 40280 102 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LTR_Gypsy 773072 774292 310 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 95687 96694 237 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 76649 77110 179 + . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LTR_Ngaro 53846 54445 322 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 83118 83915 338 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-X 2054 2305 149 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L2 374393 375397 299 + . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX LTR_Ngaro 20249 20416 135 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Gypsy 304435 304872 87 + . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_RTE-X 11395 11550 90 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold817 WUBlastX DNA_hAT-Ac 210463 210720 101 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_Gypsy 120427 120612 33 - . . scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120427 120612 33 - . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold146 WUBlastX LINE_RTE-X 381063 381221 35 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX DNA_Maverick 64041 64235 121 - . . . . . -1 -1 -1 . . . scaffold837 WUBlastX LTR_Gypsy 7905 8645 341 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L2 165517 166383 134 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 201371 201520 47 - . . . . . -1 -1 -1 . . . scaffold39976 WUBlastX LTR_Pao 44911 45195 27 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 593469 594590 348 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_Gypsy 251654 251869 64 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold502 WUBlastX LTR_Gypsy 180087 180215 37 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1-Tx1 225072 225353 184 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1-Tx1 225421 226407 200 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX DNA_Kolobok-IS4 30336 31724 346 + . . scaffold315 GLEAN mRNA 30489 37096 0.901071 + . ID=CGI_10020398; scaffold1397 WUBlastX DNA_Sola 306950 307687 200 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_Sola 307579 308073 70 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_Sola 308034 308330 32 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 400777 401019 152 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 401259 401543 110 - . . . . . -1 -1 -1 . . . scaffold30314 WUBlastX LINE_RTE-X 3996 4976 113 - . . . . . -1 -1 -1 . . . scaffold39464 WUBlastX LTR_DIRS 7606 8520 415 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LTR_DIRS 416940 417866 453 + . . scaffold588 GLEAN mRNA 413724 423614 0.849231 + . ID=CGI_10016228; scaffold502 WUBlastX DNA_TcMar-Tc1 752885 753415 257 + . . . . . -1 -1 -1 . . . C30662 WUBlastX LINE_L2 1911 2984 382 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-BovB 678563 678949 126 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-BovB 679267 680109 179 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 76445 76645 65 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 89526 90008 184 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 135073 135564 40 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 135953 136132 44 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Pao 22747 24084 396 - . . . . . -1 -1 -1 . . . scaffold38898 WUBlastX LTR_Ngaro 3551 4099 321 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Ngaro 618066 618335 74 - . . . . . -1 -1 -1 . . . C33084 WUBlastX DNA_hAT-hATw 5049 5399 80 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_RTE-X 442833 443102 46 + . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Gypsy 16242 17078 543 + . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LTR_Pao 186291 186671 158 - . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LTR_Pao 187730 188029 234 - . . . . . -1 -1 -1 . . . scaffold224 WUBlastX DNA_TcMar-Tc1 53068 53259 124 - . . scaffold224 GLEAN mRNA 41298 72438 0.99912 - . ID=CGI_10003616; scaffold224 WUBlastX DNA_TcMar-Tc1 53642 54097 91 - . . scaffold224 GLEAN mRNA 41298 72438 0.99912 - . ID=CGI_10003616; scaffold368 WUBlastX DNA_IS4EU 90561 91697 556 - . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold1862 WUBlastX DNA_IS4EU 660073 661257 557 - . . scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold32488 WUBlastX LINE_CR1 114 644 319 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_Maverick 9608 10204 398 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 423994 424134 49 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold1241 WUBlastX LTR_Ngaro 146582 146917 245 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_TcMar-Pogo 213041 213682 360 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_L1-Tx1 129046 129882 172 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_L1-Tx1 130514 131560 85 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy-Cigr 331300 331929 211 + . . . . . -1 -1 -1 . . . scaffold34894 WUBlastX LINE_Penelope 14393 14467 23 - . . . . . -1 -1 -1 . . . scaffold1708 WUBlastX LTR_Ngaro 69717 69818 76 + . . . . . -1 -1 -1 . . . scaffold43084 WUBlastX LINE_Penelope 3387 4136 497 - . . scaffold43084 GLEAN mRNA 1752 8491 0.988218 - . ID=CGI_10008563; scaffold1593 WUBlastX LINE_Penelope 45148 45627 212 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_L1 24518 25081 238 - . . . . . -1 -1 -1 . . . scaffold33610 WUBlastX LTR_Gypsy 12507 12818 35 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-BovB 113958 114254 146 + . . . . . -1 -1 -1 . . . C22928 WUBlastX LINE_L1-Tx1 5 1843 594 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_RTE-X 111476 112273 106 - . . scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold458 WUBlastX DNA_Sola 63294 63632 132 - . . . . . -1 -1 -1 . . . scaffold371 WUBlastX LINE_RTE-X 38484 40019 631 + . . . . . -1 -1 -1 . . . scaffold371 WUBlastX LINE_RTE-X 40306 40482 57 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX RC_Helitron 178913 179056 33 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LTR_Gypsy 277873 278070 64 - . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_RTE-X 113371 114903 658 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_Gypsy 98426 99055 71 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 297427 297720 115 - . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L1-Tx1 69953 70150 72 - . . scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold43794 WUBlastX LTR_Copia 147006 147110 38 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Chapaev 936535 936741 24 + . . scaffold204 GLEAN mRNA 936505 937175 0.911804 + . ID=CGI_10026139; scaffold580 WUBlastX LTR_Pao 543245 543409 34 - . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold38210 WUBlastX LTR_Pao 44192 44710 28 - . . scaffold38210 GLEAN mRNA 43454 45043 0.810408 - . ID=CGI_10002675; scaffold43630 WUBlastX LTR_Copia 277573 277767 50 - . . . . . -1 -1 -1 . . . scaffold715 WUBlastX LTR_DIRS 2570 2701 43 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_CR1 514168 514509 56 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_CR1 623337 623459 22 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 1079786 1079854 31 + . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_L2 112155 112250 20 - . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX LINE_CR1 158284 158523 30 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_L2 146245 146328 25 - . . scaffold619 GLEAN mRNA 133305 165039 0.859619 - . ID=CGI_10025755; C29576 WUBlastX LTR_Gypsy 1520 1807 32 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LTR_Gypsy-Cigr 141593 142186 59 - . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX LINE_RTE 20407 20736 74 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LTR_Gypsy 576554 576709 40 - . . . . . -1 -1 -1 . . . scaffold1368 WUBlastX LINE_L2 32666 33397 26 - . . scaffold1368 GLEAN mRNA 31913 33640 1 - . ID=CGI_10002238; scaffold38284 WUBlastX LTR_Gypsy 41805 42110 39 - . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LTR_Gypsy 55501 55623 32 + . . . . . -1 -1 -1 . . . C27890 WUBlastX LTR_Gypsy 3207 3590 25 - . . . . . -1 -1 -1 . . . C27890 WUBlastX LTR_Gypsy 3801 3926 25 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 4347 4553 39 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Tc2 129876 130292 59 - . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX DNA_Kolobok 118721 118927 69 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold240 WUBlastX LINE_L1 26873 27088 46 - . . . . . -1 -1 -1 . . . scaffold40164 WUBlastX LINE_L1-Tx1 7751 7945 63 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold221 WUBlastX LTR_Gypsy 82832 83374 63 + . . scaffold221 GLEAN mRNA 82988 83629 0.999661 + . ID=CGI_10008345; scaffold531 WUBlastX LTR_Gypsy 338154 338261 32 - . . . . . -1 -1 -1 . . . scaffold35446 WUBlastX LTR_ERV1 18141 18650 57 - . . scaffold35446 GLEAN mRNA 11417 21109 0.682042 + . ID=CGI_10001510; scaffold1373 WUBlastX DNA_TcMar-Tc1 133323 133409 63 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_RTE-X 152542 152670 28 + . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 135711 135881 30 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 408665 408760 33 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_RTE-X 183507 183722 60 - . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX LINE_RTE-X 362424 362579 25 - . . . . . -1 -1 -1 . . . scaffold40186 WUBlastX LINE_RTE-X 13210 13602 29 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 258846 259031 42 - . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX LINE_RTE-X 24613 24885 26 + . . scaffold1385 GLEAN mRNA 22815 31330 0.957817 - . ID=CGI_10013834; scaffold1751 WUBlastX LINE_RTE-X 15673 15969 27 + . . scaffold1751 GLEAN mRNA 1921 19795 0.705782 - . ID=CGI_10010082; scaffold43878 WUBlastX LINE_RTE-X 79758 79832 37 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 217135 217245 50 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 217500 217619 20 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 224232 224411 41 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_Sola 342563 342703 90 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX DNA_Sola 350238 350318 40 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LTR_Gypsy 762204 762314 25 - . . scaffold625 GLEAN mRNA 750522 771270 0.999954 - . ID=CGI_10023437; scaffold41762 WUBlastX DNA_TcMar-Tc1 19303 19431 23 - . . . . . -1 -1 -1 . . . scaffold41762 WUBlastX DNA_TcMar-Tc1 19706 19975 37 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L1-Tx1 346234 346623 55 + . . scaffold786 GLEAN mRNA 340138 347810 1 + . ID=CGI_10013708; scaffold117 WUBlastX LINE_L2 53292 53525 32 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold44006 WUBlastX LINE_CR1-L2 430338 430745 42 + . . scaffold44006 GLEAN mRNA 422154 432525 0.999395 - . ID=CGI_10015593; scaffold1219 WUBlastX LINE_CR1-L2 318778 318945 51 + . . . . . -1 -1 -1 . . . scaffold250 WUBlastX LTR_Ngaro 30198 30371 21 + . . . . . -1 -1 -1 . . . scaffold596 WUBlastX LTR_Gypsy 210129 210215 36 + . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold115 WUBlastX DNA_IS4EU 124696 125511 66 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX DNA_Kolobok-Hyd 689443 689514 22 - . . scaffold156 GLEAN mRNA 669682 693584 0.721042 - . ID=CGI_10026516; scaffold40246 WUBlastX DNA_TcMar-Tc2 25473 25769 77 - . . . . . -1 -1 -1 . . . scaffold992 WUBlastX LINE_L1-Tx1 168839 168937 24 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_Rex-Babar 525974 526393 69 + . . . . . -1 -1 -1 . . . scaffold40564 WUBlastX LINE_CR1 6397 6636 81 + . . . . . -1 -1 -1 . . . scaffold200 WUBlastX LTR_Gypsy 46242 46961 64 + . . scaffold200 GLEAN mRNA 44225 49093 0.999107 + . ID=CGI_10006224; scaffold1698 WUBlastX LTR_Copia 75365 75445 27 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Gypsy 476329 476877 59 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold1785 WUBlastX LINE_I 72975 73493 22 - . . scaffold1785 GLEAN mRNA 65260 86762 0.990934 - . ID=CGI_10024355; C35006 WUBlastX DNA_IS4EU 1349 1549 32 - . . . . . -1 -1 -1 . . . C35006 WUBlastX DNA_IS4EU 2106 2204 29 - . . C35006 GLEAN mRNA 2016 7654 0.999998 - . ID=CGI_10001396; scaffold723 WUBlastX LTR_Gypsy 220952 221350 68 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L1 843055 843504 40 + . . scaffold1785 GLEAN mRNA 838180 855518 0.197068 - . ID=CGI_10024401; scaffold443 WUBlastX LINE_L1 463861 464112 20 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LINE_Penelope 165703 166212 44 + . . scaffold1081 GLEAN mRNA 151167 168373 0.603491 + . ID=CGI_10007686; scaffold35124 WUBlastX LINE_RTE-BovB 4239 4541 27 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-X 854192 854623 55 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 1194834 1195067 46 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_L1-Tx1 718111 718458 33 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LINE_L1-Tx1 275640 276038 42 - . . scaffold581 GLEAN mRNA 217971 276528 0.207483 - . ID=CGI_10013742; scaffold12 WUBlastX LTR_Gypsy 351148 351246 35 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold1262 WUBlastX LTR_Gypsy 544772 545047 101 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX DNA_hAT-Tip100 238869 239075 94 - . . scaffold156 GLEAN mRNA 233811 241733 0.990897 + . ID=CGI_10026484; scaffold710 WUBlastX LINE_RTE-X 6230 6388 74 + . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_RTE-BovB 108867 108947 25 + . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold419 WUBlastX DNA_PiggyBac 39924 39983 39 + . . scaffold419 GLEAN mRNA 39110 43712 0.992133 + . ID=CGI_10028318; scaffold33486 WUBlastX LINE_L1-Tx1 1212 1460 36 + . . . . . -1 -1 -1 . . . scaffold35070 WUBlastX DNA_PiggyBac 12199 12459 39 + . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX LINE_CR1-L2 97494 97691 58 + . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX LTR_Gypsy 84946 84978 21 + . . scaffold1427 GLEAN mRNA 83286 88793 0.375742 + . ID=CGI_10005230; scaffold331 WUBlastX DNA_En-Spm 38490 38576 20 - . . . . . -1 -1 -1 . . . C29982 WUBlastX LTR_Gypsy 6197 6403 107 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 542005 542286 98 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L1 609806 609910 23 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_Sola 450004 450231 90 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX DNA_Sola 450638 450760 36 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX RC_Helitron 184284 184346 31 + . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX DNA_TcMar-Tc1 31894 32022 41 - . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX DNA_TcMar-Tc1 32006 32230 43 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_CR1-L2 141680 141817 21 - . . . . . -1 -1 -1 . . . scaffold1286 WUBlastX LINE_CR1 4799 5122 59 - . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold33518 WUBlastX DNA_TcMar-Tc1 2326 2697 100 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L2 24187 24510 101 - . . scaffold1024 GLEAN mRNA 24193 35895 0.99814 - . ID=CGI_10028518; scaffold170 WUBlastX LTR_Gypsy 120077 120217 68 + . . . . . -1 -1 -1 . . . scaffold253 WUBlastX LTR_Gypsy 1516 1746 39 - . . . . . -1 -1 -1 . . . scaffold34894 WUBlastX DNA_Harbinger 1378 1644 123 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_hAT-hATw 391919 392689 65 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold964 WUBlastX DNA_hAT-Tip100 18143 18352 126 - . . . . . -1 -1 -1 . . . C28512 WUBlastX DNA_Kolobok-IS4 3730 4095 43 + . . C28512 GLEAN mRNA 3694 4575 1 + . ID=CGI_10000437; C28512 WUBlastX DNA_Kolobok-IS4 4435 4572 82 + . . C28512 GLEAN mRNA 3694 4575 1 + . ID=CGI_10000437; scaffold301 WUBlastX LINE_Penelope 627095 627370 76 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 347401 347457 26 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 736785 736814 23 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Ngaro 226165 226251 32 - . . . . . -1 -1 -1 . . . scaffold43344 WUBlastX LTR_Gypsy 232257 232376 73 + . . . . . -1 -1 -1 . . . scaffold43344 WUBlastX LTR_Gypsy 232506 232601 65 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX DNA_hAT-Ac 48545 49264 113 + . . . . . -1 -1 -1 . . . scaffold39074 WUBlastX LINE_R2-Hero 47560 47628 46 - . . . . . -1 -1 -1 . . . scaffold39074 WUBlastX LINE_R2-Hero 47971 48030 20 - . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_Kolobok 80968 81216 113 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_Penelope 186515 186862 88 - . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_RTE-X 85710 85763 31 - . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold852 WUBlastX LINE_L1-Tx1 185352 185525 78 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX LTR_Pao 81173 81637 132 + . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX LINE_L2 37783 38127 102 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_CR1-L2 304449 304718 82 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_CR1-L2 215288 215515 118 + . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold664 WUBlastX LTR_Ngaro 577636 577947 70 - . . scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold86 WUBlastX LINE_CR1 574582 574938 92 - . . . . . -1 -1 -1 . . . scaffold41798 WUBlastX RC_Helitron 126038 126706 131 + . . . . . -1 -1 -1 . . . scaffold37730 WUBlastX LINE_L1 43382 43816 76 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 1675560 1675838 101 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_RTE-X 416400 416657 80 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-BovB 507912 508127 84 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-X 218729 218818 54 - . . . . . -1 -1 -1 . . . scaffold40744 WUBlastX DNA_Sola 74334 74585 58 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX DNA_TcMar-Tc1 11323 11688 69 - . . . . . -1 -1 -1 . . . scaffold894 WUBlastX LINE_L1-Tx1 181431 181766 96 + . . scaffold894 GLEAN mRNA 171936 185580 0.999624 + . ID=CGI_10008548; scaffold894 WUBlastX LINE_L1-Tx1 183584 183919 96 + . . scaffold894 GLEAN mRNA 171936 185580 0.999624 + . ID=CGI_10008548; scaffold406 WUBlastX LINE_L1-Tx1 165705 165992 99 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 795846 796475 39 - . . . . . -1 -1 -1 . . . scaffold39198 WUBlastX LINE_L1-Tx1 27326 27670 75 - . . . . . -1 -1 -1 . . . scaffold39198 WUBlastX LINE_L1-Tx1 35018 35362 75 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Harbinger 859792 860211 79 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_Harbinger 325667 325912 132 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy 179544 180275 115 - . . scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold410 WUBlastX DNA_Kolobok 649030 649275 123 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_R1 651959 652027 21 + . . scaffold128 GLEAN mRNA 640571 661683 0.836156 - . ID=CGI_10021536; scaffold332 WUBlastX LINE_L1 150721 150852 46 + . . . . . -1 -1 -1 . . . C28902 WUBlastX LTR_Ngaro 5519 6004 86 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 57846 58544 125 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 234564 234980 120 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_RTE-BovB 411977 412147 21 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX DNA_TcMar-Tc2 17207 17632 123 + . . . . . -1 -1 -1 . . . scaffold1098 WUBlastX LINE_L1-Tx1 52739 53194 61 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LTR_Pao 98255 98389 71 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_Gypsy-Cigr 98516 99025 118 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_Gypsy-Cigr 99036 99173 43 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX DNA_IS4EU 413069 413641 94 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_L1 237724 238560 78 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold885 WUBlastX LINE_L1 58131 58949 130 - . . . . . -1 -1 -1 . . . C30694 WUBlastX LTR_Gypsy-Cigr 6790 8247 955 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1 366639 367226 153 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_CR1-L2 97719 98030 96 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX DNA_Harbinger 70200 71009 103 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_Proto2 668743 669534 100 - . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LINE_RTE-X 232075 232503 108 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_CR1-L2 90900 91928 236 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_TcMar-Tc1 4748 4993 59 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Pao 505057 505443 43 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Pao 36053 36256 84 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Pao 36250 36573 115 + . . . . . -1 -1 -1 . . . C21380 WUBlastX LINE_Penelope 947 1390 83 - . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LINE_Jockey 98832 99500 110 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1-Tx1 347009 347620 68 - . . scaffold4 GLEAN mRNA 343942 353209 0.759631 + . ID=CGI_10021174; scaffold4 WUBlastX LINE_L1-Tx1 347692 349815 809 - . . scaffold4 GLEAN mRNA 343942 353209 0.759631 + . ID=CGI_10021174; scaffold1039 WUBlastX LINE_CR1 11170 12408 275 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 524619 525428 583 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 526358 526696 194 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 341592 341999 311 - . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 71752 72369 189 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 43485 43835 116 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_En-Spm 614837 615205 64 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold754 WUBlastX DNA_Kolobok-IS4 140903 141508 157 + . . scaffold754 GLEAN mRNA 139769 141980 1 - . ID=CGI_10014067; scaffold1782 WUBlastX DNA_TcMar-Fot1 89992 90225 60 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_PiggyBac 491936 492430 156 + . . . . . -1 -1 -1 . . . C31300 WUBlastX LTR_Gypsy 8690 8983 24 - . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LTR_Ngaro 32765 33562 165 - . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX LTR_Ngaro 345962 346693 98 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX DNA_Harbinger 134364 134591 121 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 252570 252755 84 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_IS4EU 553397 553741 71 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_IS4EU 553908 554441 36 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_IS4EU 9058 9243 59 + . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_IS4EU 10152 10448 128 + . . . . . -1 -1 -1 . . . scaffold42568 WUBlastX DNA_NOF? 35035 35700 128 + . . scaffold42568 GLEAN mRNA 21645 48345 0.50892 + . ID=CGI_10007265; scaffold481 WUBlastX DNA_Sola 1214346 1215020 111 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold43146 WUBlastX LINE_L1-Tx1 197714 198019 50 + . . scaffold43146 GLEAN mRNA 193579 199513 0.963019 - . ID=CGI_10009047; C30608 WUBlastX LTR_Gypsy 2483 2956 144 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 797158 798249 59 + . . scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold1387 WUBlastX LTR_Copia 1 903 719 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_En-Spm 294965 295297 145 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_En-Spm 295703 295825 95 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_Gypsy-Cigr 250398 251159 193 - . . scaffold925 GLEAN mRNA 245750 251543 0.996749 - . ID=CGI_10017422; scaffold40584 WUBlastX DNA_IS4EU 34590 34955 205 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX DNA_IS4EU 274098 274475 118 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 335250 335819 148 + . . . . . -1 -1 -1 . . . scaffold1630 WUBlastX LINE_L1-Tx1 293842 294828 99 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 61880 62092 139 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 589259 591490 1563 + . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_CR1 253771 253917 21 - . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_CR1 254696 254770 29 - . . . . . -1 -1 -1 . . . scaffold1358 WUBlastX LINE_CR1 255190 256263 29 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1 235230 235472 57 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 70787 71206 100 - . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_RTE-X 348059 348412 172 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 612660 613628 217 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX DNA_hAT-Ac 187253 187579 230 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LTR_Gypsy 544697 545002 125 + . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LTR_Ngaro 1352 2194 85 - . . . . . -1 -1 -1 . . . scaffold42032 WUBlastX DNA_IS4EU 140247 140474 109 - . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1 17798 17914 20 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold971 WUBlastX LTR_Ngaro 50752 51210 54 + . . . . . -1 -1 -1 . . . scaffold971 WUBlastX LTR_Ngaro 51931 52278 86 + . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX LTR_Gypsy 11946 13565 839 + . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 41799 41999 47 - . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LTR_Gypsy 155820 155930 21 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_DIRS 97847 97972 97 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 24077 24265 20 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold42592 WUBlastX LINE_L2 1991 2509 203 + . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX LINE_L2 109874 110905 139 + . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold1866 WUBlastX LINE_RTE-X 484046 484825 175 - . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LTR_Pao 25415 26242 326 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_L2 723560 723727 52 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold156 WUBlastX LINE_L2 723726 725780 1152 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold156 WUBlastX LINE_L2 725782 726705 535 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold1671 WUBlastX LTR_Pao 111306 111695 30 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Ngaro 79229 79708 258 - . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold685 WUBlastX LINE_RTE-X 52660 52998 192 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX LINE_RTE-X 52995 53186 37 - . . scaffold685 GLEAN mRNA 53096 59872 1 + . ID=CGI_10004491; C32728 WUBlastX DNA_Sola 3365 3640 180 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Gypsy 655437 659246 2176 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L1-Tx1 889524 889736 31 - . . scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold42880 WUBlastX DNA_PiggyBac 115103 115294 125 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_PiggyBac 115459 115917 163 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LINE_CR1 55916 56587 196 + . . scaffold43920 GLEAN mRNA 44281 62633 0.726327 + . ID=CGI_10013987; scaffold20 WUBlastX LINE_CR1 211482 212153 196 + . . scaffold20 GLEAN mRNA 206236 212825 0.728523 + . ID=CGI_10023565; scaffold1576 WUBlastX LINE_CR1 94089 94760 196 + . . . . . -1 -1 -1 . . . scaffold38292 WUBlastX LTR_Ngaro 34026 34916 222 - . . scaffold38292 GLEAN mRNA 26899 37380 0.771739 - . ID=CGI_10002691; scaffold1459 WUBlastX DNA_TcMar-Marin 22331 22795 98 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Pao 34779 35453 58 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1143568 1143972 203 - . . . . . -1 -1 -1 . . . scaffold76 WUBlastX LTR_Gypsy 28524 28928 320 + . . . . . -1 -1 -1 . . . scaffold35094 WUBlastX LINE_L1-Tx1 21483 22484 204 - . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Pao 18303 18788 373 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LTR_Gypsy 124168 128310 2394 - . . scaffold305 GLEAN mRNA 114232 133246 0.986225 - . ID=CGI_10019117; scaffold419 WUBlastX LTR_Gypsy-Cigr 681034 684744 2539 - . . scaffold419 GLEAN mRNA 671072 685906 0.998967 - . ID=CGI_10028358; scaffold1532 WUBlastX LTR_Gypsy 307487 309628 1746 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_En-Spm 92605 92820 41 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX DNA_En-Spm 92882 93139 104 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX LTR_Gypsy 59230 61605 1319 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L1-Tx1 3 707 301 - . . . . . -1 -1 -1 . . . scaffold37432 WUBlastX LINE_L1-Tx1 2238 3239 116 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LTR_Gypsy 6346 6660 73 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold504 WUBlastX LTR_Gypsy 6656 7048 295 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold43108 WUBlastX LTR_Gypsy 123823 124101 21 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX DNA_Kolobok 230557 230817 104 + . . scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold33704 WUBlastX LTR_DIRS 9578 9766 84 + . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 233509 234567 125 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 13608 13874 78 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_CR1-L2 144631 144822 28 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 268941 269372 179 + . . . . . -1 -1 -1 . . . C30084 WUBlastX LINE_Penelope 4802 5092 180 + . . . . . -1 -1 -1 . . . C30084 WUBlastX LINE_Penelope 5218 5799 81 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 318908 319108 82 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 313381 313461 20 + . . . . . -1 -1 -1 . . . scaffold404 WUBlastX LTR_Gypsy 25367 26086 243 - . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LTR_Gypsy 254421 254756 80 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L1 539707 540486 207 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 1050924 1051721 33 + . . . . . -1 -1 -1 . . . scaffold1481 WUBlastX DNA_Helitron 60777 62843 240 - . . . . . -1 -1 -1 . . . scaffold265 WUBlastX LTR_Ngaro 66239 67180 336 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold39470 WUBlastX LTR_Ngaro 20254 21159 320 - . . scaffold39470 GLEAN mRNA 18519 32880 0.998788 - . ID=CGI_10003379; scaffold1087 WUBlastX LTR_Gypsy 14788 15588 415 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold343 WUBlastX DNA_TcMar-Fot1 669157 670251 395 - . . . . . -1 -1 -1 . . . scaffold605 WUBlastX LINE_L1-Tx1 92268 92918 419 + . . . . . -1 -1 -1 . . . scaffold858 WUBlastX LINE_RTE-X 8260 8631 125 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 1223782 1224813 389 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_L1-Tx1 225187 225342 53 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_L1-Tx1 225296 225973 263 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 115165 115314 56 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 115286 115474 103 + . . . . . -1 -1 -1 . . . scaffold42568 WUBlastX LINE_RTE-BovB 9213 9596 109 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-BovB 812810 812983 23 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LINE_L1-Tx1 213087 213824 434 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_Maverick 1359644 1361077 413 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-X 238436 239269 99 - . . . . . -1 -1 -1 . . . C31988 WUBlastX LINE_L1 2522 2605 20 - . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LINE_CR1-L2 83358 83954 331 + . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LTR_Ngaro 24091 24990 415 + . . scaffold36806 GLEAN mRNA 22975 34393 0.994851 + . ID=CGI_10002150; scaffold827 WUBlastX LINE_L1-Tx1 32518 32634 20 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_Helitron 915114 915299 74 - . . scaffold337 GLEAN mRNA 912502 926173 0.999981 - . ID=CGI_10028087; scaffold1559 WUBlastX LINE_CR1 55301 56410 312 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 6006 6416 91 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LTR_Ngaro 310602 311399 304 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_Harbinger 344178 344462 205 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_Harbinger 344480 345067 315 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_DIRS 79509 80159 295 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX DNA_TcMar-Tc1 459342 459683 34 + . . scaffold586 GLEAN mRNA 448256 475873 0.905445 - . ID=CGI_10018008; scaffold586 WUBlastX DNA_TcMar-Tc1 459632 460252 380 + . . scaffold586 GLEAN mRNA 448256 475873 0.905445 - . ID=CGI_10018008; scaffold1041 WUBlastX LTR_Gypsy 31823 32110 61 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1-Tx1 197648 197968 110 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1-Tx1 198169 199083 406 - . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LINE_L1-Tx1 93367 93621 53 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_hAT-Ac 93898 94077 36 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold1535 WUBlastX LINE_Penelope 40853 41593 84 - . . . . . -1 -1 -1 . . . C29414 WUBlastX LINE_RTE-X 5843 6577 269 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_TcMar-Fot1 801599 803212 578 + . . scaffold962 GLEAN mRNA 772898 820857 0.754198 - . ID=CGI_10027665; scaffold99 WUBlastX DNA_Sola 178671 178949 110 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_hAT-Tip100 213553 213714 81 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_hAT-Tip100 213758 214399 299 + . . . . . -1 -1 -1 . . . scaffold38274 WUBlastX LINE_RTE-X 11895 12443 322 - . . . . . -1 -1 -1 . . . scaffold1261 WUBlastX LINE_L1-Tx1 21862 22257 85 - . . . . . -1 -1 -1 . . . scaffold1261 WUBlastX LINE_L1-Tx1 23386 24591 460 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 559059 559208 62 + . . . . . -1 -1 -1 . . . scaffold41452 WUBlastX LTR_Gypsy 94608 95648 842 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LINE_RTE-BovB 15053 15208 56 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_RTE-X 57152 57838 183 + . . . . . -1 -1 -1 . . . scaffold38438 WUBlastX LTR_Pao 5296 5568 258 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_Gypsy-Cigr 673102 673908 551 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX LTR_Pao 71075 71584 192 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 426563 428605 808 - . . scaffold257 GLEAN mRNA 408517 430332 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_DIRS 426563 428605 808 - . . scaffold257 GLEAN mRNA 415447 429822 0.479397 + . ID=CGI_10027911; C33592 WUBlastX LTR_Gypsy 786 1688 215 + . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX DNA_En-Spm 94180 94710 412 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_hAT-Tip100 34735 34857 40 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_Academ 183841 184122 27 - . . scaffold954 GLEAN mRNA 183919 184182 0.57353 - . ID=CGI_10010744; scaffold192 WUBlastX LTR_Pao 553442 553606 81 - . . scaffold192 GLEAN mRNA 531371 556893 0.543544 + . ID=CGI_10023721; scaffold973 WUBlastX LTR_Gypsy 217901 218200 75 - . . . . . -1 -1 -1 . . . scaffold39580 WUBlastX LINE_CR1-L2 55054 55230 58 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 325777 325944 74 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_ERVK 46898 47146 54 - . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_En-Spm 191083 191322 57 + . . scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold1822 WUBlastX LTR_Gypsy 25569 25754 30 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 10913 11122 55 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_DIRS 147406 147477 30 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_DIRS 147921 148043 30 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_hAT-Ac 132833 133123 62 + . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX RC_Helitron 89153 89269 21 - . . scaffold1858 GLEAN mRNA 89030 106039 0.999249 - . ID=CGI_10010446; scaffold145 WUBlastX DNA_Kolobok-IS4 533014 533205 40 - . . . . . -1 -1 -1 . . . scaffold35860 WUBlastX LTR_Gypsy 2195 2314 34 + . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Harbinger 45983 46156 41 + . . scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold40134 WUBlastX DNA_Harbinger 27904 28236 32 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold626 WUBlastX DNA_Kolobok 580119 580352 81 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_Penelope 396807 396998 31 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_Penelope 49745 50032 56 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_P 338607 338819 52 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX DNA_MuDR 78682 78939 64 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_MuDR 1071827 1072033 52 + . . . . . -1 -1 -1 . . . scaffold1247 WUBlastX DNA_MuDR 180915 181172 64 - . . scaffold1247 GLEAN mRNA 173109 184348 0.886383 - . ID=CGI_10008950; scaffold1310 WUBlastX DNA_MuDR 189 446 64 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_L1 66541 67077 56 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LINE_RTE-X 51243 51350 39 + . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 131995 132213 49 - . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LINE_RTE-X 7517 7879 43 + . . . . . -1 -1 -1 . . . scaffold1803 WUBlastX LINE_RTE-X 231361 231531 83 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 216424 216585 36 + . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold189 WUBlastX LINE_RTE-BovB 311983 312606 23 - . . . . . -1 -1 -1 . . . C21190 WUBlastX LINE_RTE-BovB 15 113 87 - . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX DNA_TcMar-Tc2 67637 67801 83 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_Sola 44100 44201 29 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LTR_Gypsy 116062 116568 30 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_DIRS 341121 341282 57 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_L1-Tx1 167566 167694 20 + . . . . . -1 -1 -1 . . . C28540 WUBlastX DNA_TcMar-Marin 1568 1624 21 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 637625 637822 31 - . . scaffold678 GLEAN mRNA 636648 664664 0.986036 - . ID=CGI_10026369; C3957 WUBlastX LTR_Copia 2 115 77 - . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LTR_DIRS 43269 43505 50 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold150 WUBlastX DNA_Crypton 813677 813895 68 + . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX DNA_IS4EU 71003 71134 37 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX DNA_IS4EU 70517 70669 63 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok-Hyd 1352824 1353174 53 - . . scaffold86 GLEAN mRNA 1350663 1354624 0.5119 - . ID=CGI_10028203; scaffold1521 WUBlastX LINE_Penelope 321849 322088 37 - . . . . . -1 -1 -1 . . . scaffold41380 WUBlastX LINE_RTE-BovB 66992 67252 29 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold44054 WUBlastX DNA_PiggyBac 48945 49028 58 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 397432 397611 71 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_RTE-X 185014 185283 62 + . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX DNA_Sola 29058 29396 71 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX DNA_TcMar-Marin 38277 38609 27 + . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LTR_Gypsy 2758 3669 23 - . . . . . -1 -1 -1 . . . C33188 WUBlastX DNA_Harbinger 3707 4159 37 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 14036 14200 75 - . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_L1-Tx1 9 173 59 - . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX LINE_RTE-X 334827 334925 43 - . . scaffold43940 GLEAN mRNA 320005 345257 1 - . ID=CGI_10014162; scaffold664 WUBlastX LINE_RTE-X 503195 503407 95 - . . scaffold664 GLEAN mRNA 503105 503419 0.999344 - . ID=CGI_10021453; scaffold148 WUBlastX DNA_TcMar-Tigge 71687 71989 42 + . . . . . -1 -1 -1 . . . scaffold371 WUBlastX DNA_TcMar-Tc1 11000 11155 79 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_IS4EU 31562 31726 57 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX DNA_IS4EU 6334 6561 65 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_hAT-Tip100 445238 445474 109 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold712 WUBlastX DNA_TcMar-Tc1 444688 444933 83 - . . scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; C31346 WUBlastX DNA_TcMar-Marin 4546 4710 66 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_RTE-BovB 134282 134497 54 - . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_RTE-X 386366 386593 74 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 66446 66586 52 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold1154 WUBlastX LINE_L1-Tx1 842687 842737 20 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Zator 220944 221258 56 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LTR_Copia 154656 154754 32 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_CR1-L2 230140 230607 42 + . . . . . -1 -1 -1 . . . C35042 WUBlastX LINE_CR1-L2 12364 12729 58 - . . C35042 GLEAN mRNA 1730 15534 0.391528 + . ID=CGI_10001403; scaffold43396 WUBlastX LINE_CR1-L2 224906 225250 77 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_CR1-L2 141819 142199 20 - . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LINE_L2 59032 59349 57 - . . scaffold1686 GLEAN mRNA 58573 59710 0.792752 - . ID=CGI_10005075; scaffold471 WUBlastX LTR_DIRS 502026 502196 92 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Gypsy 55105 55605 98 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX DNA_Kolobok-IS4 52443 52595 20 - . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold579 WUBlastX DNA_TcMar-Tc1 206870 206935 33 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold39536 WUBlastX LINE_Penelope 20818 21234 52 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_Kolobok 340319 340393 20 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LINE_Penelope 102582 102638 26 - . . scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold37432 WUBlastX LINE_L1-Tx1 4281 4412 28 - . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX DNA_TcMar-Tc1 2058 2363 44 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_CR1-L2 54495 54650 33 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_CR1-L2 54891 55160 33 - . . . . . -1 -1 -1 . . . scaffold866 WUBlastX LTR_DIRS? 15619 15975 117 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_DIRS? 580712 581149 47 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LTR_Gypsy 157717 157938 56 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LTR_Gypsy 157956 158216 24 + . . . . . -1 -1 -1 . . . scaffold1200 WUBlastX LINE_RTE-X 41388 41783 72 - . . . . . -1 -1 -1 . . . scaffold1028 WUBlastX LINE_RTE-X 42302 42781 29 + . . scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold987 WUBlastX LINE_L1-Tx1 75572 75874 56 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_L1-Tx1 272037 272657 41 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_L2 211447 211788 41 + . . . . . -1 -1 -1 . . . C31724 WUBlastX LTR_Gypsy-Cigr 1751 1894 99 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_CR1 114783 115163 90 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_CR1 714861 714908 20 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold38498 WUBlastX DNA_Crypton 2027 2302 47 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LTR_Gypsy 543571 543624 24 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 292019 292393 56 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_RTE-X 377262 377336 26 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_RTE-BovB 194530 194634 59 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX LINE_RTE-BovB 194720 194965 58 - . . . . . -1 -1 -1 . . . scaffold232 WUBlastX DNA_Maverick 101694 102350 104 - . . . . . -1 -1 -1 . . . scaffold855 WUBlastX DNA_Maverick 2554 3108 103 + . . scaffold855 GLEAN mRNA 754 11189 0.999983 + . ID=CGI_10001160; scaffold1785 WUBlastX LINE_L2 544441 544878 99 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold664 WUBlastX LTR_Ngaro 302359 302604 139 - . . scaffold664 GLEAN mRNA 302033 315790 0.67043 + . ID=CGI_10021446; scaffold1518 WUBlastX LTR_DIRS 467930 468136 50 - . . scaffold1518 GLEAN mRNA 454061 469419 0.622487 + . ID=CGI_10017815; scaffold343 WUBlastX DNA_hAT-Blackja 662016 662336 107 + . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold1061 WUBlastX LINE_R2-Hero 310278 310430 62 + . . . . . -1 -1 -1 . . . scaffold39074 WUBlastX LINE_R2-Hero 47691 47951 73 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 105910 106152 27 - . . . . . -1 -1 -1 . . . C29260 WUBlastX LINE_L1-Tx1 3789 4268 61 + . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LTR_Pao 22897 23361 140 - . . scaffold35994 GLEAN mRNA 21382 24601 0.722015 + . ID=CGI_10001675; scaffold270 WUBlastX LINE_L2 115331 115801 90 - . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LINE_CR1 1929 2096 26 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Ngaro 89322 89498 87 + . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1 32556 32726 52 - . . . . . -1 -1 -1 . . . scaffold41628 WUBlastX LINE_L1 97109 97216 68 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LINE_RTE-X 186561 186644 44 + . . . . . -1 -1 -1 . . . scaffold40606 WUBlastX LINE_RTE-X 9082 9324 114 - . . scaffold40606 GLEAN mRNA 7541 35661 0.834284 + . ID=CGI_10004278; scaffold935 WUBlastX DNA_Sola 52974 53423 33 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_hAT-Tip100 326626 326961 33 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L2 384966 385070 22 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 370280 370855 114 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Gypsy-Cigr 330831 331319 157 - . . . . . -1 -1 -1 . . . C32888 WUBlastX DNA_IS4EU 10635 10838 84 - . . . . . -1 -1 -1 . . . C32888 WUBlastX DNA_IS4EU 10862 11059 67 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_IS4EU 575165 575329 118 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold1785 WUBlastX LINE_RTE-X 503407 503922 43 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_RTE-X 412 663 62 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_PiggyBac 726237 726464 35 + . . scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold41664 WUBlastX LTR_Pao 105239 105973 272 - . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LINE_CR1-L2 99589 100722 162 - . . scaffold454 GLEAN mRNA 93341 108889 0.996665 - . ID=CGI_10011629; scaffold1817 WUBlastX DNA_MuDR 118752 119126 32 - . . . . . -1 -1 -1 . . . scaffold1173 WUBlastX LINE_Penelope 100172 100672 129 + . . scaffold1173 GLEAN mRNA 87229 104633 0.605033 - . ID=CGI_10005747; scaffold332 WUBlastX LINE_RTE-X 398211 398294 23 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LINE_RTE-X 99838 100227 73 + . . . . . -1 -1 -1 . . . scaffold42662 WUBlastX LINE_RTE-X 162231 162599 97 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_RTE-X 57918 58433 96 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_Sola 219224 219415 51 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_Sola 219394 219648 107 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Gypsy 24666 24767 20 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold41594 WUBlastX LTR_Pao 59540 60124 523 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_DIRS 48801 49511 134 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold354 WUBlastX LTR_DIRS 49636 51252 773 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold226 WUBlastX LTR_Ngaro 253255 254871 1026 - . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX DNA_TcMar-Tc1 12915 13055 89 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-BovB 445040 445372 168 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_RTE-X 676693 677367 135 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_RTE-X 677880 678467 68 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_RTE-X 678488 678574 56 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_RTE-X 678580 679062 291 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_hAT-hATw 151057 152136 388 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_CR1-L2 123390 124019 76 + . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 83053 83385 178 + . . . . . -1 -1 -1 . . . scaffold41772 WUBlastX LTR_Gypsy 99190 99423 54 + . . . . . -1 -1 -1 . . . scaffold1550 WUBlastX LINE_L1-Tx1 4143 4787 144 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_Sola 326092 326172 21 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_L2 318036 318092 24 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_L2 318103 318474 94 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L2 196426 197490 84 - . . . . . -1 -1 -1 . . . scaffold35928 WUBlastX LTR_Ngaro 19846 20046 145 - . . . . . -1 -1 -1 . . . scaffold35928 WUBlastX LTR_Ngaro 20045 20242 24 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_TcMar-Tc1 533150 533344 91 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_RTE-X 462907 463590 40 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_RTE-X 187356 187640 161 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 238957 239814 764 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy 597521 598033 206 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold588 WUBlastX LINE_L1 151151 151471 75 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold37944 WUBlastX DNA_Sola 1673 2338 58 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX RC_Helitron 14528 15409 153 + . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold749 WUBlastX LINE_CR1-L2 50927 51355 159 + . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX LINE_CR1-L2 61063 61554 170 - . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LTR_Gypsy 20436 21005 192 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_L2 763016 763639 136 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 155995 156441 114 - . . . . . -1 -1 -1 . . . C28510 WUBlastX DNA_Sola 2928 3254 49 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX DNA_TcMar-Fot1 211548 211595 28 + . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LINE_Penelope 463903 464490 153 - . . . . . -1 -1 -1 . . . scaffold33184 WUBlastX LINE_Penelope 5 610 124 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_RTE-X 403718 404269 189 + . . . . . -1 -1 -1 . . . scaffold1247 WUBlastX DNA_TcMar-Tc1 113832 114248 142 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold1301 WUBlastX LTR_Pao 628382 628711 22 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold257 WUBlastX LTR_Gypsy 1094933 1095085 50 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy 1095115 1097229 1527 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold35138 WUBlastX LTR_Gypsy 15865 16557 135 - . . . . . -1 -1 -1 . . . scaffold39028 WUBlastX LTR_Gypsy 2319 2879 83 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Harbinger 73822 74010 92 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX DNA_Harbinger 74145 74207 32 + . . . . . -1 -1 -1 . . . C29974 WUBlastX LINE_RTE-X 1916 2233 124 + . . . . . -1 -1 -1 . . . C29974 WUBlastX LINE_RTE-X 2247 2390 85 + . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LTR_Pao 78512 79093 397 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold43538 WUBlastX LINE_CR1 155919 155963 27 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold288 WUBlastX LINE_RTE-X 653256 653687 51 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 98848 99549 243 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold424 WUBlastX LTR_Gypsy 65915 66175 34 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX DNA_MuDR 195302 195562 39 + . . . . . -1 -1 -1 . . . scaffold88 WUBlastX DNA_MuDR 195846 196187 132 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Gypsy 104804 106291 953 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LINE_L2 94266 94325 21 - . . . . . -1 -1 -1 . . . scaffold1343 WUBlastX LTR_Gypsy 35520 36419 214 + . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LINE_RTE-BovB 267281 267442 95 + . . scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold664 WUBlastX DNA_PiggyBac 355693 356241 217 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 192373 193071 96 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 4258 4464 186 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 4443 4985 278 + . . . . . -1 -1 -1 . . . scaffold926 WUBlastX LTR_Gypsy 6333 7316 860 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Pao 1074866 1075303 113 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold126 WUBlastX LTR_Gypsy 144668 144775 22 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-X 590598 590990 202 + . . scaffold237 GLEAN mRNA 590107 590598 0.776648 + . ID=CGI_10021587; scaffold1214 WUBlastX LINE_RTE-X 243275 243658 116 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold395 WUBlastX LINE_RTE-X 229542 230291 212 - . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX DNA_Sola 18052 18282 73 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX DNA_Sola 18303 18356 24 + . . . . . -1 -1 -1 . . . scaffold1030 WUBlastX LTR_Pao 23631 23726 30 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX DNA_TcMar-Marin 378786 379007 164 - . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX LINE_RTE-X 39345 40682 68 + . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Gypsy 376347 378323 1101 - . . . . . -1 -1 -1 . . . scaffold40264 WUBlastX LINE_L2 49718 51625 176 - . . scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold1794 WUBlastX LINE_L2 576538 576576 20 + . . . . . -1 -1 -1 . . . scaffold1089 WUBlastX LINE_Penelope 63311 63928 263 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX DNA_MuDR 220140 220787 201 + . . . . . -1 -1 -1 . . . scaffold38990 WUBlastX LINE_RTE-X 60528 61949 176 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L1-Tx1 43667 44671 94 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok 955446 955946 115 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok 956996 957103 42 + . . . . . -1 -1 -1 . . . scaffold1401 WUBlastX LINE_RTE-X 2960 3214 55 - . . scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold321 WUBlastX LINE_RTE-X 629368 630795 261 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_Penelope 571294 572355 251 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 89341 89583 40 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LTR_Gypsy 186082 186420 195 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_Harbinger 284044 285066 247 + . . scaffold867 GLEAN mRNA 272568 288334 0.996494 + . ID=CGI_10026216; C35006 WUBlastX DNA_IS4EU 212 1114 277 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_TcMar-Tc1 585041 585550 209 - . . . . . -1 -1 -1 . . . scaffold1846 WUBlastX LINE_L1-Tx1 67451 68626 170 - . . . . . -1 -1 -1 . . . scaffold38904 WUBlastX LTR_Ngaro 22264 22503 32 + . . scaffold38904 GLEAN mRNA 21184 27002 0.495502 - . ID=CGI_10003048; scaffold38904 WUBlastX LTR_Ngaro 22506 23189 216 + . . scaffold38904 GLEAN mRNA 21184 27002 0.495502 - . ID=CGI_10003048; scaffold914 WUBlastX LTR_Ngaro 363973 364296 49 - . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_TcMar-Tc1 230479 230910 203 + . . . . . -1 -1 -1 . . . scaffold36140 WUBlastX LINE_CR1 8921 9490 211 - . . scaffold36140 GLEAN mRNA 6624 23811 0.998174 + . ID=CGI_10001795; C25486 WUBlastX LTR_Gypsy 2701 2775 20 - . . . . . -1 -1 -1 . . . scaffold1514 WUBlastX LTR_Gypsy 123591 123935 230 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 313460 313585 20 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_L1-Tx1 382486 382974 127 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_L1-Tx1 383381 383479 38 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_L1-Tx1 383482 383940 135 + . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX LINE_Proto2 36287 38263 253 + . . . . . -1 -1 -1 . . . scaffold815 WUBlastX LINE_RTE-X 10635 11315 23 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold502 WUBlastX LINE_L1 77240 78034 29 + . . scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold1199 WUBlastX DNA_Maverick 31217 31855 40 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 30118 30276 156 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 30357 30554 115 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 30593 30649 28 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX DNA_Maverick 30664 30900 76 - . . . . . -1 -1 -1 . . . scaffold42226 WUBlastX DNA_Kolobok 120356 120592 100 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 120758 120952 72 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 121087 121302 41 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 122100 122381 96 - . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold1484 WUBlastX LINE_CR1-L2 288745 288948 137 + . . . . . -1 -1 -1 . . . scaffold207 WUBlastX LTR_Gypsy 25649 26059 40 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Gypsy 646654 647274 175 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 191418 192074 429 + . . scaffold43726 GLEAN mRNA 189584 195489 0.999572 - . ID=CGI_10012025; scaffold754 WUBlastX LINE_RTE-X 22318 23805 221 - . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX LINE_CR1 40031 40243 119 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1883 WUBlastX LINE_L1-Tx1 90288 91064 226 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_L1-Tx1 91079 91450 153 - . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_RTE-X 108940 110628 304 + . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold458 WUBlastX LTR_Ngaro 174196 175155 431 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 177951 178910 431 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold501 WUBlastX LINE_RTE-X 866251 867348 350 + . . scaffold501 GLEAN mRNA 862188 876023 0.966154 + . ID=CGI_10027533; scaffold719 WUBlastX DNA_TcMar-Tc1 222426 223364 296 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX DNA_IS4EU 229360 229560 20 + . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX DNA_TcMar-Marin 385058 385207 39 - . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX DNA_TcMar-Marin 385424 386044 325 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_RTE-X 401986 402366 154 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold626 WUBlastX DNA_Sola 296221 296694 203 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LTR_DIRS 140068 140769 233 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold867 WUBlastX LINE_L2-Hydra 487691 490444 322 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_hAT 494985 495083 32 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold85 WUBlastX LTR_Gypsy 354345 354545 31 - . . scaffold85 GLEAN mRNA 332841 357883 0.849566 - . ID=CGI_10020703; scaffold1301 WUBlastX LTR_Pao 625952 626311 36 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold461 WUBlastX LTR_Gypsy 122733 123572 221 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_L1 688941 689228 55 - . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold177 WUBlastX DNA_TcMar-Tc1 2789 2929 56 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_RTE-X 187420 188532 418 + . . . . . -1 -1 -1 . . . C28626 WUBlastX LINE_RTE-X 1187 2542 432 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_RTE-X 137698 138483 348 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Gypsy 89911 91059 345 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 313537 313764 63 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 410799 411950 465 - . . scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold42364 WUBlastX DNA_TcMar-Tc1 22971 23945 432 - . . scaffold42364 GLEAN mRNA 5952 23975 0.523615 - . ID=CGI_10006717; scaffold36108 WUBlastX LTR_Pao 30542 31264 679 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_CR1-L2 42459 43616 326 - . . scaffold1179 GLEAN mRNA 39144 50414 0.726285 + . ID=CGI_10027340; scaffold655 WUBlastX LTR_Gypsy 409987 410994 637 - . . scaffold655 GLEAN mRNA 410008 410964 0.999999 - . ID=CGI_10014963; scaffold1014 WUBlastX LINE_L1 592492 592731 91 - . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold141 WUBlastX LTR_Gypsy 149094 149336 22 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy-Cigr 499875 500894 475 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy-Cigr 501429 501596 119 - . . . . . -1 -1 -1 . . . scaffold1799 WUBlastX LTR_Ngaro 59073 59267 97 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 59575 60009 289 - . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold1794 WUBlastX LINE_L1-Tx1 547557 547922 54 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_L1-Tx1 547931 548986 681 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_DIRS 59013 59642 139 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 1227495 1227722 139 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold446 WUBlastX LINE_L1 47108 48550 208 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_L1 14728 14793 23 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_PiggyBac 303574 303699 26 - . . scaffold370 GLEAN mRNA 303684 313494 0.791709 + . ID=CGI_10025534; scaffold1525 WUBlastX LTR_Pao 314012 314257 77 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Pao 94218 94343 87 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_Harbinger 154487 154606 30 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy 59793 60506 25 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Copia 231077 231352 21 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Copia 274798 274914 28 + . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_L2 19956 20060 20 - . . . . . -1 -1 -1 . . . scaffold37622 WUBlastX LINE_L2 26424 26546 59 + . . scaffold37622 GLEAN mRNA 16284 44703 0.980135 - . ID=CGI_10002429; scaffold204 WUBlastX LINE_CR1 808212 808601 41 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LINE_CR1 101600 101764 54 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_CR1 286859 286990 23 + . . . . . -1 -1 -1 . . . scaffold587 WUBlastX LINE_L2 110704 110871 77 - . . scaffold587 GLEAN mRNA 106168 127861 0.701684 + . ID=CGI_10006892; scaffold786 WUBlastX LTR_Ngaro 201360 201761 66 - . . . . . -1 -1 -1 . . . scaffold43520 WUBlastX LTR_Ngaro 185629 186030 66 + . . scaffold43520 GLEAN mRNA 184106 230161 0.796254 - . ID=CGI_10010721; scaffold40010 WUBlastX DNA_En-Spm 36666 36827 72 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 592391 592444 22 + . . scaffold1307 GLEAN mRNA 586550 596673 0.992394 + . ID=CGI_10023769; scaffold1860 WUBlastX LTR_Gypsy 349945 350145 30 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX DNA_IS4EU 433861 434250 73 + . . scaffold1016 GLEAN mRNA 434053 435120 0.686938 + . ID=CGI_10016898; C35716 WUBlastX DNA_IS4EU 15808 15942 32 - . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX LINE_L2 14871 15047 21 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L2 479820 480479 33 - . . scaffold599 GLEAN mRNA 478283 491770 0.99915 - . ID=CGI_10021727; scaffold563 WUBlastX LINE_L2 269286 269720 38 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LTR_Ngaro 475091 475372 48 - . . scaffold853 GLEAN mRNA 464268 475102 0.615194 - . ID=CGI_10017519; scaffold343 WUBlastX DNA_TcMar-Marin 369261 369443 23 - . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX DNA_TcMar-Marin 195377 195592 51 + . . scaffold42948 GLEAN mRNA 186071 196987 0.150089 + . ID=CGI_10008236; scaffold145 WUBlastX LINE_Penelope 90620 90733 47 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L1 190131 190562 30 - . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_RTE-X 470041 470112 41 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_RTE-X 278661 279002 34 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_RTE-BovB 44057 44203 89 - . . . . . -1 -1 -1 . . . scaffold43130 WUBlastX LINE_RTE-X 211217 211366 65 - . . . . . -1 -1 -1 . . . scaffold65 WUBlastX LINE_RTE-X 33828 33974 60 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_RTE-X 147363 147521 22 - . . scaffold143 GLEAN mRNA 117664 149411 0.999949 + . ID=CGI_10010012; scaffold1583 WUBlastX LINE_RTE-BovB 507611 507688 20 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 966144 966272 24 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LINE_RTE-BovB 130784 130933 54 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1079083 1079412 64 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold867 WUBlastX LTR_Copia 237760 237888 22 - . . . . . -1 -1 -1 . . . scaffold194 WUBlastX LINE_RTE-X 195563 195724 51 + . . . . . -1 -1 -1 . . . scaffold39380 WUBlastX DNA_Sola 59549 59719 42 + . . . . . -1 -1 -1 . . . scaffold129 WUBlastX DNA_Sola 59833 60141 53 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy 189347 189451 20 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LINE_L2 112562 112885 61 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX LINE_CR1-L2 118305 118490 74 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX LTR_Gypsy 206742 206972 89 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 632980 633129 49 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 633129 633209 28 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_L2 1229515 1229688 98 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold321 WUBlastX LINE_CR1 394175 394282 36 + . . . . . -1 -1 -1 . . . C28654 WUBlastX LTR_Gypsy 557 1042 59 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX DNA_hAT-hATw 559240 559449 36 + . . scaffold394 GLEAN mRNA 549658 560561 0.811205 + . ID=CGI_10022093; scaffold53 WUBlastX DNA_hAT-Tip100 932940 933224 27 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_L1 477968 478321 59 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L1 267398 268228 24 + . . scaffold501 GLEAN mRNA 267968 268585 0.999995 + . ID=CGI_10027511; scaffold1656 WUBlastX LINE_Penelope 102204 102551 34 - . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-X 250625 250846 36 + . . . . . -1 -1 -1 . . . scaffold1386 WUBlastX LINE_RTE-X 91230 91565 63 + . . . . . -1 -1 -1 . . . scaffold1366 WUBlastX LINE_RTE-X 137558 137770 68 - . . scaffold1366 GLEAN mRNA 134919 140492 0.999572 - . ID=CGI_10012293; scaffold1322 WUBlastX LINE_RTE-X 263639 263770 65 + . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX LINE_L2 56499 56558 21 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_PiggyBac 1334386 1334601 65 - . . scaffold1179 GLEAN mRNA 1333065 1336155 0.976862 - . ID=CGI_10027422; scaffold1556 WUBlastX LINE_RTE-BovB 92818 93045 85 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LINE_RTE-X 19739 19942 49 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold388 WUBlastX LINE_RTE-X 532101 532277 73 + . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LINE_Jockey 16413 16571 33 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LTR_Gypsy-Cigr 81891 81998 46 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Copia 280515 280574 28 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold409 WUBlastX LINE_CR1 47158 47469 53 - . . . . . -1 -1 -1 . . . scaffold34882 WUBlastX LINE_CR1 1102 1506 55 + . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LTR_Ngaro 13064 13186 64 + . . . . . -1 -1 -1 . . . scaffold868 WUBlastX LTR_Gypsy-Cigr 148503 148682 98 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LTR_Gypsy-Cigr 196825 196959 97 + . . scaffold1730 GLEAN mRNA 195851 199333 0.999676 + . ID=CGI_10012260; scaffold644 WUBlastX LINE_L1-Tx1 84590 84682 33 - . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LINE_L1 161916 162362 66 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold1848 WUBlastX LINE_RTE-X 117610 117789 89 - . . . . . -1 -1 -1 . . . scaffold76 WUBlastX LINE_RTE-X 227550 227885 65 + . . scaffold76 GLEAN mRNA 221391 229684 0.999675 - . ID=CGI_10009406; scaffold1191 WUBlastX LINE_RTE-X 93695 93928 83 + . . scaffold1191 GLEAN mRNA 88841 97999 0.89115 + . ID=CGI_10005212; scaffold38774 WUBlastX DNA_Sola 7523 7726 40 + . . . . . -1 -1 -1 . . . scaffold38774 WUBlastX DNA_Sola 8563 8772 42 + . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX DNA_TcMar-Tc2 27224 27670 97 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX LINE_L1-Tx1 325865 326116 79 - . . . . . -1 -1 -1 . . . scaffold39142 WUBlastX LINE_L1-Tx1 821 1117 88 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LINE_L2 107271 107519 78 + . . scaffold1578 GLEAN mRNA 107358 107540 0.618108 + . ID=CGI_10008163; scaffold698 WUBlastX LINE_L2 538629 539060 75 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LTR_Gypsy 20658 21068 27 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX LTR_Gypsy 21545 22249 28 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 248998 249342 110 - . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LTR_DIRS 212096 212347 33 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_IS4EU 300092 300289 25 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LINE_L1 105109 105900 50 - . . . . . -1 -1 -1 . . . scaffold253 WUBlastX DNA_TcMar-Marin 29362 29607 57 + . . . . . -1 -1 -1 . . . scaffold253 WUBlastX DNA_TcMar-Marin 29702 29860 23 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 111639 111677 22 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 111710 111970 74 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_RTE-X 108946 109362 64 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 1442705 1442884 103 - . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_Ngaro 56562 56717 89 - . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold754 WUBlastX LINE_L2 232491 233183 30 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L2 77083 77580 86 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 1317713 1318270 89 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_Penelope 10637 10909 104 + . . . . . -1 -1 -1 . . . C26566 WUBlastX DNA_P 3035 3298 93 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_P 340768 341031 93 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L1 588254 588916 58 + . . . . . -1 -1 -1 . . . scaffold560 WUBlastX LINE_RTE-X 139806 140036 89 - . . scaffold560 GLEAN mRNA 134675 160538 0.941337 + . ID=CGI_10008753; scaffold184 WUBlastX LINE_RTE-X 131111 131311 50 + . . . . . -1 -1 -1 . . . C31246 WUBlastX LINE_L1-Tx1 5197 5265 23 + . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_TcMar-Tc1 155791 156027 27 - . . scaffold751 GLEAN mRNA 154176 165740 0.999947 - . ID=CGI_10017388; scaffold751 WUBlastX DNA_TcMar-Tc1 156119 156199 23 - . . scaffold751 GLEAN mRNA 154176 165740 0.999947 - . ID=CGI_10017388; scaffold1687 WUBlastX LINE_CR1-L2 97835 98155 49 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 14036 14167 113 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_L2 210243 210341 20 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy 155258 155980 21 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LTR_Gypsy 113594 114271 45 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_IS4EU 93874 94047 67 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_IS4EU 94091 94606 38 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_L1 151788 152114 97 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold1813 WUBlastX DNA_TcMar-Marin 43268 43423 54 - . . . . . -1 -1 -1 . . . scaffold43130 WUBlastX LINE_RTE-X 122237 122569 81 + . . scaffold43130 GLEAN mRNA 99127 140133 0.992485 - . ID=CGI_10008963; scaffold801 WUBlastX LINE_RTE-X 638252 638422 99 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; C29438 WUBlastX LINE_RTE-X 2525 2695 109 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold397 WUBlastX LINE_L1-Tx1 12320 12856 62 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 9496 9585 23 + . . . . . -1 -1 -1 . . . scaffold37844 WUBlastX LINE_Penelope 5379 5669 68 - . . scaffold37844 GLEAN mRNA 2684 16247 0.999999 - . ID=CGI_10002508; scaffold43200 WUBlastX LINE_L1 85929 86330 39 - . . . . . -1 -1 -1 . . . scaffold41806 WUBlastX LINE_RTE-X 65209 65532 90 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 569580 569825 30 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 570187 570234 37 - . . . . . -1 -1 -1 . . . scaffold311 WUBlastX LINE_RTE-X 6351 6863 64 - . . . . . -1 -1 -1 . . . scaffold35568 WUBlastX DNA_PiggyBac 15453 15752 69 - . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX DNA_TcMar-Tc1 2524 2745 94 + . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_CR1-L2 82415 83056 67 + . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LTR_Gypsy-Cigr 70326 70898 106 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LTR_Gypsy 33745 34035 153 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX DNA_IS4EU 1145697 1145888 116 - . . . . . -1 -1 -1 . . . scaffold38672 WUBlastX DNA_Kolobok 39217 39384 79 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX DNA_TcMar-Tc1 497958 498155 25 - . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LTR_Gypsy 275991 276872 134 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy-Cigr 608589 609002 117 + . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_L1-Tx1 267200 267583 125 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Ngaro 379823 380260 90 + . . . . . -1 -1 -1 . . . scaffold36070 WUBlastX LINE_RTE-BovB 11360 11731 86 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1 101369 101542 36 - . . . . . -1 -1 -1 . . . scaffold1761 WUBlastX LTR_Gypsy 7538 7714 55 - . . . . . -1 -1 -1 . . . scaffold41740 WUBlastX LINE_L1-Tx1 114767 115024 122 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_L2-Hydra 199039 199497 67 + . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LTR_Gypsy 40984 41142 113 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold524 WUBlastX DNA_IS4EU 194307 195407 44 + . . . . . -1 -1 -1 . . . scaffold40440 WUBlastX LINE_Penelope 54428 54544 32 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold38152 WUBlastX LTR_Gypsy 48472 49767 683 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 253369 253749 292 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LTR_Gypsy 105470 105886 44 + . . scaffold1459 GLEAN mRNA 92847 117435 0.999674 - . ID=CGI_10010107; scaffold32754 WUBlastX LINE_L2 8207 8920 106 - . . . . . -1 -1 -1 . . . scaffold40216 WUBlastX DNA_Academ 33057 33155 20 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 549663 550373 126 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_Jockey 455585 456115 134 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX DNA_Merlin 586842 587243 126 + . . . . . -1 -1 -1 . . . scaffold36482 WUBlastX LINE_Penelope 32344 32706 30 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_Ngaro 196599 196892 69 + . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold36420 WUBlastX LINE_RTE-X 9673 10029 99 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LINE_L1-Tx1 40778 40993 54 - . . scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold896 WUBlastX LINE_L1-Tx1 47812 48321 71 + . . scaffold896 GLEAN mRNA 45378 49645 0.962391 - . ID=CGI_10022830; scaffold40438 WUBlastX LINE_L1-Tx1 2261 2653 89 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LINE_CR1 357195 357422 59 - . . . . . -1 -1 -1 . . . scaffold36118 WUBlastX LINE_RTE-X 6131 7312 274 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_Penelope 93200 94273 666 + . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_Gypsy 33114 33506 84 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_RTE-X 4066 4878 78 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L2 286742 288223 712 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold1788 WUBlastX DNA_Maverick 31077 32060 289 + . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX DNA_En-Spm 51952 53340 954 + . . . . . -1 -1 -1 . . . scaffold43036 WUBlastX LTR_Pao 27048 27182 104 - . . scaffold43036 GLEAN mRNA 24277 27152 1 - . ID=CGI_10008493; scaffold43036 WUBlastX LTR_Pao 26859 26960 115 - . . scaffold43036 GLEAN mRNA 24277 27152 1 - . ID=CGI_10008493; scaffold286 WUBlastX LTR_Gypsy 291257 291349 29 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 43776 44141 83 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_DIRS 420944 421336 84 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX DNA_Kolobok 232783 233010 43 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold1024 WUBlastX LINE_CR1 71118 72401 1021 + . . scaffold1024 GLEAN mRNA 70811 87216 0.389681 + . ID=CGI_10028519; scaffold1350 WUBlastX LTR_DIRS 469018 469560 356 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold1788 WUBlastX DNA_Maverick 29919 30572 122 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 31491 32192 384 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 32355 33506 586 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 300269 301072 46 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LTR_Gypsy-Cigr 521594 522205 178 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX DNA_hAT-hATw 127085 127684 137 + . . . . . -1 -1 -1 . . . scaffold35138 WUBlastX LTR_Gypsy 14184 14330 23 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_Penelope 1922 2356 159 + . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX DNA_PiggyBac 492044 492451 173 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_TcMar-Tc1 533343 534089 147 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Gypsy 447158 447457 22 - . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LINE_L2 46545 47180 153 + . . scaffold42530 GLEAN mRNA 44450 55395 0.966018 + . ID=CGI_10007161; scaffold1647 WUBlastX LTR_Gypsy 102447 102617 34 - . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LTR_DIRS 59771 60565 146 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 89583 90302 292 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LTR_Gypsy 399981 401558 253 - . . scaffold588 GLEAN mRNA 392510 405723 0.983024 + . ID=CGI_10016225; scaffold481 WUBlastX LTR_Gypsy 1217774 1218256 103 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1218255 1219388 840 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold43562 WUBlastX LINE_RTE-X 132426 134471 1323 - . . scaffold43562 GLEAN mRNA 120653 134746 0.91935 - . ID=CGI_10011033; scaffold591 WUBlastX LTR_DIRS 76494 77060 201 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_Harbinger 70735 70869 68 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX RC_Helitron 633182 633748 133 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX RC_Helitron 633895 634203 54 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_L1-Tx1 70720 70944 27 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_RTE-BovB 390272 390745 110 - . . . . . -1 -1 -1 . . . scaffold35466 WUBlastX DNA_TcMar-Tc1 17777 17986 42 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX DNA_TcMar-Tc1 53125 53619 152 + . . . . . -1 -1 -1 . . . C25392 WUBlastX DNA_Sola 92 793 186 - . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_RTE-X 112894 113037 49 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_RTE-X 113043 113336 47 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_PiggyBac 241040 241366 75 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_PiggyBac 241656 241847 113 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX RC_Helitron 534878 535075 22 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_DIRS 85950 86327 175 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Tc1 223097 223447 127 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LTR_Gypsy 123831 125165 737 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_L1-Tx1 83054 86794 1520 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy-Cigr 370460 370915 213 - . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX LTR_Ngaro 16957 17553 180 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 927462 927842 123 - . . . . . -1 -1 -1 . . . C30084 WUBlastX LINE_Penelope 5452 5793 82 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_Penelope 270066 270527 183 + . . . . . -1 -1 -1 . . . C26534 WUBlastX DNA_PiggyBac 3441 3992 215 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Ngaro 699230 699658 130 + . . . . . -1 -1 -1 . . . scaffold674 WUBlastX LTR_Ngaro 15145 15366 120 + . . scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; C22996 WUBlastX LTR_Gypsy 11 397 222 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 747569 747802 126 - . . . . . -1 -1 -1 . . . scaffold38976 WUBlastX LTR_Gypsy 7875 9392 1423 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX LTR_Gypsy 9349 9915 257 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX LTR_Gypsy 9927 10343 348 - . . scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold1134 WUBlastX LTR_Ngaro 91651 91905 56 - . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX LTR_Ngaro 91940 92032 21 - . . . . . -1 -1 -1 . . . scaffold1134 WUBlastX LTR_Ngaro 92039 92200 40 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_TcMar-Tc1 175088 175396 144 + . . scaffold1036 GLEAN mRNA 165168 179169 0.593142 - . ID=CGI_10019951; scaffold40564 WUBlastX LINE_L1 8889 9605 184 + . . scaffold40564 GLEAN mRNA 6674 28756 0.488599 + . ID=CGI_10004207; scaffold40808 WUBlastX LTR_DIRS 41479 41898 211 + . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_L1-Tx1 259725 260354 157 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 481650 482924 188 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX RC_Helitron 227469 228251 173 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 973294 974598 116 - . . scaffold3 GLEAN mRNA 958982 982969 0.663393 + . ID=CGI_10027317; C24640 WUBlastX LINE_Penelope 268 726 34 - . . . . . -1 -1 -1 . . . C24640 WUBlastX LINE_Penelope 704 1147 88 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_L1 868991 869038 23 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-X 23727 24113 48 - . . . . . -1 -1 -1 . . . scaffold1784 WUBlastX LTR_DIRS 57968 58627 101 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_L1-Tx1 175543 179148 1800 + . . . . . -1 -1 -1 . . . scaffold207 WUBlastX LTR_Gypsy-Cigr 26779 27519 271 + . . . . . -1 -1 -1 . . . scaffold1103 WUBlastX LTR_Ngaro 110043 110543 264 + . . . . . -1 -1 -1 . . . scaffold33840 WUBlastX LINE_L1 7256 7645 251 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1 732683 732748 21 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Maverick 499112 499156 36 - . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L1-Tx1 303121 303903 188 - . . . . . -1 -1 -1 . . . C26692 WUBlastX DNA_Harbinger 624 935 119 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Gypsy 63610 63891 129 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 336571 336942 112 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L2 598167 598517 65 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Pao 346342 346899 344 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_hAT-Tip100? 397964 398032 45 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100? 399174 399788 224 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold1817 WUBlastX LINE_L1-Tx1 106253 106546 106 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_L1-Tx1 106542 107081 160 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 972956 973357 23 - . . scaffold3 GLEAN mRNA 958982 982969 0.663393 + . ID=CGI_10027317; scaffold1307 WUBlastX DNA_TcMar-Tc1 585651 585824 24 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1 569807 570268 108 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L1-Tx1 72890 74050 138 + . . scaffold140 GLEAN mRNA 45423 78027 0.362757 - . ID=CGI_10020123; scaffold43552 WUBlastX DNA_En-Spm 200799 201851 251 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1 523574 523981 315 - . . . . . -1 -1 -1 . . . scaffold326 WUBlastX LTR_Gypsy 66541 66639 25 + . . scaffold326 GLEAN mRNA 66602 67012 0.649408 + . ID=CGI_10003297; scaffold187 WUBlastX LTR_Ngaro 14962 15327 163 + . . . . . -1 -1 -1 . . . scaffold39598 WUBlastX DNA_Kolobok 27434 27613 54 + . . . . . -1 -1 -1 . . . scaffold39598 WUBlastX DNA_Kolobok 27747 28019 78 + . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX LTR_Gypsy 210091 210927 372 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_DIRS 852766 853005 148 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Crypton 576606 577544 333 + . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX LTR_Gypsy 155940 156737 395 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 225236 226033 397 - . . . . . -1 -1 -1 . . . C22996 WUBlastX LTR_Gypsy 727 1494 395 - . . . . . -1 -1 -1 . . . C30144 WUBlastX DNA_Harbinger 646 1368 362 - . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_Maverick 354160 354759 392 - . . . . . -1 -1 -1 . . . scaffold39858 WUBlastX DNA_Kolobok 10708 10965 109 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 11046 11237 96 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 10212 10421 92 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold102 WUBlastX LINE_Penelope 1335109 1335429 88 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LINE_L1-Tx1 4348 4509 22 - . . . . . -1 -1 -1 . . . scaffold550 WUBlastX DNA_Helitron 149470 150264 128 - . . scaffold550 GLEAN mRNA 134556 152020 0.969581 - . ID=CGI_10012490; scaffold36806 WUBlastX LINE_L1-Tx1 13141 13845 98 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_RTE-X 100467 100619 35 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-X 26441 26530 26 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_DIRS 485487 486590 308 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L1-Tx1 403064 403717 134 - . . . . . -1 -1 -1 . . . C29450 WUBlastX LINE_Penelope 5417 5767 199 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LTR_Gypsy 51751 51879 75 + . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX LINE_RTE-X 38235 38591 219 + . . scaffold1283 GLEAN mRNA 32464 43957 1 + . ID=CGI_10011783; scaffold1283 WUBlastX LINE_RTE-X 38596 39495 166 + . . scaffold1283 GLEAN mRNA 32464 43957 1 + . ID=CGI_10011783; scaffold544 WUBlastX LINE_RTE-X 666287 666610 168 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1-Tx1 602224 603243 304 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1-Tx1 601818 601997 82 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LINE_RTE-X 206102 207346 440 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_L1-Tx1 197158 197823 564 - . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-X 203442 203687 28 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LINE_L1-Tx1 20086 20187 32 + . . scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold1475 WUBlastX LINE_L1-Tx1 85824 86291 242 - . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_L1-Tx1 87487 87666 65 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 955317 955535 200 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 39632 40369 196 + . . . . . -1 -1 -1 . . . scaffold39352 WUBlastX LINE_L1-Tx1 32392 33216 593 + . . . . . -1 -1 -1 . . . scaffold1091 WUBlastX LTR_Gypsy 2746 3192 53 - . . scaffold1091 GLEAN mRNA 2872 7633 0.989308 - . ID=CGI_10002833; scaffold1173 WUBlastX LTR_Gypsy 112242 112373 27 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_RTE-X 189289 189609 79 - . . . . . -1 -1 -1 . . . scaffold42896 WUBlastX LINE_L1-Tx1 125043 126122 232 + . . . . . -1 -1 -1 . . . scaffold292 WUBlastX LTR_Pao 18211 19020 697 - . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; C34406 WUBlastX LTR_Pao 12278 12385 72 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_RTE-X 309889 310476 137 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_DIRS 559169 560206 652 + . . . . . -1 -1 -1 . . . scaffold912 WUBlastX LINE_RTE-X 53981 54142 50 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1-Tx1 90914 92977 478 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 50484 50750 21 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LTR_Gypsy 89055 90053 129 + . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; C29398 WUBlastX LTR_Gypsy 4994 6574 746 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_L1-Tx1 192999 193610 76 - . . . . . -1 -1 -1 . . . scaffold43530 WUBlastX LTR_Gypsy 14 1441 803 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_RTE-X 57209 57979 164 + . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LTR_DIRS 40888 41634 227 + . . . . . -1 -1 -1 . . . scaffold41858 WUBlastX LINE_RTE-X 110345 111106 147 + . . scaffold41858 GLEAN mRNA 107447 123979 1 + . ID=CGI_10005770; scaffold1327 WUBlastX LTR_Gypsy 217310 217618 167 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_Gypsy 45286 47445 179 - . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LTR_Gypsy 84534 85826 969 - . . . . . -1 -1 -1 . . . scaffold42556 WUBlastX LINE_CR1 31866 31967 30 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Copia 460953 461222 54 + . . . . . -1 -1 -1 . . . scaffold42804 WUBlastX LTR_Gypsy-Cigr 79734 80054 69 - . . scaffold42804 GLEAN mRNA 77910 84833 0.910125 + . ID=CGI_10007779; scaffold1424 WUBlastX LTR_Gypsy-Cigr 86173 86268 81 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Copia 341047 341160 20 - . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold90 WUBlastX LTR_Pao 202672 202950 51 - . . scaffold90 GLEAN mRNA 201707 202672 0.999991 - . ID=CGI_10015167; scaffold20 WUBlastX LINE_CR1 592692 593174 48 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_CR1-L2 120043 120132 28 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_CR1 8297 8347 21 + . . . . . -1 -1 -1 . . . scaffold42040 WUBlastX LINE_CR1-L2 117640 117804 26 - . . . . . -1 -1 -1 . . . C32714 WUBlastX LTR_Gypsy 11002 11058 48 - . . . . . -1 -1 -1 . . . C32714 WUBlastX LTR_Gypsy 11503 11622 37 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 309933 310298 38 + . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX LTR_DIRS? 3863 4000 36 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_L2 54737 54910 61 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold27654 WUBlastX DNA_Crypton 1047 1442 29 - . . scaffold27654 GLEAN mRNA 1041 1996 0.999376 - . ID=CGI_10000367; scaffold36022 WUBlastX LINE_L2 8979 9419 61 - . . scaffold36022 GLEAN mRNA 8319 9974 0.999661 - . ID=CGI_10001740; scaffold934 WUBlastX LTR_Gypsy 293793 294140 47 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_IS4EU 55939 56187 47 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX DNA_IS4EU 390070 390297 62 + . . . . . -1 -1 -1 . . . scaffold36898 WUBlastX LINE_L1-Tx1 24471 24659 59 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1 796315 796422 53 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_MuDR 479324 479650 44 - . . scaffold1036 GLEAN mRNA 472347 489883 1 - . ID=CGI_10019970; scaffold113 WUBlastX DNA_MuDR 582119 582379 29 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold332 WUBlastX LINE_Penelope 510656 510784 24 + . . . . . -1 -1 -1 . . . C26108 WUBlastX LINE_L2 2627 2950 47 + . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_RTE-X 144505 144663 75 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-X 543311 543487 57 - . . . . . -1 -1 -1 . . . scaffold40950 WUBlastX LINE_RTE-X 64186 64377 78 + . . scaffold40950 GLEAN mRNA 45067 69137 1 - . ID=CGI_10004590; scaffold175 WUBlastX LINE_RTE-X 253156 253359 55 - . . . . . -1 -1 -1 . . . scaffold35004 WUBlastX LINE_RTE-X 20171 20371 43 - . . scaffold35004 GLEAN mRNA 18894 21385 1 + . ID=CGI_10001394; scaffold42328 WUBlastX LINE_RTE-X 30735 30935 43 - . . scaffold42328 GLEAN mRNA 29569 31949 0.777732 + . ID=CGI_10006549; scaffold43842 WUBlastX LINE_RTE-X 195593 195772 47 + . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold473 WUBlastX LINE_Proto2 109061 109489 50 + . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_Maverick 167184 167345 55 - . . . . . -1 -1 -1 . . . scaffold41988 WUBlastX DNA_PiggyBac 94520 94807 43 + . . . . . -1 -1 -1 . . . scaffold870 WUBlastX LINE_RTE-X 129889 130077 45 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_RTE-BovB 633127 633429 47 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_RTE-X 58701 59108 35 + . . . . . -1 -1 -1 . . . scaffold1895 WUBlastX LINE_L1-Tx1 22871 23002 68 + . . scaffold1895 GLEAN mRNA 10144 35398 0.383689 - . ID=CGI_10010969; scaffold43932 WUBlastX DNA_TcMar-Tc2 190890 191042 64 + . . scaffold43932 GLEAN mRNA 184217 200506 0.993526 + . ID=CGI_10014122; scaffold41372 WUBlastX LINE_CR1 59956 60156 21 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Gypsy-Cigr 504274 504438 47 - . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LINE_L1 16504 16830 31 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold1217 WUBlastX LTR_Ngaro 47800 47907 38 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX DNA_Kolobok-IS4 638954 639718 68 - . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold1578 WUBlastX RC_Helitron 188026 188199 35 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX DNA_TcMar-Stowa 11901 12059 22 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Tc1 262743 263018 59 - . . scaffold1024 GLEAN mRNA 251261 271480 0.999675 - . ID=CGI_10028529; scaffold714 WUBlastX LINE_L1 300219 300302 20 - . . . . . -1 -1 -1 . . . scaffold40186 WUBlastX LINE_RTE-X 13285 13602 69 - . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_RTE-X 73369 73629 52 + . . scaffold41344 GLEAN mRNA 53161 73482 1 + . ID=CGI_10004980; scaffold305 WUBlastX DNA_TcMar-Marin 215108 215338 45 + . . . . . -1 -1 -1 . . . scaffold1393 WUBlastX DNA_Sola 10659 10943 61 + . . scaffold1393 GLEAN mRNA 1156 19168 0.544851 - . ID=CGI_10004890; scaffold1456 WUBlastX LTR_Ngaro 61737 61994 59 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc2 222563 222814 50 + . . . . . -1 -1 -1 . . . scaffold39522 WUBlastX DNA_TcMar-Tc1 12737 13333 41 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX DNA_TcMar-Tc1 639383 639673 72 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1-Tx1 1180587 1180994 28 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LTR_Pao 137668 137796 22 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LTR_Pao 138422 138679 29 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_CR1-L2 84525 84647 41 - . . scaffold1554 GLEAN mRNA 84456 84665 0.999372 - . ID=CGI_10017358; scaffold1554 WUBlastX LINE_CR1-L2 84939 85022 55 - . . . . . -1 -1 -1 . . . scaffold617 WUBlastX LINE_CR1 277762 278016 87 - . . scaffold617 GLEAN mRNA 268182 293713 0.999943 + . ID=CGI_10012737; scaffold40690 WUBlastX LINE_L2 34 462 82 + . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LINE_L2 128086 128520 82 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L2 851740 852300 64 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 530627 531214 71 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Gypsy 34 171 33 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_L1 166223 166435 27 + . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LINE_L1 22867 23061 51 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 1194834 1195028 69 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 676306 676389 22 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 676842 676955 47 + . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX LINE_RTE-BovB 11843 12085 78 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L1-Tx1 203375 203686 33 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX DNA_Crypton 244174 244263 55 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_IS4EU 68032 68190 50 + . . . . . -1 -1 -1 . . . scaffold527 WUBlastX LINE_L1-Tx1 309082 309300 61 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 1228056 1228358 52 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 324871 325002 45 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 325157 325372 26 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_PiggyBac 1337401 1337733 38 - . . scaffold1179 GLEAN mRNA 1337347 1343683 0.999954 - . ID=CGI_10027423; scaffold113 WUBlastX LINE_RTE-X 52248 52613 61 + . . . . . -1 -1 -1 . . . scaffold1396 WUBlastX LINE_RTE-X 284 421 46 + . . . . . -1 -1 -1 . . . scaffold43396 WUBlastX LTR_Ngaro 237754 237834 56 - . . scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold44098 WUBlastX LINE_RTE-BovB 500666 500818 88 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L1-Tx1 254377 254598 52 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold123 WUBlastX LINE_CR1-L2 151639 151980 94 + . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LTR_Ngaro 3149 4072 106 + . . . . . -1 -1 -1 . . . scaffold260 WUBlastX DNA_Crypton 48994 49308 105 - . . scaffold260 GLEAN mRNA 48314 65715 0.848653 - . ID=CGI_10003729; scaffold719 WUBlastX LINE_L1 320890 321225 73 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L1-Tx1 485814 486158 70 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; C28702 WUBlastX DNA_TcMar-Tc1 2260 2373 50 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Ngaro 125382 125606 70 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LTR_Gypsy 176098 176454 84 + . . scaffold1138 GLEAN mRNA 174466 179423 0.789389 + . ID=CGI_10015372; scaffold1345 WUBlastX DNA_IS4EU 185087 185347 21 + . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_L1 9753 9794 22 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX DNA_NOF 207392 207880 104 + . . scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold94 WUBlastX LINE_Penelope 221943 222152 28 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_RTE-BovB 236619 236768 65 + . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX LINE_RTE-X 57725 58099 82 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_RTE-BovB 108491 108721 130 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-X 385770 386066 124 + . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_CR1-L2 254891 255394 93 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Ngaro 442052 442462 75 + . . scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX LTR_Ngaro 442052 442462 75 + . . scaffold1018 GLEAN mRNA 435432 442583 0.542495 - . ID=CGI_10019773; scaffold378 WUBlastX LTR_Ngaro 313374 313856 57 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LTR_Ngaro 966864 966968 20 + . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold583 WUBlastX DNA_hAT-Blackja 259386 259487 33 - . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_Penelope 142630 142917 116 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX DNA_TcMar-Tc1 12891 13067 65 - . . . . . -1 -1 -1 . . . C30694 WUBlastX LTR_Copia 6009 6080 24 - . . C30694 GLEAN mRNA 5782 6153 1 - . ID=CGI_10000657; scaffold150 WUBlastX LTR_Ngaro 114394 114783 98 - . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 43551 44192 27 + . . scaffold605 GLEAN mRNA 41127 44213 1 + . ID=CGI_10004633; scaffold599 WUBlastX LINE_Penelope 10943 11275 91 - . . . . . -1 -1 -1 . . . scaffold33064 WUBlastX LINE_RTE-X 1860 2000 68 - . . . . . -1 -1 -1 . . . scaffold39068 WUBlastX LINE_RTE-X 11902 12363 111 + . . . . . -1 -1 -1 . . . scaffold39380 WUBlastX DNA_Academ 55943 56446 112 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 1311591 1311809 144 - . . . . . -1 -1 -1 . . . scaffold33382 WUBlastX LTR_Gypsy 9949 10446 24 - . . . . . -1 -1 -1 . . . scaffold39196 WUBlastX RC_Helitron 37939 38328 137 - . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold358 WUBlastX DNA_Harbinger 71427 71594 23 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX DNA_Harbinger 71638 71691 26 + . . . . . -1 -1 -1 . . . scaffold775 WUBlastX DNA_Harbinger 138244 138297 26 - . . . . . -1 -1 -1 . . . scaffold775 WUBlastX DNA_Harbinger 138341 138508 23 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Tc1 250202 250678 117 - . . scaffold1213 GLEAN mRNA 226891 261241 0.989794 + . ID=CGI_10027441; scaffold675 WUBlastX LINE_RTE-X 67854 68003 29 - . . . . . -1 -1 -1 . . . scaffold1508 WUBlastX LINE_RTE-X 174254 174337 39 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-X 57329 57697 104 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Gypsy-Cigr 41857 42864 504 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LTR_Gypsy-Cigr 338556 339047 171 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_ERV1 64722 65063 64 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold1188 WUBlastX LTR_Ngaro 288143 288358 112 + . . scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold100 WUBlastX LTR_ERV1 955549 955653 64 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1-Tx1 1703555 1704043 49 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_RTE-X 13932 14117 76 + . . . . . -1 -1 -1 . . . scaffold612 WUBlastX LINE_RTE-X 14122 14307 37 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_L2 125013 125459 92 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_DIRS 146625 148310 1061 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 364305 365990 1061 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX LTR_Gypsy 110377 112020 1082 + . . . . . -1 -1 -1 . . . scaffold399 WUBlastX LINE_L1-Tx1 173300 175264 914 - . . . . . -1 -1 -1 . . . scaffold37850 WUBlastX LTR_Gypsy 17907 19157 548 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Ngaro 115461 115586 21 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_Kolobok 147843 148010 84 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_Kolobok 812731 812898 84 + . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold1221 WUBlastX LINE_L1 390034 390657 30 + . . scaffold1221 GLEAN mRNA 352551 403939 0.753368 - . ID=CGI_10019745; scaffold43494 WUBlastX LTR_Ngaro 62684 63232 124 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_Proto2 389551 390279 62 - . . . . . -1 -1 -1 . . . scaffold38370 WUBlastX LTR_DIRS 43484 44098 135 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Sola 315604 315894 44 + . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_TcMar-Tc1 167431 167868 100 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX RC_Helitron 204985 205677 283 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 474471 476039 948 - . . . . . -1 -1 -1 . . . scaffold27958 WUBlastX LINE_L1 2348 2560 32 + . . . . . -1 -1 -1 . . . scaffold37006 WUBlastX LINE_L2 31101 31427 54 - . . scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold1711 WUBlastX LINE_CR1-L2 358767 359039 31 - . . . . . -1 -1 -1 . . . scaffold1566 WUBlastX LTR_Pao 6462 6860 128 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_Pao 174566 175045 167 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Gypsy 231582 231611 20 + . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX DNA_MuDR 86092 86331 41 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_Sola 451678 452289 114 + . . . . . -1 -1 -1 . . . C28218 WUBlastX LTR_Pao 5316 5369 36 - . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_L1-Tx1 82437 83297 265 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 101890 102144 40 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_Gypsy 189943 190461 169 + . . scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1843 WUBlastX DNA_Harbinger 219964 220461 170 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LTR_Ngaro 245036 245893 175 + . . scaffold43660 GLEAN mRNA 243562 254433 0.99966 - . ID=CGI_10011671; scaffold139 WUBlastX LTR_Ngaro 56901 57341 144 - . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_PiggyBac 113723 113905 85 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_RTE-BovB 140233 140379 30 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_RTE-BovB 140845 141015 49 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy-Cigr 228235 228630 49 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_CR1-L2 868074 868166 32 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_TcMar-Tc1 4029 4073 24 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_TcMar-Tc1 4688 5065 46 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1 174446 174676 27 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_RTE-X 102224 102880 145 - . . . . . -1 -1 -1 . . . scaffold38058 WUBlastX LTR_Gypsy 4718 4870 79 - . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold32282 WUBlastX LINE_CR1 439 603 21 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 430049 430093 24 + . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_I 80376 80426 22 - . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold1431 WUBlastX LINE_L1 43773 44582 61 + . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LINE_L1-Tx1 14365 15075 123 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX DNA_TcMar-Fot1 211394 212212 107 + . . . . . -1 -1 -1 . . . C33510 WUBlastX LINE_RTE-X 5162 5347 35 + . . . . . -1 -1 -1 . . . scaffold43648 WUBlastX LTR_Pao 117727 118173 250 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_CR1 292341 292487 53 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Ngaro 85112 85216 59 - . . scaffold1634 GLEAN mRNA 82464 85496 0.992943 + . ID=CGI_10005152; scaffold1560 WUBlastX LINE_RTE-X 154648 155382 125 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc1 732489 732650 84 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 48312 49976 1495 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LTR_DIRS 170682 171341 284 + . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold808 WUBlastX LTR_DIRS 171279 173324 1263 + . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold99 WUBlastX LTR_Pao 166279 166737 354 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_CR1 235848 236693 504 + . . scaffold142 GLEAN mRNA 226750 254431 0.969071 + . ID=CGI_10026760; scaffold1738 WUBlastX LTR_Gypsy 8150 9805 1071 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX DNA_Merlin 393112 393540 191 - . . . . . -1 -1 -1 . . . scaffold659 WUBlastX DNA_Maverick 85618 85863 156 - . . . . . -1 -1 -1 . . . C29954 WUBlastX DNA_TcMar-Tc1 4217 4345 24 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 1314637 1315323 200 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LTR_DIRS 169596 170039 210 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 285231 285470 75 + . . . . . -1 -1 -1 . . . scaffold41008 WUBlastX LTR_Ngaro 57743 57913 77 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_ERV1 316243 316677 109 + . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 129719 130576 233 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy-Troyk 314321 314512 50 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy-Troyk 314786 315049 202 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 516388 516738 341 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX DNA_hAT 781498 781671 49 + . . scaffold226 GLEAN mRNA 780022 794397 0.995567 + . ID=CGI_10025375; scaffold406 WUBlastX LTR_DIRS? 654067 654399 249 + . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LTR_Ngaro 286253 286963 173 - . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold952 WUBlastX LTR_Ngaro 10526 11215 204 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX DNA_Harbinger 121663 122028 237 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_Harbinger 9454 10152 230 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Tc1 1855544 1856293 236 + . . . . . -1 -1 -1 . . . scaffold31230 WUBlastX LINE_L1 8164 8889 252 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LINE_RTE-X 244713 244787 27 + . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1885 WUBlastX LTR_Gypsy 193806 194060 130 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX DNA_Maverick 13616 16006 1306 - . . scaffold298 GLEAN mRNA 12121 16223 1 - . ID=CGI_10018816; scaffold168 WUBlastX LINE_Jockey 586651 586752 40 - . . scaffold168 GLEAN mRNA 580127 599947 0.430988 + . ID=CGI_10025600; scaffold837 WUBlastX DNA_TcMar-Tc1 20943 21080 57 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Gypsy 312187 313521 894 + . . scaffold1800 GLEAN mRNA 309587 323793 0.999996 + . ID=CGI_10016406; scaffold101 WUBlastX LINE_L1-Tx1 366440 366739 150 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 366738 370193 1950 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LTR_Gypsy-Cigr 307292 307387 51 - . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LTR_Gypsy 9197 9424 136 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX DNA_IS4EU 99987 100238 118 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX DNA_IS4EU 100259 100468 96 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX DNA_IS4EU 100510 100626 49 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_hAT-Ac 463134 463373 112 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX DNA_TcMar-Pogo 1771 2283 154 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LINE_Proto2 5559 6224 83 + . . . . . -1 -1 -1 . . . scaffold40208 WUBlastX RC_Helitron 34978 35715 275 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold177 WUBlastX LINE_L1 5513 5791 200 + . . . . . -1 -1 -1 . . . scaffold40290 WUBlastX LINE_RTE-X 8485 8538 28 - . . scaffold40290 GLEAN mRNA 1168 10080 1 + . ID=CGI_10004018; scaffold847 WUBlastX LINE_RTE-X 285258 285458 117 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_hAT-Tip100 1282826 1283437 162 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LTR_DIRS 565423 565758 111 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold425 WUBlastX DNA_IS4EU 128056 128610 136 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold107 WUBlastX LINE_RTE-BovB 775954 776133 63 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_Kolobok 183719 184012 115 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold42022 WUBlastX LTR_DIRS 94568 94972 161 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_R2-Hero 78572 78712 23 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_R2-Hero 82001 82078 30 - . . . . . -1 -1 -1 . . . C26460 WUBlastX LTR_Ngaro 2973 3062 51 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_IS4EU 266358 266612 75 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 157622 157909 93 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_hAT-Ac 363315 363821 66 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX DNA_Sola 18256 18552 50 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1-Tx1 235356 236330 188 - . . scaffold630 GLEAN mRNA 233090 241701 0.61505 + . ID=CGI_10018330; scaffold630 WUBlastX LINE_L1-Tx1 235356 236330 188 - . . scaffold630 GLEAN mRNA 227950 240900 0.999747 - . ID=CGI_10018329; scaffold40440 WUBlastX LINE_CR1 38404 39033 88 + . . . . . -1 -1 -1 . . . scaffold534 WUBlastX DNA_hAT-Tip100 113000 113338 103 + . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX LINE_RTE-X 74020 74889 331 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LINE_RTE-X 746023 746625 315 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L1-Tx1 637577 637858 29 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Kolobok 292970 293254 150 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 294128 294349 67 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 295069 295311 103 + . . scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold226 WUBlastX LINE_RTE-X 405885 406271 27 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy 277333 278130 117 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1 548779 548925 69 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Gypsy 378751 379143 267 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Gypsy 379172 379375 103 + . . . . . -1 -1 -1 . . . scaffold30818 WUBlastX LTR_Gypsy 4548 4943 259 + . . . . . -1 -1 -1 . . . scaffold30818 WUBlastX LTR_Gypsy 5737 6144 100 + . . . . . -1 -1 -1 . . . scaffold43366 WUBlastX LTR_DIRS 83669 83932 78 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_Kolobok 183219 183359 49 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1703 WUBlastX LTR_Pao 179146 179445 241 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 177678 177938 61 + . . . . . -1 -1 -1 . . . scaffold1756 WUBlastX LINE_RTE-X 13795 15132 169 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_L2 70316 71470 319 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX DNA_hAT-Ac 333502 334074 203 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 193830 194933 80 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 534178 534720 126 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_IS4EU 187674 188108 283 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 9465 10931 394 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Gypsy 1039371 1040774 254 + . . . . . -1 -1 -1 . . . scaffold40134 WUBlastX DNA_Harbinger 28069 28320 106 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 29011 29136 116 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 29576 29746 123 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 29955 30140 31 + . . scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold853 WUBlastX LTR_Gypsy 454472 454576 26 - . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold1160 WUBlastX LTR_Gypsy 224739 224954 21 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX DNA_En-Spm 261371 263122 401 + . . scaffold210 GLEAN mRNA 246900 267736 0.958099 - . ID=CGI_10015891; scaffold210 WUBlastX DNA_En-Spm 261371 263122 401 + . . scaffold210 GLEAN mRNA 249471 268338 0.16485 + . ID=CGI_10015893; scaffold43836 WUBlastX LTR_Ngaro 298614 299591 405 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX DNA_TcMar-Tc1 169469 169582 23 + . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX DNA_TcMar-Tc1 169581 170027 182 + . . . . . -1 -1 -1 . . . scaffold308 WUBlastX DNA_Harbinger 211694 211906 142 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 72097 72369 131 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-X 410058 410189 25 + . . . . . -1 -1 -1 . . . scaffold38116 WUBlastX LINE_L1-Tx1 14174 14563 122 - . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LINE_RTE-X 52303 52812 185 - . . . . . -1 -1 -1 . . . C32516 WUBlastX LTR_Ngaro 6933 7787 305 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Harbinger 852850 853416 397 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX DNA_Harbinger 149333 149899 397 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 1481038 1482486 289 - . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LINE_L2 423314 423811 36 - . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold1634 WUBlastX LINE_L1-Tx1 61205 61474 25 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_Gypsy 595954 597387 577 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_TcMar-Tc1 412639 413640 439 + . . scaffold43 GLEAN mRNA 380222 414471 0.256408 - . ID=CGI_10021355; scaffold188 WUBlastX DNA_Harbinger 128730 128990 168 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Harbinger 129136 129558 323 + . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 64817 65530 243 + . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 65680 65739 37 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Kolobok-IS4 1108942 1109412 168 - . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LTR_Pao 167686 169194 654 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_L1-Tx1 305281 306822 539 - . . scaffold165 GLEAN mRNA 293161 307887 0.249814 - . ID=CGI_10015330; scaffold38934 WUBlastX DNA_Kolobok 48502 48858 33 - . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_RTE-X 35864 36133 168 + . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_RTE-X 36175 36429 47 + . . . . . -1 -1 -1 . . . C30188 WUBlastX LINE_RTE-X 2014 3318 589 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 495470 496909 622 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 492796 493275 81 + . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_RTE-X 66667 67515 229 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 138124 139272 728 - . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold750 WUBlastX LINE_Penelope 42039 42989 172 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_Penelope 42986 43102 23 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_Penelope 43066 43620 378 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_Penelope 43728 44237 139 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_RTE-X 1114518 1115015 330 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Pao 90906 91022 21 - . . . . . -1 -1 -1 . . . scaffold42390 WUBlastX LTR_Gypsy 84720 84842 39 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_L1-Tx1 101104 101547 62 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_L2 136224 136874 90 + . . . . . -1 -1 -1 . . . scaffold1228 WUBlastX LINE_CR1-L2 474911 475132 56 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold1021 WUBlastX LINE_CR1 451856 452254 51 + . . scaffold1021 GLEAN mRNA 448242 473584 0.324995 - . ID=CGI_10022500; scaffold129 WUBlastX LINE_L2 61687 62043 61 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L2 587451 587531 20 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1 295693 295905 24 + . . . . . -1 -1 -1 . . . scaffold148 WUBlastX LINE_L2 41196 41531 40 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Pao 714623 714823 72 + . . scaffold102 GLEAN mRNA 701339 715746 0.984575 + . ID=CGI_10028447; scaffold588 WUBlastX LINE_L1 106502 106747 31 + . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LINE_LOA 8535 8870 73 - . . . . . -1 -1 -1 . . . C26726 WUBlastX LTR_Pao 2548 2673 45 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Copia 668693 668872 24 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_L2 133893 134372 63 + . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy 117256 117453 31 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 49713 49817 49 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 37975 38286 22 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold396 WUBlastX DNA_Kolobok-IS4 470545 470748 59 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_ERVK 172147 172257 58 + . . scaffold395 GLEAN mRNA 166343 179904 0.937847 + . ID=CGI_10013977; scaffold756 WUBlastX DNA_Kolobok-IS4 343020 343568 67 - . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold593 WUBlastX DNA_Kolobok-IS4 45648 45887 48 - . . . . . -1 -1 -1 . . . C26486 WUBlastX LINE_Penelope 3286 3663 49 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_NOF? 481705 481818 46 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LINE_L2 170987 171127 44 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold364 WUBlastX LINE_L1 414003 414194 75 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L2 117095 117313 46 + . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LINE_L1 331406 331738 56 + . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1-Tx1 139465 139953 41 - . . . . . -1 -1 -1 . . . C33204 WUBlastX LINE_L1 12633 12848 33 + . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LINE_L1 103991 104029 20 + . . . . . -1 -1 -1 . . . scaffold30078 WUBlastX LINE_L1 6207 6386 44 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_Penelope 459648 459920 53 - . . . . . -1 -1 -1 . . . scaffold549 WUBlastX LINE_RTE-X 8416 8565 26 - . . scaffold549 GLEAN mRNA 463 9456 0.999993 + . ID=CGI_10004100; scaffold748 WUBlastX LINE_RTE-BovB 285775 286119 31 + . . . . . -1 -1 -1 . . . C22754 WUBlastX LINE_RTE-X 1818 1889 32 + . . . . . -1 -1 -1 . . . C22754 WUBlastX LINE_RTE-X 1892 1966 50 + . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LINE_RTE-X 20524 20787 22 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LTR_Gypsy 272164 272460 57 - . . . . . -1 -1 -1 . . . scaffold955 WUBlastX DNA_Maverick 107387 107698 37 + . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold37532 WUBlastX DNA_PiggyBac 13261 13410 32 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX DNA_PiggyBac 819627 819836 74 - . . . . . -1 -1 -1 . . . scaffold39122 WUBlastX LINE_RTE-X 63423 63695 59 + . . . . . -1 -1 -1 . . . scaffold809 WUBlastX LINE_RTE-X 102954 103313 60 + . . scaffold809 GLEAN mRNA 102798 115167 0.991748 + . ID=CGI_10006490; scaffold192 WUBlastX LINE_RTE-X 246951 247355 41 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_RTE-X 2581 2808 46 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-X 1244766 1244945 60 + . . scaffold1301 GLEAN mRNA 1240763 1263950 0.99974 - . ID=CGI_10027768; scaffold1200 WUBlastX LINE_RTE-X 39020 39139 25 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 932543 932848 54 - . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX DNA_TcMar-Marin 76013 76078 22 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_RTE-X 377343 377432 31 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 29658 29897 22 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold1244 WUBlastX LINE_L1-Tx1 99486 99644 49 + . . scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold1093 WUBlastX LINE_L1-Tx1 105268 105522 34 - . . . . . -1 -1 -1 . . . scaffold533 WUBlastX DNA_TcMar-Tc1 24928 25119 25 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX DNA_hAT-Blackja 542976 543131 29 - . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L2 169020 169088 22 + . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_L2 29877 30059 60 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LTR_Gypsy 616480 616869 74 + . . . . . -1 -1 -1 . . . scaffold38256 WUBlastX LTR_Gypsy 4349 4510 39 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Harbinger 390708 390920 79 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_IS4EU 9332 9586 50 + . . scaffold317 GLEAN mRNA 7090 24632 0.990181 + . ID=CGI_10019337; scaffold34968 WUBlastX LINE_Penelope 20212 20289 42 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_RTE-X 222155 222433 59 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 1180 1428 66 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_TcMar-Tc1 261046 261288 36 + . . scaffold43920 GLEAN mRNA 253407 262803 0.999991 + . ID=CGI_10013995; scaffold39352 WUBlastX LINE_L1 60467 60511 20 - . . . . . -1 -1 -1 . . . scaffold1564 WUBlastX DNA_hAT-Ac 108129 108248 45 - . . scaffold1564 GLEAN mRNA 80148 112523 0.650997 - . ID=CGI_10005199; scaffold891 WUBlastX LINE_L2 174992 175108 78 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 40359 40631 53 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX LTR_Ngaro 169737 170000 35 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_Kolobok-IS4 303630 303803 29 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_Kolobok-IS4 304240 304365 29 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_IS4EU 346412 346558 35 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX DNA_IS4EU 346630 346767 30 - . . . . . -1 -1 -1 . . . scaffold1621 WUBlastX DNA_IS4EU 3612 3737 25 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_hAT-Ac 1538379 1538609 81 - . . scaffold102 GLEAN mRNA 1532525 1541174 0.3501 - . ID=CGI_10028505; scaffold578 WUBlastX DNA_P 26294 26563 95 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold1097 WUBlastX LINE_L1 618310 618525 62 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 38249 38425 87 - . . scaffold544 GLEAN mRNA 36952 44048 1 + . ID=CGI_10022544; scaffold655 WUBlastX LINE_RTE-X 323304 323477 71 - . . . . . -1 -1 -1 . . . scaffold710 WUBlastX LINE_RTE-X 6197 6388 54 + . . . . . -1 -1 -1 . . . scaffold1191 WUBlastX LINE_RTE-X 93749 93898 98 + . . scaffold1191 GLEAN mRNA 88841 97999 0.89115 + . ID=CGI_10005212; scaffold53 WUBlastX LINE_RTE-X 736493 736645 22 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Sola 509685 509828 68 + . . scaffold1698 GLEAN mRNA 503808 514720 0.638313 + . ID=CGI_10019389; scaffold160 WUBlastX LTR_Gypsy 122492 123019 97 + . . . . . -1 -1 -1 . . . scaffold35574 WUBlastX LINE_L1-Tx1 2701 2826 28 - . . . . . -1 -1 -1 . . . scaffold35574 WUBlastX LINE_L1-Tx1 3753 3824 21 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Pao 204518 204745 32 - . . . . . -1 -1 -1 . . . scaffold770 WUBlastX LTR_Gypsy-Cigr 147254 147640 76 - . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_CR1-L2 48011 48349 68 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_DIRS 845508 845900 37 + . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX DNA_Crypton 139408 139614 61 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 243916 244083 64 + . . . . . -1 -1 -1 . . . scaffold756 WUBlastX LTR_Gypsy 260123 260323 127 - . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX DNA_Kolobok 115626 115754 24 - . . scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold41982 WUBlastX LINE_L1 44517 44744 23 + . . . . . -1 -1 -1 . . . scaffold1608 WUBlastX DNA_NOF 73721 73963 53 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_RTE-BovB 143322 143438 98 - . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_RTE-BovB 245666 245734 37 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_RTE-BovB 245740 245826 59 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LINE_RTE-X 240548 240664 33 + . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX LINE_L1 460832 460876 26 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LTR_DIRS 171605 171727 31 + . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LTR_DIRS 171812 172135 57 + . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L1-Tx1 29622 29879 38 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_L2 30049 30255 108 - . . . . . -1 -1 -1 . . . scaffold132 WUBlastX LTR_Pao 102877 103479 21 - . . scaffold132 GLEAN mRNA 102412 105318 0.999415 - . ID=CGI_10004713; scaffold880 WUBlastX DNA_Harbinger 456838 457125 72 - . . . . . -1 -1 -1 . . . scaffold34098 WUBlastX DNA_Harbinger 5138 5425 71 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LINE_L1 419525 420328 49 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_TcMar-Tc1 346607 346984 89 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_L2 165715 166212 67 + . . scaffold381 GLEAN mRNA 121685 178510 0.998567 - . ID=CGI_10017555; scaffold312 WUBlastX DNA_Maverick 37882 37980 20 - . . . . . -1 -1 -1 . . . scaffold42754 WUBlastX LINE_RTE-X 30747 31418 45 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Ngaro 1565817 1566188 55 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_RTE-X 335934 336203 49 - . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LINE_L1-Tx1 194729 195025 62 + . . scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold1896 WUBlastX LINE_L2 481418 482242 68 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 910463 911074 73 - . . scaffold1179 GLEAN mRNA 910112 912193 0.727725 - . ID=CGI_10027392; scaffold4 WUBlastX DNA_IS4EU 219576 219998 110 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_L2 568635 569243 61 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold383 WUBlastX LINE_RTE-X 424579 424833 24 + . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_RTE-X 25017 25394 30 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_RTE-X 7193 7525 94 - . . scaffold783 GLEAN mRNA 2790 33865 0.358594 + . ID=CGI_10011675; scaffold351 WUBlastX LINE_L1-Tx1 236230 236970 73 - . . . . . -1 -1 -1 . . . scaffold41136 WUBlastX LINE_L1-Tx1 89490 89948 44 - . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_L1-Tx1 192060 192371 78 - . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LINE_L1-Tx1 291013 291324 68 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX DNA_TcMar-Tc1 288072 288176 39 - . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LINE_CR1 148 765 85 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LTR_Pao 471691 471954 135 + . . . . . -1 -1 -1 . . . scaffold37508 WUBlastX LTR_Gypsy 33624 34118 68 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 102996 103109 31 + . . scaffold1759 GLEAN mRNA 83905 106418 0.889634 + . ID=CGI_10010906; scaffold1362 WUBlastX DNA_hAT-hATw 524937 525449 101 - . . . . . -1 -1 -1 . . . scaffold654 WUBlastX LTR_ERV1 67505 67705 34 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_I-Nimb 35050 35274 47 - . . . . . -1 -1 -1 . . . scaffold39744 WUBlastX LINE_L1 24243 25244 33 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_Kolobok 33668 34024 45 - . . . . . -1 -1 -1 . . . scaffold39744 WUBlastX LINE_RTE-X 23572 23871 98 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 253024 253314 113 - . . . . . -1 -1 -1 . . . scaffold43130 WUBlastX LINE_RTE-X 122354 122599 90 + . . scaffold43130 GLEAN mRNA 99127 140133 0.992485 - . ID=CGI_10008963; scaffold1699 WUBlastX LINE_RTE-X 16802 16936 53 + . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LINE_RTE-X 7577 7852 102 + . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_CR1-L2 181023 181454 83 - . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_CR1 298768 298968 112 - . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX DNA_IS4EU 193626 193835 69 + . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX DNA_IS4EU 194145 194234 52 + . . . . . -1 -1 -1 . . . scaffold589 WUBlastX DNA_Kolobok-IS4 50901 51284 110 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L1-Tx1 114221 114571 67 - . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX LINE_L1-Tx1 88895 89218 71 + . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX LTR_Gypsy 20896 21189 49 - . . scaffold1884 GLEAN mRNA 17991 22167 1 - . ID=CGI_10012006; scaffold39804 WUBlastX LINE_Jockey 53881 54027 34 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold1659 WUBlastX DNA_Harbinger 6904 7071 103 + . . scaffold1659 GLEAN mRNA 4365 18372 0.650917 + . ID=CGI_10001326; scaffold296 WUBlastX DNA_hAT-Ac 56734 56901 89 - . . scaffold296 GLEAN mRNA 44577 61658 0.928323 - . ID=CGI_10011690; scaffold296 WUBlastX DNA_hAT-Ac 56909 57283 48 - . . scaffold296 GLEAN mRNA 44577 61658 0.928323 - . ID=CGI_10011690; scaffold41754 WUBlastX LINE_RTE-X 88595 88810 29 + . . scaffold41754 GLEAN mRNA 79569 95321 0.84848 - . ID=CGI_10005558; scaffold43280 WUBlastX LTR_Ngaro 41126 41866 57 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_CR1-L2 53699 54055 81 + . . scaffold753 GLEAN mRNA 36571 68340 0.958809 + . ID=CGI_10014195; scaffold1800 WUBlastX LINE_CR1 262527 262958 140 - . . scaffold1800 GLEAN mRNA 251153 263258 0.999949 - . ID=CGI_10016404; scaffold366 WUBlastX DNA_Harbinger 119188 119361 92 - . . scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold43242 WUBlastX LINE_Penelope 3520 4047 127 - . . . . . -1 -1 -1 . . . scaffold258 WUBlastX LINE_RTE-X 280196 280513 146 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 516746 516802 21 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-X 57757 58194 34 + . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 158160 158783 236 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Gypsy 157148 157597 72 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_Academ 781880 782068 62 + . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_L1-Tx1 364458 365153 373 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_L1-Tx1 365141 365575 204 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_L1 3093 3185 35 + . . . . . -1 -1 -1 . . . scaffold38354 WUBlastX LTR_Gypsy 3418 3600 97 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Gypsy 121992 122834 46 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold43676 WUBlastX LINE_RTE-BovB 12118 12330 88 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_RTE-BovB 83028 83219 53 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy-Cigr 101158 101439 240 - . . . . . -1 -1 -1 . . . scaffold33064 WUBlastX LINE_L1-Tx1 4646 5434 107 - . . . . . -1 -1 -1 . . . scaffold33064 WUBlastX LINE_L1-Tx1 5451 5906 199 - . . . . . -1 -1 -1 . . . scaffold33064 WUBlastX LINE_L1-Tx1 5902 6114 45 - . . . . . -1 -1 -1 . . . scaffold33064 WUBlastX LINE_L1-Tx1 6116 6820 539 - . . . . . -1 -1 -1 . . . C29134 WUBlastX LTR_Ngaro 4056 5087 68 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 796849 797067 27 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_L1 262727 262783 24 + . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX DNA_PiggyBac 18483 18677 55 - . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX DNA_PiggyBac 18911 19201 115 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 265633 265875 62 + . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_RTE-X 314147 314899 70 - . . scaffold631 GLEAN mRNA 311038 316999 0.99846 - . ID=CGI_10014187; scaffold44098 WUBlastX DNA_hAT 166700 167104 194 + . . scaffold44098 GLEAN mRNA 163319 167512 1 + . ID=CGI_10017705; scaffold1322 WUBlastX DNA_hAT-Ac 364093 364317 55 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Pao 315023 315124 24 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LTR_Ngaro 203244 203543 74 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_TcMar-Marin 726724 727026 118 + . . . . . -1 -1 -1 . . . scaffold43024 WUBlastX LINE_Penelope 38422 38895 109 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_Kolobok 455799 456176 165 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 89331 89879 87 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1228 WUBlastX LINE_RTE-BovB 47375 47665 34 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_CR1 451687 452877 645 + . . scaffold789 GLEAN mRNA 449746 456527 1 + . ID=CGI_10017205; scaffold43708 WUBlastX LINE_L2 239241 239300 21 - . . scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold204 WUBlastX DNA_Crypton 561247 561351 22 + . . scaffold204 GLEAN mRNA 555644 562519 0.999351 + . ID=CGI_10026117; scaffold204 WUBlastX DNA_Crypton 561539 562402 153 + . . scaffold204 GLEAN mRNA 555644 562519 0.999351 + . ID=CGI_10026117; scaffold728 WUBlastX DNA_TcMar-Tc1 407939 408100 76 + . . . . . -1 -1 -1 . . . scaffold1763 WUBlastX LINE_RTE-X 538323 538514 28 + . . . . . -1 -1 -1 . . . scaffold1763 WUBlastX LINE_RTE-X 539079 539390 31 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LTR_DIRS 305267 305737 38 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LTR_DIRS 305709 305933 127 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 324411 326069 1250 - . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LINE_RTE-X 7156 10602 941 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Gypsy 198515 199348 173 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1 760610 761044 91 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L2 706531 707211 92 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_DIRS 86295 86603 91 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_Kolobok-IS4 466201 466992 155 - . . . . . -1 -1 -1 . . . scaffold41388 WUBlastX LTR_Ngaro 99625 100074 154 - . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX DNA_MuDR 63437 63634 97 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold835 WUBlastX DNA_MuDR 409653 410198 118 - . . . . . -1 -1 -1 . . . scaffold200 WUBlastX LINE_Proto2 93982 94302 41 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L2 288632 289102 137 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX LTR_Ngaro 110511 110804 138 - . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1 47031 47108 22 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 932571 933257 25 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX DNA_TcMar-Tc1 73117 73230 30 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 1186154 1188109 962 + . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 26079 26582 61 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Pao 5381 5770 184 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_L1-Tx1 57513 58091 146 + . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LINE_RTE-X 52026 52547 56 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 627923 628651 250 - . . scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold247 WUBlastX LTR_DIRS 520333 520443 49 + . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Ngaro 77911 78669 189 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_RTE-X 165605 166027 132 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy-Cigr 676605 677252 133 - . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold365 WUBlastX LTR_Pao 233808 234341 23 - . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LINE_RTE-BovB 58222 58383 83 - . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LINE_RTE-BovB 58370 58600 92 - . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LINE_RTE-BovB 60075 60197 22 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LTR_Pao 288283 288570 283 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold616 WUBlastX LINE_L1-Tx1 128140 128868 81 + . . scaffold616 GLEAN mRNA 126038 136791 1 + . ID=CGI_10015389; scaffold248 WUBlastX LINE_RTE-X 152626 152826 85 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 245889 246014 30 - . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LTR_Pao 28023 28397 216 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_RTE-X 165964 166131 76 + . . . . . -1 -1 -1 . . . scaffold1588 WUBlastX LINE_RTE-X 71969 72430 230 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold347 WUBlastX LTR_Gypsy 565091 568918 2011 - . . . . . -1 -1 -1 . . . scaffold1844 WUBlastX LINE_L2 136189 137079 171 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Ngaro 304899 304985 35 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_RTE-X 96786 97364 103 + . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 63347 64360 218 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 76530 77459 702 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 78558 79052 566 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1-Tx1 121917 122141 86 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold1343 WUBlastX DNA_Maverick 100638 100958 99 + . . scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold117 WUBlastX LINE_L2 8293 9195 207 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX DNA_Harbinger 340540 340722 62 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy 489963 490874 780 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold37722 WUBlastX LINE_L2 44180 45415 122 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_DIRS 179791 180216 235 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Ngaro 87184 87465 22 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 83595 84095 147 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 65708 65803 28 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 65815 66063 134 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 66969 67055 41 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LTR_Ngaro 67043 67234 109 + . . . . . -1 -1 -1 . . . scaffold36026 WUBlastX DNA_NOF 27600 27767 33 + . . . . . -1 -1 -1 . . . scaffold36026 WUBlastX DNA_NOF 27871 28224 254 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 396908 397780 125 - . . scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold43552 WUBlastX DNA_TcMar-Tc1 166552 166671 25 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_L2 652220 653419 213 + . . scaffold128 GLEAN mRNA 640571 661683 0.836156 - . ID=CGI_10021536; scaffold1479 WUBlastX LTR_Gypsy 3361 4308 114 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_CR1 174097 174282 106 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1 401779 402081 39 + . . scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold100 WUBlastX LINE_L1-Tx1 868117 868572 40 - . . . . . -1 -1 -1 . . . scaffold814 WUBlastX LINE_CR1 124892 125041 40 - . . . . . -1 -1 -1 . . . scaffold814 WUBlastX LINE_CR1 125313 125396 20 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_DIRS 436776 437234 337 + . . scaffold394 GLEAN mRNA 435520 450975 0.532272 + . ID=CGI_10022085; scaffold64 WUBlastX DNA_Harbinger 124610 125065 301 + . . scaffold64 GLEAN mRNA 118246 132595 0.997548 - . ID=CGI_10005753; scaffold41214 WUBlastX LINE_RTE-X 198 947 213 - . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_RTE-X 712 1161 84 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LTR_DIRS 287953 288591 284 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX DNA_TcMar-Tc1 163041 163991 174 - . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX LINE_L2 895 1152 130 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_RTE-X 1040703 1041503 250 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy 43562 43717 27 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_L1 129839 130150 222 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_L1 130246 130419 29 + . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX DNA_Sola 81460 82308 318 + . . scaffold43708 GLEAN mRNA 71613 92556 0.999995 + . ID=CGI_10011967; scaffold625 WUBlastX LINE_Jockey 601375 602718 208 - . . scaffold625 GLEAN mRNA 587493 614849 0.872449 - . ID=CGI_10023425; scaffold625 WUBlastX LINE_Jockey 601375 602718 208 - . . scaffold625 GLEAN mRNA 593175 626759 0.878872 + . ID=CGI_10023426; scaffold43552 WUBlastX LTR_Gypsy 163663 163770 77 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LTR_Gypsy 164002 164916 271 + . . . . . -1 -1 -1 . . . scaffold522 WUBlastX RC_Helitron 534992 535072 28 + . . . . . -1 -1 -1 . . . scaffold522 WUBlastX RC_Helitron 535248 535712 67 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_RTE-X 107781 108131 192 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 479388 480110 294 - . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX LINE_RTE-X 61753 62160 235 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_PiggyBac 352392 353018 167 + . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_RTE-X 90420 90575 78 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 78121 78621 204 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 79031 79195 110 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 706746 706961 26 + . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 707133 707621 135 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_RTE-X 189104 190468 146 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 86034 86132 58 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 795067 795525 64 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 2617 3117 122 - . . . . . -1 -1 -1 . . . scaffold38272 WUBlastX LINE_L1-Tx1 37974 38510 119 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1-Tx1 38465 38749 98 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold409 WUBlastX DNA_TcMar-Marin 60615 60902 191 + . . scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold1228 WUBlastX LINE_RTE-X 477041 477736 165 - . . scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold43804 WUBlastX DNA_hAT-Tip100 268585 268989 111 - . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX DNA_hAT-Tip100 270069 271052 274 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_hAT 106504 106701 110 - . . scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold1889 WUBlastX LTR_Gypsy 32218 32853 169 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_En-Spm 98350 99252 235 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 21744 22010 41 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 22645 23217 393 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Pao 550680 551966 104 - . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_L1-Tx1 242042 242497 62 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1-Tx1 171057 171305 22 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1-Tx1 601692 602027 53 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L2 509467 510576 215 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold1810 WUBlastX LTR_Ngaro 48181 48459 77 + . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_L1-Tx1 84238 84402 24 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold448 WUBlastX LINE_L1-Tx1 1002672 1003406 308 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_L1-Tx1 1003447 1003941 178 - . . . . . -1 -1 -1 . . . scaffold64 WUBlastX LTR_DIRS 64552 65574 484 - . . . . . -1 -1 -1 . . . scaffold64 WUBlastX LTR_DIRS 65708 66220 70 - . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L1-Tx1 301976 302734 51 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LTR_Gypsy 192625 192759 35 + . . scaffold189 GLEAN mRNA 162558 220166 0.999165 - . ID=CGI_10018675; scaffold1255 WUBlastX DNA_Maverick 349722 350939 589 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 8061 8576 32 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1094420 1094485 21 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold977 WUBlastX LINE_L1-Tx1 364131 364211 22 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX LINE_L1-Tx1 365500 365865 105 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LTR_Gypsy 124422 125213 91 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_L1-Tx1 7914 8507 224 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_L1-Tx1 8554 9525 184 + . . . . . -1 -1 -1 . . . C36038 WUBlastX LTR_Gypsy 20388 20615 36 - . . . . . -1 -1 -1 . . . scaffold707 WUBlastX LTR_Gypsy 4422 5198 251 + . . . . . -1 -1 -1 . . . scaffold43562 WUBlastX LINE_RTE-X 132303 132968 103 - . . scaffold43562 GLEAN mRNA 120653 134746 0.91935 - . ID=CGI_10011033; scaffold1715 WUBlastX LINE_Penelope 326983 327963 408 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold456 WUBlastX LTR_Gypsy 142031 142684 605 + . . scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold42892 WUBlastX LINE_L1-Tx1 104866 105546 335 + . . . . . -1 -1 -1 . . . scaffold42892 WUBlastX LINE_L1-Tx1 105536 106774 199 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 1077890 1078504 69 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LTR_Gypsy 208640 208753 20 - . . . . . -1 -1 -1 . . . scaffold33082 WUBlastX LINE_RTE-X 7447 7728 162 - . . scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold581 WUBlastX LTR_Ngaro 132906 134459 702 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_Penelope 315412 316995 700 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 429518 429922 231 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 465897 467201 748 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Gypsy 467559 467774 165 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1-Tx1 186953 187312 189 + . . scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold43692 WUBlastX LINE_CR1 134348 134392 25 + . . . . . -1 -1 -1 . . . scaffold1726 WUBlastX LINE_CR1 361419 361565 74 + . . . . . -1 -1 -1 . . . scaffold1777 WUBlastX LINE_L2 51811 52425 51 - . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX DNA_hAT-Tip100 303696 303917 45 - . . . . . -1 -1 -1 . . . scaffold998 WUBlastX LTR_Pao 42894 43016 51 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Pao 402501 403055 38 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Pao 436249 436434 66 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Pao 1202520 1202759 38 - . . scaffold433 GLEAN mRNA 1202502 1202765 0.999995 - . ID=CGI_10027118; scaffold39126 WUBlastX DNA_TcMar-Marin 3575 3700 49 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_CR1 440957 441013 28 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_CR1 441896 441994 27 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_L2 144738 145205 22 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_CR1 511675 511842 41 - . . . . . -1 -1 -1 . . . scaffold34534 WUBlastX LINE_CR1-L2 15085 15297 51 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 249637 250221 55 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Gypsy 229781 230020 51 - . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LTR_Gypsy 53008 53427 69 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_L2 884502 884735 44 - . . scaffold492 GLEAN mRNA 881318 888477 0.999998 + . ID=CGI_10024872; scaffold993 WUBlastX LINE_L2 137601 137708 32 - . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LTR_Ngaro 40624 40854 49 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 285940 286101 53 + . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Gypsy 477755 478108 36 + . . scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold4 WUBlastX RC_Helitron 279251 279343 30 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX RC_Helitron 271640 271801 71 + . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold1186 WUBlastX DNA_IS4EU 262106 262306 71 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_IS4EU 247648 247824 38 + . . scaffold983 GLEAN mRNA 244830 248843 1 - . ID=CGI_10014030; scaffold35806 WUBlastX DNA_IS4EU 21854 22117 31 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 79641 79760 32 - . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LTR_Gypsy 79955 80392 53 - . . scaffold143 GLEAN mRNA 79775 80164 0.986676 - . ID=CGI_10010008; scaffold143 WUBlastX LTR_Gypsy 79955 80392 53 - . . scaffold143 GLEAN mRNA 80214 80516 0.776794 - . ID=CGI_10010009; scaffold387 WUBlastX DNA_Harbinger 24676 24798 55 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX DNA_Kolobok 233324 233710 35 - . . scaffold1382 GLEAN mRNA 229926 239669 0.88642 - . ID=CGI_10011181; scaffold222 WUBlastX DNA_Kolobok 152803 152958 29 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_L1-Tx1 137727 137930 62 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LINE_L1-Tx1 12567 12722 88 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L1 515134 515391 32 - . . scaffold425 GLEAN mRNA 510364 519174 0.533682 - . ID=CGI_10025986; scaffold1097 WUBlastX LINE_L1 417022 417900 36 - . . scaffold1097 GLEAN mRNA 400759 423931 0.739463 - . ID=CGI_10024529; scaffold1377 WUBlastX LINE_L1 106231 107109 36 + . . scaffold1377 GLEAN mRNA 106879 107493 0.962665 + . ID=CGI_10008620; scaffold143 WUBlastX LINE_L1 192032 192910 36 - . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold461 WUBlastX LINE_L1 73601 74062 33 - . . . . . -1 -1 -1 . . . scaffold98 WUBlastX LINE_L1 336861 337004 44 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 103563 103793 25 + . . . . . -1 -1 -1 . . . scaffold1195 WUBlastX LINE_L1 290513 290848 76 - . . scaffold1195 GLEAN mRNA 290174 296026 0.541928 - . ID=CGI_10012102; scaffold1484 WUBlastX LINE_L1 220338 220517 20 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1 128073 128123 25 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1 154387 154875 53 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_L1 978031 978330 34 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LTR_ERV1 94688 95149 60 - . . . . . -1 -1 -1 . . . scaffold36808 WUBlastX LTR_ERV1 1481 1654 23 + . . scaffold36808 GLEAN mRNA 630 10745 0.703847 - . ID=CGI_10002145; scaffold1144 WUBlastX LTR_ERV1 78833 79006 23 - . . scaffold1144 GLEAN mRNA 78922 87445 0.757486 - . ID=CGI_10013959; scaffold817 WUBlastX DNA_MuDR 47596 47766 54 - . . scaffold817 GLEAN mRNA 47004 50153 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47886 48044 54 - . . scaffold817 GLEAN mRNA 47004 50153 0.999225 - . ID=CGI_10008654; scaffold40512 WUBlastX DNA_MuDR 90275 90547 59 - . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX DNA_MuDR 2209 2511 55 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_L1 168965 169090 49 + . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LINE_L1 60507 60794 29 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold1480 WUBlastX LINE_R1 167565 167867 51 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX DNA_TcMar-Tc1 927039 927101 21 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX DNA_TcMar-Fot1 83135 83500 45 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_RTE-BovB 24031 24222 75 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_RTE-BovB 52207 52539 64 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold396 WUBlastX LINE_RTE-BovB 204437 204826 36 + . . scaffold396 GLEAN mRNA 196799 208805 0.948886 - . ID=CGI_10018103; scaffold422 WUBlastX LINE_RTE-X 189745 189939 50 - . . scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold510 WUBlastX LINE_RTE-BovB 320075 320275 58 - . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LTR_DIRS 161275 161379 60 + . . scaffold603 GLEAN mRNA 158326 164604 1 - . ID=CGI_10009905; scaffold145 WUBlastX DNA_TcMar-Tc1 422336 422539 31 + . . scaffold145 GLEAN mRNA 417763 440555 0.648525 - . ID=CGI_10026557; scaffold33036 WUBlastX DNA_TcMar-Marin 11582 11740 44 + . . scaffold33036 GLEAN mRNA 1876 11676 0.76238 + . ID=CGI_10000985; scaffold471 WUBlastX DNA_TcMar-Marin 624311 624475 53 - . . . . . -1 -1 -1 . . . scaffold445 WUBlastX DNA_Harbinger 257426 257536 61 - . . . . . -1 -1 -1 . . . scaffold1230 WUBlastX DNA_TcMar-Tc1 94367 94495 31 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-Tc1 866552 866656 20 - . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX DNA_TcMar-Tc1 131662 131802 56 - . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX DNA_TcMar-Tc1 8740 9048 39 - . . scaffold1454 GLEAN mRNA 4447 15298 0.999999 - . ID=CGI_10004310; scaffold41766 WUBlastX DNA_TcMar-Tc1 86051 86149 58 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_L1-Tx1 95456 95791 21 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 321589 321903 25 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_L1-Tx1 114595 114810 33 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_L2 107703 108116 67 - . . . . . -1 -1 -1 . . . scaffold31684 WUBlastX LINE_L2 2032 2133 53 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L2 1257612 1257827 57 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 38612 38962 90 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_CR1-L2 70024 70083 56 - . . . . . -1 -1 -1 . . . scaffold40076 WUBlastX LTR_Gypsy 62408 62479 30 + . . scaffold40076 GLEAN mRNA 50026 69256 0.72657 + . ID=CGI_10003787; scaffold733 WUBlastX LINE_Penelope 513170 513403 32 - . . scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold40154 WUBlastX DNA_Sola 68275 68583 42 + . . . . . -1 -1 -1 . . . scaffold40154 WUBlastX DNA_Sola 68615 68674 21 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1-Tx1 232022 232330 24 - . . scaffold1097 GLEAN mRNA 224191 235119 0.686153 - . ID=CGI_10024512; scaffold1814 WUBlastX LINE_L1-Tx1 22852 23397 29 - . . . . . -1 -1 -1 . . . scaffold1577 WUBlastX LINE_CR1-L2 36369 36515 21 + . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LINE_L2-Hydra 195781 195975 26 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_CR1-L2 130034 130120 40 - . . . . . -1 -1 -1 . . . scaffold41372 WUBlastX LINE_L1-Tx1 90341 90625 81 + . . . . . -1 -1 -1 . . . scaffold1490 WUBlastX LTR_Gypsy 156011 156592 90 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX DNA_PiggyBac 630024 630137 30 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX DNA_PiggyBac 630253 630453 45 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_hAT-Tip100 101860 102924 42 + . . . . . -1 -1 -1 . . . C30176 WUBlastX LTR_DIRS 7226 7516 93 + . . . . . -1 -1 -1 . . . scaffold666 WUBlastX LTR_Ngaro 9519 9932 25 + . . . . . -1 -1 -1 . . . scaffold34580 WUBlastX LTR_DIRS 14673 14837 107 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Ngaro 554774 554995 100 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX DNA_Kolobok 111173 111373 60 - . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX DNA_TcMar-Tc2 75556 75942 101 - . . . . . -1 -1 -1 . . . scaffold38186 WUBlastX DNA_IS4EU 5 202 35 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX DNA_hAT-Tip100 40999 41106 38 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_Penelope 322115 322198 27 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_L1 468338 468457 20 - . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_RTE-BovB 220749 220874 28 - . . . . . -1 -1 -1 . . . scaffold43240 WUBlastX LINE_RTE-X 155158 155427 57 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_L1-Tx1 320887 321555 21 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_TcMar-Tc1 391465 391803 37 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold509 WUBlastX LINE_L2-Hydra 246749 247093 32 + . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_L2-Hydra 247370 247789 22 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX DNA_P 182222 182932 73 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LTR_Ngaro 122820 123074 107 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_RTE-X 646040 646378 51 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1-Tx1 421271 421528 82 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold241 WUBlastX LTR_Ngaro 299522 299608 45 - . . . . . -1 -1 -1 . . . scaffold35446 WUBlastX LTR_Gypsy 18267 18758 97 - . . scaffold35446 GLEAN mRNA 11417 21109 0.682042 + . ID=CGI_10001510; scaffold257 WUBlastX DNA_MuDR 1260575 1260805 65 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1-Tx1 860806 861294 63 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX LINE_L1-Tx1 141255 141602 92 + . . scaffold802 GLEAN mRNA 137512 196873 0.499283 - . ID=CGI_10015727; scaffold77 WUBlastX LINE_RTE-X 425489 425623 75 + . . . . . -1 -1 -1 . . . scaffold33518 WUBlastX DNA_TcMar-Tc1 2524 2787 70 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX DNA_TcMar-Tc1 398471 398638 47 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_L2 124323 124439 31 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 77710 78135 47 + . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_L2 147069 147287 45 + . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_L2 147352 147453 43 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_R2-Hero 82130 82312 76 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Gypsy 205638 205946 33 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 763569 763721 80 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_R2 235873 235935 22 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_TcMar-Tc1 102911 103144 21 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX DNA_TcMar-Tc1 694879 695112 21 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX LTR_Pao 80816 81166 27 + . . . . . -1 -1 -1 . . . scaffold37790 WUBlastX LINE_L1 44551 44631 52 - . . . . . -1 -1 -1 . . . scaffold467 WUBlastX LINE_L2 43831 44343 114 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 86330 87247 113 + . . . . . -1 -1 -1 . . . scaffold410 WUBlastX DNA_P 27993 28226 135 - . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX DNA_Kolobok 134147 134389 89 + . . scaffold1172 GLEAN mRNA 130831 145007 0.99998 + . ID=CGI_10006909; scaffold294 WUBlastX LINE_L1-Tx1 211150 211551 26 - . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_L1-Tx1 211574 211711 28 - . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX DNA_Sola 16409 16567 46 + . . . . . -1 -1 -1 . . . scaffold296 WUBlastX DNA_TcMar-Tc1 6308 6553 80 + . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX DNA_TcMar-Tc1 129506 129937 70 + . . . . . -1 -1 -1 . . . scaffold40006 WUBlastX DNA_TcMar-Tc1 8089 8451 83 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_TcMar-Tc1 393850 394212 83 - . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold33618 WUBlastX LINE_L2 11337 11525 136 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 25322 25495 44 + . . scaffold156 GLEAN mRNA 14763 25823 0.782343 + . ID=CGI_10026471; scaffold404 WUBlastX DNA_IS4EU 304570 304896 117 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_RTE-X 272784 273164 93 + . . . . . -1 -1 -1 . . . scaffold206 WUBlastX LINE_RTE-X 274841 275128 135 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 282827 283228 92 - . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LINE_RTE-X 10093 10527 64 - . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LINE_RTE-X 124508 124924 80 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_RTE-X 242842 243336 89 + . . . . . -1 -1 -1 . . . scaffold40254 WUBlastX LINE_RTE-X 49596 49907 72 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX LINE_RTE-X 173078 173311 24 + . . . . . -1 -1 -1 . . . scaffold32202 WUBlastX LINE_L2 10540 11040 103 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LINE_CR1 77993 78145 23 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_IS4EU 56840 57124 116 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_Kolobok-IS4 456293 456841 75 + . . . . . -1 -1 -1 . . . scaffold1394 WUBlastX LINE_L1-Tx1 49900 50694 100 + . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L1-Tx1 91360 91398 23 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LINE_Penelope 178525 178731 59 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LINE_Penelope 179740 179868 32 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_RTE-X 184643 185269 44 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold1518 WUBlastX LTR_DIRS 75961 76206 129 - . . scaffold1518 GLEAN mRNA 56557 76841 0.557715 + . ID=CGI_10017788; scaffold747 WUBlastX DNA_TcMar-Marin 185524 185844 129 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX DNA_TcMar-Marin 792532 792933 55 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX LTR_Gypsy 149001 149828 232 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold152 WUBlastX DNA_En-Spm 386201 386992 343 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 536940 539162 792 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_L2 16040 16423 97 + . . scaffold146 GLEAN mRNA 11178 24512 0.999234 + . ID=CGI_10024878; scaffold9 WUBlastX LTR_Ngaro 83473 83583 52 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX DNA_IS4EU 825441 825587 52 + . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 826121 826444 118 + . . scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold39758 WUBlastX DNA_Kolobok 22237 22599 122 + . . scaffold39758 GLEAN mRNA 21995 23195 0.741708 + . ID=CGI_10003537; scaffold1249 WUBlastX LINE_L1 248985 249143 42 - . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX LINE_L1 41102 41233 59 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold487 WUBlastX LINE_Proto2 9544 9783 51 - . . . . . -1 -1 -1 . . . scaffold42788 WUBlastX LINE_L1-Tx1 106343 106813 102 + . . scaffold42788 GLEAN mRNA 99407 151977 0.339426 + . ID=CGI_10007755; scaffold39096 WUBlastX LTR_Gypsy 38441 39208 403 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L2 150832 151377 69 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Ngaro 84747 85079 155 - . . scaffold1634 GLEAN mRNA 82464 85496 0.992943 + . ID=CGI_10005152; scaffold1113 WUBlastX LTR_Ngaro 46790 47026 180 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_hAT-hATw 134612 134977 66 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LINE_RTE-X 168006 168206 32 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Gypsy 112725 113618 486 + . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_RTE-X 283510 285465 968 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LINE_CR1 356977 357156 48 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Ngaro 475173 475385 51 + . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_RTE-X 110909 111241 25 - . . . . . -1 -1 -1 . . . scaffold722 WUBlastX LTR_Ngaro 303451 304107 109 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy-Cigr 488130 488621 186 + . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX DNA_Harbinger 92973 93449 153 + . . scaffold1493 GLEAN mRNA 68626 94456 0.99155 + . ID=CGI_10006742; scaffold681 WUBlastX LINE_L1-Tx1 341910 342041 67 + . . . . . -1 -1 -1 . . . scaffold432 WUBlastX DNA_TcMar-Tc1 325998 326663 67 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_RTE-X 173919 174215 81 - . . scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold1599 WUBlastX LINE_L1-Tx1 1321785 1322327 110 - . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LINE_L1-Tx1 267718 268383 102 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_CR1-L2 544420 544806 139 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; C17650 WUBlastX LTR_Gypsy 261 338 77 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 309013 309063 22 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX DNA_hAT-Tip100 63119 63508 132 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX DNA_hAT-Tip100 64168 64329 55 + . . . . . -1 -1 -1 . . . scaffold43366 WUBlastX DNA_IS4EU 86296 87033 172 - . . . . . -1 -1 -1 . . . scaffold1755 WUBlastX LINE_Penelope 30963 31214 32 - . . scaffold1755 GLEAN mRNA 30793 36083 1 + . ID=CGI_10002648; scaffold1755 WUBlastX LINE_Penelope 32274 32687 124 - . . scaffold1755 GLEAN mRNA 30793 36083 1 + . ID=CGI_10002648; C26620 WUBlastX DNA_PiggyBac 465 683 87 - . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 2097 2204 62 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 354276 354581 125 + . . . . . -1 -1 -1 . . . scaffold61 WUBlastX DNA_Academ 164016 164786 492 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX DNA_Academ 165152 165775 381 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold61 WUBlastX DNA_Academ 165771 166871 554 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold393 WUBlastX LTR_Gypsy 58715 60040 615 + . . . . . -1 -1 -1 . . . scaffold722 WUBlastX LINE_CR1-L2 299996 300298 113 + . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LINE_CR1 89687 90364 97 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 94523 94945 81 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold1849 WUBlastX DNA_TcMar-Tc1 140976 141275 181 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 6754 9327 1221 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy-Troyk 1102329 1103018 297 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX DNA_Maverick 70836 71288 110 - . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold41898 WUBlastX LTR_Gypsy 98395 98646 23 - . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold1619 WUBlastX LTR_Gypsy-Cigr 137523 138026 417 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 159663 162239 1672 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Gypsy 4132 6078 1702 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LTR_Gypsy 181508 181693 44 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 821346 821411 27 - . . scaffold204 GLEAN mRNA 815967 826283 0.552692 + . ID=CGI_10026134; scaffold204 WUBlastX LINE_L1-Tx1 821427 821726 26 - . . scaffold204 GLEAN mRNA 815967 826283 0.552692 + . ID=CGI_10026134; scaffold204 WUBlastX LINE_L1-Tx1 821955 822113 23 - . . scaffold204 GLEAN mRNA 815967 826283 0.552692 + . ID=CGI_10026134; scaffold204 WUBlastX LINE_L1-Tx1 822109 822399 69 - . . scaffold204 GLEAN mRNA 815967 826283 0.552692 + . ID=CGI_10026134; scaffold107 WUBlastX LTR_Gypsy-Cigr 747805 747957 47 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 168085 168393 153 - . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_Harbinger 137106 137285 85 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX DNA_Harbinger 30259 30396 63 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX DNA_Harbinger 30432 30533 79 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_RTE-X 165982 166209 48 + . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_L1-Tx1 3570 3725 31 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold143 WUBlastX LTR_Gypsy 19610 19759 66 - . . scaffold143 GLEAN mRNA 16958 23785 0.985197 + . ID=CGI_10010006; scaffold683 WUBlastX RC_Helitron 142221 142256 20 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1-Tx1 738227 738532 37 + . . . . . -1 -1 -1 . . . scaffold38638 WUBlastX LINE_Penelope 32481 32729 87 - . . . . . -1 -1 -1 . . . scaffold148 WUBlastX DNA_TcMar-Fot1 71994 72233 146 + . . . . . -1 -1 -1 . . . scaffold707 WUBlastX LTR_Gypsy 2598 2834 100 + . . . . . -1 -1 -1 . . . scaffold37064 WUBlastX LINE_Jockey 1637 1921 64 - . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_CR1 11152 11829 200 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 1029714 1030115 247 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_Ngaro 72864 73511 199 + . . scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; C30898 WUBlastX DNA_Crypton 1085 1810 165 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_hAT-hATw 350124 350750 116 + . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX DNA_Kolobok-IS4 62098 62529 22 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 8983 9801 157 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 50199 50873 109 - . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-X 439955 440599 208 - . . scaffold658 GLEAN mRNA 439916 440515 1 - . ID=CGI_10018975; scaffold1800 WUBlastX DNA_TcMar-Tc1 340421 341017 201 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L2 751591 752421 163 + . . . . . -1 -1 -1 . . . scaffold825 WUBlastX LTR_DIRS 101063 101536 64 - . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LINE_RTE-BovB 201761 202171 152 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX DNA_P 49990 51777 158 - . . scaffold41834 GLEAN mRNA 48075 59157 0.346565 + . ID=CGI_10005704; scaffold209 WUBlastX DNA_TcMar-Tc1 289239 289655 102 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 746019 746117 59 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 746333 746551 45 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 735028 735846 238 - . . . . . -1 -1 -1 . . . scaffold42866 WUBlastX LTR_Pao 5100 5678 286 - . . scaffold42866 GLEAN mRNA 4204 26490 0.99967 + . ID=CGI_10007989; scaffold43660 WUBlastX LTR_Gypsy 28 1548 1061 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX DNA_Kolobok 85458 85682 86 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-X 53160 53453 30 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 330696 331175 86 + . . scaffold1583 GLEAN mRNA 329253 340870 0.998703 - . ID=CGI_10025825; scaffold87 WUBlastX DNA_Sola 113338 113580 61 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_hAT-Tip100 1282679 1283434 154 + . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_Harbinger 137831 137971 51 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold1698 WUBlastX DNA_Harbinger 225666 225806 51 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-BovB 443925 444233 108 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX DNA_PiggyBac 1263383 1263733 199 - . . scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold210 WUBlastX LINE_RTE-X 141722 142165 143 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold1335 WUBlastX LINE_Penelope 12758 13204 141 - . . scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold1609 WUBlastX LINE_RTE-BovB 168174 169226 201 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 3046 3693 213 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 330600 330788 60 - . . . . . -1 -1 -1 . . . scaffold1318 WUBlastX DNA_P 119303 121036 209 - . . . . . -1 -1 -1 . . . scaffold42558 WUBlastX LINE_L1 125997 126167 70 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_RTE-BovB 683204 683470 47 - . . scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold964 WUBlastX LTR_Ngaro 149519 150463 174 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 82103 82888 198 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold601 WUBlastX LINE_CR1 1084691 1085428 223 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy 601987 602325 80 + . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-BovB 220335 220640 178 - . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LTR_Gypsy 15134 15850 221 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold226 WUBlastX LTR_Gypsy 921740 922456 221 + . . scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold1077 WUBlastX DNA_Maverick 506946 507377 203 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_L1-Tx1 594260 595474 161 - . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LTR_Gypsy 49398 49508 52 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 424567 424644 25 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1 163493 163690 36 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-X 1863 1991 42 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_RTE-X 119993 120208 32 - . . . . . -1 -1 -1 . . . scaffold34000 WUBlastX LINE_L2 6926 7864 266 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_DIRS 225425 226357 278 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Ngaro 412256 412690 200 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 234907 235344 259 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1-Tx1 868335 868511 116 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 89024 89170 31 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold27654 WUBlastX DNA_IS4EU 3685 4251 332 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Ngaro 411052 411507 169 + . . . . . -1 -1 -1 . . . C25486 WUBlastX LTR_Gypsy 6 221 54 - . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LTR_Gypsy 25220 25423 76 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold39598 WUBlastX LINE_L1-Tx1 11393 12664 31 - . . . . . -1 -1 -1 . . . scaffold39598 WUBlastX LINE_L1-Tx1 12670 13164 147 - . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX LTR_Pao 2837 3463 71 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1-Tx1 338332 338808 71 - . . . . . -1 -1 -1 . . . C28258 WUBlastX LINE_L1-Tx1 4181 5374 325 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_DIRS 519079 519135 25 + . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LTR_Gypsy 16019 16219 140 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Gypsy 125151 126143 520 - . . scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold1870 WUBlastX LINE_L2 6747 8303 422 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_CR1-L2 454463 454816 42 - . . . . . -1 -1 -1 . . . scaffold43208 WUBlastX LINE_RTE-X 135114 136430 341 - . . scaffold43208 GLEAN mRNA 124106 156003 0.962351 + . ID=CGI_10009358; scaffold1868 WUBlastX LTR_DIRS 154461 155411 471 + . . . . . -1 -1 -1 . . . C30458 WUBlastX LINE_L1-Tx1 6386 7870 312 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2 422973 423401 29 + . . . . . -1 -1 -1 . . . scaffold39352 WUBlastX LINE_RTE-X 57249 58025 27 - . . . . . -1 -1 -1 . . . scaffold39352 WUBlastX LINE_RTE-X 57946 59055 371 - . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX DNA_Zator 21326 21643 22 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_Gypsy 65550 66476 302 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold1583 WUBlastX LINE_L2 280435 281667 522 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_DIRS 558353 559111 235 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_RTE-X 442069 442620 145 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_CR1 344221 344754 423 + . . . . . -1 -1 -1 . . . scaffold38374 WUBlastX LTR_Gypsy 16215 17153 288 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold82 WUBlastX LTR_Pao 572049 572591 150 - . . . . . -1 -1 -1 . . . C34122 WUBlastX LTR_Gypsy 13639 13863 114 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_L1-Tx1 361959 362267 28 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold42894 WUBlastX LTR_DIRS 143344 143754 267 + . . . . . -1 -1 -1 . . . scaffold42894 WUBlastX LTR_DIRS 143727 144368 442 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy 68256 68564 206 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold1473 WUBlastX LINE_RTE-X 3075 3779 189 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 231140 232297 371 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1142364 1143059 253 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 301160 301330 186 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 846811 847566 229 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Pao 21301 21432 31 + . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Pao 21462 21593 57 + . . . . . -1 -1 -1 . . . scaffold36936 WUBlastX LTR_Pao 17384 17992 37 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold37788 WUBlastX LTR_Pao 544 690 74 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Pao 103198 103350 49 - . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX DNA_TcMar-Marin 111312 111560 64 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 9319 9405 35 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX DNA_Academ 259700 259966 45 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LINE_CR1-L2 18388 18624 54 + . . scaffold667 GLEAN mRNA 6729 22533 0.999844 - . ID=CGI_10005354; scaffold43954 WUBlastX LINE_CR1 146536 146661 39 + . . scaffold43954 GLEAN mRNA 139153 149832 0.999998 - . ID=CGI_10014576; scaffold962 WUBlastX LINE_L2 1258285 1258377 33 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_CR1 1269822 1269932 26 - . . scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold43676 WUBlastX LINE_L2 279758 279877 35 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_CR1-L2 483861 484181 40 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Gypsy-Cigr 437007 437276 77 + . . scaffold394 GLEAN mRNA 435520 450975 0.532272 + . ID=CGI_10022085; C30140 WUBlastX LTR_Gypsy 1794 2000 33 + . . C30140 GLEAN mRNA 1968 2204 0.618186 + . ID=CGI_10000597; scaffold191 WUBlastX LTR_Gypsy 95134 95367 32 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE 807459 807725 37 + . . scaffold419 GLEAN mRNA 806382 811629 0.999675 - . ID=CGI_10028368; C31096 WUBlastX LTR_DIRS 5782 6486 28 - . . C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; C31346 WUBlastX DNA_TcMar-Marin 4229 4753 21 + . . . . . -1 -1 -1 . . . scaffold43676 WUBlastX LINE_L2 279928 280107 39 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 371231 371521 62 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy 86125 86205 84 + . . scaffold1221 GLEAN mRNA 84840 95252 0.99967 - . ID=CGI_10019730; scaffold1732 WUBlastX DNA_IS4EU 34768 35010 72 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_hAT-Tip100 723627 723869 67 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold1633 WUBlastX DNA_hAT-Tip100 282497 282739 32 - . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX DNA_Kolobok-Hyd 72031 72432 27 - . . scaffold44054 GLEAN mRNA 71971 72414 0.999106 - . ID=CGI_10016156; scaffold1154 WUBlastX DNA_Kolobok-Hyd 65475 65912 36 + . . scaffold1154 GLEAN mRNA 65325 66512 0.77656 + . ID=CGI_10026149; scaffold1084 WUBlastX LINE_L1-Tx1 198208 198531 44 - . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_L1 156106 156438 56 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 944117 944452 49 + . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LTR_Ngaro 175957 176124 57 + . . scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; C27726 WUBlastX LTR_Ngaro 2731 2871 25 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_TcMar-Marin 564765 565154 37 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold432 WUBlastX DNA_TcMar-Marin 329634 329903 55 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_TcMar-Marin 209407 209643 77 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX DNA_TcMar-Marin 189603 189860 45 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_Penelope 279831 280037 47 - . . scaffold502 GLEAN mRNA 265921 292012 0.339102 + . ID=CGI_10024318; scaffold1336 WUBlastX LINE_Penelope 3881 4147 42 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 739604 739807 67 + . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_RTE-X 42327 42605 47 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 195552 195650 20 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 195647 195760 38 + . . . . . -1 -1 -1 . . . scaffold42508 WUBlastX LINE_RTE-X 149222 149401 26 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_PiggyBac 30009 30152 60 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_RTE-X 89287 89706 51 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_RTE-X 143820 143957 35 + . . scaffold377 GLEAN mRNA 140445 144953 0.80154 - . ID=CGI_10019404; scaffold1719 WUBlastX LINE_RTE-X 316460 316744 28 - . . scaffold1719 GLEAN mRNA 297152 319693 0.889105 - . ID=CGI_10014286; scaffold4 WUBlastX LINE_L1-Tx1 435651 435863 36 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold343 WUBlastX LINE_L1-Tx1 134848 135096 32 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_Jockey 340189 340230 22 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L2 36452 36607 34 + . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1 8933 9469 24 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_L1 23049 23585 24 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_MuDR 349866 350474 65 - . . scaffold719 GLEAN mRNA 350223 350417 0.481188 - . ID=CGI_10016007; scaffold808 WUBlastX DNA_Chapaev 377738 378118 30 - . . . . . -1 -1 -1 . . . scaffold808 WUBlastX DNA_Chapaev 378228 378965 28 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX DNA_Chapaev 33802 34539 28 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX DNA_Chapaev 34649 35029 30 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Ngaro 544267 544563 94 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LTR_Ngaro 301905 302177 59 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_hAT-Blackja 519936 520130 58 - . . scaffold58 GLEAN mRNA 517451 527850 1 - . ID=CGI_10023148; scaffold392 WUBlastX LTR_Gypsy 36015 36407 21 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold963 WUBlastX LTR_DIRS 162541 162678 24 - . . . . . -1 -1 -1 . . . scaffold322 WUBlastX DNA_P 201543 201704 24 + . . . . . -1 -1 -1 . . . scaffold1493 WUBlastX DNA_TcMar-Marin 33487 33711 67 + . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LINE_L1 80679 80969 40 + . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L1 272 505 42 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_L1 772886 773266 44 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX DNA_Kolobok 2817 3005 79 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_IS4EU 1761773 1761991 74 - . . scaffold1024 GLEAN mRNA 1751618 1765575 0.556405 - . ID=CGI_10028585; scaffold410 WUBlastX LINE_RTE-BovB 526647 526703 24 + . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LINE_RTE-X 139995 140246 62 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_RTE-X 275626 275700 37 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1-Tx1 412715 413023 68 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LTR_Gypsy-Troyk 198892 199104 71 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX DNA_hAT 1538666 1538815 55 - . . scaffold102 GLEAN mRNA 1532525 1541174 0.3501 - . ID=CGI_10028505; scaffold1589 WUBlastX DNA_PiggyBac 243433 243564 65 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L2 85595 85804 41 - . . scaffold149 GLEAN mRNA 83928 102929 0.964877 + . ID=CGI_10025289; scaffold42274 WUBlastX DNA_Harbinger 127618 127707 50 + . . . . . -1 -1 -1 . . . scaffold919 WUBlastX LTR_Gypsy 18356 18406 24 + . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LTR_Gypsy 14482 14775 73 + . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 57351 57578 107 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 147609 148277 68 + . . . . . -1 -1 -1 . . . scaffold38066 WUBlastX DNA_hAT-Tip100 10929 11147 55 - . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_IS4EU 26689 26925 83 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX DNA_Kolobok-Hyd 207816 207890 42 + . . scaffold853 GLEAN mRNA 204099 212863 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 207816 207890 42 + . . scaffold853 GLEAN mRNA 206619 210945 0.253956 + . ID=CGI_10017495; scaffold1016 WUBlastX LINE_L1 133715 133852 23 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_RTE-X 687396 687680 52 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_RTE-X 179906 180271 58 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 164650 164793 40 + . . scaffold1149 GLEAN mRNA 149088 177869 0.31262 + . ID=CGI_10023454; scaffold42402 WUBlastX LINE_RTE-X 129965 130099 39 + . . scaffold42402 GLEAN mRNA 124224 132825 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 129965 130099 39 + . . scaffold42402 GLEAN mRNA 127799 151962 1 + . ID=CGI_10006796; scaffold41928 WUBlastX DNA_Zator 35904 36134 58 + . . scaffold41928 GLEAN mRNA 28917 39705 0.734554 - . ID=CGI_10005836; scaffold86 WUBlastX LINE_L2 1436251 1436667 66 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L2 901317 901952 85 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_Ngaro 212906 213091 84 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Harbinger 171322 171432 54 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_IS4EU 217271 218221 37 - . . . . . -1 -1 -1 . . . scaffold40994 WUBlastX LINE_L1 101177 101710 21 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_Penelope 56210 56539 86 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_PiggyBac 66380 66574 40 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold1883 WUBlastX LINE_RTE-X 104650 105318 24 + . . . . . -1 -1 -1 . . . scaffold35726 WUBlastX DNA_TcMar-Marin 23718 23786 36 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_L1-Tx1 360740 360898 82 + . . . . . -1 -1 -1 . . . scaffold43134 WUBlastX LTR_DIRS 193917 194081 40 - . . . . . -1 -1 -1 . . . scaffold316 WUBlastX LTR_Gypsy 16599 16802 66 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold43954 WUBlastX DNA_MuDR 334260 334484 40 + . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX DNA_MuDR 334616 335029 41 + . . scaffold43954 GLEAN mRNA 334847 335729 0.999507 + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 335328 335387 22 + . . scaffold43954 GLEAN mRNA 334847 335729 0.999507 + . ID=CGI_10014586; scaffold43008 WUBlastX LINE_L2 2736 2888 44 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold1321 WUBlastX LINE_RTE-BovB 4259 4552 40 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Maverick 159737 160177 82 + . . . . . -1 -1 -1 . . . scaffold193 WUBlastX LINE_RTE-X 65311 65646 82 - . . scaffold193 GLEAN mRNA 59988 95620 0.99962 + . ID=CGI_10015222; scaffold1736 WUBlastX LINE_RTE-X 469951 470220 98 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_RTE-X 1675446 1675862 58 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_RTE-X 1033017 1033421 65 + . . scaffold1154 GLEAN mRNA 1031436 1038206 0.969571 + . ID=CGI_10026203; scaffold41164 WUBlastX LINE_RTE-X 86818 87024 84 + . . scaffold41164 GLEAN mRNA 83753 104051 0.95986 - . ID=CGI_10004764; scaffold41628 WUBlastX LTR_Copia 1066 2064 53 - . . . . . -1 -1 -1 . . . scaffold41162 WUBlastX LTR_ERV1 90198 90443 27 - . . scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold38306 WUBlastX LINE_L1-Tx1 7256 7615 86 + . . scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold1417 WUBlastX LINE_RTE-X 38410 38700 65 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Pao 94669 94944 136 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LTR_Pao 19413 19496 27 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold572 WUBlastX LTR_Gypsy 23560 23841 57 + . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LTR_Ngaro 27906 28043 42 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_IS4EU 55928 55972 26 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_NOF? 207861 208241 41 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LINE_RTE-X 507834 508232 25 + . . . . . -1 -1 -1 . . . C27882 WUBlastX LINE_RTE-X 2520 2813 41 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LINE_L1-Tx1 188969 189175 72 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Ngaro 299028 299453 79 + . . scaffold298 GLEAN mRNA 297759 312412 0.999402 - . ID=CGI_10018824; scaffold150 WUBlastX LINE_L1-Tx1 186792 187115 43 + . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_Kolobok 18663 18872 78 - . . scaffold1782 GLEAN mRNA 7792 19893 0.99249 - . ID=CGI_10004240; scaffold419 WUBlastX LTR_ERV1 495984 496160 54 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX DNA_MuDR 508528 508797 111 - . . . . . -1 -1 -1 . . . scaffold617 WUBlastX DNA_Maverick 3074 3145 55 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX DNA_TcMar-Tc1 73152 73550 50 + . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_CR1-L2 539476 539889 110 - . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX LINE_L2 86798 87490 103 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX RC_Helitron 183181 183504 148 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_TcMar-Marin 424318 424497 79 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_Penelope 392447 392698 123 - . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LINE_Penelope 9009 9509 50 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_TcMar-Marin 209739 210272 121 + . . scaffold72 GLEAN mRNA 207105 213716 0.998726 - . ID=CGI_10017841; scaffold43782 WUBlastX LINE_L1-Tx1 164090 164491 129 - . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L1-Tx1 165029 165391 66 - . . scaffold348 GLEAN mRNA 160739 182763 0.583298 + . ID=CGI_10022972; scaffold40836 WUBlastX LINE_L2 87262 87483 59 - . . scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold448 WUBlastX LTR_Ngaro 184089 184265 147 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 429200 429448 73 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 429466 429852 68 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Harbinger 27318 27443 58 + . . . . . -1 -1 -1 . . . scaffold750 WUBlastX DNA_TcMar-Tc1 239362 239595 21 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 87356 87736 71 + . . . . . -1 -1 -1 . . . scaffold1475 WUBlastX LINE_RTE-X 91739 92239 64 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LINE_CR1-L2 505917 506606 99 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_Academ 445715 445873 22 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LTR_DIRS 50640 51080 90 - . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX RC_Helitron 1703 1864 103 + . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX DNA_IS4EU 178903 179430 177 - . . scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold1084 WUBlastX LTR_DIRS 152095 153762 1009 + . . scaffold1084 GLEAN mRNA 143113 160475 0.702333 + . ID=CGI_10010078; scaffold41248 WUBlastX LTR_Ngaro 16516 18117 1029 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 484701 485957 263 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 491423 492679 263 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_CR1 27660 27767 81 + . . . . . -1 -1 -1 . . . C30752 WUBlastX LINE_L2 3039 3443 101 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1 88747 88845 22 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold1209 WUBlastX LINE_L1-Tx1 36597 36995 109 - . . . . . -1 -1 -1 . . . scaffold1057 WUBlastX LINE_L1-Tx1 2 631 108 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L1-Tx1 321317 322333 77 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L1-Tx1 14217 15434 437 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L1-Tx1 15368 15562 74 - . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX LTR_Gypsy-Cigr 94174 94428 72 - . . . . . -1 -1 -1 . . . C34948 WUBlastX LINE_RTE-X 3123 3875 412 + . . . . . -1 -1 -1 . . . scaffold42030 WUBlastX LINE_RTE-X 77289 78563 223 + . . scaffold42030 GLEAN mRNA 73599 103190 0.98897 + . ID=CGI_10006046; scaffold422 WUBlastX LTR_Pao 550518 551771 724 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 48901 49317 49 + . . . . . -1 -1 -1 . . . scaffold1725 WUBlastX LINE_Penelope 60977 61555 114 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_TcMar-Tc1 2770 2988 80 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L2 285771 285986 107 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold43818 WUBlastX LINE_CR1-L2 74983 75603 95 + . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LTR_Gypsy 557062 557181 44 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold1397 WUBlastX DNA_TcMar-Fot1 274037 274375 100 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_TcMar-Fot1 274407 274943 64 + . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LTR_Ngaro 181555 182163 125 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-X 165587 165745 42 + . . scaffold980 GLEAN mRNA 163810 172327 0.499535 - . ID=CGI_10019213; C33244 WUBlastX LINE_L2 4684 5709 36 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_Kolobok-IS4 562477 563040 123 - . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_L1-Tx1 76494 76724 84 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold41568 WUBlastX LINE_RTE-X 37660 39114 764 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LINE_L1-Tx1 89844 89966 45 - . . . . . -1 -1 -1 . . . C31846 WUBlastX LINE_L1-Tx1 17 151 28 - . . . . . -1 -1 -1 . . . C31846 WUBlastX LINE_L1-Tx1 142 663 79 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_CR1 516130 517539 852 + . . scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold1054 WUBlastX LTR_DIRS 24359 25057 195 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_ERVL 108064 108387 37 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L1-Tx1 790953 791144 25 - . . scaffold1188 GLEAN mRNA 787973 796993 0.991964 + . ID=CGI_10025502; scaffold1188 WUBlastX LINE_L1-Tx1 791148 791237 31 - . . scaffold1188 GLEAN mRNA 787973 796993 0.991964 + . ID=CGI_10025502; scaffold919 WUBlastX LINE_R2 66682 67128 241 + . . . . . -1 -1 -1 . . . scaffold951 WUBlastX LINE_RTE-X 166131 166583 76 + . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_RTE-X 300627 300791 35 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 746476 746970 58 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 747036 747248 68 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LINE_CR1-L2 636737 637120 51 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LTR_Gypsy 140084 140251 122 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_Harbinger 256951 257022 22 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_Harbinger 257332 257448 59 - . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_Harbinger 257571 257996 115 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok 955650 955937 129 + . . . . . -1 -1 -1 . . . scaffold36170 WUBlastX LTR_Gypsy 14343 14594 134 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_DIRS 202686 203228 162 - . . . . . -1 -1 -1 . . . C34948 WUBlastX LINE_Jockey 2862 3875 83 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LTR_Gypsy 272674 273447 85 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_IS4EU 194376 195191 80 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1 336628 337044 126 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_L1 1986 2066 23 + . . . . . -1 -1 -1 . . . scaffold1847 WUBlastX LTR_DIRS 50808 51317 125 + . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1 325630 325944 94 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 155861 156121 117 - . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_hAT-Tip100 122832 123182 107 - . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_hAT-Tip100 123740 124354 109 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 261 518 24 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Ngaro 551 1057 182 + . . . . . -1 -1 -1 . . . C29968 WUBlastX LINE_Proto2 1901 2227 60 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Ngaro 340278 341147 255 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_L1 295298 295639 195 + . . . . . -1 -1 -1 . . . C32728 WUBlastX DNA_Sola 3876 4073 151 + . . . . . -1 -1 -1 . . . scaffold36758 WUBlastX LINE_CR1 10308 13523 2066 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX DNA_hAT-Tip100 266872 267192 60 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX DNA_hAT-Tip100 267165 267584 149 - . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX DNA_hAT-Tip100 267560 267823 83 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 224452 224961 84 - . . . . . -1 -1 -1 . . . C26240 WUBlastX LINE_L1-Tx1 18 1178 230 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_RTE-X 104464 104958 254 + . . . . . -1 -1 -1 . . . scaffold1252 WUBlastX LINE_RTE-X 341848 342546 212 - . . scaffold1252 GLEAN mRNA 294568 343049 0.93602 - . ID=CGI_10013124; scaffold41988 WUBlastX DNA_PiggyBac 97016 97171 48 + . . . . . -1 -1 -1 . . . scaffold41988 WUBlastX DNA_PiggyBac 97604 97795 114 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_DIRS 809119 809685 135 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 314721 315143 275 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LTR_Ngaro 85507 85866 120 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LTR_Gypsy 294839 295372 87 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 87495 88199 224 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold647 WUBlastX DNA_TcMar-Tc1 11124 11858 223 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_RTE-X 33300 33554 32 + . . . . . -1 -1 -1 . . . scaffold752 WUBlastX LINE_RTE-X 45480 46307 194 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_RTE-X 294734 295375 147 + . . . . . -1 -1 -1 . . . scaffold1740 WUBlastX DNA_TcMar-Tc1 257519 257974 235 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LTR_Pao 73454 74320 128 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LTR_Pao 74326 75066 91 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 323298 324023 292 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LINE_L1 935532 935825 35 - . . . . . -1 -1 -1 . . . scaffold1400 WUBlastX LINE_RTE-X 2177 2812 142 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 16719 16994 55 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_RTE-X 91091 91372 91 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold61 WUBlastX LINE_RTE-X 92046 92312 115 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold544 WUBlastX LINE_L1 210878 211090 45 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold38990 WUBlastX LINE_RTE-X 60849 61955 257 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Harbinger 414185 414403 49 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold1688 WUBlastX LTR_Gypsy 72531 73370 67 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LINE_RTE-X 133159 134358 293 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 22967 23140 58 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold42674 WUBlastX LINE_RTE-X 172558 173247 266 - . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold1054 WUBlastX DNA_Kolobok 331129 331824 209 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold40440 WUBlastX LINE_Penelope 53023 54330 262 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LINE_Penelope 54413 54550 28 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold288 WUBlastX DNA_TcMar-Tc1 159565 159654 25 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold1189 WUBlastX LINE_RTE-BovB 656130 656429 48 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 36998 37816 428 - . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L1-Tx1 4267 5295 294 - . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX LTR_Pao 129667 129792 69 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LTR_Ngaro 112231 112899 341 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX LTR_Gypsy 451 1038 217 + . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LINE_RTE-X 234076 234897 300 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 477814 478011 59 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX DNA_Merlin 189951 190844 346 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Maverick 257506 258114 426 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 298780 299661 388 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Ngaro 252353 253234 388 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LTR_Ngaro 340320 341201 388 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX DNA_TcMar-Tc1 654810 655823 386 - . . scaffold347 GLEAN mRNA 648161 659682 0.997772 - . ID=CGI_10021805; scaffold35438 WUBlastX LINE_L1 10403 11299 322 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold1605 WUBlastX LINE_L1-Tx1 456014 456463 257 - . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX LINE_L1-Tx1 456457 456717 139 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 361969 362220 87 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1-Tx1 1004169 1005314 349 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1-Tx1 162144 162293 33 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_DIRS 57417 57725 64 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 225461 225634 117 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 225624 225968 247 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 226066 226230 115 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_TcMar-Tc1 216845 217201 170 - . . . . . -1 -1 -1 . . . C28286 WUBlastX DNA_TcMar-Tc1 2413 2805 236 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LINE_L1-Tx1 251537 252685 413 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_DIRS 547701 549026 376 + . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 65698 65796 28 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LINE_Penelope 59260 59949 373 + . . scaffold705 GLEAN mRNA 54891 78972 0.408277 - . ID=CGI_10015497; scaffold531 WUBlastX LTR_Gypsy 331485 331994 202 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX LINE_RTE-X 193704 194942 204 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 316137 316325 83 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LINE_Penelope 28090 30282 324 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LINE_Penelope 30548 30778 33 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Ngaro 465186 465404 107 + . . . . . -1 -1 -1 . . . scaffold564 WUBlastX LINE_CR1-L2 223419 223871 187 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX LTR_DIRS 33878 34783 551 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Gypsy 113479 115356 495 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 94020 95192 313 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_L1-Tx1 428984 429508 65 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Maverick 401596 402024 258 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_hAT 495770 496030 135 + . . scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold481 WUBlastX LTR_Gypsy-Cigr 960464 961513 318 - . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Ngaro 9203 9424 77 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Ngaro 46087 47055 359 - . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX LINE_RTE-X 76443 77924 570 + . . scaffold1888 GLEAN mRNA 63277 86416 0.994729 - . ID=CGI_10013295; scaffold1301 WUBlastX LTR_Pao 1041190 1041618 319 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1041629 1042045 169 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 1042011 1042268 48 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Gypsy 748122 750347 499 - . . . . . -1 -1 -1 . . . scaffold37426 WUBlastX LTR_DIRS 5843 7576 618 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Pao 313244 314209 771 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Ngaro 158732 159793 413 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Ngaro 159754 160332 274 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX LINE_RTE-X 103928 104506 350 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold454 WUBlastX LINE_L2 97785 98726 230 - . . scaffold454 GLEAN mRNA 93341 108889 0.996665 - . ID=CGI_10011629; scaffold601 WUBlastX LTR_Gypsy 443953 444669 554 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 82072 82959 590 - . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LINE_CR1 38605 38967 152 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_RTE-X 253535 255220 759 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_L1-Tx1 360328 361449 246 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold38848 WUBlastX LINE_CR1-L2 29021 29236 47 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LINE_CR1 284478 284585 29 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_L2 750584 750814 61 + . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_L2 146684 146878 34 + . . . . . -1 -1 -1 . . . scaffold24 WUBlastX LINE_L2 107 505 23 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_L2 481426 481866 20 - . . . . . -1 -1 -1 . . . scaffold1590 WUBlastX LTR_Copia 70416 70832 28 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 268714 269463 41 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LINE_L2 145125 145295 26 - . . scaffold1769 GLEAN mRNA 144291 189811 0.937759 - . ID=CGI_10009242; scaffold1098 WUBlastX LINE_L2 47544 48014 48 + . . . . . -1 -1 -1 . . . scaffold1277 WUBlastX LTR_Ngaro 99632 99706 27 - . . . . . -1 -1 -1 . . . scaffold1734 WUBlastX LTR_DIRS 224136 224303 49 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-BovB 321655 321747 46 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LINE_RTE-BovB 177718 177825 47 - . . scaffold772 GLEAN mRNA 173305 179319 1 + . ID=CGI_10016584; scaffold43818 WUBlastX LTR_ERV1 251852 252574 48 + . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LTR_Gypsy 165199 165474 50 + . . . . . -1 -1 -1 . . . scaffold258 WUBlastX LTR_Gypsy-Cigr 617241 617354 28 + . . . . . -1 -1 -1 . . . scaffold1827 WUBlastX LTR_Gypsy 51037 51237 83 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Gypsy 456390 456971 63 + . . scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold71 WUBlastX DNA_Harbinger 181306 181533 39 - . . . . . -1 -1 -1 . . . scaffold38900 WUBlastX DNA_Harbinger 1438 1596 66 - . . . . . -1 -1 -1 . . . scaffold38900 WUBlastX DNA_Harbinger 21619 21777 66 - . . scaffold38900 GLEAN mRNA 4144 21771 0.999939 - . ID=CGI_10003039; scaffold33724 WUBlastX DNA_Harbinger 13745 13903 66 + . . scaffold33724 GLEAN mRNA 1518 14940 0.969602 + . ID=CGI_10001124; scaffold841 WUBlastX DNA_IS4EU 24800 25102 37 + . . . . . -1 -1 -1 . . . scaffold43562 WUBlastX DNA_TcMar-Marin 168065 168163 20 + . . scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Marin 168065 168163 20 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold767 WUBlastX DNA_IS4EU 133249 133602 45 + . . . . . -1 -1 -1 . . . scaffold41786 WUBlastX DNA_IS4EU 68998 69294 63 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX DNA_IS4EU 65704 65877 67 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX DNA_IS4EU 602859 603113 55 - . . . . . -1 -1 -1 . . . scaffold1584 WUBlastX RC_Helitron 343016 343291 79 - . . scaffold1584 GLEAN mRNA 342917 343357 0.69447 - . ID=CGI_10015089; scaffold102 WUBlastX DNA_TcMar-Tc2 257623 257802 48 - . . scaffold102 GLEAN mRNA 251987 267295 0.910885 - . ID=CGI_10028430; scaffold751 WUBlastX DNA_TcMar-Marin 229112 229351 57 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX DNA_TcMar-Marin 485614 485769 32 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX DNA_TcMar-Tc1 13513 13758 30 - . . . . . -1 -1 -1 . . . scaffold42372 WUBlastX DNA_TcMar-Tc1 72398 72751 40 - . . . . . -1 -1 -1 . . . scaffold1379 WUBlastX LTR_Ngaro 3585 3800 49 + . . . . . -1 -1 -1 . . . C29540 WUBlastX DNA_TcMar-Marin 5507 5674 57 + . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_L1 440313 440357 20 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_L1 69281 69337 20 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_ERV1 606986 607249 73 - . . . . . -1 -1 -1 . . . C28592 WUBlastX DNA_Kolobok-Hyd 2199 2411 46 + . . C28592 GLEAN mRNA 2193 2492 1 + . ID=CGI_10000444; scaffold41982 WUBlastX LINE_L1 44179 44262 27 + . . . . . -1 -1 -1 . . . scaffold547 WUBlastX LINE_RTE-X 538894 539034 54 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 158411 158482 20 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Maverick 158501 158644 52 - . . . . . -1 -1 -1 . . . scaffold352 WUBlastX DNA_PiggyBac 310119 310352 35 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold1885 WUBlastX DNA_PiggyBac 203859 204434 68 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_RTE-X 400762 400854 27 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LINE_RTE-X 241049 241207 40 - . . scaffold94 GLEAN mRNA 239838 248171 0.915918 + . ID=CGI_10013919; scaffold40182 WUBlastX LINE_RTE-X 18753 18830 57 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold453 WUBlastX LINE_RTE-X 215534 215887 34 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-X 868493 868648 48 - . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX LINE_RTE-X 231416 231559 71 - . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX LINE_RTE-X 231763 231831 21 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LINE_L1 101593 101916 23 - . . . . . -1 -1 -1 . . . scaffold38272 WUBlastX LTR_Gypsy 12145 12726 27 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold1865 WUBlastX LTR_Copia 86815 86874 22 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1-Tx1 321773 321931 80 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy-Cigr 548351 548677 37 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LTR_DIRS 70403 70741 96 + . . scaffold552 GLEAN mRNA 69612 73670 0.367121 + . ID=CGI_10009321; scaffold987 WUBlastX LINE_CR1-L2 80403 80573 81 + . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold967 WUBlastX LTR_Gypsy 144233 144466 89 - . . scaffold967 GLEAN mRNA 143924 144238 0.999304 - . ID=CGI_10015456; scaffold1138 WUBlastX LTR_Gypsy 174337 174477 34 + . . scaffold1138 GLEAN mRNA 174466 179423 0.789389 + . ID=CGI_10015372; scaffold43136 WUBlastX LTR_Gypsy 7880 8155 44 + . . . . . -1 -1 -1 . . . scaffold262 WUBlastX LTR_Gypsy 18598 18807 87 + . . . . . -1 -1 -1 . . . scaffold38780 WUBlastX LTR_Gypsy 13376 13555 34 + . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold87 WUBlastX LINE_L2 49801 50151 63 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX RC_Helitron 645546 646046 82 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_IS4EU 714695 714838 51 - . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold43072 WUBlastX LINE_L1 190913 191401 20 - . . scaffold43072 GLEAN mRNA 190073 191902 0.999933 - . ID=CGI_10008706; scaffold42032 WUBlastX DNA_IS4EU 139218 139478 88 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 153952 154158 22 + . . . . . -1 -1 -1 . . . scaffold868 WUBlastX LINE_Penelope 114629 114829 57 - . . . . . -1 -1 -1 . . . scaffold37680 WUBlastX DNA_TcMar-Marin 19020 19112 72 + . . . . . -1 -1 -1 . . . scaffold42598 WUBlastX LINE_RTE-BovB 161588 161749 73 + . . . . . -1 -1 -1 . . . scaffold1641 WUBlastX LTR_Gypsy-Cigr 232601 233170 83 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy-Cigr 656347 657090 68 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy-Cigr 800403 800801 88 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX DNA_IS4EU 41263 41796 52 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LINE_Penelope 209608 209781 33 - . . scaffold517 GLEAN mRNA 207961 216861 0.317127 - . ID=CGI_10008985; scaffold517 WUBlastX LINE_Penelope 209768 210058 38 - . . scaffold517 GLEAN mRNA 207961 216861 0.317127 - . ID=CGI_10008985; scaffold459 WUBlastX DNA_TcMar-Marin 132427 132531 36 - . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; C34634 WUBlastX LINE_RTE-X 1915 2034 41 - . . . . . -1 -1 -1 . . . scaffold251 WUBlastX DNA_TcMar-Tc1 106338 106679 81 - . . scaffold251 GLEAN mRNA 105906 108952 0.904704 - . ID=CGI_10005222; scaffold79 WUBlastX DNA_TcMar-Tc1 261611 262045 47 - . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold257 WUBlastX DNA_TcMar-Tc2 481157 481624 84 - . . . . . -1 -1 -1 . . . scaffold39464 WUBlastX LINE_L2 26322 27260 70 + . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX LINE_CR1-L2 199331 199378 40 - . . . . . -1 -1 -1 . . . scaffold42584 WUBlastX DNA_Crypton 95483 95896 87 - . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold471 WUBlastX LTR_Gypsy 719782 720153 85 - . . . . . -1 -1 -1 . . . scaffold1639 WUBlastX DNA_IS4EU 83460 83885 86 - . . scaffold1639 GLEAN mRNA 82644 83780 1 - . ID=CGI_10005439; scaffold1639 WUBlastX DNA_IS4EU 83460 83885 86 - . . scaffold1639 GLEAN mRNA 83815 84948 1 - . ID=CGI_10005440; scaffold446 WUBlastX DNA_Kolobok 187104 187343 103 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_TcMar-Fot1 54570 54806 90 - . . scaffold681 GLEAN mRNA 51586 54604 0.96497 + . ID=CGI_10014720; scaffold43648 WUBlastX DNA_Kolobok 235511 235732 56 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; C23682 WUBlastX LINE_L1-Tx1 2087 2209 32 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1 373430 373948 21 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L1 384259 384777 21 - . . . . . -1 -1 -1 . . . scaffold44 WUBlastX LINE_L1 215764 216282 21 - . . . . . -1 -1 -1 . . . C26070 WUBlastX LINE_RTE-X 112 447 51 + . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_RTE-X 560840 561133 44 - . . . . . -1 -1 -1 . . . scaffold40186 WUBlastX LINE_RTE-BovB 22401 23225 56 + . . scaffold40186 GLEAN mRNA 18331 26539 0.486093 - . ID=CGI_10003927; scaffold274 WUBlastX LINE_RTE-X 24796 25029 53 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LINE_RTE-X 820429 820692 91 + . . . . . -1 -1 -1 . . . C29388 WUBlastX LINE_RTE-X 5015 5521 86 + . . C29388 GLEAN mRNA 1255 5572 0.998536 + . ID=CGI_10000526; scaffold560 WUBlastX LINE_RTE-X 139743 139967 84 - . . scaffold560 GLEAN mRNA 134675 160538 0.941337 + . ID=CGI_10008753; scaffold1131 WUBlastX LINE_L1-Tx1 342116 342469 24 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_L2 721787 722146 96 + . . scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold964 WUBlastX LTR_Gypsy 52931 53086 23 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Penelope 996033 996368 34 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX DNA_Harbinger 39727 39870 64 - . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_L1-Tx1 135317 135532 25 + . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L2 11363 11653 94 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_L2 595516 595905 84 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Ngaro 98603 99019 42 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Gypsy 12757 13110 96 + . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_Harbinger 82350 83006 108 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_Penelope 143065 143682 69 - . . scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold1703 WUBlastX LINE_L2 325967 326269 67 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_L2 327092 327229 56 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_CR1 81552 82067 87 + . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold487 WUBlastX LINE_CR1-L2 8535 8831 38 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_L2 434000 434179 57 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Ngaro 337486 338019 99 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Ngaro 40870 41190 134 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 101706 102380 85 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX DNA_hAT-Ac 447503 447877 123 - . . . . . -1 -1 -1 . . . scaffold35438 WUBlastX DNA_MuDR 14851 15249 47 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold1811 WUBlastX LINE_RTE-X 99691 99780 47 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_RTE-X 173633 173695 49 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_LOA 138861 138923 23 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_DIRS 146545 146820 62 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LTR_DIRS 146850 147083 50 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 468171 468371 62 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX DNA_hAT-Ac 130651 130800 25 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_Harbinger 85922 86209 45 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_RTE-X 173721 174260 65 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LTR_DIRS 376395 376604 34 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Sola 379696 379815 28 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Ngaro 31934 32110 41 - . . . . . -1 -1 -1 . . . scaffold75 WUBlastX LTR_Pao 66961 67545 113 - . . scaffold75 GLEAN mRNA 46839 68019 0.92374 - . ID=CGI_10005790; C9353 WUBlastX LTR_Gypsy 2 148 139 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX DNA_Kolobok-IS4 335934 336293 108 - . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX LINE_Penelope 296521 297084 89 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold31816 WUBlastX DNA_TcMar-Tc1 10087 10191 77 + . . . . . -1 -1 -1 . . . C26624 WUBlastX LINE_L1-Tx1 2102 2323 154 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX LINE_L1-Tx1 126640 126822 50 + . . . . . -1 -1 -1 . . . scaffold353 WUBlastX LTR_Gypsy 426 716 155 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 57434 57772 98 - . . scaffold681 GLEAN mRNA 56607 61222 0.999967 + . ID=CGI_10014721; scaffold61 WUBlastX LINE_RTE-X 35172 35930 72 + . . . . . -1 -1 -1 . . . C33496 WUBlastX LINE_RTE-X 502 1140 83 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LINE_RTE-BovB 440808 440891 27 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-X 647888 648232 116 - . . . . . -1 -1 -1 . . . scaffold609 WUBlastX LINE_RTE-X 186076 186438 102 - . . scaffold609 GLEAN mRNA 183215 213482 0.840088 + . ID=CGI_10010464; scaffold1528 WUBlastX LINE_RTE-X 234929 235393 114 - . . . . . -1 -1 -1 . . . scaffold1726 WUBlastX LINE_L1-Tx1 77799 78230 79 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LINE_RTE-X 448189 448626 45 - . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold392 WUBlastX LINE_RTE-X 448661 450142 657 - . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold32546 WUBlastX LINE_L1-Tx1 4848 5438 45 - . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_L2 164854 165231 162 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold138 WUBlastX LINE_L2 164292 164621 100 - . . scaffold138 GLEAN mRNA 160827 167097 0.989024 - . ID=CGI_10008431; scaffold1199 WUBlastX DNA_En-Spm 103906 104253 122 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1 700643 700768 56 + . . . . . -1 -1 -1 . . . scaffold1639 WUBlastX DNA_Kolobok-Hyd 73342 74184 65 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX DNA_TcMar-Tc1 568791 569579 61 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_L1-Tx1 80933 81091 22 - . . scaffold828 GLEAN mRNA 78778 92221 0.986584 - . ID=CGI_10007365; scaffold184 WUBlastX LINE_L1-Tx1 324361 325152 151 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 227896 228555 94 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 183433 183672 179 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 180299 180589 20 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1 156623 156763 21 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_RTE-X 90227 90547 99 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Maverick 358508 358693 69 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Maverick 359002 359070 22 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX DNA_Maverick 410999 411088 35 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX DNA_Maverick 411292 411810 103 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1342660 1343004 30 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Ngaro 1343007 1343219 104 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_L1-Tx1 163059 163772 48 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L1-Tx1 273835 276741 777 + . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LTR_Ngaro 97930 99558 997 + . . scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; scaffold1018 WUBlastX LTR_Ngaro 221638 223239 1016 - . . . . . -1 -1 -1 . . . C29558 WUBlastX LTR_Gypsy 5151 5816 430 - . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LTR_Gypsy 219109 219609 333 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LTR_Gypsy 219917 222208 582 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LTR_Gypsy 222225 222530 32 + . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX DNA_TcMar-Pogo 3957 4331 96 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX DNA_PiggyBac 967013 967144 26 + . . . . . -1 -1 -1 . . . scaffold42556 WUBlastX LINE_RTE-X 30446 31096 127 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 244072 246645 1135 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 40206 40565 103 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_CR1 311251 311829 41 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold286 WUBlastX LINE_L2 103377 103868 69 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold382 WUBlastX DNA_Kolobok-IS4 42817 43407 154 - . . scaffold382 GLEAN mRNA 40511 73048 0.0752347 + . ID=CGI_10004503; scaffold198 WUBlastX DNA_MuDR 651480 652709 155 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_Penelope 328143 328268 49 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold756 WUBlastX LTR_Gypsy 249028 249597 210 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L2-Hydra 448573 449796 27 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LTR_Pao 49029 49292 180 + . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX DNA_Harbinger 17428 17895 153 + . . . . . -1 -1 -1 . . . scaffold441 WUBlastX DNA_Kolobok-IS4 49690 50712 89 - . . . . . -1 -1 -1 . . . scaffold40196 WUBlastX DNA_TcMar-Marin 4161 4544 104 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 1403603 1404013 43 - . . scaffold1009 GLEAN mRNA 1385958 1409839 0.363333 + . ID=CGI_10028796; scaffold335 WUBlastX LTR_Gypsy 127781 127990 45 - . . . . . -1 -1 -1 . . . scaffold309 WUBlastX LINE_L1-Tx1 173449 173634 26 - . . . . . -1 -1 -1 . . . scaffold38576 WUBlastX LINE_L2 25565 25870 48 + . . . . . -1 -1 -1 . . . scaffold1474 WUBlastX LTR_Ngaro 8725 8856 51 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Ngaro 62422 63141 129 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Harbinger 303477 303785 178 + . . . . . -1 -1 -1 . . . scaffold849 WUBlastX DNA_Harbinger 8509 8988 193 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 23969 24364 147 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 173841 174536 95 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 90808 92154 771 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LTR_Pao 93867 94208 33 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Pao 195716 196135 165 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Pao 196153 198069 1000 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 677427 678710 961 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 678849 679157 254 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 679096 679779 235 - . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold828 WUBlastX DNA_Harbinger 129545 130027 155 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LTR_Gypsy 125768 126427 184 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 589575 590333 82 - . . . . . -1 -1 -1 . . . scaffold1217 WUBlastX LTR_Gypsy 71863 72300 233 + . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_IS4EU 58957 59064 33 + . . scaffold525 GLEAN mRNA 58067 60404 0.665804 + . ID=CGI_10008573; scaffold443 WUBlastX LINE_Penelope 474687 475184 172 + . . . . . -1 -1 -1 . . . scaffold39598 WUBlastX LINE_L1-Tx1 12074 12661 77 - . . . . . -1 -1 -1 . . . C21510 WUBlastX LTR_Gypsy 11 1447 1822 + . . . . . -1 -1 -1 . . . scaffold894 WUBlastX DNA_hAT-Tip100 152465 153283 198 - . . scaffold894 GLEAN mRNA 150089 157261 0.544755 - . ID=CGI_10008547; scaffold488 WUBlastX LTR_Pao 85346 85801 47 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L1-Tx1 253217 253645 48 - . . scaffold113 GLEAN mRNA 246298 256285 1 - . ID=CGI_10021289; scaffold203 WUBlastX LINE_RTE-X 628979 629326 104 - . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold258 WUBlastX LINE_CR1 318282 318710 263 + . . scaffold258 GLEAN mRNA 316614 320715 1 + . ID=CGI_10020057; scaffold858 WUBlastX LINE_L2 17344 17397 24 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold142 WUBlastX DNA_NOF? 982754 983443 118 + . . scaffold142 GLEAN mRNA 963818 985587 0.999623 - . ID=CGI_10026782; scaffold374 WUBlastX DNA_hAT-Tip100 167048 167818 142 - . . scaffold374 GLEAN mRNA 164183 170659 0.970084 - . ID=CGI_10018719; scaffold847 WUBlastX LTR_Gypsy 597710 598033 266 - . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold1647 WUBlastX LTR_Gypsy 100590 100685 34 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_Telomeric 458288 458536 51 - . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1328 WUBlastX LTR_Gypsy 47208 47483 96 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_DIRS 1118058 1118363 100 + . . . . . -1 -1 -1 . . . scaffold661 WUBlastX LINE_L1 29645 29713 28 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1-Tx1 335837 336394 104 + . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-BovB 18483 18848 119 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_L1-Tx1 149678 149980 128 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_L1-Tx1 150751 150873 52 + . . . . . -1 -1 -1 . . . C35840 WUBlastX DNA_Harbinger 709 846 28 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; scaffold184 WUBlastX LINE_Penelope 160590 161024 303 - . . scaffold184 GLEAN mRNA 157859 165368 0.999999 - . ID=CGI_10014796; scaffold1532 WUBlastX LTR_Ngaro 641498 641788 124 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; C34120 WUBlastX DNA_Maverick 5467 5829 49 + . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_Maverick 6000 6242 51 + . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_Maverick 6254 6565 154 + . . . . . -1 -1 -1 . . . C34120 WUBlastX DNA_Maverick 6638 6781 47 + . . . . . -1 -1 -1 . . . scaffold33610 WUBlastX LTR_Gypsy 13362 13493 24 - . . . . . -1 -1 -1 . . . scaffold41594 WUBlastX LTR_Pao 58292 58342 25 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Ngaro 3414 3959 168 + . . . . . -1 -1 -1 . . . scaffold35430 WUBlastX LINE_RTE-X 18318 18491 47 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 737070 737375 77 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_IS4EU 512427 513224 339 - . . . . . -1 -1 -1 . . . scaffold296 WUBlastX DNA_Maverick 8803 9420 355 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LINE_RTE-X 292051 292515 129 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LINE_RTE-X 294388 294774 91 - . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LTR_Gypsy 77545 77970 235 + . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX LINE_RTE-X 313626 314300 164 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 376866 377243 310 + . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LTR_Gypsy 22049 22552 152 + . . . . . -1 -1 -1 . . . scaffold879 WUBlastX LINE_L1-Tx1 162455 162799 69 - . . . . . -1 -1 -1 . . . C35042 WUBlastX LINE_RTE-X 9420 10523 262 - . . C35042 GLEAN mRNA 1730 15534 0.391528 + . ID=CGI_10001403; C29450 WUBlastX LINE_Penelope 5803 6258 124 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Ngaro 141362 141535 82 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Ngaro 141694 141963 80 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX DNA_Harbinger 20567 20884 67 - . . . . . -1 -1 -1 . . . scaffold42740 WUBlastX DNA_Harbinger 75309 76163 323 - . . scaffold42740 GLEAN mRNA 65305 90130 0.999494 + . ID=CGI_10007608; scaffold42740 WUBlastX DNA_Harbinger 75309 76163 323 - . . scaffold42740 GLEAN mRNA 75816 93610 0.249736 - . ID=CGI_10007609; scaffold42190 WUBlastX LTR_DIRS 11309 11797 106 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX LTR_DIRS 11743 12252 278 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_L1-Tx1 266073 266222 44 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold1764 WUBlastX DNA_Kolobok 521 676 60 - . . . . . -1 -1 -1 . . . scaffold1764 WUBlastX DNA_Kolobok 764 940 92 - . . . . . -1 -1 -1 . . . scaffold1764 WUBlastX DNA_Kolobok 1121 1306 40 - . . . . . -1 -1 -1 . . . scaffold1764 WUBlastX DNA_Kolobok 1435 1632 119 - . . . . . -1 -1 -1 . . . scaffold1764 WUBlastX DNA_Kolobok 1888 2688 59 - . . . . . -1 -1 -1 . . . scaffold1632 WUBlastX LINE_RTE-X 37382 38239 287 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_L1 195916 196008 50 - . . . . . -1 -1 -1 . . . scaffold831 WUBlastX LINE_L1 252629 252844 34 - . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX DNA_IS4EU 101062 101268 32 + . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 101285 101386 54 + . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 101388 102017 185 + . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 102025 102570 130 + . . scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold90 WUBlastX DNA_Academ 67673 69835 445 - . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX DNA_hAT-hATw 8583 10007 485 - . . . . . -1 -1 -1 . . . scaffold788 WUBlastX LINE_L1 34551 35963 181 - . . . . . -1 -1 -1 . . . scaffold1033 WUBlastX LINE_RTE-BovB 15109 15435 47 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_TcMar-Tc1 277332 278360 456 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-X 238120 238449 68 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_DIRS 78491 79372 374 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy 603361 604242 376 + . . . . . -1 -1 -1 . . . scaffold33980 WUBlastX LTR_Ngaro 9845 10714 314 - . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold866 WUBlastX LTR_DIRS 16237 16731 213 - . . . . . -1 -1 -1 . . . scaffold866 WUBlastX LTR_DIRS 16743 16919 79 - . . . . . -1 -1 -1 . . . scaffold866 WUBlastX LTR_DIRS 16931 17824 248 - . . . . . -1 -1 -1 . . . scaffold35138 WUBlastX LTR_Gypsy 11273 11365 22 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy-Cigr 1213068 1213337 120 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Gypsy 1174003 1175271 198 + . . . . . -1 -1 -1 . . . scaffold1629 WUBlastX LINE_RTE-X 33921 34304 26 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 1304612 1305316 71 + . . . . . -1 -1 -1 . . . scaffold39134 WUBlastX LTR_Gypsy 48923 49456 178 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 49420 49656 145 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 49686 50204 319 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold1377 WUBlastX LTR_Gypsy 150098 150220 27 + . . scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold461 WUBlastX RC_Helitron 467474 467737 37 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Gypsy 46334 47356 142 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy 41410 43479 691 - . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LINE_RTE-X 192190 193149 420 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_CR1-L2 293893 294336 46 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_RTE-X 56328 56735 150 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Ngaro 366896 368362 691 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 366896 368362 691 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold942 WUBlastX DNA_PiggyBac 124694 125830 562 - . . scaffold942 GLEAN mRNA 113666 137722 0.300224 + . ID=CGI_10019154; C28722 WUBlastX LINE_L2 4483 5364 512 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 1078519 1078629 68 + . . . . . -1 -1 -1 . . . C34856 WUBlastX LTR_Gypsy 9229 9402 151 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 9387 9521 106 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 9524 10219 594 + . . C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; scaffold829 WUBlastX LINE_L1-Tx1 614845 615045 61 + . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 149026 150831 515 + . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 148406 148537 103 + . . . . . -1 -1 -1 . . . scaffold1083 WUBlastX LINE_RTE-X 378653 378964 168 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 439055 439375 51 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_Gypsy 249021 250439 207 - . . scaffold925 GLEAN mRNA 245750 251543 0.996749 - . ID=CGI_10017422; scaffold99 WUBlastX LTR_Gypsy-Troyk 528265 528660 165 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LTR_Ngaro 121631 122413 526 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LTR_Ngaro 122401 122556 29 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LTR_Gypsy 59596 60189 23 + . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX LTR_Gypsy 167479 167622 46 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold1900 WUBlastX LTR_Ngaro 410299 411279 608 + . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX LINE_L1-Tx1 17258 17716 57 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold1629 WUBlastX LINE_RTE-X 36423 36581 53 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L2 261649 261825 41 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L2 262025 262207 33 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_CR1 69777 69941 35 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_CR1-L2 732240 732386 29 + . . . . . -1 -1 -1 . . . scaffold240 WUBlastX LINE_CR1-L2 159931 160113 65 - . . scaffold240 GLEAN mRNA 157462 167089 0.999253 - . ID=CGI_10007850; scaffold204 WUBlastX DNA_TcMar-ISRm1 577442 577891 40 + . . scaffold204 GLEAN mRNA 573438 596887 0.209879 + . ID=CGI_10026118; scaffold1100 WUBlastX LTR_Pao 38165 38740 54 + . . scaffold1100 GLEAN mRNA 34919 38872 0.9999 + . ID=CGI_10009426; scaffold221 WUBlastX LTR_Copia 118464 118562 28 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX LINE_CR1-L2 212401 212601 48 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LINE_CR1 57094 57147 30 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_L2 120124 120390 38 + . . scaffold1816 GLEAN mRNA 110695 122090 0.998785 + . ID=CGI_10014398; scaffold40586 WUBlastX LINE_L2 51309 51689 42 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LINE_CR1 304246 304569 23 + . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_En-Spm 116011 116217 61 - . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_L2 290532 290780 39 - . . scaffold890 GLEAN mRNA 287435 312343 0.999997 - . ID=CGI_10014480; scaffold625 WUBlastX DNA_En-Spm 521591 521884 33 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Gypsy 20235 20345 20 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_IS4EU 336381 336572 56 + . . . . . -1 -1 -1 . . . scaffold42528 WUBlastX LTR_ERV1 144177 144242 54 + . . scaffold42528 GLEAN mRNA 136401 146936 0.889923 + . ID=CGI_10007210; C28258 WUBlastX LINE_I 3216 3872 36 + . . C28258 GLEAN mRNA 3417 4139 0.593325 + . ID=CGI_10000414; scaffold351 WUBlastX DNA_IS4EU 266602 266793 56 - . . . . . -1 -1 -1 . . . scaffold1116 WUBlastX RC_Helitron 28281 28394 68 - . . . . . -1 -1 -1 . . . scaffold1564 WUBlastX DNA_hAT-Ac 107842 108012 22 - . . scaffold1564 GLEAN mRNA 80148 112523 0.650997 - . ID=CGI_10005199; scaffold655 WUBlastX LTR_Gypsy 325008 325052 21 - . . . . . -1 -1 -1 . . . scaffold1855 WUBlastX LTR_Gypsy 137665 137898 26 - . . scaffold1855 GLEAN mRNA 127608 144309 0.514933 - . ID=CGI_10008870; scaffold1018 WUBlastX LTR_Gypsy 394051 394314 32 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LTR_Gypsy 155993 156172 75 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Gypsy 36024 36317 25 - . . scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold809 WUBlastX LTR_Gypsy 54741 54977 52 + . . . . . -1 -1 -1 . . . scaffold606 WUBlastX DNA_Harbinger 13622 13786 43 - . . . . . -1 -1 -1 . . . scaffold43576 WUBlastX DNA_Kolobok 252512 252676 45 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX DNA_TcMar-Tc1 266928 267080 36 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_TcMar-Tc1 21058 21168 32 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 247171 247491 27 + . . . . . -1 -1 -1 . . . scaffold36002 WUBlastX LINE_Penelope 14382 14540 24 - . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX LINE_L1 41203 41352 65 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold42896 WUBlastX LINE_Penelope 201903 202190 33 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 665534 665635 37 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_RTE-X 369732 370094 79 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LINE_RTE-X 369732 370094 79 + . . scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold1836 WUBlastX LINE_RTE-X 108132 108245 29 - . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 369589 369801 43 + . . . . . -1 -1 -1 . . . scaffold35476 WUBlastX LINE_RTE-BovB 10860 11132 47 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_PiggyBac 378499 378723 28 - . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_RTE-X 187283 187615 20 + . . scaffold421 GLEAN mRNA 182657 200231 1 + . ID=CGI_10012156; scaffold204 WUBlastX LINE_RTE-X 727573 727809 55 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Copia 266714 267043 43 + . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold443 WUBlastX LINE_RTE-X 281775 282068 44 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_RTE-X 831378 831647 24 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX DNA_Sola 1007 1282 40 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX DNA_hAT-Tip100 1259476 1259829 55 + . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX DNA_PiggyBac 48930 49124 29 - . . . . . -1 -1 -1 . . . scaffold38272 WUBlastX LINE_L1-Tx1 48314 48436 26 + . . scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold72 WUBlastX DNA_TcMar-Tc1 346368 346508 29 + . . . . . -1 -1 -1 . . . scaffold382 WUBlastX LINE_CR1 1803 1859 32 - . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LTR_Gypsy 24643 25083 52 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX DNA_MuDR 178968 179126 62 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold1621 WUBlastX LINE_CR1-L2 1308 1439 76 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_L2 79564 80046 78 + . . scaffold442 GLEAN mRNA 79786 80136 0.999397 + . ID=CGI_10005515; scaffold1352 WUBlastX LTR_Gypsy 146350 146820 87 - . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 49470 49868 25 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 51307 51438 29 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Harbinger 756732 756929 28 + . . scaffold20 GLEAN mRNA 756872 758344 0.738574 - . ID=CGI_10023597; C22728 WUBlastX DNA_Harbinger 1696 1905 25 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_IS4EU 49099 49341 60 + . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_TcMar-Marin 280526 281032 30 + . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX DNA_TcMar-Marin 43523 43645 22 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LINE_L2 151731 151934 73 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_RTE-X 236846 237139 39 - . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LINE_RTE-X 173438 173665 37 - . . scaffold445 GLEAN mRNA 165031 179035 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX LINE_RTE-X 173438 173665 37 - . . scaffold445 GLEAN mRNA 157494 175078 0.500104 + . ID=CGI_10019431; scaffold1307 WUBlastX LINE_RTE-X 802365 802691 40 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 265759 265983 46 - . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LINE_RTE-X 133812 134222 27 - . . . . . -1 -1 -1 . . . scaffold42158 WUBlastX LINE_RTE-X 83691 83828 64 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_CR1-L2 603736 604233 45 - . . . . . -1 -1 -1 . . . scaffold40442 WUBlastX LINE_L2 86641 86709 20 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_CR1 93938 94159 75 + . . . . . -1 -1 -1 . . . scaffold1605 WUBlastX DNA_hAT 53509 53865 117 - . . scaffold1605 GLEAN mRNA 51474 53886 1 - . ID=CGI_10023343; scaffold290 WUBlastX DNA_hAT 534101 534448 75 + . . scaffold290 GLEAN mRNA 534221 539598 0.981153 + . ID=CGI_10018554; scaffold786 WUBlastX DNA_En-Spm 204213 204407 53 - . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX DNA_Crypton 120298 120549 98 - . . scaffold42840 GLEAN mRNA 99061 121834 0.994857 - . ID=CGI_10007835; scaffold1596 WUBlastX DNA_Crypton 6552 7001 61 + . . scaffold1596 GLEAN mRNA 5776 6731 0.997715 + . ID=CGI_10000647; scaffold13 WUBlastX DNA_IS4EU 193300 193425 36 + . . scaffold13 GLEAN mRNA 172056 194004 0.998501 + . ID=CGI_10013207; scaffold35406 WUBlastX LINE_Jockey 16155 16388 43 + . . scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold1885 WUBlastX LTR_Gypsy 7675 7995 91 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L1 330448 330513 25 + . . scaffold1241 GLEAN mRNA 329086 342003 0.999796 + . ID=CGI_10016436; scaffold606 WUBlastX LINE_L1-Tx1 297424 297579 94 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_Rex-Babar 48809 48913 29 + . . scaffold950 GLEAN mRNA 45484 50998 0.326384 + . ID=CGI_10022918; scaffold461 WUBlastX LINE_RTE-X 505612 505803 63 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold1575 WUBlastX LTR_Gypsy 68048 68335 101 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_DIRS 256723 256818 29 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 256821 256901 48 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold44 WUBlastX DNA_Zator 90192 90296 24 + . . scaffold44 GLEAN mRNA 84536 96783 0.779083 + . ID=CGI_10016819; scaffold204 WUBlastX DNA_TcMar-Marin 418111 418209 23 + . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LINE_CR1-L2 18430 18693 100 + . . scaffold667 GLEAN mRNA 6729 22533 0.999844 - . ID=CGI_10005354; scaffold440 WUBlastX LINE_CR1-L2 369002 369061 33 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_L2 26347 26583 63 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy 47279 47992 49 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_Gypsy 121222 121323 20 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX DNA_TcMar-Marin 170199 170240 20 + . . . . . -1 -1 -1 . . . scaffold467 WUBlastX LINE_Penelope 39087 39605 33 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_TcMar-Tc1 104971 105243 59 - . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_TcMar-Tc1 105275 105418 54 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 649389 649769 56 + . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LINE_RTE-X 35479 35814 66 - . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_CR1 329789 330118 88 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Gypsy 584496 584672 22 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1-Tx1 321663 321791 39 + . . . . . -1 -1 -1 . . . scaffold1729 WUBlastX LINE_L1 193720 193839 46 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_RTE-X 207443 207718 45 + . . scaffold1889 GLEAN mRNA 199666 208024 0.836613 - . ID=CGI_10019608; scaffold557 WUBlastX LINE_RTE-X 171250 171849 33 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 209817 209969 79 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_RTE-X 480367 480885 61 - . . . . . -1 -1 -1 . . . scaffold42096 WUBlastX LINE_RTE-X 105249 105821 37 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold1836 WUBlastX LINE_Rex-Babar 35484 36464 43 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 341457 342080 61 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_Gypsy 157013 157636 61 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_L1-Tx1 219114 219581 61 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_L2 641927 642076 50 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_CR1 268705 269418 33 - . . scaffold492 GLEAN mRNA 268203 287677 0.999027 + . ID=CGI_10024818; scaffold557 WUBlastX LINE_L2 154818 154889 21 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LINE_CR1-L2 479451 479885 52 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Gypsy 265539 265619 20 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Gypsy 265654 265791 102 - . . . . . -1 -1 -1 . . . scaffold35154 WUBlastX LTR_Gypsy 5781 5993 93 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LTR_Gypsy 65410 65730 132 - . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX DNA_Harbinger 135771 135983 37 + . . . . . -1 -1 -1 . . . scaffold43624 WUBlastX DNA_Harbinger 135983 136060 51 + . . . . . -1 -1 -1 . . . scaffold42866 WUBlastX DNA_IS4EU 71251 71763 113 - . . scaffold42866 GLEAN mRNA 43150 93731 0.871395 + . ID=CGI_10007991; scaffold1834 WUBlastX DNA_MuDR 190370 191512 30 + . . scaffold1834 GLEAN mRNA 187623 216470 0.374762 + . ID=CGI_10016658; scaffold43076 WUBlastX RC_Helitron 181025 181531 72 - . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold298 WUBlastX LTR_Gypsy 312471 312911 115 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 153990 154232 53 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 154290 154418 56 + . . . . . -1 -1 -1 . . . C34876 WUBlastX LINE_L2 12544 12672 55 + . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_L1 142906 143205 34 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_PiggyBac 458659 459489 85 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_L1-Tx1 28218 28508 117 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L1-Tx1 254198 254383 100 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold39594 WUBlastX LINE_CR1-L2 54402 54677 99 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_CR1-L2 559576 559821 131 + . . . . . -1 -1 -1 . . . scaffold353 WUBlastX LTR_Gypsy 426 773 132 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX DNA_Harbinger 909599 909844 125 - . . scaffold1785 GLEAN mRNA 909020 927662 0.54223 - . ID=CGI_10024406; scaffold1766 WUBlastX LTR_DIRS 11633 11797 78 + . . scaffold1766 GLEAN mRNA 8111 13760 0.999906 - . ID=CGI_10006270; scaffold1766 WUBlastX LTR_DIRS 11788 11886 30 + . . scaffold1766 GLEAN mRNA 8111 13760 0.999906 - . ID=CGI_10006270; scaffold102 WUBlastX LINE_L1 1228547 1229194 40 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_L2 30765 30923 27 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 86600 87337 113 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Gypsy 134878 135096 75 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX DNA_TcMar-ISRm1 308720 309385 112 - . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_L1-Tx1 197504 197776 45 - . . scaffold400 GLEAN mRNA 195909 223191 0.813725 - . ID=CGI_10011437; scaffold1737 WUBlastX LINE_Penelope 276040 276714 64 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 242793 243011 30 + . . . . . -1 -1 -1 . . . scaffold35926 WUBlastX LINE_RTE-X 1102 1602 112 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX DNA_IS4EU 283097 283198 40 + . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX LINE_L1 17710 18129 42 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold363 WUBlastX LINE_L1 68746 68883 55 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LTR_Ngaro 94536 94964 82 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX DNA_TcMar-Fot1 209729 209851 40 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX DNA_TcMar-Fot1 209836 210153 81 + . . . . . -1 -1 -1 . . . C31300 WUBlastX LTR_Gypsy 7617 7736 21 - . . . . . -1 -1 -1 . . . C32918 WUBlastX DNA_TcMar-Fot1 8785 9210 120 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-X 158310 158723 128 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1-Tx1 144003 144380 119 - . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_L1-Tx1 398166 398504 130 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_L1-Tx1 398608 399342 496 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_L1-Tx1 399365 399931 222 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_L1-Tx1 399844 401094 100 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L2 88924 89361 35 + . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_CR1 17196 17792 139 - . . . . . -1 -1 -1 . . . scaffold1471 WUBlastX DNA_Kolobok-IS4 12535 12582 32 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_CR1-L2 47338 47763 165 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LTR_Copia 139375 141270 1143 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LINE_CR1-L2 240758 241090 178 - . . scaffold790 GLEAN mRNA 239122 257283 0.83657 + . ID=CGI_10013172; scaffold1643 WUBlastX LTR_Ngaro 182832 182993 53 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LTR_Gypsy 188594 188674 21 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold39196 WUBlastX LTR_ERVK 25931 25993 22 + . . scaffold39196 GLEAN mRNA 20999 26289 0.999968 + . ID=CGI_10003216; scaffold39196 WUBlastX LTR_ERVK 25931 25993 22 + . . scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; C27694 WUBlastX DNA_Maverick 2556 2702 56 - . . C27694 GLEAN mRNA 2532 3020 1 - . ID=CGI_10000376; scaffold41086 WUBlastX LTR_Pao 11728 12474 104 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LTR_Gypsy 99033 99203 26 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 113103 113240 28 + . . . . . -1 -1 -1 . . . scaffold253 WUBlastX LTR_Gypsy 1805 2014 27 - . . . . . -1 -1 -1 . . . scaffold1763 WUBlastX LINE_RTE-X 538293 538478 52 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_L1-Tx1 70756 70935 56 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy 362336 362431 24 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1-L2 590936 591187 61 + . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX DNA_IS4EU 122877 123074 89 + . . . . . -1 -1 -1 . . . scaffold1172 WUBlastX DNA_IS4EU 123070 123297 103 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_hAT-Ac 364090 364371 28 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 31767 32180 49 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LINE_RTE-X 32206 32328 21 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Ngaro 301462 302016 186 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LTR_Ngaro 251729 252508 176 + . . . . . -1 -1 -1 . . . scaffold647 WUBlastX DNA_TcMar-Tc1 10969 11436 167 - . . . . . -1 -1 -1 . . . scaffold1764 WUBlastX DNA_Kolobok 1213 1680 68 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_L1-Tx1 162418 163050 118 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_L1-Tx1 1214063 1214206 55 + . . scaffold1179 GLEAN mRNA 1211321 1215235 0.457085 - . ID=CGI_10027415; scaffold41772 WUBlastX LTR_Gypsy 100384 100533 64 + . . . . . -1 -1 -1 . . . scaffold301 WUBlastX LINE_Penelope 627143 627508 173 - . . . . . -1 -1 -1 . . . scaffold739 WUBlastX DNA_TcMar-Tc1 91858 92190 135 + . . . . . -1 -1 -1 . . . C28544 WUBlastX LTR_Gypsy 3878 5662 1737 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 201158 201268 43 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 201667 202212 147 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_RTE-X 84795 85163 64 - . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LTR_DIRS 40267 40524 86 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LTR_DIRS 41176 41457 118 + . . . . . -1 -1 -1 . . . scaffold21998 WUBlastX DNA_TcMar-Tc1 74 661 210 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 90016 90714 393 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 282305 283975 1020 + . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LTR_Gypsy 68596 70668 942 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Pao 360271 360708 320 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 113469 113609 139 + . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX DNA_TcMar-Tc1 180657 180980 119 - . . . . . -1 -1 -1 . . . scaffold1495 WUBlastX LINE_Jockey 3114 3200 32 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 414781 415176 209 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; C33534 WUBlastX LINE_L2 11148 11489 208 + . . . . . -1 -1 -1 . . . C33534 WUBlastX LINE_L2 11525 13150 704 + . . . . . -1 -1 -1 . . . C33534 WUBlastX LINE_L2 12937 14292 619 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Gypsy-Cigr 487831 489936 1059 - . . scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold1035 WUBlastX LTR_Gypsy 122781 124310 644 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX DNA_Kolobok-IS4 118936 119415 196 - . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX LTR_Ngaro 38700 38921 65 + . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX LTR_Ngaro 38932 39222 85 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 308458 308673 79 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 308652 309188 348 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 309373 310059 399 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 310059 310301 217 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 310280 310675 314 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 310642 311598 614 - . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX DNA_Academ 138762 140228 117 + . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX DNA_Academ 140770 141138 93 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 322647 322925 78 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L1 386702 386914 82 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_TcMar-Marin 87947 88222 158 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L2 867568 867852 105 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L2 867863 867985 60 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L2 868065 868247 20 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 568422 568478 22 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_RTE-BovB 236530 237111 35 + . . . . . -1 -1 -1 . . . scaffold1572 WUBlastX LINE_L1-Tx1 53735 54883 136 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Gypsy 318094 321840 2462 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 36998 38152 315 - . . . . . -1 -1 -1 . . . scaffold1873 WUBlastX LINE_RTE-X 159221 159994 214 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX RC_Helitron 461095 462411 543 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX RC_Helitron 462411 463256 651 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX RC_Helitron 463874 466714 1284 - . . . . . -1 -1 -1 . . . C25596 WUBlastX LINE_CR1-L2 2422 3222 232 + . . . . . -1 -1 -1 . . . scaffold1706 WUBlastX LINE_RTE-BovB 71915 72433 297 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 180639 184325 2643 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 1564405 1568091 2643 + . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L2 65279 65404 59 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_TcMar-Marin 212113 212490 186 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX LINE_L2 384308 385525 57 + . . scaffold914 GLEAN mRNA 383322 392651 0.969071 - . ID=CGI_10018890; scaffold86 WUBlastX DNA_IS4EU 1475316 1476086 156 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-BovB 337878 338447 319 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX DNA_TcMar-Tc1 195675 195938 67 + . . . . . -1 -1 -1 . . . scaffold1399 WUBlastX LINE_L1-Tx1 126964 127668 180 - . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Gypsy 276759 277349 93 - . . . . . -1 -1 -1 . . . scaffold17 WUBlastX LTR_Ngaro 4513 4959 285 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_L1-Tx1 371349 372617 144 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 665392 665664 24 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 3661 4110 229 - . . scaffold1448 GLEAN mRNA 631 18510 0.999948 + . ID=CGI_10011852; scaffold1448 WUBlastX LINE_RTE-X 4107 4262 99 - . . scaffold1448 GLEAN mRNA 631 18510 0.999948 + . ID=CGI_10011852; scaffold38784 WUBlastX LINE_L1-Tx1 17698 17841 97 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Pao 441258 442574 320 + . . scaffold150 GLEAN mRNA 440940 442586 0.995484 + . ID=CGI_10028609; scaffold38854 WUBlastX LTR_Gypsy 35495 35521 22 + . . . . . -1 -1 -1 . . . scaffold36118 WUBlastX LTR_Gypsy 6 350 228 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_L1 209758 209829 26 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold1532 WUBlastX LTR_Gypsy 653746 653865 121 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1 735520 736017 71 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LTR_Ngaro 382109 382609 357 + . . . . . -1 -1 -1 . . . scaffold579 WUBlastX LTR_Pao 213929 214195 109 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold39966 WUBlastX LTR_Gypsy 57315 57536 95 - . . . . . -1 -1 -1 . . . C28574 WUBlastX LINE_L1-Tx1 2934 3251 252 + . . . . . -1 -1 -1 . . . C28574 WUBlastX LINE_L1-Tx1 3400 3849 195 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LTR_Gypsy 49116 49376 74 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LTR_Gypsy 611107 611148 27 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_IS4EU 432521 432637 47 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 456378 456866 390 - . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; C28958 WUBlastX LTR_Gypsy 5475 6053 512 + . . . . . -1 -1 -1 . . . scaffold42328 WUBlastX LINE_RTE-BovB 27686 28276 440 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Pao 295034 295393 82 + . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_RTE-X 22025 22321 80 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L1-Tx1 401777 402445 40 - . . . . . -1 -1 -1 . . . scaffold270 WUBlastX LINE_RTE-BovB 95831 97126 454 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L1 474878 475099 35 - . . scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold804 WUBlastX DNA_hAT-hATw 345899 346036 26 + . . . . . -1 -1 -1 . . . scaffold564 WUBlastX LINE_CR1-L2 223416 223799 193 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1-Tx1 868514 870181 150 + . . . . . -1 -1 -1 . . . scaffold42530 WUBlastX LINE_L2 46647 47783 426 + . . scaffold42530 GLEAN mRNA 44450 55395 0.966018 + . ID=CGI_10007161; scaffold1897 WUBlastX LINE_RTE-X 201610 201840 41 + . . scaffold1897 GLEAN mRNA 190471 249775 0.317357 - . ID=CGI_10020917; scaffold588 WUBlastX LINE_RTE-X 408245 409504 258 - . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_RTE-X 410803 411126 65 - . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX RC_Helitron 17000 17179 45 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_IS4EU 52430 53242 591 - . . . . . -1 -1 -1 . . . scaffold215 WUBlastX LINE_RTE-BovB 155549 155965 206 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold215 WUBlastX LINE_RTE-BovB 156121 156411 234 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold215 WUBlastX LINE_RTE-BovB 156479 156604 128 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold1525 WUBlastX LINE_Penelope 56222 57349 513 + . . scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold242 WUBlastX LTR_Pao 78064 78513 64 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold817 WUBlastX DNA_hAT-Ac 208639 210153 471 - . . . . . -1 -1 -1 . . . C32228 WUBlastX LTR_Copia 4345 5271 516 + . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_RTE-X 15963 16304 36 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy 83356 83499 71 + . . scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold593 WUBlastX LTR_Pao 264806 265531 149 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L2 288031 288645 471 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 298763 298870 22 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX DNA_hAT-Tip100 177534 178436 480 - . . scaffold305 GLEAN mRNA 172174 179381 0.995798 - . ID=CGI_10019119; scaffold305 WUBlastX DNA_hAT-Tip100 178439 178552 21 - . . scaffold305 GLEAN mRNA 172174 179381 0.995798 - . ID=CGI_10019119; scaffold305 WUBlastX DNA_hAT-Tip100 178543 178758 119 - . . scaffold305 GLEAN mRNA 172174 179381 0.995798 - . ID=CGI_10019119; scaffold88 WUBlastX LINE_L1 25561 26424 579 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 25561 26424 579 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold1017 WUBlastX LINE_RTE-BovB 33452 34177 529 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LTR_Gypsy 209794 209955 32 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_L1-Tx1 488073 488888 407 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_L1-Tx1 488843 489532 226 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_RTE-X 185056 185349 83 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_RTE-X 188705 189019 89 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Pao 637314 637829 174 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1518 WUBlastX LTR_Ngaro 270637 270702 22 - . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold317 WUBlastX LTR_Ngaro 116651 117988 770 + . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX LTR_Gypsy 62301 63635 296 - . . scaffold40638 GLEAN mRNA 61308 67362 0.755375 - . ID=CGI_10004287; scaffold265 WUBlastX LTR_Ngaro 67147 68214 648 - . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold588 WUBlastX LINE_Penelope 79112 80422 603 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Copia 552495 552644 39 - . . . . . -1 -1 -1 . . . scaffold617 WUBlastX DNA_Academ 48688 48864 61 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1086780 1086881 77 - . . . . . -1 -1 -1 . . . scaffold43630 WUBlastX LINE_L2 288357 288662 48 - . . . . . -1 -1 -1 . . . scaffold1342 WUBlastX LINE_CR1-L2 4573 4758 59 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_L2 223377 223742 42 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 501921 502196 58 + . . . . . -1 -1 -1 . . . scaffold37558 WUBlastX LTR_Gypsy 9352 9825 64 - . . scaffold37558 GLEAN mRNA 5319 20987 0.499838 + . ID=CGI_10002409; scaffold1024 WUBlastX LTR_Gypsy 92033 92335 22 - . . scaffold1024 GLEAN mRNA 87362 100892 0.557329 - . ID=CGI_10028520; scaffold1706 WUBlastX LTR_Gypsy 76942 77073 37 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L1 805289 805519 35 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX DNA_Harbinger 764570 764854 58 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX DNA_Harbinger 495880 496107 42 + . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX RC_Helitron 79103 79426 34 - . . scaffold43940 GLEAN mRNA 65972 85108 0.808068 + . ID=CGI_10014150; scaffold266 WUBlastX RC_Helitron 299278 299412 49 - . . . . . -1 -1 -1 . . . scaffold1199 WUBlastX RC_Helitron 46728 46946 48 - . . scaffold1199 GLEAN mRNA 46410 49371 0.592263 - . ID=CGI_10005923; scaffold32064 WUBlastX DNA_IS4EU 4837 5331 47 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_IS4EU 213295 213480 77 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_Kolobok-IS4 533014 533163 50 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Kolobok-IS4 1761728 1761964 60 - . . scaffold1024 GLEAN mRNA 1751618 1765575 0.556405 - . ID=CGI_10028585; scaffold905 WUBlastX LINE_L2 20138 20473 64 - . . . . . -1 -1 -1 . . . scaffold1125 WUBlastX LINE_Penelope 296698 297153 30 - . . scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold1532 WUBlastX DNA_PiggyBac 607338 607589 59 - . . scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold392 WUBlastX LINE_L1 444383 444880 30 + . . scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold609 WUBlastX LINE_L1 149870 150067 23 + . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1-Tx1 145161 145247 35 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_Penelope 920906 921025 22 + . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_P 94947 95144 54 + . . scaffold751 GLEAN mRNA 94947 97024 0.999415 + . ID=CGI_10017382; scaffold1036 WUBlastX LINE_L1 135395 136285 25 + . . scaffold1036 GLEAN mRNA 134621 136288 0.999413 + . ID=CGI_10019950; scaffold501 WUBlastX LTR_Gypsy 169921 170355 21 - . . scaffold501 GLEAN mRNA 159121 185490 0.79399 - . ID=CGI_10027502; scaffold266 WUBlastX DNA_NOF 290648 290812 47 - . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LINE_Penelope 91073 91186 31 - . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LINE_Penelope 91583 91804 24 - . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LINE_Penelope 117639 117749 59 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX DNA_TcMar-Tc1 84243 84407 43 + . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX DNA_TcMar-Fot1 127259 127393 71 + . . scaffold1096 GLEAN mRNA 127172 128535 0.984969 + . ID=CGI_10006456; C29914 WUBlastX LINE_RTE-BovB 1640 1705 47 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_RTE-X 230303 230617 23 + . . . . . -1 -1 -1 . . . C30118 WUBlastX LINE_Rex-Babar 323 751 32 + . . C30118 GLEAN mRNA 633 6001 0.543283 + . ID=CGI_10000594; scaffold417 WUBlastX LINE_R1 30131 30304 40 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_PiggyBac 169459 169749 46 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Maverick 570955 571140 70 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_RTE-X 225955 226152 34 - . . . . . -1 -1 -1 . . . scaffold1163 WUBlastX LINE_RTE-X 198389 198616 43 - . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold43442 WUBlastX LINE_RTE-X 3387 3596 41 + . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX LINE_RTE-X 148531 148653 58 + . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_RTE-X 102873 103043 56 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 496849 496995 29 + . . scaffold107 GLEAN mRNA 482349 496880 0.436429 + . ID=CGI_10025056; C29958 WUBlastX LINE_RTE-X 9 386 48 + . . . . . -1 -1 -1 . . . scaffold42840 WUBlastX LINE_RTE-X 25062 25319 40 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 515353 515790 22 - . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515353 515790 22 - . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold43608 WUBlastX LINE_RTE-X 230832 230954 29 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LINE_RTE-X 37950 38264 77 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LINE_RTE-X 148887 149201 79 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_RTE-X 268945 269163 48 - . . scaffold507 GLEAN mRNA 254357 273838 0.999949 - . ID=CGI_10019093; scaffold43054 WUBlastX LINE_RTE-X 144475 144690 68 + . . . . . -1 -1 -1 . . . scaffold34124 WUBlastX LTR_Gypsy-Cigr 2516 2644 72 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_L1-Tx1 3565 3738 32 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_Jockey 365826 365942 26 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_CR1-L2 215207 215524 56 + . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_CR1-L2 58995 59033 20 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_CR1 316110 316721 33 - . . scaffold753 GLEAN mRNA 307757 329663 0.499275 + . ID=CGI_10014210; C24148 WUBlastX LINE_CR1-L2 926 1318 57 + . . . . . -1 -1 -1 . . . scaffold36390 WUBlastX LTR_Gypsy 5527 5805 90 + . . scaffold36390 GLEAN mRNA 5206 5853 0.999984 + . ID=CGI_10001879; scaffold301 WUBlastX LTR_Gypsy-Cigr 1141825 1142112 86 - . . scaffold301 GLEAN mRNA 1141876 1142190 0.998748 - . ID=CGI_10026747; scaffold1399 WUBlastX LTR_DIRS 120730 121098 84 - . . scaffold1399 GLEAN mRNA 95731 121782 0.470575 + . ID=CGI_10007050; scaffold676 WUBlastX LTR_Ngaro 541747 542010 74 - . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LTR_Gypsy 88739 89080 64 - . . scaffold40556 GLEAN mRNA 88418 88975 0.618241 - . ID=CGI_10004254; scaffold1097 WUBlastX DNA_TcMar-Marin 165343 165591 39 - . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LTR_Ngaro 213286 213498 77 - . . . . . -1 -1 -1 . . . scaffold33842 WUBlastX LINE_L1-Tx1 9532 9657 24 - . . . . . -1 -1 -1 . . . scaffold31792 WUBlastX DNA_IS4EU 5345 5464 86 + . . . . . -1 -1 -1 . . . scaffold1873 WUBlastX LINE_RTE-X 179249 179443 45 - . . scaffold1873 GLEAN mRNA 176185 193037 0.487855 + . ID=CGI_10009300; scaffold38464 WUBlastX DNA_PiggyBac 53383 53448 48 + . . . . . -1 -1 -1 . . . scaffold40106 WUBlastX LINE_Proto2 63915 64214 80 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Maverick 1446107 1446244 27 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 501815 502000 47 + . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 330753 331139 20 + . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX LINE_RTE-BovB 17112 17327 43 - . . . . . -1 -1 -1 . . . scaffold1050 WUBlastX LINE_RTE-BovB 17662 17901 71 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 633593 633886 52 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LTR_Gypsy 120520 121146 66 + . . . . . -1 -1 -1 . . . scaffold188 WUBlastX LINE_RTE-X 225575 225823 65 + . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LINE_L1-Tx1 81169 81489 33 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_L1-Tx1 125710 125898 78 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_L1-Tx1 605256 605441 76 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L1-Tx1 307947 308222 37 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_CR1 27074 27235 38 + . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX DNA_Crypton 289534 290058 87 + . . . . . -1 -1 -1 . . . scaffold39180 WUBlastX LTR_Gypsy 27334 27444 31 + . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX DNA_IS4EU 249984 250238 69 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249984 250238 69 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold448 WUBlastX LTR_Gypsy 996232 996372 25 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX DNA_Harbinger 35468 35608 40 + . . scaffold44008 GLEAN mRNA 35492 36178 0.537986 + . ID=CGI_10015280; scaffold44008 WUBlastX DNA_Harbinger 35927 36124 34 + . . scaffold44008 GLEAN mRNA 35492 36178 0.537986 + . ID=CGI_10015280; scaffold440 WUBlastX LTR_Gypsy 37196 37486 83 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX LINE_L1 144050 144178 20 + . . . . . -1 -1 -1 . . . scaffold287 WUBlastX DNA_MuDR 795 1052 99 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA_MuDR 50740 50934 71 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 586422 586562 54 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_R2 494887 494913 22 + . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold36398 WUBlastX LTR_Gypsy 28248 28547 83 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 811279 811341 33 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_CR1-L2 1515028 1515642 46 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Gypsy 392466 392657 22 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy 392693 393196 30 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold36872 WUBlastX LINE_L2 21820 22167 93 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_MuDR 19650 19817 72 - . . . . . -1 -1 -1 . . . scaffold36768 WUBlastX LINE_L1 36685 37359 59 + . . scaffold36768 GLEAN mRNA 29335 37620 1 + . ID=CGI_10002113; scaffold37672 WUBlastX LINE_L1-Tx1 31933 32313 62 - . . . . . -1 -1 -1 . . . scaffold218 WUBlastX LINE_RTE-BovB 44887 44973 30 - . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_RTE-X 328327 328692 52 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_L1 303258 303503 38 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 131476 132159 68 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX DNA_Harbinger 208981 209103 50 + . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX DNA_IS4EU 39362 39496 45 + . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX DNA_IS4EU 40232 40321 34 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L1 365916 366404 87 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold354 WUBlastX LTR_Gypsy 48741 48845 21 + . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold924 WUBlastX LTR_Gypsy 135664 135711 24 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_MuDR 500035 500601 116 - . . scaffold317 GLEAN mRNA 500226 523403 0.473225 - . ID=CGI_10019359; scaffold336 WUBlastX LINE_L2 217927 217998 20 - . . . . . -1 -1 -1 . . . scaffold43210 WUBlastX LINE_RTE-BovB 25014 25250 55 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L2 243256 243462 116 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Gypsy 33249 33341 28 - . . . . . -1 -1 -1 . . . C25804 WUBlastX LINE_RTE-X 1429 1707 112 + . . . . . -1 -1 -1 . . . scaffold38750 WUBlastX LINE_RTE-X 17041 17307 106 + . . scaffold38750 GLEAN mRNA 15091 19690 0.999995 + . ID=CGI_10002957; scaffold963 WUBlastX LINE_RTE-X 217119 217442 59 + . . . . . -1 -1 -1 . . . scaffold1067 WUBlastX DNA_Sola 102554 102739 34 - . . scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold168 WUBlastX LINE_CR1-L2 6377 6490 36 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX DNA_Kolobok-IS4 449106 449537 64 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_IS4EU 31332 31610 97 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX LINE_Penelope 159910 160218 53 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX DNA_P 799221 800015 97 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_RTE-X 918712 918966 120 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX LINE_RTE-X 112577 112903 76 + . . scaffold1210 GLEAN mRNA 93719 132019 0.550359 - . ID=CGI_10014599; scaffold586 WUBlastX DNA_Sola 8878 9276 93 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_CR1 651211 651342 93 - . . . . . -1 -1 -1 . . . scaffold1644 WUBlastX LINE_CR1-L2 50753 51220 138 - . . . . . -1 -1 -1 . . . scaffold960 WUBlastX LINE_L2 50141 50305 25 + . . . . . -1 -1 -1 . . . scaffold1226 WUBlastX LTR_DIRS 24155 24472 87 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 319342 319782 75 - . . . . . -1 -1 -1 . . . scaffold37662 WUBlastX DNA_TcMar-Fot1 44839 45036 37 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 215345 215584 71 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Pogo 56945 57673 61 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_L2 66517 66966 116 + . . . . . -1 -1 -1 . . . scaffold868 WUBlastX DNA_Merlin 37754 38158 79 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Gypsy 521849 521926 24 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_I 21339 21446 21 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold288 WUBlastX DNA_Maverick 232390 232671 123 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 285581 285898 79 - . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_L1-Tx1 293626 293868 119 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 79413 80465 313 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 81408 81644 183 - . . . . . -1 -1 -1 . . . scaffold36758 WUBlastX RC_Helitron 8665 10155 979 + . . . . . -1 -1 -1 . . . scaffold9 WUBlastX LINE_Penelope 2643 3359 546 + . . . . . -1 -1 -1 . . . scaffold579 WUBlastX DNA_hAT 238494 239165 95 + . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LINE_L2 192358 192963 35 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_En-Spm 255297 255935 41 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 328261 328635 152 - . . . . . -1 -1 -1 . . . scaffold716 WUBlastX DNA_IS4EU 54996 55136 26 + . . . . . -1 -1 -1 . . . scaffold716 WUBlastX DNA_IS4EU 55151 55345 130 + . . . . . -1 -1 -1 . . . scaffold43396 WUBlastX DNA_Crypton 113916 114305 34 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_IS4EU 224313 224687 43 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_IS4EU 395057 395431 43 + . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX DNA_hAT-Tip100 27780 28022 157 - . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX DNA_hAT-Tip100 98335 99234 142 - . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_Harbinger 201359 201664 44 - . . . . . -1 -1 -1 . . . scaffold40368 WUBlastX LINE_Penelope 5300 5653 126 - . . scaffold40368 GLEAN mRNA 2910 21310 0.999993 + . ID=CGI_10004043; scaffold32550 WUBlastX LTR_Ngaro 1148 1441 111 - . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LTR_Ngaro 11417 11611 108 - . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold579 WUBlastX LINE_L1 126673 127137 111 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 249458 249967 179 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L1-Tx1 669048 669491 109 - . . scaffold625 GLEAN mRNA 660953 675922 0.820405 - . ID=CGI_10023430; scaffold1532 WUBlastX LTR_Gypsy 600361 601185 552 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 601544 602860 614 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_RTE-BovB 472961 473152 51 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Gypsy 71438 72319 165 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX DNA_Harbinger 113457 113858 154 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX DNA_TcMar-Tc1 560176 560340 22 + . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Gypsy-Cigr 115276 115365 23 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_CR1-L2 746041 746289 122 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_Gypsy 748992 749393 38 - . . . . . -1 -1 -1 . . . scaffold327 WUBlastX LINE_RTE-X 38627 38794 71 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-X 1086495 1086956 135 - . . scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold1512 WUBlastX LTR_Gypsy 108227 108421 83 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; scaffold1512 WUBlastX LTR_Gypsy 108542 109861 1264 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; scaffold517 WUBlastX LTR_Pao 179076 179612 345 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 99993 100307 210 - . . . . . -1 -1 -1 . . . scaffold398 WUBlastX LINE_L2-Hydra 2935 4602 46 - . . scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold100 WUBlastX LTR_Ngaro 932288 932566 126 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LINE_L1 30128 30235 22 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_L1-Tx1 133337 133786 79 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 1295722 1296315 193 - . . . . . -1 -1 -1 . . . scaffold1652 WUBlastX RC_Helitron 226018 227061 137 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold1714 WUBlastX LTR_Gypsy 71510 71614 22 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LTR_Gypsy-Cigr 279671 280399 209 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LINE_L1 221827 222141 52 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_RTE-BovB 405976 406953 158 + . . scaffold374 GLEAN mRNA 405430 416354 0.985153 - . ID=CGI_10018724; scaffold951 WUBlastX LINE_RTE-BovB 198399 199133 207 + . . . . . -1 -1 -1 . . . scaffold42880 WUBlastX DNA_Maverick 64474 64848 226 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy-Cigr 74213 74680 78 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L1-Tx1 217174 217395 133 - . . scaffold1352 GLEAN mRNA 212932 230879 0.392918 - . ID=CGI_10018413; scaffold550 WUBlastX DNA_TcMar-Tc1 188338 188850 141 + . . . . . -1 -1 -1 . . . scaffold1725 WUBlastX LINE_Penelope 62307 62804 195 - . . . . . -1 -1 -1 . . . scaffold747 WUBlastX LTR_Gypsy 399027 399470 249 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Ngaro 1246552 1246701 97 + . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX DNA_hAT-Tip100 29277 30812 203 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy 80525 80569 20 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Gypsy 26575 26823 203 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_L2 273613 276849 1738 + . . . . . -1 -1 -1 . . . scaffold707 WUBlastX DNA_Harbinger 17972 18343 195 - . . . . . -1 -1 -1 . . . scaffold707 WUBlastX DNA_Harbinger 19281 19373 69 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_L2 559633 559944 130 + . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L2 140819 141418 201 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LTR_Gypsy 58733 62929 2299 - . . scaffold1825 GLEAN mRNA 52552 63242 0.967566 - . ID=CGI_10011138; scaffold535 WUBlastX LINE_L1-Tx1 166325 169327 1379 + . . scaffold535 GLEAN mRNA 158110 184507 0.999251 + . ID=CGI_10020284; scaffold816 WUBlastX LINE_L1-Tx1 362689 365685 1355 - . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_CR1 303256 303909 214 - . . . . . -1 -1 -1 . . . scaffold498 WUBlastX LTR_Ngaro 155997 156737 207 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Ngaro 86020 86760 207 + . . . . . -1 -1 -1 . . . scaffold1633 WUBlastX LTR_Ngaro 128885 129700 217 + . . . . . -1 -1 -1 . . . scaffold895 WUBlastX DNA_Harbinger 177365 177505 51 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1-Tx1 216460 217080 260 - . . scaffold698 GLEAN mRNA 215942 226142 0.793097 + . ID=CGI_10020736; scaffold226 WUBlastX LTR_Ngaro 469530 470489 214 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold43200 WUBlastX DNA_TcMar-Tc1 124591 125613 226 - . . scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold544 WUBlastX DNA_TcMar-Tc1 251639 252619 137 - . . scaffold544 GLEAN mRNA 248926 297755 0.519606 - . ID=CGI_10022553; scaffold581 WUBlastX LTR_Ngaro 134420 134737 52 + . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LTR_Ngaro 135125 135286 69 + . . . . . -1 -1 -1 . . . scaffold39986 WUBlastX LINE_RTE-X 62635 63831 153 - . . . . . -1 -1 -1 . . . scaffold37790 WUBlastX DNA_TcMar-Tc1 13197 13304 85 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Ngaro 29763 29834 45 - . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold1832 WUBlastX DNA_IS4EU 403175 403885 252 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX DNA_Sola 716190 716516 28 + . . . . . -1 -1 -1 . . . scaffold955 WUBlastX LINE_RTE-BovB 118543 118683 45 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 119033 119596 47 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 120020 120190 89 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold681 WUBlastX LTR_Gypsy-Troyk 314521 314748 146 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy-Troyk 315058 315984 719 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy-Troyk 316300 316497 128 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy-Troyk 316489 318078 722 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy-Troyk 318050 318943 671 - . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LINE_CR1 399647 399868 103 + . . scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1826 WUBlastX LTR_Gypsy 38409 39284 211 + . . . . . -1 -1 -1 . . . C29968 WUBlastX LINE_Proto2 1976 2500 85 + . . . . . -1 -1 -1 . . . scaffold1373 WUBlastX DNA_hAT 144327 145298 320 + . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX DNA_Kolobok 63010 63108 34 + . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 61431 62039 219 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_RTE-X 247928 248488 280 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_Sola 129366 129551 76 - . . . . . -1 -1 -1 . . . C23484 WUBlastX DNA_IS4EU 910 1575 227 - . . . . . -1 -1 -1 . . . C23484 WUBlastX DNA_IS4EU 2106 2279 98 - . . . . . -1 -1 -1 . . . scaffold837 WUBlastX LTR_Gypsy 7486 7938 59 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Maverick 399891 400001 98 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LTR_Gypsy 670643 670966 123 - . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX LINE_L1 44465 44689 46 - . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; C31246 WUBlastX LTR_Ngaro 8335 9069 318 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1 794587 794682 46 + . . . . . -1 -1 -1 . . . scaffold35438 WUBlastX LINE_L1 9293 9460 20 - . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold1512 WUBlastX LINE_RTE-X 271016 271567 254 - . . . . . -1 -1 -1 . . . scaffold34872 WUBlastX DNA_Sola 2647 3306 169 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX DNA_TcMar-Tc1 252414 252710 139 - . . scaffold1 GLEAN mRNA 239740 257002 0.998426 - . ID=CGI_10013473; scaffold1 WUBlastX DNA_TcMar-Tc1 253069 253344 29 - . . scaffold1 GLEAN mRNA 239740 257002 0.998426 - . ID=CGI_10013473; scaffold541 WUBlastX LTR_Gypsy 600685 601701 132 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-BovB 1031164 1032126 117 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX DNA_Sola 100274 100378 37 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX DNA_Sola 101008 101508 185 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_DIRS 254258 255076 369 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LTR_Ngaro 36660 37610 282 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_TcMar-Tc1 232841 233431 170 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_TcMar-Tc1 233448 233489 31 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_TcMar-Tc1 233589 233654 42 + . . . . . -1 -1 -1 . . . scaffold33530 WUBlastX LINE_L1-Tx1 9339 10625 86 - . . . . . -1 -1 -1 . . . scaffold40606 WUBlastX DNA_Academ 89067 89936 423 + . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Pao 66526 66654 74 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold85 WUBlastX LINE_L1-Tx1 288918 289199 64 - . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LTR_Gypsy 100358 100996 485 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_DIRS 583578 584033 103 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Pao 131429 131680 58 - . . . . . -1 -1 -1 . . . scaffold1575 WUBlastX LTR_Gypsy 68572 68670 23 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Maverick 222114 222893 59 - . . scaffold1703 GLEAN mRNA 215396 234951 0.309503 + . ID=CGI_10023049; scaffold1209 WUBlastX LTR_Gypsy 117200 118390 461 - . . scaffold1209 GLEAN mRNA 106847 123923 0.38603 - . ID=CGI_10007967; scaffold1119 WUBlastX LTR_Gypsy 170581 171435 442 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold38736 WUBlastX DNA_Harbinger 52233 52823 370 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_L1 84265 84522 24 - . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold36334 WUBlastX LINE_RTE-X 10589 11149 238 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_L1-Tx1 162102 162326 24 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_Kolobok-IS4 4844 5017 69 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_Penelope 285241 285636 140 + . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_RTE-BovB 161780 161872 32 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LTR_Pao 51546 52007 324 - . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LTR_Pao 51980 52366 171 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX LTR_Ngaro 120698 121786 289 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Maverick 209063 209113 24 - . . scaffold31 GLEAN mRNA 202867 210562 0.991871 - . ID=CGI_10013561; scaffold485 WUBlastX LINE_RTE-X 868449 868487 30 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Gypsy 253278 253439 61 + . . . . . -1 -1 -1 . . . scaffold633 WUBlastX LINE_L1-Tx1 20207 21493 425 + . . scaffold633 GLEAN mRNA 18015 46855 0.77454 - . ID=CGI_10004268; scaffold502 WUBlastX DNA_TcMar-Tc1 455005 455100 53 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_TcMar-Tc1 455106 455951 383 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 11144 11656 138 - . . . . . -1 -1 -1 . . . C30988 WUBlastX LINE_L2 7090 7692 263 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_IS4EU 462212 462400 105 - . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_RTE-BovB 318390 319802 517 + . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Ngaro 10372 11739 528 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Ngaro 11727 11930 90 - . . . . . -1 -1 -1 . . . C33592 WUBlastX DNA_Zator 10537 12474 699 - . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_CR1-L2 17593 17871 60 - . . scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold820 WUBlastX LTR_Gypsy 10314 11969 655 - . . . . . -1 -1 -1 . . . C33308 WUBlastX DNA_Harbinger 11627 11845 91 + . . . . . -1 -1 -1 . . . C33308 WUBlastX DNA_Harbinger 12390 12677 281 + . . . . . -1 -1 -1 . . . C33308 WUBlastX DNA_Harbinger 12755 13246 327 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_RTE-X 54515 55552 309 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold370 WUBlastX LINE_L1-Tx1 981322 982062 140 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 979841 980464 522 + . . . . . -1 -1 -1 . . . scaffold41660 WUBlastX LINE_L1-Tx1 113202 113543 151 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 113831 114370 240 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 114369 114926 263 - . . scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold700 WUBlastX LTR_DIRS 109190 109267 32 - . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LTR_DIRS 109242 109490 120 - . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Gypsy 935539 936081 27 - . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold1091 WUBlastX LTR_Gypsy 331 1191 730 - . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LINE_RTE-X 14956 15042 31 - . . . . . -1 -1 -1 . . . scaffold41896 WUBlastX LINE_L2 28103 28279 72 + . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_CR1 123253 123732 313 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_CR1 241913 243073 874 - . . . . . -1 -1 -1 . . . scaffold1851 WUBlastX LTR_Gypsy 102905 104500 910 + . . scaffold1851 GLEAN mRNA 98297 105350 0.387171 - . ID=CGI_10005104; scaffold290 WUBlastX LTR_Gypsy 210032 210481 76 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_L1-Tx1 243441 244601 837 - . . scaffold378 GLEAN mRNA 222180 244864 0.996816 + . ID=CGI_10017641; scaffold1532 WUBlastX LINE_RTE-X 263522 265369 708 + . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LINE_CR1 572211 572372 73 + . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LTR_Gypsy-Cigr 192742 193185 50 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LTR_Gypsy-Cigr 339685 340017 68 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 10324 10494 23 - . . scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold1484 WUBlastX DNA_Merlin 336890 336967 28 + . . . . . -1 -1 -1 . . . scaffold42236 WUBlastX DNA_hAT 127381 127524 47 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold1805 WUBlastX LINE_CR1 173970 174341 22 + . . . . . -1 -1 -1 . . . scaffold487 WUBlastX LINE_RTE-BovB 7655 7771 27 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX DNA_MuDR 174038 174175 58 + . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LTR_Pao 71432 71608 35 - . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LTR_Gypsy 100660 101385 35 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 300160 300402 21 - . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LTR_Gypsy 3244 3399 54 - . . . . . -1 -1 -1 . . . scaffold39346 WUBlastX LTR_Gypsy 33558 33782 45 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 9718 10161 48 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_L2 68575 68619 25 + . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX DNA_Crypton 386345 386719 59 - . . scaffold1896 GLEAN mRNA 382396 395686 0.990814 - . ID=CGI_10019649; scaffold1018 WUBlastX LTR_DIRS 518998 519279 28 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_Jockey 510626 511141 36 - . . . . . -1 -1 -1 . . . scaffold1100 WUBlastX LTR_Gypsy 98671 98745 29 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_Gypsy 47136 47276 66 + . . . . . -1 -1 -1 . . . scaffold1194 WUBlastX LINE_I 3293 3886 23 - . . scaffold1194 GLEAN mRNA 3134 3478 0.999661 - . ID=CGI_10001327; scaffold1825 WUBlastX DNA_hAT-hATw 277738 278493 65 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX RC_Helitron 151266 151904 23 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX RC_Helitron 183146 183397 87 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Jockey 245002 245727 26 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LINE_L1-Tx1 486683 486748 20 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LINE_L1-Tx1 486741 486881 69 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_L1 3511 3978 29 + . . scaffold867 GLEAN mRNA 3265 13655 0.999351 + . ID=CGI_10026210; scaffold1817 WUBlastX LINE_L1-Tx1 17640 18032 45 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold204 WUBlastX DNA_Kolobok-Hyd 853262 853729 28 - . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; C33172 WUBlastX LTR_Ngaro 13393 13551 59 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LINE_L2 13010 13333 46 + . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold681 WUBlastX LINE_L2 295699 295863 28 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LINE_L2 445026 445388 42 - . . . . . -1 -1 -1 . . . scaffold921 WUBlastX DNA_TcMar-Marin 712 789 30 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_MuDR 106346 106558 43 - . . scaffold1132 GLEAN mRNA 105539 106657 0.995556 - . ID=CGI_10023312; scaffold507 WUBlastX LINE_Penelope 354607 355149 42 + . . scaffold507 GLEAN mRNA 353542 355725 0.986298 + . ID=CGI_10019097; scaffold873 WUBlastX LINE_Penelope 160482 160613 63 + . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX LINE_Penelope 21697 21834 51 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_Penelope 42791 42970 65 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LINE_RTE-BovB 299576 299725 21 - . . scaffold62 GLEAN mRNA 299267 303352 0.993887 - . ID=CGI_10015717; scaffold793 WUBlastX LINE_Penelope 71678 71953 42 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold681 WUBlastX LINE_Penelope 389974 390135 56 - . . . . . -1 -1 -1 . . . scaffold261 WUBlastX LINE_RTE-BovB 4868 5023 52 - . . . . . -1 -1 -1 . . . scaffold287 WUBlastX LINE_RTE-X 66523 66894 62 - . . . . . -1 -1 -1 . . . scaffold1411 WUBlastX LINE_RTE-X 80049 80375 58 + . . scaffold1411 GLEAN mRNA 68337 88337 0.750194 - . ID=CGI_10009186; scaffold672 WUBlastX LINE_RTE-X 256358 256624 31 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX LINE_RTE-X 250718 250933 36 + . . . . . -1 -1 -1 . . . scaffold1797 WUBlastX LINE_RTE-X 21599 21829 63 - . . . . . -1 -1 -1 . . . scaffold912 WUBlastX LINE_RTE-X 53918 54238 45 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_RTE-X 248986 249303 39 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 1413540 1413824 49 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_RTE-BovB 504954 505181 66 + . . scaffold885 GLEAN mRNA 501162 507823 1 + . ID=CGI_10025210; scaffold42704 WUBlastX DNA_Maverick 67780 67869 47 - . . . . . -1 -1 -1 . . . scaffold33064 WUBlastX LINE_Proto2 1711 1803 28 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LINE_RTE-X 593714 594271 41 + . . . . . -1 -1 -1 . . . C32512 WUBlastX LINE_RTE-X 6405 6641 53 + . . C32512 GLEAN mRNA 877 9878 0.651135 + . ID=CGI_10000906; scaffold664 WUBlastX LTR_Copia 520094 520231 25 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_RTE-X 259671 259946 26 + . . . . . -1 -1 -1 . . . scaffold775 WUBlastX LINE_RTE-X 54521 54727 41 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_TcMar-Tigge 58169 58285 50 - . . . . . -1 -1 -1 . . . scaffold1195 WUBlastX DNA_Sola 41613 41780 57 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX DNA_Sola 374697 374870 77 - . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LTR_DIRS 20661 21020 22 + . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy-Cigr 49632 49835 43 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 214628 214714 27 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_L1-Tx1 35092 35376 34 - . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LINE_L1-Tx1 129010 129258 44 + . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LTR_Pao 217354 217686 65 - . . . . . -1 -1 -1 . . . scaffold617 WUBlastX DNA_hAT 128440 128769 69 - . . scaffold617 GLEAN mRNA 125086 132906 0.990104 - . ID=CGI_10012725; scaffold1711 WUBlastX LINE_L2 358969 359274 60 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_CR1-L2 928046 928261 44 + . . scaffold469 GLEAN mRNA 925100 941633 0.564574 + . ID=CGI_10024703; scaffold100 WUBlastX LINE_L2-Hydra 107147 107290 20 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_CR1 337542 337790 28 - . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1737 WUBlastX LINE_CR1 25965 26213 28 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_L2 235216 235308 39 - . . scaffold950 GLEAN mRNA 224684 252187 0.638871 - . ID=CGI_10022925; scaffold29316 WUBlastX LINE_L2 3554 3958 23 - . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 79933 80457 48 - . . . . . -1 -1 -1 . . . scaffold1893 WUBlastX DNA_IS4EU 204180 204719 50 - . . . . . -1 -1 -1 . . . C18938 WUBlastX DNA_IS4EU 128 667 50 + . . . . . -1 -1 -1 . . . scaffold133 WUBlastX DNA_Harbinger 98564 98863 47 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 490597 491010 84 + . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_Penelope 171500 171964 46 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_Penelope 72370 72702 59 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1 42977 43246 32 - . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX LINE_L1 32565 33176 26 + . . . . . -1 -1 -1 . . . C4959 WUBlastX LINE_L1-Tx1 1 120 65 + . . . . . -1 -1 -1 . . . scaffold912 WUBlastX LINE_L1 36314 36430 101 - . . scaffold912 GLEAN mRNA 34749 48869 0.492255 - . ID=CGI_10002926; scaffold1845 WUBlastX LINE_L1 144210 144638 65 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-BovB 360720 360938 43 - . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_L1-Tx1 266914 267147 31 + . . . . . -1 -1 -1 . . . scaffold308 WUBlastX LINE_CR1 278670 278804 66 + . . . . . -1 -1 -1 . . . C24036 WUBlastX LTR_Copia 1512 1583 20 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_L2 192030 192215 35 - . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold934 WUBlastX LTR_DIRS 264246 264545 84 + . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold25910 WUBlastX LTR_Gypsy 133 501 39 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Gypsy 173183 173551 89 - . . . . . -1 -1 -1 . . . scaffold41346 WUBlastX RC_Helitron 33407 33772 89 - . . scaffold41346 GLEAN mRNA 32052 37243 0.990251 - . ID=CGI_10004999; scaffold90 WUBlastX DNA_hAT-hATw 251924 252334 47 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_L1 244612 244797 74 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_Penelope 232267 232467 47 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_MuDR 796035 796352 86 - . . scaffold1301 GLEAN mRNA 795655 798380 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 796035 796352 86 - . . scaffold1301 GLEAN mRNA 781075 819646 0.518044 + . ID=CGI_10027743; scaffold532 WUBlastX DNA_TcMar-Marin 263732 263869 93 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_TcMar-Marin 244686 244787 28 + . . . . . -1 -1 -1 . . . scaffold1586 WUBlastX DNA_TcMar-Fot1 75781 76161 84 - . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 35308 35676 85 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 872752 872919 81 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 363720 364025 43 - . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX LINE_CR1-L2 158654 158947 69 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Pao 78031 78621 37 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Pao 294946 295029 20 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Pao 295119 295301 35 + . . . . . -1 -1 -1 . . . scaffold1371 WUBlastX LTR_Gypsy 104800 105288 71 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX DNA_TcMar-Fot1 96244 96516 112 + . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX DNA_MuDR 143376 143660 30 - . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_RTE-X 323319 323621 70 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_RTE-X 68382 68603 31 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 328923 329060 63 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LINE_L1-Tx1 134402 134719 53 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_CR1 394293 394451 54 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_L2 612651 613325 63 - . . scaffold343 GLEAN mRNA 606783 616118 0.949663 + . ID=CGI_10021767; scaffold39268 WUBlastX LINE_L2 17873 18445 101 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold1697 WUBlastX DNA_Crypton 58260 58361 21 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX DNA_Crypton 58417 58671 56 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 58745 58828 45 + . . . . . -1 -1 -1 . . . scaffold724 WUBlastX DNA_IS4EU 110738 111052 112 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_IS4EU 492649 492963 112 - . . . . . -1 -1 -1 . . . scaffold31784 WUBlastX DNA_IS4EU 518 832 112 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L1 36692 36865 54 - . . . . . -1 -1 -1 . . . C30188 WUBlastX LINE_RTE-X 4657 4938 73 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LINE_RTE-X 107747 108034 61 - . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LINE_RTE-X 186225 186533 70 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX LINE_L2 350369 350545 81 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 148466 148678 20 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_Gypsy 363937 364149 20 + . . . . . -1 -1 -1 . . . scaffold36202 WUBlastX LTR_Ngaro 20871 21314 85 - . . scaffold36202 GLEAN mRNA 3245 23503 0.999232 + . ID=CGI_10001812; scaffold707 WUBlastX DNA_Harbinger 20811 21170 93 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_L1 707391 707513 20 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold257 WUBlastX LINE_L1-Tx1 28156 28407 53 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_CR1-L2 48579 48740 95 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_Harbinger 34699 34911 53 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_Harbinger 35496 35675 40 + . . . . . -1 -1 -1 . . . C30864 WUBlastX LINE_L1 3962 4183 63 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_Ngaro 58840 58947 31 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-X 186678 187031 94 - . . scaffold365 GLEAN mRNA 162342 187868 0.996603 - . ID=CGI_10022722; scaffold113 WUBlastX LINE_RTE-X 54662 54838 82 + . . scaffold113 GLEAN mRNA 53720 57757 0.859957 + . ID=CGI_10021283; scaffold493 WUBlastX LINE_RTE-X 444 713 77 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1 22453 23190 88 + . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LTR_DIRS 74425 74988 77 - . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LTR_Ngaro 40775 40930 23 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 141736 142113 83 - . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LTR_Gypsy 543467 543565 92 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX LINE_Penelope 9187 9375 21 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L1 114423 114683 131 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L1-Tx1 457018 457248 85 - . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_CR1-L2 126065 126604 76 + . . . . . -1 -1 -1 . . . scaffold771 WUBlastX LINE_Tad1? 223087 223641 114 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 107530 107769 28 + . . . . . -1 -1 -1 . . . C26402 WUBlastX LINE_L1 3162 3269 57 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_IS4EU 611052 611348 70 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LINE_RTE-BovB 116151 116276 26 + . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-X 229894 230148 29 + . . . . . -1 -1 -1 . . . C21812 WUBlastX LINE_CR1-L2 968 1090 77 + . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX DNA_PiggyBac 92469 92570 79 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Pao 94663 94899 156 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Ngaro 141079 141423 93 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 431481 431660 89 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_TcMar-Tc1 9739 10431 79 - . . . . . -1 -1 -1 . . . scaffold43696 WUBlastX LINE_L1-Tx1 93086 93580 99 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 478260 479111 175 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LTR_Gypsy 479129 479572 463 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold354 WUBlastX LTR_Gypsy 1026460 1026993 254 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-X 67876 69735 771 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Gypsy 873037 874620 613 - . . . . . -1 -1 -1 . . . C32054 WUBlastX LTR_Gypsy 822 2003 904 + . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_CR1-L2 126065 126379 80 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_IS4EU 489268 489465 99 + . . scaffold601 GLEAN mRNA 483357 489501 0.678522 + . ID=CGI_10026830; scaffold38920 WUBlastX DNA_hAT-Ac 62921 63262 170 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Ngaro 3227 3382 77 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Ngaro 3457 3717 83 + . . . . . -1 -1 -1 . . . scaffold409 WUBlastX DNA_TcMar-Tc1 41955 42422 71 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-X 343148 343972 170 + . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 85290 85388 65 + . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 85800 86195 160 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Ngaro 104608 105297 135 - . . . . . -1 -1 -1 . . . C23428 WUBlastX LTR_Ngaro 2166 2246 37 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_Penelope 404482 404580 41 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 405408 405581 106 - . . scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold1097 WUBlastX LINE_RTE-X 796960 797379 22 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold150 WUBlastX DNA_Harbinger 393100 393567 104 + . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_L1-Tx1 162940 163485 92 + . . . . . -1 -1 -1 . . . scaffold29846 WUBlastX LINE_L1-Tx1 595 1089 85 + . . . . . -1 -1 -1 . . . scaffold1524 WUBlastX LINE_L2 174837 175109 106 - . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 233874 234014 57 - . . . . . -1 -1 -1 . . . scaffold35268 WUBlastX DNA_TcMar-Marin 16063 16410 96 - . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LINE_RTE-X 57940 58461 111 + . . scaffold41884 GLEAN mRNA 50798 64593 0.351321 + . ID=CGI_10005780; scaffold485 WUBlastX LINE_RTE-BovB 738404 738544 50 + . . scaffold485 GLEAN mRNA 737910 749557 0.981296 + . ID=CGI_10024192; scaffold485 WUBlastX LINE_RTE-BovB 738404 738544 50 + . . scaffold485 GLEAN mRNA 734638 750215 1 - . ID=CGI_10024191; scaffold1703 WUBlastX LTR_Pao 179438 179806 132 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Harbinger 368498 368737 176 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Harbinger 368774 369829 1017 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L1-Tx1 1093052 1095373 978 + . . scaffold962 GLEAN mRNA 1090381 1096840 0.999611 + . ID=CGI_10027684; scaffold1831 WUBlastX LINE_L1-Tx1 34296 34895 160 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 34296 34895 160 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold351 WUBlastX DNA_Maverick 284990 285430 235 + . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX LINE_L2 49458 49541 25 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 136819 136902 23 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold43182 WUBlastX LTR_Gypsy 167708 167899 32 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold924 WUBlastX LTR_Ngaro 70105 70161 25 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX DNA_Maverick 88920 89399 183 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-X 633442 633792 88 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_CR1 26394 27041 597 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L2 630235 630903 168 + . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LTR_Gypsy 453155 453481 48 + . . scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold992 WUBlastX LTR_Gypsy 182719 183213 168 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 68241 68522 111 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1 156715 156816 34 + . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_CR1-L2 16515 16655 38 - . . . . . -1 -1 -1 . . . scaffold715 WUBlastX LTR_Gypsy 64624 64809 35 - . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_Penelope 60175 60624 124 - . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold1619 WUBlastX LINE_RTE-BovB 236335 236910 77 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_RTE-X 299578 299862 128 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_RTE-X 300015 300170 47 + . . . . . -1 -1 -1 . . . C26236 WUBlastX LINE_CR1-L2 868 1425 159 - . . . . . -1 -1 -1 . . . C31370 WUBlastX LTR_Gypsy-Cigr 7620 8201 181 - . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L2 312426 312563 51 - . . scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold964 WUBlastX LTR_Ngaro 225423 225890 157 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold298 WUBlastX LINE_L2 519156 519536 170 + . . scaffold298 GLEAN mRNA 501146 527362 0.635848 + . ID=CGI_10018836; scaffold1097 WUBlastX LINE_L2 30718 31359 166 - . . . . . -1 -1 -1 . . . scaffold37438 WUBlastX LINE_L1-Tx1 40694 41395 86 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy 40221 41759 839 + . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy 42266 43462 855 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L1-Tx1 556121 556921 444 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1-Tx1 556999 557226 47 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1-Tx1 557581 558756 691 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1-Tx1 558734 559573 174 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold534 WUBlastX DNA_hAT-Tip100 114513 114731 51 + . . . . . -1 -1 -1 . . . scaffold1086 WUBlastX LINE_RTE-X 102103 102522 206 - . . scaffold1086 GLEAN mRNA 71811 104849 0.15447 + . ID=CGI_10021931; scaffold446 WUBlastX LINE_Jockey 5031 6599 93 - . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX LTR_DIRS 7654 8367 33 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LTR_DIRS 177252 177845 195 + . . . . . -1 -1 -1 . . . scaffold258 WUBlastX LINE_L2 426716 427474 176 - . . . . . -1 -1 -1 . . . scaffold1460 WUBlastX LINE_RTE-X 4377 4559 50 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-X 167392 167961 168 + . . scaffold164 GLEAN mRNA 165506 168961 1 - . ID=CGI_10021852; C30458 WUBlastX LINE_L1-Tx1 5579 5905 57 + . . C30458 GLEAN mRNA 986 6010 1 - . ID=CGI_10000625; scaffold737 WUBlastX LINE_L2 77908 78375 38 + . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1 13744 13938 37 - . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX DNA_TcMar-Tc1 26065 26328 97 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LTR_Gypsy 20057 20329 69 + . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX LTR_Pao 129175 129258 58 - . . . . . -1 -1 -1 . . . scaffold1075 WUBlastX LTR_Pao 129420 129731 101 - . . . . . -1 -1 -1 . . . C26674 WUBlastX LINE_RTE-X 4 582 195 + . . . . . -1 -1 -1 . . . scaffold935 WUBlastX LINE_RTE-BovB 77210 77644 190 + . . . . . -1 -1 -1 . . . scaffold935 WUBlastX LINE_RTE-BovB 78430 78471 22 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 31916 32143 65 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_L1 529383 529454 21 + . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX LINE_L1 329745 330248 39 - . . . . . -1 -1 -1 . . . scaffold1203 WUBlastX LINE_RTE-X 144260 144346 21 + . . scaffold1203 GLEAN mRNA 143882 144388 0.648541 + . ID=CGI_10010428; scaffold1203 WUBlastX LINE_RTE-X 146242 146472 70 + . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX DNA_Sola 89450 90907 187 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Pao 109712 109870 145 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Foamy 497005 497760 103 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX DNA_Crypton 41641 42270 183 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_Crypton 36893 37609 177 - . . scaffold794 GLEAN mRNA 34460 38499 0.999922 - . ID=CGI_10017134; scaffold206 WUBlastX LTR_Ngaro 251599 252087 249 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Ngaro 85730 86422 157 - . . . . . -1 -1 -1 . . . C34010 WUBlastX LTR_Ngaro 13657 13932 181 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 229880 230305 124 - . . . . . -1 -1 -1 . . . scaffold750 WUBlastX LTR_Gypsy 445018 445497 235 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 129060 129560 278 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold714 WUBlastX LINE_L1 181006 181254 76 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 923070 923459 107 + . . . . . -1 -1 -1 . . . scaffold1427 WUBlastX DNA_Maverick 66811 67440 242 + . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LTR_Gypsy-Cigr 128397 129095 202 - . . scaffold305 GLEAN mRNA 114232 133246 0.986225 - . ID=CGI_10019117; scaffold58 WUBlastX LTR_Gypsy 258371 259030 630 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1104771 1105106 59 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_L1-Tx1 1105766 1106479 67 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 1182900 1183280 118 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-X 238469 239020 133 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L1-Tx1 88622 89416 168 + . . scaffold42674 GLEAN mRNA 75951 89776 0.488756 + . ID=CGI_10007441; scaffold67 WUBlastX LTR_Ngaro 234689 235027 136 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1157153 1157422 65 - . . . . . -1 -1 -1 . . . scaffold21736 WUBlastX LTR_Gypsy 3 221 149 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LTR_Ngaro 460689 460904 120 - . . . . . -1 -1 -1 . . . scaffold1477 WUBlastX DNA_IS4EU 39831 40241 178 - . . . . . -1 -1 -1 . . . scaffold1477 WUBlastX DNA_IS4EU 40253 40492 109 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_RTE-X 180788 181768 214 - . . scaffold160 GLEAN mRNA 177779 208943 0.919015 - . ID=CGI_10020578; scaffold177 WUBlastX RC_Helitron 191012 192298 464 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX RC_Helitron 192265 192444 43 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX RC_Helitron 192453 192695 207 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX RC_Helitron 192877 193548 440 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX RC_Helitron 193824 196466 1179 + . . . . . -1 -1 -1 . . . scaffold603 WUBlastX LINE_L1 20352 20453 23 - . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold1352 WUBlastX LINE_RTE-X 402330 402494 49 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold40526 WUBlastX LTR_DIRS 68239 68370 24 - . . . . . -1 -1 -1 . . . scaffold40526 WUBlastX LTR_DIRS 68373 68969 178 - . . . . . -1 -1 -1 . . . scaffold894 WUBlastX DNA_hAT-Tip100 152465 153079 303 - . . scaffold894 GLEAN mRNA 150089 157261 0.544755 - . ID=CGI_10008547; scaffold146 WUBlastX LINE_L1-Tx1 624787 625665 118 - . . scaffold146 GLEAN mRNA 617556 637446 0.912862 - . ID=CGI_10024915; scaffold39790 WUBlastX LINE_CR1-L2 4377 5051 304 + . . . . . -1 -1 -1 . . . scaffold38978 WUBlastX DNA_Harbinger 8435 8779 164 - . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 8435 8779 164 - . . scaffold38978 GLEAN mRNA 7539 8521 0.655792 - . ID=CGI_10003127; scaffold1869 WUBlastX LINE_L1-Tx1 100631 101194 192 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX LINE_L1-Tx1 101152 101376 73 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_RTE-X 217431 217862 126 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LINE_L1-Tx1 29851 30201 160 + . . . . . -1 -1 -1 . . . scaffold110 WUBlastX LINE_RTE-BovB 91332 91718 76 + . . . . . -1 -1 -1 . . . C28906 WUBlastX LINE_RTE-X 4561 6000 155 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_DIRS 581280 582140 266 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 203520 203657 30 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX LTR_Gypsy 128918 129730 327 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX DNA_Harbinger 168882 169604 314 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 379442 380140 54 - . . . . . -1 -1 -1 . . . scaffold837 WUBlastX DNA_TcMar-Tc1 21229 21687 193 - . . . . . -1 -1 -1 . . . scaffold39508 WUBlastX LINE_RTE-X 39777 40436 305 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_L1-Tx1 385890 386540 338 + . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_L1-Tx1 45469 46158 142 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Sola 297126 297584 76 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Sola 298567 299319 150 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_Sola 614032 614421 147 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Marin 260045 260371 73 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX DNA_Harbinger 96274 96546 124 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX DNA_Harbinger 96540 96914 249 + . . . . . -1 -1 -1 . . . scaffold569 WUBlastX LINE_L2 152800 153687 442 - . . scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold43686 WUBlastX DNA_hAT-hATw 121563 122960 441 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 182384 182896 138 + . . . . . -1 -1 -1 . . . scaffold1801 WUBlastX LTR_Ngaro 71409 72203 460 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_L1-Tx1 252182 253861 356 - . . . . . -1 -1 -1 . . . C25486 WUBlastX LTR_Gypsy 412 1269 425 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LINE_CR1 39572 39976 104 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LTR_Gypsy 135706 136098 232 - . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX LINE_Penelope 45094 45750 163 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_IS4EU 11163 11291 31 + . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold42880 WUBlastX DNA_Maverick 58034 58120 39 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_RTE-X 113416 114117 43 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX DNA_TcMar-Tc1 261775 262212 313 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold1869 WUBlastX DNA_TcMar-Tc1 153052 153261 121 - . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX DNA_TcMar-Tc1 153255 153713 227 - . . . . . -1 -1 -1 . . . scaffold286 WUBlastX DNA_TcMar-Tc1 75998 76087 37 - . . scaffold286 GLEAN mRNA 70101 79780 0.990881 + . ID=CGI_10015958; scaffold286 WUBlastX DNA_TcMar-Tc1 76530 76964 107 - . . scaffold286 GLEAN mRNA 70101 79780 0.990881 + . ID=CGI_10015958; scaffold1214 WUBlastX LTR_Ngaro 250023 250439 235 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LTR_Ngaro 250760 251122 162 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1532 WUBlastX LTR_Gypsy-Troyk 1110882 1111346 283 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy-Troyk 1112151 1112486 151 - . . scaffold1532 GLEAN mRNA 1112130 1112501 0.979648 - . ID=CGI_10028281; scaffold1845 WUBlastX RC_Helitron 290242 290892 209 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX RC_Helitron 290898 291494 246 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX RC_Helitron 291852 291899 37 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX RC_Helitron 292490 292600 28 + . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 156975 157637 95 - . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold65 WUBlastX LINE_RTE-X 127020 127184 39 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX DNA_TcMar-Tc1 255586 255795 145 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold885 WUBlastX DNA_Sola 917409 918281 440 + . . . . . -1 -1 -1 . . . C23772 WUBlastX DNA_Crypton 761 1438 163 - . . . . . -1 -1 -1 . . . C23772 WUBlastX DNA_Crypton 1600 2217 336 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX DNA_Crypton 291914 292531 336 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX DNA_Crypton 292693 293370 163 + . . . . . -1 -1 -1 . . . scaffold645 WUBlastX DNA_Crypton 36836 37360 317 + . . . . . -1 -1 -1 . . . scaffold645 WUBlastX DNA_Crypton 37420 37860 241 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_IS4EU 128181 128633 202 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_IS4EU 128862 129701 306 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_L1-Tx1 194711 195166 187 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold1164 WUBlastX LTR_Pao 74029 75300 563 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_Gypsy-Cigr 81758 81922 40 + . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX LTR_Gypsy 84665 86323 474 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold433 WUBlastX LTR_Ngaro 338540 339715 821 + . . scaffold433 GLEAN mRNA 321041 347867 0.999675 + . ID=CGI_10027064; scaffold1066 WUBlastX LTR_Gypsy 266583 267032 94 - . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L1 301342 301686 104 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 547725 547823 56 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Pao 228915 229103 37 + . . . . . -1 -1 -1 . . . C22998 WUBlastX LINE_L1 126 395 30 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_CR1 49695 49787 33 + . . . . . -1 -1 -1 . . . scaffold930 WUBlastX LINE_CR1-L2 252174 252434 67 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LINE_CR1-L2 129505 130002 35 + . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_L2 223195 223326 27 + . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LINE_L2 41672 41845 65 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LINE_L2-Hydra 43088 43381 63 - . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LTR_Gypsy-Cigr 166025 166165 35 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 953628 953759 33 + . . . . . -1 -1 -1 . . . scaffold1080 WUBlastX DNA_En-Spm 171191 171313 38 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc1 858254 858568 48 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc1 858772 858849 20 + . . . . . -1 -1 -1 . . . scaffold43686 WUBlastX LINE_L2 175018 175206 70 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold37532 WUBlastX LINE_L2 44119 44364 68 - . . . . . -1 -1 -1 . . . scaffold36202 WUBlastX LTR_Ngaro 20747 20965 49 - . . scaffold36202 GLEAN mRNA 3245 23503 0.999232 + . ID=CGI_10001812; scaffold209 WUBlastX LTR_DIRS 205412 205570 37 - . . . . . -1 -1 -1 . . . C2451 WUBlastX LTR_DIRS 3 101 64 - . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LTR_DIRS 144103 144312 53 + . . scaffold43782 GLEAN mRNA 143682 159372 0.674769 + . ID=CGI_10012367; scaffold38256 WUBlastX LTR_Gypsy 3510 3791 27 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LTR_Gypsy 815654 815860 67 + . . scaffold678 GLEAN mRNA 797592 830433 0.957761 + . ID=CGI_10026382; scaffold316 WUBlastX LTR_Gypsy 16790 17140 40 + . . scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold43242 WUBlastX DNA_Harbinger 18705 18881 77 - . . . . . -1 -1 -1 . . . scaffold643 WUBlastX DNA_IS4EU 25388 25579 65 - . . . . . -1 -1 -1 . . . scaffold908 WUBlastX DNA_IS4EU 340275 340457 44 + . . . . . -1 -1 -1 . . . scaffold908 WUBlastX DNA_IS4EU 340454 340630 36 + . . . . . -1 -1 -1 . . . scaffold322 WUBlastX DNA_Kolobok-IS4 198251 198454 59 + . . . . . -1 -1 -1 . . . C30216 WUBlastX DNA_hAT-Tip100 3161 3427 56 + . . . . . -1 -1 -1 . . . scaffold37252 WUBlastX LINE_L1 17861 18187 38 + . . . . . -1 -1 -1 . . . scaffold1304 WUBlastX LINE_L1 31695 31904 39 - . . scaffold1304 GLEAN mRNA 18393 35543 1 + . ID=CGI_10003862; scaffold363 WUBlastX LINE_L1-Tx1 68152 68247 22 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L1 10697 10900 22 - . . scaffold413 GLEAN mRNA 9716 19114 0.940957 - . ID=CGI_10022791; scaffold485 WUBlastX LINE_L1 856822 856959 41 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LINE_L1 295424 295714 33 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1 733588 734076 35 + . . . . . -1 -1 -1 . . . scaffold41082 WUBlastX LINE_L1 56688 57128 88 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LINE_L1 116973 117539 68 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L2 328737 328940 48 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_L1 290684 290791 26 + . . . . . -1 -1 -1 . . . scaffold37358 WUBlastX LINE_I 40104 40397 67 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX DNA_TcMar-Tc1 139121 139360 48 - . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX DNA_TcMar-Marin 189528 189788 54 - . . . . . -1 -1 -1 . . . scaffold784 WUBlastX DNA_TcMar-ISRm1 617627 617794 64 + . . . . . -1 -1 -1 . . . C26860 WUBlastX DNA_TcMar-Tc1 55 150 34 + . . C26860 GLEAN mRNA 25 285 0.999372 + . ID=CGI_10000331; scaffold208 WUBlastX DNA_TcMar-Marin 116088 116228 31 + . . scaffold208 GLEAN mRNA 115161 117315 1 - . ID=CGI_10010026; scaffold502 WUBlastX LINE_Penelope 790770 791084 52 - . . scaffold502 GLEAN mRNA 778874 801211 0.91725 + . ID=CGI_10024346; scaffold42656 WUBlastX LINE_Penelope 146299 146556 41 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_Penelope 227276 227392 46 + . . scaffold43660 GLEAN mRNA 226088 237077 1 - . ID=CGI_10011669; scaffold1134 WUBlastX LINE_RTE-BovB 75491 75637 55 - . . scaffold1134 GLEAN mRNA 49795 76853 0.922734 + . ID=CGI_10004507; scaffold511 WUBlastX LINE_RTE-BovB 14892 15008 26 - . . . . . -1 -1 -1 . . . scaffold42892 WUBlastX LINE_RTE-X 2227 2358 33 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_RTE-BovB 52276 52467 71 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold729 WUBlastX LINE_RTE-X 4329 4499 46 + . . . . . -1 -1 -1 . . . scaffold38714 WUBlastX LINE_RTE-X 51872 52177 25 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_RTE-BovB 29608 29733 45 - . . . . . -1 -1 -1 . . . scaffold40346 WUBlastX DNA_Maverick 82028 82261 25 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_RTE-X 237005 237217 42 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LINE_RTE-X 401481 401564 31 - . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-BovB 176708 177016 76 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX LINE_RTE-X 160705 160911 24 - . . scaffold483 GLEAN mRNA 152695 165153 0.98402 - . ID=CGI_10007752; scaffold432 WUBlastX LINE_RTE-X 133202 133372 25 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_RTE-X 128684 128860 72 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_RTE-X 363228 363422 77 + . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LINE_RTE-X 130264 130398 56 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 650955 651056 52 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 562425 562577 41 - . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold443 WUBlastX LTR_ERV-Foamy 706310 706378 23 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LINE_L1-Tx1 236758 236913 57 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_L1-Tx1 170164 170556 31 - . . scaffold43660 GLEAN mRNA 158768 189009 0.999991 - . ID=CGI_10011666; scaffold1720 WUBlastX LINE_L1-Tx1 137925 138071 48 + . . . . . -1 -1 -1 . . . scaffold890 WUBlastX LINE_CR1 290613 290780 70 - . . scaffold890 GLEAN mRNA 287435 312343 0.999997 - . ID=CGI_10014480; scaffold544 WUBlastX LINE_RTE-BovB 129929 130291 82 - . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_L2 427510 427731 70 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy-Cigr 7880 8071 98 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_Gypsy-Cigr 821676 822080 76 - . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LTR_Gypsy-Cigr 9373 9696 93 - . . . . . -1 -1 -1 . . . scaffold36 WUBlastX LTR_Gypsy 1709 2458 36 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_Harbinger 149223 149390 70 + . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LINE_I 42641 42874 67 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX DNA_Harbinger 778926 779090 57 + . . scaffold54 GLEAN mRNA 778899 780884 0.987135 + . ID=CGI_10023696; scaffold5 WUBlastX DNA_Harbinger 40802 40966 57 + . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 265614 265751 21 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 547112 547294 22 - . . . . . -1 -1 -1 . . . scaffold38804 WUBlastX DNA_TcMar-Tc1 56077 56241 28 + . . . . . -1 -1 -1 . . . scaffold36218 WUBlastX DNA_Maverick 7083 7220 29 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 396020 396133 39 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LTR_ERV1 20506 20634 45 - . . scaffold43242 GLEAN mRNA 20616 21020 0.593326 - . ID=CGI_10009542; scaffold1631 WUBlastX LINE_L2 26846 27208 50 - . . . . . -1 -1 -1 . . . scaffold40438 WUBlastX LINE_L2 9407 9889 68 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LTR_Ngaro 53998 54639 25 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LTR_Gypsy 113592 114668 72 - . . . . . -1 -1 -1 . . . scaffold982 WUBlastX DNA_Harbinger 17034 17195 79 - . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_IS4EU 20739 21101 51 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 223959 224192 29 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX DNA_Kolobok-IS4 187020 187265 54 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX DNA_IS4EU 123305 123694 96 - . . scaffold1143 GLEAN mRNA 121955 124624 0.796524 - . ID=CGI_10009141; scaffold1469 WUBlastX LINE_R2-Hero 311095 311367 73 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_Penelope 719621 719788 37 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_RTE-X 717266 717631 63 - . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LINE_RTE-X 106562 106759 47 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 132031 132222 65 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LINE_RTE-X 71872 72126 56 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Ngaro 114004 114165 88 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_L1-Tx1 272010 272237 53 + . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX DNA_TcMar-Tc1 234640 234912 103 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_hAT-Tip100 32238 32447 78 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX LINE_CR1 547138 547353 20 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 544962 545255 106 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX DNA_hAT-Ac 358283 358753 80 - . . scaffold210 GLEAN mRNA 357624 369316 1 + . ID=CGI_10015899; scaffold1729 WUBlastX LTR_Ngaro 197260 197319 35 + . . scaffold1729 GLEAN mRNA 196724 202355 0.822484 + . ID=CGI_10008492; scaffold102 WUBlastX LTR_Ngaro 643632 643880 21 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Ngaro 643949 644107 48 + . . scaffold102 GLEAN mRNA 643973 666734 0.499984 + . ID=CGI_10028445; scaffold1318 WUBlastX LTR_Gypsy 104323 104568 91 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 380463 381101 109 - . . scaffold101 GLEAN mRNA 372430 382001 0.551916 - . ID=CGI_10021649; scaffold606 WUBlastX LTR_Gypsy 294596 294976 27 + . . scaffold606 GLEAN mRNA 293884 294633 0.55655 + . ID=CGI_10012953; scaffold168 WUBlastX DNA_MuDR 179317 179649 71 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold425 WUBlastX LINE_LOA 92729 92767 21 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_RTE-X 29272 29622 65 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_RTE-X 129905 130075 73 - . . . . . -1 -1 -1 . . . scaffold493 WUBlastX LINE_RTE-X 36208 36336 79 + . . scaffold493 GLEAN mRNA 33582 40988 0.999595 + . ID=CGI_10007246; scaffold789 WUBlastX LINE_RTE-X 386771 386929 87 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX DNA_TcMar-Tc2 230631 231107 107 + . . scaffold186 GLEAN mRNA 224356 240570 0.99998 + . ID=CGI_10012615; scaffold186 WUBlastX DNA_TcMar-Tc2 230631 231107 107 + . . scaffold186 GLEAN mRNA 224585 255140 0.999343 - . ID=CGI_10012616; scaffold43388 WUBlastX LINE_L1-Tx1 229844 229906 20 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold32160 WUBlastX LTR_Pao 210 497 72 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 1180546 1181463 108 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 1180603 1181298 110 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LTR_DIRS 249974 250159 36 + . . . . . -1 -1 -1 . . . scaffold724 WUBlastX DNA_IS4EU 111784 111945 52 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX DNA_IS4EU 513339 513500 52 - . . scaffold363 GLEAN mRNA 509476 539448 0.543882 + . ID=CGI_10019312; scaffold177 WUBlastX LINE_L1 317031 317732 80 + . . scaffold177 GLEAN mRNA 302189 324161 0.999349 - . ID=CGI_10016066; scaffold665 WUBlastX LINE_L1 163844 164737 31 + . . . . . -1 -1 -1 . . . scaffold527 WUBlastX LINE_L1-Tx1 309784 309846 39 - . . . . . -1 -1 -1 . . . scaffold43526 WUBlastX LINE_RTE-X 37356 37619 82 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold469 WUBlastX LINE_RTE-X 641241 641747 70 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LTR_Ngaro 467584 467763 67 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold1358 WUBlastX LINE_CR1 255652 255876 43 - . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX LINE_CR1 41005 41241 76 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold34302 WUBlastX DNA_IS4EU 14364 14582 122 - . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LTR_Gypsy 82680 82748 26 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1 129743 129889 23 - . . . . . -1 -1 -1 . . . scaffold42264 WUBlastX LTR_Ngaro 130277 130669 82 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX DNA_TcMar-Tc1 350395 350673 73 - . . scaffold950 GLEAN mRNA 320484 362683 0.981503 - . ID=CGI_10022928; scaffold1267 WUBlastX LTR_Gypsy 371826 371993 23 - . . . . . -1 -1 -1 . . . scaffold1372 WUBlastX DNA_TcMar-Tc1 13516 13599 20 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_TcMar-Tigge 51546 51608 43 + . . scaffold1888 GLEAN mRNA 49981 53887 0.998764 + . ID=CGI_10013292; scaffold1179 WUBlastX LINE_L1 939636 939812 122 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold852 WUBlastX LINE_L1 185465 185596 24 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Sola 337863 338195 72 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 112410 112472 20 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 112851 113084 70 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 113282 113443 28 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_L1 46658 47560 83 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1-Tx1 795730 795843 39 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LINE_L2 366800 367351 115 - . . . . . -1 -1 -1 . . . scaffold1723 WUBlastX LINE_L2 70510 70740 143 - . . . . . -1 -1 -1 . . . scaffold41900 WUBlastX LTR_Gypsy 66124 67020 120 + . . . . . -1 -1 -1 . . . scaffold1834 WUBlastX DNA_IS4EU 474159 474821 58 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX DNA_Kolobok-Hyd 688254 688721 76 - . . scaffold156 GLEAN mRNA 669682 693584 0.721042 - . ID=CGI_10026516; scaffold1237 WUBlastX LINE_Penelope 57329 58039 78 - . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Penelope 150810 151298 82 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_Penelope 177836 178261 118 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX LINE_RTE-BovB 335617 335829 69 + . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-X 119443 119847 136 + . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX DNA_hAT-Tip100 99517 100101 67 + . . . . . -1 -1 -1 . . . scaffold72 WUBlastX DNA_TcMar-Marin 209622 210272 112 + . . scaffold72 GLEAN mRNA 207105 213716 0.998726 - . ID=CGI_10017841; scaffold482 WUBlastX LINE_RTE-X 112657 112737 29 - . . scaffold482 GLEAN mRNA 106791 115709 0.887892 + . ID=CGI_10010996; scaffold1213 WUBlastX DNA_TcMar-Marin 439207 439725 107 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LTR_Ngaro 39773 40267 41 + . . . . . -1 -1 -1 . . . scaffold559 WUBlastX DNA_Kolobok 41087 41242 84 - . . . . . -1 -1 -1 . . . scaffold559 WUBlastX DNA_Kolobok 41360 41545 36 - . . . . . -1 -1 -1 . . . scaffold34438 WUBlastX RC_Helitron 12866 13258 240 - . . . . . -1 -1 -1 . . . scaffold1560 WUBlastX LINE_L1-Tx1 238522 238917 230 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LTR_Gypsy 193113 193325 58 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1 597843 598214 20 + . . scaffold854 GLEAN mRNA 593945 607422 0.999735 + . ID=CGI_10022261; scaffold42922 WUBlastX LINE_RTE-BovB 146805 146981 50 + . . . . . -1 -1 -1 . . . scaffold40442 WUBlastX DNA_PiggyBac 89687 89899 61 + . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX DNA_TcMar-Tc1 124077 124418 128 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_CR1 592899 593039 94 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LTR_Gypsy 372697 372945 171 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_L1-Tx1 559388 560116 93 + . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 262658 262759 34 - . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LTR_Gypsy 71690 72970 746 - . . . . . -1 -1 -1 . . . scaffold1039 WUBlastX LINE_CR1 10218 10538 295 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LTR_Gypsy 1025530 1026786 1012 - . . scaffold1836 GLEAN mRNA 1025204 1064430 0.980298 - . ID=CGI_10026321; scaffold1734 WUBlastX LINE_CR1 153676 154467 83 - . . scaffold1734 GLEAN mRNA 152020 160994 0.46186 + . ID=CGI_10010541; scaffold41954 WUBlastX DNA_hAT-Tip100 63231 63437 70 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX DNA_Harbinger 241275 241550 75 + . . . . . -1 -1 -1 . . . scaffold43302 WUBlastX DNA_IS4EU 15967 16257 92 + . . scaffold43302 GLEAN mRNA 6372 24073 0.277786 - . ID=CGI_10009755; scaffold82 WUBlastX DNA_IS4EU 494623 495480 57 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX DNA_IS4EU 496072 496233 50 - . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1 44513 44623 43 - . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_Gypsy 11141 11374 85 - . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_Gypsy 11404 12003 380 - . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_Gypsy 12814 12987 92 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_I 245017 245121 25 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_hAT-Blackja 1076124 1076351 86 - . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold113 WUBlastX DNA_MuDR 589683 590009 136 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold1097 WUBlastX LINE_RTE-X 797746 797889 44 + . . scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold599 WUBlastX LINE_L1-Tx1 116378 117076 36 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LINE_CR1 355274 356803 1127 - . . . . . -1 -1 -1 . . . scaffold36196 WUBlastX LTR_Gypsy 30090 32018 1328 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1-Tx1 287134 289758 930 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L2 656507 656950 50 - . . scaffold1188 GLEAN mRNA 648038 660238 0.573951 - . ID=CGI_10025493; scaffold531 WUBlastX LINE_RTE-X 160135 160794 146 - . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_RTE-X 268229 268855 115 + . . scaffold43894 GLEAN mRNA 264402 278141 0.811559 - . ID=CGI_10013892; scaffold601 WUBlastX LINE_RTE-X 946963 947301 23 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_RTE-X 280884 281399 143 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L2 285585 285983 100 + . . scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold422 WUBlastX LTR_Pao 548380 548709 150 - . . . . . -1 -1 -1 . . . scaffold724 WUBlastX DNA_IS4EU 111811 111972 41 + . . . . . -1 -1 -1 . . . scaffold724 WUBlastX DNA_IS4EU 112566 113537 64 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LTR_Gypsy 219860 220198 153 + . . . . . -1 -1 -1 . . . scaffold63 WUBlastX LINE_L1 130973 132055 644 + . . . . . -1 -1 -1 . . . scaffold707 WUBlastX LTR_Gypsy 5027 5407 228 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_L2 429453 430019 158 + . . scaffold1715 GLEAN mRNA 429651 430214 0.999994 + . ID=CGI_10019676; scaffold834 WUBlastX LTR_Gypsy-Cigr 26293 29154 1358 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LTR_Gypsy 321008 323488 1723 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 210151 211638 928 - . . . . . -1 -1 -1 . . . scaffold1631 WUBlastX LTR_Pao 167350 168267 610 - . . scaffold1631 GLEAN mRNA 163195 172842 0.969546 - . ID=CGI_10007204; scaffold718 WUBlastX LINE_CR1-L2 16050 16349 36 + . . . . . -1 -1 -1 . . . scaffold718 WUBlastX LINE_CR1-L2 16336 16722 139 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 68074 68406 177 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 251800 251907 78 + . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LINE_L1-Tx1 366375 366644 36 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_L1-Tx1 772507 773064 144 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 596484 596867 152 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold867 WUBlastX LINE_RTE-X 106072 106218 30 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Sola 313573 314778 108 + . . scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold885 WUBlastX LTR_Gypsy 925541 927232 801 + . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_L1-Tx1 179837 180724 167 + . . scaffold492 GLEAN mRNA 179108 189466 1 - . ID=CGI_10024811; scaffold1759 WUBlastX DNA_TcMar-Fot1 29473 29757 50 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_CR1-L2 453532 453888 153 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold1500 WUBlastX DNA_TcMar-Tc1 84110 84400 116 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 266229 266675 277 + . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L1-Tx1 5185 5520 130 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L1-Tx1 5500 5676 101 - . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_CR1 27902 27976 27 - . . scaffold38626 GLEAN mRNA 19577 33145 1 - . ID=CGI_10002868; scaffold867 WUBlastX LTR_Ngaro 179918 180082 57 - . . . . . -1 -1 -1 . . . scaffold37408 WUBlastX LINE_L2 43156 43368 53 - . . . . . -1 -1 -1 . . . scaffold37408 WUBlastX LINE_L2 43332 43814 136 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 741403 741882 114 - . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX LINE_L1-Tx1 44609 45223 112 + . . . . . -1 -1 -1 . . . scaffold36526 WUBlastX LINE_L1-Tx1 21624 22049 172 - . . scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold1154 WUBlastX LINE_L1-Tx1 567964 568791 202 - . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LTR_Pao 155613 157337 115 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Harbinger 103048 103635 171 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_IS4EU 466915 467667 85 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX DNA_Kolobok-IS4 58066 58587 96 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LTR_Gypsy 173189 174151 342 + . . scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold594 WUBlastX LTR_Gypsy-Cigr 2555 3256 379 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 393767 394531 83 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold885 WUBlastX LINE_L1 1011058 1011726 258 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold1009 WUBlastX LINE_RTE-BovB 1295684 1295806 67 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-BovB 1295812 1296285 253 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX LTR_Gypsy 120645 121157 175 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 121105 121443 140 - . . scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; C31202 WUBlastX LTR_Ngaro 1063 1167 86 + . . . . . -1 -1 -1 . . . C31202 WUBlastX LTR_Ngaro 1166 1663 273 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_L1 21920 22051 62 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Kolobok-IS4 65321 66073 312 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold40104 WUBlastX DNA_IS4EU 37515 37913 227 - . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; C29584 WUBlastX LINE_Penelope 4850 5086 60 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Gypsy 66670 66984 92 - . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX LINE_L2 205428 206135 340 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_DIRS 51530 52333 182 - . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_DIRS 52775 53056 101 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Marin 261082 261369 184 + . . . . . -1 -1 -1 . . . scaffold38524 WUBlastX RC_Helitron 48796 50154 276 - . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LINE_L1-Tx1 143431 143964 74 - . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LINE_L1-Tx1 143928 144827 129 - . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LINE_RTE-X 264867 267260 229 - . . . . . -1 -1 -1 . . . scaffold1203 WUBlastX LINE_L2 161651 161944 204 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX DNA_Crypton 9850 10347 77 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX DNA_Crypton 10757 11413 230 - . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX DNA_TcMar-Tc2 13972 14292 79 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Gypsy 628270 628905 284 + . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_Kolobok-IS4 63602 64339 371 + . . . . . -1 -1 -1 . . . scaffold42070 WUBlastX DNA_Kolobok-IS4 104406 105143 371 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_Penelope 117807 117968 34 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LINE_RTE-X 2313 2519 75 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_RTE-X 229246 229971 75 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_RTE-X 235363 236100 346 + . . . . . -1 -1 -1 . . . C30870 WUBlastX DNA_TcMar-Tc2 7879 8391 399 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Pao 236350 236523 50 - . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 223297 223419 45 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 223580 223750 70 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 224021 224443 120 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX DNA_IS4EU 224662 225102 174 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_L2 391315 391680 84 - . . scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold867 WUBlastX LTR_Gypsy 237806 237991 30 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 515953 516540 146 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_RTE-X 794394 794648 103 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy-Cigr 797782 798369 317 + . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX DNA_hAT-Tip100 212370 212810 22 + . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_L1-Tx1 44488 44622 29 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_L1-Tx1 44644 44703 41 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_L1-Tx1 45592 46161 202 - . . . . . -1 -1 -1 . . . scaffold1536 WUBlastX LTR_Gypsy 28881 29876 238 + . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LINE_L2 96194 97054 449 + . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; C16654 WUBlastX LTR_Gypsy 3 401 526 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LTR_Gypsy 227436 227813 188 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_CR1-L2 455585 455971 285 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_RTE-BovB 501953 502225 150 + . . . . . -1 -1 -1 . . . scaffold36334 WUBlastX LINE_RTE-X 9345 9599 78 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_L1 509282 510442 436 + . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold37002 WUBlastX LINE_CR1 9322 10041 504 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 182540 183133 277 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LTR_Gypsy 183123 183275 41 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1 134676 137228 267 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_Gypsy 678871 678903 22 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX LTR_Ngaro 169028 169405 219 + . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LTR_Gypsy 135510 136238 55 - . . . . . -1 -1 -1 . . . scaffold41982 WUBlastX LINE_CR1-L2 614 1087 45 - . . . . . -1 -1 -1 . . . scaffold40988 WUBlastX LTR_Pao 92237 93223 770 - . . . . . -1 -1 -1 . . . scaffold43116 WUBlastX LTR_Gypsy 140271 141452 723 - . . scaffold43116 GLEAN mRNA 129418 143793 1 - . ID=CGI_10008815; scaffold35910 WUBlastX LINE_L1-Tx1 26461 27102 330 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LINE_L1-Tx1 184000 184413 310 + . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LINE_L1-Tx1 184430 185641 396 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_DIRS 86580 87392 560 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Pao 9301 9405 21 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1 476314 476469 83 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_L2 325745 326176 31 + . . . . . -1 -1 -1 . . . C34402 WUBlastX LTR_Copia 16684 17082 25 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LTR_Copia 263504 263776 47 + . . . . . -1 -1 -1 . . . scaffold1366 WUBlastX LTR_Copia 32025 32297 47 + . . . . . -1 -1 -1 . . . C31414 WUBlastX LTR_Copia 6720 6992 56 + . . C31414 GLEAN mRNA 5466 7672 0.561405 + . ID=CGI_10000746; scaffold499 WUBlastX LINE_L2 12843 13022 24 - . . . . . -1 -1 -1 . . . scaffold32586 WUBlastX LINE_L2 9032 9139 21 + . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LINE_CR1-L2 147890 148054 65 + . . scaffold1000 GLEAN mRNA 146750 156759 0.989263 + . ID=CGI_10013075; scaffold663 WUBlastX LINE_CR1-L2 32890 33045 32 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_L2 139415 139546 69 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_L2 109951 110214 48 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_CR1 167453 167548 70 + . . . . . -1 -1 -1 . . . C27726 WUBlastX LTR_Ngaro 3225 3302 34 + . . . . . -1 -1 -1 . . . scaffold40786 WUBlastX LTR_DIRS 11716 11934 25 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_L2 90659 90724 23 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy-Cigr 471985 472326 39 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1158179 1158424 56 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 378907 379185 32 + . . scaffold43 GLEAN mRNA 367668 379056 0.378374 - . ID=CGI_10021354; scaffold32282 WUBlastX LTR_Gypsy 6695 6781 22 + . . . . . -1 -1 -1 . . . scaffold32282 WUBlastX LTR_Gypsy 7538 7696 69 + . . . . . -1 -1 -1 . . . scaffold43396 WUBlastX DNA_Harbinger 189214 189837 25 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold351 WUBlastX DNA_Harbinger 297285 297425 54 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_Harbinger 548196 548333 47 - . . scaffold1149 GLEAN mRNA 542856 548315 0.999675 - . ID=CGI_10023473; scaffold504 WUBlastX LTR_Gypsy 6120 6248 20 + . . scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold1708 WUBlastX LTR_Gypsy 68215 68952 30 + . . . . . -1 -1 -1 . . . scaffold40526 WUBlastX LTR_Gypsy 57064 57141 21 - . . . . . -1 -1 -1 . . . scaffold37124 WUBlastX LTR_Gypsy 26007 26390 71 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX RC_Helitron 184535 184711 84 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX RC_Helitron 184691 184804 31 - . . . . . -1 -1 -1 . . . scaffold42804 WUBlastX LINE_R2-Hero 114487 114702 48 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_IS4EU 252923 253189 44 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_I 53217 54119 22 + . . scaffold1424 GLEAN mRNA 53871 54215 0.99939 + . ID=CGI_10005350; scaffold35 WUBlastX DNA_hAT-Ac 14569 14790 56 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 324927 325025 30 - . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX DNA_IS4EU 22122 22322 40 + . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold36170 WUBlastX DNA_IS4EU 21465 21620 26 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_Kolobok 1069280 1069459 48 - . . . . . -1 -1 -1 . . . scaffold968 WUBlastX LINE_L1-Tx1 143778 144107 37 + . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_L1 72376 72627 56 + . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L1 389676 389816 41 - . . . . . -1 -1 -1 . . . scaffold1758 WUBlastX LINE_L1-Tx1 58868 59143 49 + . . . . . -1 -1 -1 . . . C29498 WUBlastX LINE_L1 1762 1986 52 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1-Tx1 834425 834814 38 - . . . . . -1 -1 -1 . . . scaffold1813 WUBlastX LINE_L1-Tx1 77872 78195 42 + . . . . . -1 -1 -1 . . . scaffold38422 WUBlastX LINE_CR1 30419 30601 40 - . . scaffold38422 GLEAN mRNA 27073 31824 0.999996 - . ID=CGI_10002764; scaffold40680 WUBlastX LINE_L2 71083 71286 39 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_MuDR 400744 400845 33 - . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold1316 WUBlastX LTR_ERV1 174294 174788 31 - . . scaffold1316 GLEAN mRNA 173430 175142 0.999999 - . ID=CGI_10016298; scaffold1541 WUBlastX LTR_ERV1 222611 223153 53 + . . scaffold1541 GLEAN mRNA 222020 224610 0.981532 + . ID=CGI_10017890; scaffold1541 WUBlastX LTR_ERV1 222611 223153 53 + . . scaffold1541 GLEAN mRNA 201379 234972 0.933811 - . ID=CGI_10017888; scaffold1556 WUBlastX LTR_ERV1 240646 240852 25 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 81474 81683 89 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_Penelope 842437 842658 70 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold22 WUBlastX LINE_Penelope 798758 799087 44 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_Penelope 1603076 1603201 70 - . . . . . -1 -1 -1 . . . scaffold215 WUBlastX LINE_RTE-X 146651 146794 30 - . . scaffold215 GLEAN mRNA 128263 149795 0.702348 + . ID=CGI_10006646; scaffold1749 WUBlastX LINE_RTE-BovB 74025 74447 63 - . . . . . -1 -1 -1 . . . scaffold110 WUBlastX LINE_RTE-BovB 91470 91769 34 + . . . . . -1 -1 -1 . . . scaffold775 WUBlastX LINE_RTE-X 54521 54658 53 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-X 113425 113538 26 - . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 280850 281128 59 - . . . . . -1 -1 -1 . . . scaffold41436 WUBlastX DNA_TcMar-Marin 80929 81201 37 + . . . . . -1 -1 -1 . . . scaffold39074 WUBlastX DNA_TcMar-Marin 12674 12814 53 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 519599 519736 67 + . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX LINE_RTE-X 226430 226573 37 + . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 369499 369711 46 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 360102 360191 51 + . . . . . -1 -1 -1 . . . scaffold42166 WUBlastX LINE_RTE-X 58546 58782 48 + . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX DNA_Sola 467641 467874 51 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX DNA_Sola 13564 14160 55 + . . . . . -1 -1 -1 . . . scaffold444 WUBlastX DNA_TcMar-Marin 411751 411918 61 - . . . . . -1 -1 -1 . . . scaffold41766 WUBlastX DNA_TcMar-Tc1 86060 86293 55 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX DNA_TcMar-Marin 7848 7940 23 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX DNA_TcMar-Marin 550938 551339 40 - . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX LINE_RTE-BovB 32604 32951 57 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_L1-Tx1 57732 57875 65 + . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_L1-Tx1 57881 58051 24 + . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_L1-Tx1 79816 79959 68 + . . . . . -1 -1 -1 . . . scaffold42788 WUBlastX DNA_TcMar-Tc1 67803 68186 32 + . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold36898 WUBlastX LINE_L2 37539 37805 56 + . . . . . -1 -1 -1 . . . C31304 WUBlastX LTR_Copia 7481 8008 41 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 340896 341039 29 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold43280 WUBlastX LTR_DIRS 1620 1937 33 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_I 359858 359956 28 - . . scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold39268 WUBlastX DNA_MuDR 63857 64090 34 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold867 WUBlastX LINE_L1-Tx1 254168 254353 55 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold394 WUBlastX LINE_RTE-X 466840 466971 41 - . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_RTE-X 41983 42321 36 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX DNA_Maverick 64797 65105 73 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Sola 256412 256660 52 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Copia 406652 407095 78 - . . . . . -1 -1 -1 . . . scaffold1405 WUBlastX LINE_L1-Tx1 26767 26934 38 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_ERV1 53768 54031 24 - . . scaffold39900 GLEAN mRNA 53549 54274 0.456972 - . ID=CGI_10003680; scaffold1826 WUBlastX LTR_Gypsy 41160 41411 60 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold43242 WUBlastX DNA_hAT-Tip100 142098 142430 52 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_L2 683060 683347 76 - . . . . . -1 -1 -1 . . . C29558 WUBlastX LINE_L2 3496 3831 61 - . . . . . -1 -1 -1 . . . scaffold806 WUBlastX LTR_DIRS 15035 15451 63 + . . scaffold806 GLEAN mRNA 6658 18169 0.934338 + . ID=CGI_10004919; scaffold1703 WUBlastX LTR_Gypsy 170595 170810 49 - . . . . . -1 -1 -1 . . . scaffold1337 WUBlastX LINE_L1 281970 282722 25 - . . scaffold1337 GLEAN mRNA 281481 282728 0.999981 - . ID=CGI_10012842; scaffold1857 WUBlastX LINE_L1 405424 405726 66 + . . . . . -1 -1 -1 . . . scaffold1119 WUBlastX LINE_RTE-BovB 222704 223048 41 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 354840 354971 20 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 512750 513130 78 + . . . . . -1 -1 -1 . . . scaffold33842 WUBlastX LINE_L1 8695 9159 20 - . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_CR1 185466 185804 90 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold714 WUBlastX LINE_RTE-BovB 452313 452447 20 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Copia 593760 593903 23 + . . scaffold1589 GLEAN mRNA 592118 603104 0.965132 - . ID=CGI_10024122; scaffold128 WUBlastX DNA_IS4EU 56494 56793 44 + . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold575 WUBlastX LINE_R2-Hero 84318 84434 53 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX DNA_Harbinger 575669 576271 73 + . . . . . -1 -1 -1 . . . scaffold580 WUBlastX DNA_Harbinger 549245 549868 58 + . . scaffold580 GLEAN mRNA 548794 565173 0.999676 + . ID=CGI_10020516; scaffold42390 WUBlastX LINE_L1-Tx1 114921 115193 55 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_CR1 256077 256190 21 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_DIRS 345130 345570 78 + . . . . . -1 -1 -1 . . . scaffold31308 WUBlastX LTR_Ngaro 8670 8960 90 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX DNA_TcMar-Tc1 139178 139429 60 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX DNA_TcMar-Marin 38262 39089 74 - . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LTR_Gypsy-Cigr 549202 549534 82 - . . . . . -1 -1 -1 . . . scaffold39050 WUBlastX LTR_Gypsy-Cigr 38927 39259 82 - . . . . . -1 -1 -1 . . . scaffold40638 WUBlastX DNA_TcMar-Tc1 79384 79758 94 - . . . . . -1 -1 -1 . . . C10177 WUBlastX LINE_L2 2 157 97 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LTR_Gypsy 640926 641234 60 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy 154375 154887 98 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX LTR_Ngaro 60914 61327 53 - . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LTR_Ngaro 213286 213651 64 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX RC_Helitron 184308 184361 33 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 811741 812727 26 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 465153 465410 71 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_RTE-BovB 394104 394262 119 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_RTE-X 174297 174419 43 - . . . . . -1 -1 -1 . . . scaffold40928 WUBlastX LINE_RTE-X 68906 69223 55 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold852 WUBlastX LINE_L2 116293 116766 96 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_CR1-L2 1090262 1090789 70 - . . . . . -1 -1 -1 . . . scaffold39624 WUBlastX LTR_Gypsy 13631 14176 61 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LINE_L2 374497 374562 20 + . . scaffold601 GLEAN mRNA 357849 378829 0.543194 + . ID=CGI_10026822; scaffold196 WUBlastX LINE_Penelope 668 1318 32 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_L1-Tx1 207385 207777 56 + . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX RC_Helitron 720 1019 106 + . . . . . -1 -1 -1 . . . scaffold88 WUBlastX DNA_TcMar-Marin 19238 19399 35 - . . scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold775 WUBlastX DNA_Kolobok-Hyd 115529 115843 64 - . . scaffold775 GLEAN mRNA 115517 116176 0.999137 - . ID=CGI_10006091; scaffold271 WUBlastX DNA_TcMar-Tc1 24416 24655 44 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L1-Tx1 6443 6955 40 + . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_CR1-L2 466303 466593 91 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX DNA_PiggyBac 378559 378705 70 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Gypsy 107363 107857 121 - . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; C32778 WUBlastX LTR_Gypsy 7214 7396 111 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_RTE-X 320258 320656 102 + . . scaffold237 GLEAN mRNA 315225 321061 0.999786 + . ID=CGI_10021581; scaffold963 WUBlastX LINE_RTE-X 63343 63657 85 - . . scaffold963 GLEAN mRNA 61192 70868 0.999999 - . ID=CGI_10015615; scaffold1703 WUBlastX LINE_RTE-X 142539 143264 91 + . . scaffold1703 GLEAN mRNA 141021 153045 0.525157 - . ID=CGI_10023043; scaffold1870 WUBlastX LINE_RTE-X 108535 108690 20 + . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold517 WUBlastX DNA_Maverick 217436 217741 90 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-BovB 507963 508157 82 - . . . . . -1 -1 -1 . . . scaffold1468 WUBlastX LINE_RTE-X 147242 147514 94 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_hAT-Tip100 560635 561090 37 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_L2 542220 542528 71 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LINE_RTE-BovB 10332 10898 72 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_Harbinger 308211 308345 72 - . . scaffold461 GLEAN mRNA 305250 311818 1 - . ID=CGI_10020109; scaffold461 WUBlastX DNA_Harbinger 309022 309186 57 - . . scaffold461 GLEAN mRNA 305250 311818 1 - . ID=CGI_10020109; scaffold43648 WUBlastX DNA_Kolobok 236147 236326 84 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 236620 236706 20 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold1154 WUBlastX LINE_L1-Tx1 571248 571748 31 - . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LTR_Gypsy 184990 185901 145 - . . . . . -1 -1 -1 . . . scaffold391 WUBlastX LINE_L1-Tx1 7799 7951 25 + . . . . . -1 -1 -1 . . . scaffold40050 WUBlastX LINE_RTE-X 51975 52760 94 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_RTE-X 174267 174419 39 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_RTE-X 175189 175695 77 - . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_Zator 604540 604725 33 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Ngaro 149678 150259 407 + . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LTR_Ngaro 150256 150996 387 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 52653 53093 147 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 598641 598781 33 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_RTE-X 16304 16588 70 + . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX DNA_Maverick 71377 71787 81 + . . scaffold43634 GLEAN mRNA 56957 73985 0.67193 + . ID=CGI_10011531; scaffold654 WUBlastX DNA_Maverick 51254 51370 46 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc1 709635 709940 149 + . . . . . -1 -1 -1 . . . scaffold38162 WUBlastX LTR_Gypsy 33173 33424 35 + . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LINE_L2 10175 12565 764 - . . . . . -1 -1 -1 . . . scaffold41442 WUBlastX DNA_Crypton 23679 24008 84 - . . . . . -1 -1 -1 . . . scaffold41442 WUBlastX DNA_Crypton 24447 25046 83 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 218095 219432 187 - . . . . . -1 -1 -1 . . . scaffold828 WUBlastX DNA_Harbinger 130072 130476 48 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_IS4EU 69223 69816 175 + . . . . . -1 -1 -1 . . . scaffold175 WUBlastX DNA_IS4EU 476804 477397 175 - . . scaffold175 GLEAN mRNA 471780 490454 0.998407 - . ID=CGI_10021334; scaffold42790 WUBlastX LINE_Penelope 186985 187767 81 - . . scaffold42790 GLEAN mRNA 181485 188091 0.999947 - . ID=CGI_10007719; scaffold1104 WUBlastX LINE_RTE-BovB 424503 424628 21 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 576707 577021 66 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; C29620 WUBlastX LINE_CR1-L2 2489 2896 122 + . . . . . -1 -1 -1 . . . scaffold1445 WUBlastX LTR_Gypsy 249077 249379 31 - . . scaffold1445 GLEAN mRNA 238181 249253 0.990769 - . ID=CGI_10010375; scaffold31090 WUBlastX DNA_TcMar-Fot1 5002 5184 27 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LINE_RTE-X 107554 107811 85 + . . . . . -1 -1 -1 . . . scaffold36022 WUBlastX LINE_RTE-X 16043 16444 146 - . . . . . -1 -1 -1 . . . scaffold1635 WUBlastX DNA_TcMar-Tc1 28830 29687 89 + . . . . . -1 -1 -1 . . . scaffold1687 WUBlastX LINE_RTE-X 77668 80721 946 + . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX DNA_hAT 20435 21175 157 + . . scaffold42994 GLEAN mRNA 20013 30282 0.999999 + . ID=CGI_10008314; scaffold583 WUBlastX LTR_Gypsy 30194 30496 207 + . . scaffold583 GLEAN mRNA 11252 30786 0.538908 + . ID=CGI_10023603; scaffold1037 WUBlastX LTR_Gypsy 126842 127354 181 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 523315 523527 192 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L1-Tx1 388168 388581 38 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 32433 32657 114 - . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX DNA_hAT 164861 165169 114 + . . scaffold44098 GLEAN mRNA 163319 167512 1 + . ID=CGI_10017705; scaffold44098 WUBlastX DNA_hAT 165424 165624 65 + . . scaffold44098 GLEAN mRNA 163319 167512 1 + . ID=CGI_10017705; scaffold1174 WUBlastX DNA_Kolobok-Hyd 930336 931175 185 - . . scaffold1174 GLEAN mRNA 917037 939462 0.964473 + . ID=CGI_10026072; scaffold469 WUBlastX LTR_Pao 152073 153203 813 - . . scaffold469 GLEAN mRNA 146084 157322 0.988922 - . ID=CGI_10024669; scaffold1328 WUBlastX DNA_Maverick 20122 20412 75 + . . . . . -1 -1 -1 . . . scaffold41650 WUBlastX LINE_I 3705 3839 46 - . . scaffold41650 GLEAN mRNA 2732 34982 0.998592 + . ID=CGI_10005337; scaffold43520 WUBlastX DNA_TcMar-Tc2 53215 54261 219 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_Maverick 324985 325410 180 - . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_RTE-BovB 40178 40342 69 + . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LINE_RTE-X 70991 71545 141 - . . . . . -1 -1 -1 . . . scaffold1142 WUBlastX LINE_RTE-X 106732 106968 50 + . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX DNA_TcMar-Tc1 208103 209125 139 - . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LTR_Gypsy 16291 17124 195 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold241 WUBlastX LTR_Gypsy 1009344 1010090 198 + . . . . . -1 -1 -1 . . . scaffold1679 WUBlastX LTR_Gypsy 28125 28622 258 - . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold42490 WUBlastX LINE_CR1 34592 34981 179 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1210397 1210984 220 + . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_RTE-X 110975 111241 53 - . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 29852 30181 166 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LTR_Ngaro 107723 107818 76 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LTR_Ngaro 107839 108231 119 - . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LTR_Ngaro 381351 381872 140 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 49908 50036 21 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_L2 186237 186536 37 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Kolobok 99336 99584 141 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Kolobok 99680 99862 26 + . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX DNA_hAT 130950 131165 89 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold43964 WUBlastX DNA_hAT 130672 130881 143 + . . scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold364 WUBlastX DNA_hAT-Tip100 737215 737487 72 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 1824 2258 197 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 516146 517849 1276 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 518016 519251 822 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_DIRS 328664 329947 131 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold41954 WUBlastX LINE_CR1-L2 50806 51288 116 + . . . . . -1 -1 -1 . . . scaffold1087 WUBlastX LTR_Gypsy 11281 11928 267 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold332 WUBlastX DNA_MuDR 533187 534542 200 + . . . . . -1 -1 -1 . . . scaffold292 WUBlastX LINE_CR1 4627 5154 236 + . . . . . -1 -1 -1 . . . scaffold1548 WUBlastX LINE_CR1 1393 2064 224 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX DNA_hAT 385091 386164 201 - . . scaffold1255 GLEAN mRNA 384695 387892 0.817334 - . ID=CGI_10018085; scaffold1255 WUBlastX DNA_hAT 385091 386164 201 - . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX DNA_hAT 386230 386445 74 - . . scaffold1255 GLEAN mRNA 384695 387892 0.817334 - . ID=CGI_10018085; scaffold1255 WUBlastX DNA_hAT 386230 386445 74 - . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold43986 WUBlastX LINE_RTE-X 385662 386333 217 + . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX DNA_hAT-Tip100 40235 40837 58 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_L1 89427 89645 45 + . . scaffold42674 GLEAN mRNA 75951 89776 0.488756 + . ID=CGI_10007441; scaffold1396 WUBlastX DNA_TcMar-Tc1 14850 14945 24 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_hAT-Tip100 423417 424004 145 + . . scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold39966 WUBlastX LTR_Gypsy 58771 59646 174 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX DNA_P 50050 51366 225 - . . scaffold41834 GLEAN mRNA 48075 59157 0.346565 + . ID=CGI_10005704; scaffold394 WUBlastX LINE_L1-Tx1 362148 362372 47 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LTR_Gypsy-Cigr 161539 162483 864 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LTR_Gypsy-Cigr 162767 163390 215 - . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LINE_CR1 147782 148606 204 - . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LINE_L1-Tx1 12927 13469 58 + . . scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold610 WUBlastX LTR_Gypsy 567206 568390 314 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold925 WUBlastX LTR_DIRS 500798 501430 185 - . . . . . -1 -1 -1 . . . scaffold35866 WUBlastX DNA_IS4EU 9168 9920 82 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_PiggyBac 352527 353072 169 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_R2-Hero 675056 675127 34 - . . . . . -1 -1 -1 . . . scaffold42490 WUBlastX LINE_L1 62985 63158 28 - . . . . . -1 -1 -1 . . . C32512 WUBlastX DNA_TcMar-Fot1 5 550 358 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_RTE-X 198961 200103 293 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_TcMar-Tc1 233436 233492 22 + . . . . . -1 -1 -1 . . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 59528 59677 35 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX DNA_Maverick 48337 48753 124 - . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LINE_L1-Tx1 59567 60874 209 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_L2 107013 107243 172 + . . scaffold1800 GLEAN mRNA 94548 111010 0.999101 - . ID=CGI_10016398; scaffold933 WUBlastX LTR_Gypsy 411031 411918 395 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LINE_RTE-X 343862 344854 302 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 88652 88843 41 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_RTE-X 944798 946033 163 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 52833 53264 71 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 278111 279403 459 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LTR_Gypsy 544003 544272 87 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LTR_Gypsy 544573 544788 100 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LTR_Gypsy 544769 544987 158 + . . . . . -1 -1 -1 . . . scaffold37252 WUBlastX DNA_IS4EU 5238 5645 150 + . . . . . -1 -1 -1 . . . scaffold37252 WUBlastX DNA_IS4EU 6507 7139 261 + . . . . . -1 -1 -1 . . . scaffold37046 WUBlastX LTR_Pao 40210 40296 77 - . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LTR_DIRS 81946 82725 446 - . . scaffold698 GLEAN mRNA 81586 93981 0.592995 - . ID=CGI_10020727; scaffold1403 WUBlastX LTR_Gypsy 597894 598121 124 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 83193 83744 230 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 85003 85200 56 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 85376 85726 48 + . . . . . -1 -1 -1 . . . scaffold35336 WUBlastX LTR_Gypsy-Troyk 19616 20083 526 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_Penelope 138706 139446 183 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LINE_RTE-X 469491 471170 409 + . . scaffold541 GLEAN mRNA 466590 480582 0.782383 + . ID=CGI_10022394; scaffold1838 WUBlastX LINE_Proto2 364606 367227 360 + . . scaffold1838 GLEAN mRNA 361613 368125 0.631432 + . ID=CGI_10014266; scaffold451 WUBlastX LTR_Gypsy 67470 67535 20 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold387 WUBlastX LTR_Gypsy 79826 80668 529 - . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LTR_Gypsy 6260 6703 96 - . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold57 WUBlastX DNA_hAT 293537 293683 26 - . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold616 WUBlastX LINE_RTE-BovB 316629 316673 30 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold616 WUBlastX LINE_RTE-BovB 316661 317218 422 + . . scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold1553 WUBlastX DNA_IS4EU 72657 73328 395 - . . . . . -1 -1 -1 . . . scaffold1553 WUBlastX DNA_IS4EU 73595 73729 45 - . . . . . -1 -1 -1 . . . scaffold43134 WUBlastX DNA_IS4EU 212256 212468 114 - . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 212256 212468 114 - . . scaffold43134 GLEAN mRNA 212178 214956 0.948909 - . ID=CGI_10008899; scaffold43134 WUBlastX DNA_IS4EU 213022 213642 372 - . . scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 213022 213642 372 - . . scaffold43134 GLEAN mRNA 212178 214956 0.948909 - . ID=CGI_10008899; scaffold615 WUBlastX LINE_RTE-X 15891 16247 60 - . . . . . -1 -1 -1 . . . scaffold615 WUBlastX LINE_RTE-X 16301 17068 315 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX DNA_TcMar-Tc1 498303 498779 106 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX DNA_TcMar-Tc1 499222 499311 55 + . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_RTE-X 128571 130214 454 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold1017 WUBlastX LINE_RTE-X 640689 640799 72 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 640931 640993 46 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 641032 641865 413 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_Zator 44926 45831 260 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_Zator 45813 46508 243 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_En-Spm 187865 189112 570 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1500 WUBlastX LTR_Gypsy 185685 186218 509 - . . scaffold1500 GLEAN mRNA 171651 188068 0.692586 - . ID=CGI_10007900; scaffold1350 WUBlastX LTR_DIRS 471327 472238 520 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold37436 WUBlastX DNA_TcMar-Tc1 12349 13350 458 - . . scaffold37436 GLEAN mRNA 9812 25876 0.0600399 + . ID=CGI_10002379; scaffold386 WUBlastX LTR_Pao 194490 195038 292 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LTR_Pao 194927 195763 257 + . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LTR_DIRS 334104 334964 448 - . . . . . -1 -1 -1 . . . scaffold1870 WUBlastX LTR_DIRS 335053 335667 126 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_DIRS 548371 549513 441 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_DIRS 547651 547809 63 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy 566478 566780 37 - . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX DNA_Harbinger 240655 240978 161 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX DNA_Harbinger 240954 241478 353 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 516746 516826 27 - . . . . . -1 -1 -1 . . . C21160 WUBlastX LINE_L2 191 1318 630 - . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX LINE_R2-Hero 428596 429087 211 + . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LINE_RTE-X 647688 648458 167 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LINE_CR1 150390 151730 357 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_L1 21895 22410 219 + . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX LTR_Gypsy 84280 84666 117 - . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold150 WUBlastX LINE_L1-Tx1 541429 542043 286 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 542022 542234 118 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 542243 543091 201 + . . . . . -1 -1 -1 . . . scaffold36598 WUBlastX LTR_Ngaro 30041 30256 149 - . . scaffold36598 GLEAN mRNA 27586 31293 0.99428 - . ID=CGI_10002013; scaffold42568 WUBlastX LINE_RTE-BovB 11446 11586 89 - . . . . . -1 -1 -1 . . . scaffold42568 WUBlastX LINE_RTE-BovB 11962 12021 51 - . . . . . -1 -1 -1 . . . C25652 WUBlastX LTR_Gypsy 2197 3093 437 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Pao 291688 292419 22 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 318545 318823 154 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Pao 320120 320311 73 - . . . . . -1 -1 -1 . . . scaffold163 WUBlastX LTR_Ngaro 110208 111548 824 + . . scaffold163 GLEAN mRNA 103633 112444 0.895517 + . ID=CGI_10018610; scaffold1189 WUBlastX LINE_L1-Tx1 211068 212969 621 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 113175 113693 335 + . . . . . -1 -1 -1 . . . scaffold34144 WUBlastX LTR_Copia 676 984 23 - . . . . . -1 -1 -1 . . . scaffold932 WUBlastX LTR_Gypsy 43209 43928 27 - . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_CR1-L2 53024 53158 54 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_CR1 128792 129091 69 - . . . . . -1 -1 -1 . . . scaffold148 WUBlastX LINE_L2 41121 41516 38 + . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX LINE_CR1 144246 144326 31 + . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_L2 321296 321484 35 + . . scaffold43894 GLEAN mRNA 321019 321303 0.997806 + . ID=CGI_10013894; scaffold43182 WUBlastX LTR_DIRS 94814 94951 68 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LTR_Gypsy 226598 226732 22 - . . scaffold1061 GLEAN mRNA 222330 230527 0.999351 - . ID=CGI_10017248; C12348 WUBlastX LTR_Gypsy 4 156 82 - . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy 174636 174953 64 + . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LTR_Gypsy 223334 223774 72 - . . scaffold43634 GLEAN mRNA 223292 224107 0.823589 - . ID=CGI_10011538; scaffold290 WUBlastX LTR_Gypsy 552705 553031 23 + . . scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold1009 WUBlastX LTR_Gypsy 546390 546500 60 - . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX LTR_Gypsy 46759 47076 72 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 1147683 1147958 71 - . . scaffold601 GLEAN mRNA 1147404 1147721 0.999451 - . ID=CGI_10026859; scaffold1747 WUBlastX LTR_Gypsy 19846 20136 49 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX LTR_Gypsy 432669 433010 59 + . . . . . -1 -1 -1 . . . C6801 WUBlastX LTR_Gypsy 3 86 80 - . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 57156 57533 53 - . . . . . -1 -1 -1 . . . scaffold1290 WUBlastX LTR_Gypsy 56292 57245 38 + . . . . . -1 -1 -1 . . . scaffold35084 WUBlastX LTR_Gypsy 11016 11117 31 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX DNA_Harbinger 20706 20891 50 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Tc2 1359161 1359271 51 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Tc2 1359315 1359428 20 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LINE_Jockey 293608 293718 34 - . . . . . -1 -1 -1 . . . scaffold38898 WUBlastX LTR_Ngaro 5199 5351 84 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_Ngaro 212945 213118 54 + . . . . . -1 -1 -1 . . . scaffold37668 WUBlastX LINE_Penelope 28004 28489 27 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX DNA_P 65722 65835 49 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_P 4805 5017 49 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L1 547998 548087 38 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; C30864 WUBlastX LINE_L1 4396 4638 40 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 532212 532853 41 + . . scaffold150 GLEAN mRNA 532020 532706 0.618008 + . ID=CGI_10028613; scaffold1888 WUBlastX LINE_RTE-X 152705 153001 56 + . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_RTE-X 601942 602121 73 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 241082 241258 72 - . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX LINE_RTE-X 34404 34781 51 + . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LINE_RTE-BovB 317592 318089 61 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_RTE-X 698681 698794 33 - . . scaffold1362 GLEAN mRNA 691736 715477 0.999895 - . ID=CGI_10023954; scaffold925 WUBlastX LINE_RTE-X 379884 379952 21 + . . scaffold925 GLEAN mRNA 368361 388516 0.521242 + . ID=CGI_10017426; scaffold935 WUBlastX LINE_RTE-BovB 80024 80485 44 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-BovB 496118 496348 51 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX DNA_Maverick 330501 330737 49 - . . . . . -1 -1 -1 . . . scaffold39642 WUBlastX LTR_ERVK 54665 54739 22 + . . . . . -1 -1 -1 . . . scaffold787 WUBlastX DNA_PiggyBac 83433 83681 22 + . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX DNA_Maverick 83214 83477 29 - . . . . . -1 -1 -1 . . . scaffold40346 WUBlastX DNA_Maverick 82043 82309 23 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_PiggyBac 756953 757288 36 + . . . . . -1 -1 -1 . . . scaffold722 WUBlastX DNA_PiggyBac 286532 286762 63 - . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX DNA_Maverick 98197 98307 32 - . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX DNA_Maverick 98351 98551 48 - . . . . . -1 -1 -1 . . . scaffold36794 WUBlastX DNA_Maverick 36805 36924 42 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_TcMar-Marin 61134 61193 30 + . . scaffold370 GLEAN mRNA 48035 69825 0.999273 - . ID=CGI_10025517; scaffold352 WUBlastX LINE_RTE-X 241248 241463 32 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_TcMar-Marin 422535 422729 59 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LTR_Gypsy 95179 95535 30 + . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX LTR_Gypsy 388552 388683 26 + . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX DNA_TcMar-Tc1 1578 1637 24 - . . scaffold1707 GLEAN mRNA 1527 2835 0.999999 - . ID=CGI_10009945; scaffold394 WUBlastX LTR_Gypsy 436485 437216 20 + . . scaffold394 GLEAN mRNA 435520 450975 0.532272 + . ID=CGI_10022085; scaffold37938 WUBlastX LINE_L1-Tx1 49276 49413 34 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_CR1-L2 358831 359166 70 - . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX DNA_Chapaev 34168 34569 69 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX DNA_Chapaev 378198 378599 69 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Copia 953712 953777 32 + . . . . . -1 -1 -1 . . . scaffold38552 WUBlastX LTR_Gypsy 25458 25499 21 + . . . . . -1 -1 -1 . . . scaffold1670 WUBlastX LTR_Gypsy 504262 505047 38 - . . . . . -1 -1 -1 . . . scaffold1386 WUBlastX LTR_Gypsy 126669 126887 42 - . . . . . -1 -1 -1 . . . scaffold38492 WUBlastX DNA_hAT-Ac 38135 38281 87 - . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_hAT-Charlie 207043 208080 28 + . . scaffold1743 GLEAN mRNA 206587 209579 0.614112 + . ID=CGI_10011657; scaffold40054 WUBlastX DNA_IS4EU 50280 50483 97 - . . . . . -1 -1 -1 . . . scaffold1811 WUBlastX DNA_IS4EU 68322 68666 53 - . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX DNA_IS4EU 56623 57018 89 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LTR_Gypsy 340298 340390 22 - . . . . . -1 -1 -1 . . . scaffold252 WUBlastX LINE_L1-Tx1 271644 271751 42 - . . scaffold252 GLEAN mRNA 258013 272471 0.973463 + . ID=CGI_10010771; scaffold252 WUBlastX LINE_L1-Tx1 271892 272023 28 - . . scaffold252 GLEAN mRNA 258013 272471 0.973463 + . ID=CGI_10010771; scaffold388 WUBlastX LINE_L2 414152 414424 56 + . . . . . -1 -1 -1 . . . C27694 WUBlastX DNA_Maverick 2709 3227 54 - . . C27694 GLEAN mRNA 2532 3020 1 - . ID=CGI_10000376; scaffold1277 WUBlastX LTR_Ngaro 99984 100076 42 - . . . . . -1 -1 -1 . . . scaffold1148 WUBlastX LTR_Copia 1484 1588 31 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LTR_Pao 186836 187156 21 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_CR1-L2 657104 657253 78 - . . scaffold1188 GLEAN mRNA 648038 660238 0.573951 - . ID=CGI_10025493; scaffold1733 WUBlastX LINE_CR1 163751 164173 24 + . . scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold683 WUBlastX LTR_Ngaro 202843 203136 52 + . . . . . -1 -1 -1 . . . scaffold221 WUBlastX DNA_Kolobok-IS4 61398 61631 56 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX DNA_IS4EU 259059 259376 86 + . . scaffold1885 GLEAN mRNA 259176 276402 0.258057 + . ID=CGI_10013903; scaffold43054 WUBlastX RC_Helitron 57 509 45 + . . . . . -1 -1 -1 . . . scaffold34942 WUBlastX DNA_Kolobok 11862 12092 50 - . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold973 WUBlastX LINE_RTE-BovB 297165 297326 32 + . . . . . -1 -1 -1 . . . scaffold34710 WUBlastX LINE_RTE-X 19212 19586 45 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_RTE-X 94026 94175 67 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LINE_L2 107163 107816 39 + . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_hAT-Tip100 379991 380356 100 - . . . . . -1 -1 -1 . . . C33708 WUBlastX LTR_Ngaro 3799 4086 84 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_hAT-hATw 251921 252211 80 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX DNA_Harbinger 124908 125171 32 - . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_Rex-Babar 245068 245157 23 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 218912 219124 113 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_TcMar-Tc1 144897 145142 77 - . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX DNA_TcMar-Marin 460637 461485 30 + . . scaffold1650 GLEAN mRNA 454767 463877 0.937811 + . ID=CGI_10017782; scaffold354 WUBlastX LTR_DIRS 751448 751681 61 - . . . . . -1 -1 -1 . . . C34458 WUBlastX LTR_DIRS 10679 10867 52 - . . . . . -1 -1 -1 . . . C34458 WUBlastX LTR_DIRS 11072 11395 76 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_L2 856714 857202 67 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX LTR_Gypsy 270154 270354 29 - . . . . . -1 -1 -1 . . . C29982 WUBlastX LTR_Gypsy 6 464 66 - . . . . . -1 -1 -1 . . . scaffold37900 WUBlastX DNA_IS4EU 27933 28421 52 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold98 WUBlastX DNA_IS4EU 221215 221703 52 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_IS4EU 253377 253865 52 - . . scaffold126 GLEAN mRNA 251015 257085 0.999956 + . ID=CGI_10019188; scaffold1514 WUBlastX DNA_IS4EU 56211 56699 52 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_RTE-X 292662 292724 37 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold599 WUBlastX LINE_RTE-X 293716 293817 61 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold157 WUBlastX LINE_L1-Tx1 658565 658627 21 + . . . . . -1 -1 -1 . . . scaffold41722 WUBlastX LINE_CR1 8064 8288 30 + . . . . . -1 -1 -1 . . . scaffold1780 WUBlastX LTR_Gypsy 133098 133136 20 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_DIRS? 1006907 1007029 47 + . . . . . -1 -1 -1 . . . scaffold1826 WUBlastX LTR_Gypsy 40912 41145 82 + . . scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold382 WUBlastX DNA_IS4EU 35299 35817 112 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_IS4EU 288339 289103 101 - . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold440 WUBlastX DNA_IS4EU 337900 338418 112 + . . . . . -1 -1 -1 . . . scaffold40690 WUBlastX DNA_Kolobok-IS4 6692 7201 38 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LTR_Gypsy 974 1108 63 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_Maverick 124915 125724 74 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 842791 843117 91 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LINE_RTE-BovB 62171 62293 35 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_RTE-X 59204 59374 23 + . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LINE_L1-Tx1 209670 209861 36 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_L1-Tx1 316976 317398 51 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold942 WUBlastX LINE_CR1-L2 97697 98116 118 - . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 30625 30810 40 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LTR_Gypsy 341453 341719 51 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_Crypton 1857895 1858287 71 + . . . . . -1 -1 -1 . . . C35282 WUBlastX LTR_Gypsy 1961 2359 107 + . . C35282 GLEAN mRNA 1142 2704 0.999228 + . ID=CGI_10001456; scaffold1730 WUBlastX DNA_IS4EU 146789 147610 73 + . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LINE_R2-Hero 84888 85115 95 + . . . . . -1 -1 -1 . . . C30608 WUBlastX LINE_L1-Tx1 5727 5942 126 + . . . . . -1 -1 -1 . . . scaffold43500 WUBlastX LINE_L1 70744 71640 22 - . . scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; C28064 WUBlastX LTR_Ngaro 4520 5227 88 + . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_Rex-Babar 322964 323062 23 - . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_RTE-X 110732 110890 30 - . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_RTE-X 416777 417049 129 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_CR1 106993 107676 61 - . . . . . -1 -1 -1 . . . scaffold686 WUBlastX DNA_PiggyBac 32662 32751 52 + . . scaffold686 GLEAN mRNA 23498 37370 0.50665 - . ID=CGI_10004462; scaffold971 WUBlastX LTR_Pao 65043 65090 22 + . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LTR_Gypsy 4481 4843 87 + . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LTR_Gypsy 4967 5143 59 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 505595 506350 137 - . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LTR_Gypsy 82223 82996 122 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_IS4EU 251921 252346 112 - . . scaffold126 GLEAN mRNA 251015 257085 0.999956 + . ID=CGI_10019188; scaffold1041 WUBlastX LTR_Ngaro 37259 37567 71 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Ngaro 37639 37725 27 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_L1 245130 245201 33 - . . scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold41568 WUBlastX LINE_RTE-X 77746 77895 36 - . . scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold1699 WUBlastX DNA_PiggyBac 198110 198433 62 + . . . . . -1 -1 -1 . . . scaffold1391 WUBlastX LINE_L1-Tx1 480984 481226 20 + . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LINE_L1-Tx1 45993 46241 75 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_Rex-Babar 153625 154152 115 - . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX LINE_L2 63222 63416 108 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 767559 768089 118 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX DNA_En-Spm 614837 615004 70 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold449 WUBlastX LINE_RTE-X 138998 139666 68 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LINE_RTE-X 62658 62984 97 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold101 WUBlastX LTR_Gypsy 509219 509791 280 - . . . . . -1 -1 -1 . . . scaffold1859 WUBlastX LINE_L2 44748 46163 771 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_P 307901 309988 925 - . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold854 WUBlastX LTR_Gypsy 10945 12006 498 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 1219310 1220215 385 - . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold117 WUBlastX LINE_CR1 53825 53983 113 + . . scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold760 WUBlastX LTR_Gypsy 800291 800710 61 - . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold156 WUBlastX LTR_Gypsy 27586 27705 36 + . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_Kolobok-IS4 144861 145001 39 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX DNA_Maverick 522082 523521 51 - . . scaffold557 GLEAN mRNA 517497 527707 0.973204 - . ID=CGI_10017992; scaffold121 WUBlastX LINE_RTE-X 452228 452380 47 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LTR_Gypsy 150930 152837 867 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold38378 WUBlastX LINE_L1-Tx1 51833 52945 546 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LINE_L1-Tx1 53413 53655 135 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LINE_L1-Tx1 50320 51429 86 - . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LINE_CR1 38097 38609 361 - . . . . . -1 -1 -1 . . . scaffold500 WUBlastX LINE_CR1 38970 39698 554 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_L1-Tx1 536601 538802 859 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_CR1-L2 524802 525056 36 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 122501 122851 178 + . . . . . -1 -1 -1 . . . scaffold13 WUBlastX DNA_En-Spm 159179 159601 118 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Ngaro 138987 139313 154 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_L1 91073 91549 36 - . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L1 29577 29828 94 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_L1 196996 197697 137 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 147184 147255 20 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-X 579640 581766 568 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_RTE-BovB 338446 338757 34 - . . . . . -1 -1 -1 . . . scaffold42210 WUBlastX LINE_L1-Tx1 101356 101904 381 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold42210 WUBlastX LINE_L1-Tx1 101869 103503 433 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold42450 WUBlastX LTR_Pao 163650 163958 213 - . . . . . -1 -1 -1 . . . scaffold38464 WUBlastX LTR_Ngaro 32323 32370 22 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 32366 32746 153 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold1077 WUBlastX DNA_Harbinger 501018 501122 91 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Harbinger 500217 500432 34 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX DNA_hAT-Tip100 159499 159732 181 + . . scaffold1518 GLEAN mRNA 153424 166490 0.996783 + . ID=CGI_10017796; scaffold1541 WUBlastX DNA_hAT-Tip100 477608 477841 174 + . . . . . -1 -1 -1 . . . C30216 WUBlastX DNA_hAT-Tip100 3212 3445 177 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 70498 70647 35 - . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LINE_L2 12565 12993 165 - . . . . . -1 -1 -1 . . . C26236 WUBlastX LINE_L2 814 1488 124 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_L2 148361 149107 144 - . . . . . -1 -1 -1 . . . scaffold40104 WUBlastX LINE_L2 6175 6921 146 + . . . . . -1 -1 -1 . . . scaffold1593 WUBlastX DNA_Crypton 3853 4569 85 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 1841 2125 88 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Maverick 175051 175188 41 + . . . . . -1 -1 -1 . . . scaffold1207 WUBlastX LINE_RTE-BovB 3743 3913 94 - . . . . . -1 -1 -1 . . . scaffold1207 WUBlastX LINE_RTE-BovB 4597 4782 38 - . . . . . -1 -1 -1 . . . scaffold32546 WUBlastX LINE_L1-Tx1 5636 5944 45 - . . . . . -1 -1 -1 . . . scaffold32546 WUBlastX LINE_L1-Tx1 7359 8465 560 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_L1-Tx1 103554 103679 37 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LTR_Gypsy 60496 60627 23 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_hAT-Tip100 102268 102897 206 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_Proto2 83244 83492 102 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_RTE-X 1426590 1427165 120 + . . . . . -1 -1 -1 . . . scaffold1452 WUBlastX DNA_TcMar-Tc1 129030 129608 112 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 212744 212908 66 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Gypsy 9910 12198 1620 - . . . . . -1 -1 -1 . . . scaffold1386 WUBlastX LINE_CR1 115439 116110 156 + . . . . . -1 -1 -1 . . . C28876 WUBlastX LTR_Gypsy 5272 5976 221 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX LINE_RTE-X 220360 221001 72 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 662924 663499 320 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 663486 664172 270 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 664163 664927 363 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 664934 665407 322 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 665389 665598 91 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 666215 666544 198 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_L1 42372 42443 59 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 763101 763559 171 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_L1 706104 706454 157 - . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold206 WUBlastX LINE_L1 271183 271854 108 - . . . . . -1 -1 -1 . . . scaffold41400 WUBlastX LINE_CR1-L2 10002 10568 220 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 229844 230236 42 - . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX DNA_MuDR 219886 220242 47 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_RTE-X 261269 261778 246 - . . scaffold347 GLEAN mRNA 231355 265361 0.350161 - . ID=CGI_10021787; scaffold1141 WUBlastX LTR_DIRS 12604 12783 105 - . . . . . -1 -1 -1 . . . scaffold908 WUBlastX LTR_Ngaro 318104 318601 152 - . . . . . -1 -1 -1 . . . scaffold1488 WUBlastX LINE_RTE-X 99039 99683 167 - . . scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold1665 WUBlastX LTR_Ngaro 232555 232824 182 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy 195949 196191 104 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 187563 188099 134 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_RTE-X 188117 188272 66 + . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX LTR_Pao 333703 333795 43 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold576 WUBlastX LINE_RTE-X 104033 105145 194 - . . . . . -1 -1 -1 . . . scaffold35726 WUBlastX LINE_L1-Tx1 363 1550 89 - . . . . . -1 -1 -1 . . . scaffold38654 WUBlastX LINE_Penelope 35333 35473 31 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_Penelope 571537 572307 253 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_Kolobok 206131 206391 93 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold499 WUBlastX LINE_RTE-X 86811 87827 221 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LTR_Gypsy 703465 704160 300 + . . . . . -1 -1 -1 . . . scaffold1090 WUBlastX DNA_IS4EU 3859 4500 302 - . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_L1 396442 397326 278 - . . . . . -1 -1 -1 . . . scaffold43084 WUBlastX LINE_L1 13309 14193 278 - . . . . . -1 -1 -1 . . . scaffold631 WUBlastX LINE_L1 317606 318490 278 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Fot1 393426 394751 327 - . . scaffold794 GLEAN mRNA 378971 426999 0.796099 - . ID=CGI_10017158; scaffold610 WUBlastX LTR_Gypsy-Cigr 128988 129476 152 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold610 WUBlastX LTR_Gypsy-Cigr 129944 130372 198 - . . scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold1711 WUBlastX LTR_Pao 98403 98639 70 - . . . . . -1 -1 -1 . . . scaffold1087 WUBlastX LTR_Gypsy 14962 15729 376 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold1484 WUBlastX LTR_Ngaro 108110 108886 119 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold39758 WUBlastX LTR_DIRS 19592 19717 94 - . . . . . -1 -1 -1 . . . scaffold38854 WUBlastX LINE_L1-Tx1 18115 18603 237 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold38854 WUBlastX LINE_L1-Tx1 18767 18844 33 + . . scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold1018 WUBlastX LINE_RTE-X 78205 78294 22 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX DNA_Maverick 67556 67615 29 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX DNA_Maverick 67611 68000 259 + . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX DNA_Maverick 68006 68197 115 + . . . . . -1 -1 -1 . . . scaffold1091 WUBlastX LTR_Gypsy 103 1395 321 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX DNA_Kolobok 401319 401399 33 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX DNA_Kolobok 401614 401721 60 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX DNA_Kolobok 401814 401951 74 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX DNA_Kolobok 402525 402713 120 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX DNA_Kolobok 402811 402963 64 - . . . . . -1 -1 -1 . . . scaffold42090 WUBlastX LINE_L2 3851 4675 325 - . . . . . -1 -1 -1 . . . scaffold531 WUBlastX DNA_Academ 22982 23659 299 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold41480 WUBlastX LINE_L2 115375 115722 215 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX DNA_TcMar-Fot1 649168 649326 77 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 649353 649658 218 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 649664 649900 180 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold1878 WUBlastX LTR_Gypsy 124705 125667 487 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX LTR_Gypsy 252704 252859 51 + . . scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold126 WUBlastX LTR_Gypsy 148016 148072 20 + . . . . . -1 -1 -1 . . . C28722 WUBlastX LINE_CR1 4052 4684 100 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Pao 416436 416960 115 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1 548779 548976 62 - . . . . . -1 -1 -1 . . . scaffold858 WUBlastX LINE_RTE-X 8263 8721 116 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LTR_Gypsy-Cigr 66908 67543 219 + . . . . . -1 -1 -1 . . . C29380 WUBlastX LINE_L1-Tx1 5287 6537 430 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 419416 419526 26 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Maverick 402549 403085 300 + . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_RTE-X 137247 137558 121 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_RTE-X 137710 139080 246 - . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_CR1 195545 196384 237 + . . scaffold44098 GLEAN mRNA 188555 213785 0.544557 + . ID=CGI_10017708; scaffold912 WUBlastX LINE_RTE-X 51743 52891 297 + . . . . . -1 -1 -1 . . . scaffold210 WUBlastX LTR_Ngaro 224681 225130 310 + . . scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold471 WUBlastX LINE_L1 388850 389659 187 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LTR_Gypsy 30708 31004 122 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Maverick 529719 530171 46 + . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LTR_Gypsy 189881 191131 661 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Sola 251102 251365 51 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Sola 251374 252405 453 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Sola 253017 253205 132 + . . . . . -1 -1 -1 . . . scaffold37358 WUBlastX LINE_CR1 39963 40412 42 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_CR1-L2 232782 233348 28 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_CR1-L2 142599 142685 53 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LINE_CR1-L2 66656 66694 27 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LINE_CR1 1705518 1705697 20 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_CR1-L2 485489 485530 21 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_L2 25539 25655 50 + . . . . . -1 -1 -1 . . . scaffold385 WUBlastX LINE_CR1 138721 138831 26 + . . scaffold385 GLEAN mRNA 126563 138970 0.944104 - . ID=CGI_10011596; scaffold210 WUBlastX LINE_L2 385200 385487 29 + . . . . . -1 -1 -1 . . . scaffold40216 WUBlastX LINE_L2 33963 34229 32 + . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LINE_CR1 65035 65355 34 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 207619 208236 36 - . . scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold419 WUBlastX LTR_Copia 690405 690671 43 + . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LINE_Jockey 17636 17698 26 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_Jockey 18696 18818 41 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold1714 WUBlastX DNA_hAT-Tip100 217958 218188 55 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_hAT 224267 224578 59 + . . scaffold150 GLEAN mRNA 224010 241607 0.593383 + . ID=CGI_10028591; scaffold635 WUBlastX DNA_hAT 57779 58090 59 - . . scaffold635 GLEAN mRNA 57167 59861 0.834155 - . ID=CGI_10008919; scaffold593 WUBlastX DNA_PiggyBac 96993 97064 22 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX LTR_Pao 225799 226239 61 + . . . . . -1 -1 -1 . . . scaffold1841 WUBlastX LTR_Pao 104019 104447 34 - . . scaffold1841 GLEAN mRNA 102294 122510 0.525288 - . ID=CGI_10008273; scaffold1800 WUBlastX LTR_Pao 59758 59925 30 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold332 WUBlastX LINE_L2 271107 271559 33 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_CR1 397203 397370 45 - . . . . . -1 -1 -1 . . . scaffold36778 WUBlastX LINE_CR1 35273 35596 26 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 107113 107238 27 - . . scaffold728 GLEAN mRNA 80377 108098 0.99809 - . ID=CGI_10018228; scaffold962 WUBlastX LTR_Gypsy 17859 18077 34 + . . . . . -1 -1 -1 . . . scaffold326 WUBlastX DNA_hAT-Tip100 17548 17868 54 - . . . . . -1 -1 -1 . . . scaffold63 WUBlastX DNA_En-Spm 415228 415536 43 + . . scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold43136 WUBlastX LTR_Gypsy 4100 4291 53 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Crypton 529888 530181 84 + . . scaffold880 GLEAN mRNA 522974 529941 0.988013 + . ID=CGI_10022199; scaffold28424 WUBlastX DNA_Crypton 3920 4111 62 - . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LTR_Gypsy 223382 223942 66 - . . scaffold43634 GLEAN mRNA 223292 224107 0.823589 - . ID=CGI_10011538; scaffold880 WUBlastX LTR_Gypsy 533542 533649 29 - . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold36070 WUBlastX DNA_Harbinger 14046 14204 63 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 128358 128681 71 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy 560103 560315 20 - . . scaffold1750 GLEAN mRNA 560254 561945 0.999999 - . ID=CGI_10021498; scaffold847 WUBlastX LTR_Gypsy 493546 493785 41 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy 509733 509861 21 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LTR_Gypsy 338649 339308 34 + . . scaffold1711 GLEAN mRNA 339141 339371 0.69447 + . ID=CGI_10015611; scaffold162 WUBlastX LTR_Gypsy 72882 73172 61 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold425 WUBlastX DNA_IS4EU 221964 222284 38 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX DNA_IS4EU 327127 327897 31 + . . scaffold705 GLEAN mRNA 326554 329531 0.318359 + . ID=CGI_10015516; scaffold37668 WUBlastX DNA_IS4EU 22217 22687 34 - . . . . . -1 -1 -1 . . . scaffold1200 WUBlastX DNA_IS4EU 164405 164557 52 - . . scaffold1200 GLEAN mRNA 162971 167931 0.983119 - . ID=CGI_10007622; scaffold712 WUBlastX DNA_IS4EU 202208 202414 52 - . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX DNA_IS4EU 950 1282 47 + . . . . . -1 -1 -1 . . . scaffold635 WUBlastX DNA_IS4EU 55934 56266 49 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_IS4EU 109652 109984 49 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 124597 125247 39 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX DNA_IS4EU 860625 860906 41 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_IS4EU 252491 252592 33 - . . scaffold126 GLEAN mRNA 251015 257085 0.999956 + . ID=CGI_10019188; scaffold617 WUBlastX DNA_hAT-Ac 127228 127299 33 - . . scaffold617 GLEAN mRNA 125086 132906 0.990104 - . ID=CGI_10012725; scaffold41834 WUBlastX DNA_TcMar-Tc2 126523 126846 65 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX DNA_TcMar-Tc2 58288 58587 71 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_Kolobok 22835 23191 42 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX DNA_Kolobok-Hyd 267358 267603 21 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_Kolobok-Hyd 765640 765993 64 + . . scaffold150 GLEAN mRNA 757883 772537 0.984163 + . ID=CGI_10028624; scaffold150 WUBlastX DNA_Kolobok-Hyd 765640 765993 64 + . . scaffold150 GLEAN mRNA 757918 772055 0.999429 - . ID=CGI_10028625; scaffold698 WUBlastX LINE_L1 145327 145515 60 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX DNA_TcMar-Tc1 172861 173193 49 - . . scaffold1352 GLEAN mRNA 168784 185855 0.640433 - . ID=CGI_10018412; C22430 WUBlastX DNA_TcMar-Tc2 230 493 60 + . . C22430 GLEAN mRNA 263 553 0.555898 + . ID=CGI_10000081; scaffold38626 WUBlastX DNA_TcMar-Marin 10326 10544 34 - . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX DNA_TcMar-Marin 202322 202402 30 + . . scaffold43818 GLEAN mRNA 188862 206391 0.999997 + . ID=CGI_10012766; scaffold1138 WUBlastX LINE_L2 206884 207117 54 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_Jockey 155787 155897 29 - . . scaffold712 GLEAN mRNA 144650 156180 1 + . ID=CGI_10016478; scaffold756 WUBlastX DNA_Maverick 241208 241513 70 + . . scaffold756 GLEAN mRNA 233283 244530 0.261655 + . ID=CGI_10016461; scaffold1767 WUBlastX DNA_Maverick 373975 374355 30 - . . scaffold1767 GLEAN mRNA 373639 384950 0.998695 - . ID=CGI_10016926; scaffold1179 WUBlastX LINE_L1 940955 941209 25 + . . scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold86 WUBlastX LINE_RTE-BovB 1483363 1483782 36 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 297192 297326 45 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX LINE_RTE-X 355857 355988 54 + . . scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold1439 WUBlastX LINE_RTE-X 34608 34973 59 + . . . . . -1 -1 -1 . . . scaffold32618 WUBlastX LINE_RTE-X 1444 1641 28 + . . . . . -1 -1 -1 . . . scaffold43206 WUBlastX DNA_Sola 222254 222898 35 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_Sola 208582 208713 61 + . . scaffold1599 GLEAN mRNA 204689 219809 0.999676 - . ID=CGI_10027141; scaffold385 WUBlastX LINE_RTE-X 218032 218256 74 + . . . . . -1 -1 -1 . . . scaffold1895 WUBlastX LINE_RTE-X 188909 189064 47 + . . scaffold1895 GLEAN mRNA 187950 192915 1 + . ID=CGI_10010985; scaffold1895 WUBlastX LINE_RTE-X 188909 189064 47 + . . scaffold1895 GLEAN mRNA 187702 201524 0.585578 - . ID=CGI_10010984; scaffold156 WUBlastX LINE_RTE-X 328012 328224 33 - . . scaffold156 GLEAN mRNA 326940 337481 0.63561 + . ID=CGI_10026496; scaffold337 WUBlastX LTR_DIRS 976668 976811 34 - . . . . . -1 -1 -1 . . . scaffold1551 WUBlastX LINE_L1-Tx1 160865 161122 34 + . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LINE_L1-Tx1 170620 170907 28 + . . . . . -1 -1 -1 . . . scaffold35926 WUBlastX LINE_L1-Tx1 24531 24620 21 - . . . . . -1 -1 -1 . . . scaffold37668 WUBlastX LTR_ERV1 36700 36771 22 + . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_TcMar-Marin 228943 228999 21 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX DNA_TcMar-Marin 819698 819754 21 - . . . . . -1 -1 -1 . . . scaffold1028 WUBlastX LINE_L1-Tx1 226162 226308 26 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_CR1-L2 481747 481965 37 - . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy-Cigr 229824 230123 51 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_Crypton 326823 327005 34 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_Crypton 327321 327431 32 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 126107 126223 20 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Gypsy 171059 171214 25 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Kolobok-Hyd 9236 9577 43 + . . scaffold317 GLEAN mRNA 7090 24632 0.990181 + . ID=CGI_10019337; scaffold184 WUBlastX LINE_RTE-X 131426 131578 37 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 111718 112086 77 - . . scaffold267 GLEAN mRNA 109916 113407 0.999351 - . ID=CGI_10018289; scaffold43574 WUBlastX LINE_L1 275829 276149 41 - . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LTR_Copia 387960 388016 23 - . . scaffold556 GLEAN mRNA 381055 461901 0.212963 - . ID=CGI_10016808; scaffold1875 WUBlastX LINE_L2 153395 153712 88 + . . . . . -1 -1 -1 . . . scaffold817 WUBlastX LTR_Gypsy 168267 168359 22 + . . . . . -1 -1 -1 . . . scaffold43244 WUBlastX LINE_I 54114 54413 63 + . . . . . -1 -1 -1 . . . scaffold38750 WUBlastX LINE_RTE-X 3948 4133 80 + . . scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold13 WUBlastX LTR_Ngaro 169785 170000 70 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_L2 92463 92636 30 + . . . . . -1 -1 -1 . . . scaffold36716 WUBlastX DNA_Harbinger 19542 20291 56 - . . . . . -1 -1 -1 . . . scaffold64 WUBlastX DNA_Harbinger 114280 114492 79 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-X 1213026 1213250 64 - . . . . . -1 -1 -1 . . . scaffold1039 WUBlastX LINE_RTE-BovB 4409 4669 38 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_TcMar-Tc1 23598 23735 27 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_L1-Tx1 308668 308772 48 + . . . . . -1 -1 -1 . . . scaffold98 WUBlastX LTR_Copia 310039 310290 30 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_hAT 293010 293150 38 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_hAT 294759 294911 33 + . . . . . -1 -1 -1 . . . scaffold415 WUBlastX DNA_IS4EU 3709 3963 104 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX DNA_hAT-hATw 58961 59629 58 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LINE_L1 143510 143839 82 - . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_Penelope 144782 145180 45 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold1599 WUBlastX LINE_L1-Tx1 594826 595011 85 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 811305 811595 57 + . . . . . -1 -1 -1 . . . scaffold33026 WUBlastX DNA_hAT-Tip100 4012 4113 21 - . . . . . -1 -1 -1 . . . scaffold80 WUBlastX LTR_Gypsy-Cigr 9681 10112 107 + . . . . . -1 -1 -1 . . . scaffold42190 WUBlastX LINE_CR1-L2 145968 146390 84 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Ngaro 361130 361270 25 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LTR_Ngaro 361266 361346 34 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX LTR_Gypsy 373704 374096 72 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 284115 284270 33 + . . . . . -1 -1 -1 . . . scaffold527 WUBlastX LINE_L1 309825 310070 32 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-X 218005 218313 26 - . . . . . -1 -1 -1 . . . scaffold175 WUBlastX LINE_RTE-X 526397 526486 49 - . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy-Cigr 131707 132183 113 - . . . . . -1 -1 -1 . . . scaffold35926 WUBlastX DNA_hAT-Ac 27438 28697 31 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-BovB 202585 202938 46 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold138 WUBlastX LINE_L1 28319 28582 41 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold1098 WUBlastX LTR_Pao 70554 70937 23 + . . scaffold1098 GLEAN mRNA 56507 72093 1 - . ID=CGI_10010795; scaffold99 WUBlastX DNA_IS4EU 107897 108253 100 + . . scaffold99 GLEAN mRNA 106780 117604 0.544851 - . ID=CGI_10021191; scaffold1665 WUBlastX LTR_Gypsy 84195 84266 21 + . . . . . -1 -1 -1 . . . scaffold41884 WUBlastX LINE_L1-Tx1 95191 95823 97 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_RTE-X 131384 131587 28 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_Proto2 107171 107497 38 + . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_CR1-L2 272210 272803 138 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy 283828 284388 87 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX DNA_Maverick 90653 90883 147 + . . . . . -1 -1 -1 . . . scaffold1001 WUBlastX LINE_RTE-X 129079 129180 40 - . . scaffold1001 GLEAN mRNA 107697 137690 0.433806 + . ID=CGI_10007119; scaffold101 WUBlastX LINE_RTE-BovB 632661 632858 32 - . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LTR_Gypsy 181107 181619 131 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_Gypsy 142660 142752 22 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold424 WUBlastX DNA_hAT-Ac 94424 94828 89 + . . scaffold424 GLEAN mRNA 91671 98594 0.990391 - . ID=CGI_10014353; scaffold50 WUBlastX DNA_hAT-Blackja 179828 180385 109 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_Jockey 76040 76336 23 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_L1-Tx1 269982 270050 31 + . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_L1-Tx1 37616 38197 119 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold1730 WUBlastX LINE_RTE-X 212444 213406 101 + . . . . . -1 -1 -1 . . . scaffold36806 WUBlastX LINE_RTE-BovB 1067 1213 62 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 9645 9788 42 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX DNA_PiggyBac 458677 459069 107 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LTR_Gypsy 399441 399527 25 - . . scaffold588 GLEAN mRNA 392510 405723 0.983024 + . ID=CGI_10016225; scaffold1883 WUBlastX LINE_RTE-X 193853 196123 786 - . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_RTE-X 24830 25156 106 - . . scaffold616 GLEAN mRNA 2988 39761 0.690684 - . ID=CGI_10015383; scaffold41700 WUBlastX LINE_CR1 110101 111399 992 + . . scaffold41700 GLEAN mRNA 111010 111507 0.6496 + . ID=CGI_10005504; scaffold531 WUBlastX LTR_Gypsy-Cigr 336917 337417 141 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy-Cigr 327839 327958 24 - . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LTR_Gypsy 73005 73130 39 - . . . . . -1 -1 -1 . . . scaffold44098 WUBlastX LINE_RTE-X 79076 79231 44 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_RTE-X 176684 177205 70 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_CR1-L2 1071346 1071489 81 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_DIRS 163718 164014 163 - . . . . . -1 -1 -1 . . . scaffold605 WUBlastX RC_Helitron 19412 19579 27 + . . . . . -1 -1 -1 . . . scaffold38672 WUBlastX LINE_L1-Tx1 7809 9515 986 - . . scaffold38672 GLEAN mRNA 3788 17200 0.99899 + . ID=CGI_10002887; scaffold43 WUBlastX LTR_Pao 78173 78487 143 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 78487 79485 68 - . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_CR1 17519 18739 106 + . . . . . -1 -1 -1 . . . scaffold1616 WUBlastX LTR_Ngaro 22710 23447 93 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1 42938 43102 44 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LINE_RTE-X 135122 135274 118 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LINE_L1-Tx1 302734 303399 114 + . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX DNA_Maverick 43760 45175 723 + . . . . . -1 -1 -1 . . . scaffold1440 WUBlastX DNA_Maverick 45294 45839 415 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_DIRS 470295 471194 61 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 462549 462785 156 - . . . . . -1 -1 -1 . . . scaffold38654 WUBlastX LINE_Penelope 35348 35428 44 - . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_L1-Tx1 1080474 1082891 770 + . . scaffold337 GLEAN mRNA 1058886 1083021 0.758954 + . ID=CGI_10028091; scaffold337 WUBlastX LINE_L1-Tx1 1082959 1083969 41 + . . scaffold337 GLEAN mRNA 1058886 1083021 0.758954 + . ID=CGI_10028091; scaffold1016 WUBlastX LINE_CR1-L2 419797 420465 134 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1674037 1674399 146 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_Crypton 536600 536827 47 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_Crypton 536818 537372 91 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_Crypton 538265 538474 38 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_L1 306363 306545 63 + . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold1021 WUBlastX DNA_TcMar-Fot1 201930 202310 158 - . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX DNA_TcMar-Fot1 202321 202638 70 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Gypsy 628144 631476 1353 + . . . . . -1 -1 -1 . . . scaffold1732 WUBlastX LTR_Pao 24052 24141 41 + . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_CR1 48409 48954 105 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LINE_L2 55363 55446 35 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX DNA_IS4EU 312730 312867 20 + . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LINE_L1 8046 8696 196 - . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX DNA_TcMar-Tc1 145547 146065 183 + . . . . . -1 -1 -1 . . . scaffold41530 WUBlastX LINE_L2 9953 10279 44 + . . . . . -1 -1 -1 . . . scaffold41530 WUBlastX LINE_L2 7864 7956 30 + . . . . . -1 -1 -1 . . . scaffold42198 WUBlastX LTR_Gypsy 91951 92136 117 + . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_Proto2 109939 110322 32 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_RTE-X 356213 356818 137 + . . scaffold121 GLEAN mRNA 354873 363377 0.998475 - . ID=CGI_10025644; scaffold75 WUBlastX RC_Helitron 91597 92172 85 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_Harbinger 680067 680525 101 + . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold1347 WUBlastX LINE_RTE-X 141555 141758 114 + . . scaffold1347 GLEAN mRNA 133564 144148 0.49238 + . ID=CGI_10012974; scaffold1347 WUBlastX LINE_RTE-X 142012 142251 41 + . . scaffold1347 GLEAN mRNA 133564 144148 0.49238 + . ID=CGI_10012974; scaffold286 WUBlastX LINE_L1-Tx1 84752 87985 1493 - . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LINE_RTE-BovB 316279 316581 48 + . . . . . -1 -1 -1 . . . scaffold948 WUBlastX LINE_RTE-BovB 317709 317891 75 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LINE_RTE-X 576166 576435 38 - . . scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold38066 WUBlastX DNA_hAT-Tip100 4960 5295 61 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_DIRS 76542 76979 230 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_Harbinger 391120 391524 245 - . . . . . -1 -1 -1 . . . scaffold40454 WUBlastX DNA_TcMar-Tc1 85794 86804 212 - . . scaffold40454 GLEAN mRNA 83347 90444 1 - . ID=CGI_10004122; scaffold315 WUBlastX LINE_RTE-X 508607 509386 96 - . . scaffold315 GLEAN mRNA 498248 518855 0.999027 + . ID=CGI_10020433; scaffold40010 WUBlastX DNA_Maverick 955 1356 237 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX DNA_TcMar-Marin 11196 11627 66 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LTR_Gypsy-Cigr 493597 494346 176 + . . . . . -1 -1 -1 . . . scaffold36664 WUBlastX LTR_Gypsy 27711 27815 58 + . . . . . -1 -1 -1 . . . C31762 WUBlastX LINE_L1-Tx1 4325 4936 66 - . . . . . -1 -1 -1 . . . C31762 WUBlastX LINE_L1-Tx1 5106 6782 963 - . . . . . -1 -1 -1 . . . C31762 WUBlastX LINE_L1-Tx1 6767 7456 316 - . . . . . -1 -1 -1 . . . C31762 WUBlastX LINE_L1-Tx1 7441 7791 195 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 416599 416772 59 + . . scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold241 WUBlastX LTR_Gypsy 282519 282944 250 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Copia 336907 337416 245 + . . . . . -1 -1 -1 . . . scaffold43194 WUBlastX DNA_IS4EU 5100 5642 267 + . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LTR_Ngaro 648167 648370 82 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold1785 WUBlastX LTR_Ngaro 648412 648558 26 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold370 WUBlastX DNA_Maverick 825013 825153 24 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Pao 4755 4979 38 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 101004 101534 59 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_RTE-X 180566 181765 173 - . . scaffold160 GLEAN mRNA 177779 208943 0.919015 - . ID=CGI_10020578; C33496 WUBlastX LINE_RTE-X 4702 4974 78 + . . . . . -1 -1 -1 . . . scaffold38580 WUBlastX DNA_TcMar-Marin 55319 55528 153 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_RTE-X 360175 360471 119 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_TcMar-Tc1 584955 585026 48 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_L1 393093 393203 24 + . . scaffold1900 GLEAN mRNA 384856 401407 0.999777 - . ID=CGI_10017347; scaffold1180 WUBlastX LTR_DIRS 24369 24659 93 + . . scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold833 WUBlastX DNA_TcMar-Marin 407055 407405 220 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX RC_Helitron 1023564 1024007 21 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX RC_Helitron 1024015 1024554 233 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX RC_Helitron 1027401 1028867 1212 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX RC_Helitron 1028803 1029000 99 + . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_Harbinger 717133 717381 202 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 455980 456426 109 - . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold1870 WUBlastX LINE_RTE-X 75277 75924 179 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 551479 552228 279 - . . scaffold1018 GLEAN mRNA 547902 567181 0.39343 + . ID=CGI_10019779; scaffold433 WUBlastX LTR_Gypsy 1204090 1204227 31 - . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 328628 328840 46 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 499970 500101 21 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX LTR_Gypsy 42445 42840 212 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_L1-Tx1 7394 7630 37 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_L1-Tx1 362064 362381 29 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1 260537 260707 79 + . . . . . -1 -1 -1 . . . scaffold37424 WUBlastX DNA_Harbinger 12931 13098 42 + . . . . . -1 -1 -1 . . . scaffold226 WUBlastX DNA_TcMar-Tc1 23620 23757 21 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Ngaro 103788 104528 249 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 597048 597485 37 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_Gypsy 77841 78443 399 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Harbinger 93781 94764 336 + . . scaffold267 GLEAN mRNA 90014 96204 0.998586 - . ID=CGI_10018285; scaffold34098 WUBlastX DNA_Harbinger 6626 7345 376 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 50871 51185 142 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX LTR_Gypsy 52304 52618 142 + . . . . . -1 -1 -1 . . . scaffold43146 WUBlastX LINE_L1-Tx1 7403 8038 125 + . . . . . -1 -1 -1 . . . scaffold883 WUBlastX LINE_L2 4725 5429 409 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LTR_Gypsy 28361 28492 43 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX DNA_Harbinger 748742 749143 77 - . . scaffold678 GLEAN mRNA 740088 752113 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 748742 749143 77 - . . scaffold678 GLEAN mRNA 742489 752098 0.987721 + . ID=CGI_10026378; scaffold829 WUBlastX LINE_L1-Tx1 329061 329492 120 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 621461 621706 91 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 622925 623305 217 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 257255 257425 68 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-BovB 258609 258683 31 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_CR1-L2 302068 302820 382 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_CR1-L2 200723 201283 301 - . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LINE_L1-Tx1 59312 60874 137 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_L1-Tx1 211036 211659 100 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold544 WUBlastX LINE_L1-Tx1 211658 212224 273 - . . scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; C29438 WUBlastX LINE_RTE-X 3544 3996 110 + . . C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; scaffold221 WUBlastX DNA_TcMar-Tc1 137623 138222 298 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX DNA_TcMar-Tc1 138243 138404 33 - . . . . . -1 -1 -1 . . . scaffold41452 WUBlastX LINE_L1-Tx1 85973 86698 435 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1672591 1673340 195 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX DNA_Maverick 10452 11402 403 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L1 1828 2529 158 - . . . . . -1 -1 -1 . . . scaffold36450 WUBlastX LINE_L1 2540 3355 205 - . . . . . -1 -1 -1 . . . scaffold1054 WUBlastX DNA_Kolobok 332859 333011 88 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold150 WUBlastX LINE_L1 539670 539789 46 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX DNA_Kolobok 377084 377236 88 - . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L1 136541 136762 77 - . . . . . -1 -1 -1 . . . scaffold37046 WUBlastX LTR_Pao 39494 40213 532 - . . . . . -1 -1 -1 . . . C35172 WUBlastX DNA_En-Spm 1555 3507 411 + . . C35172 GLEAN mRNA 161 6399 0.907032 + . ID=CGI_10001431; scaffold1423 WUBlastX LTR_Ngaro 754235 754729 347 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 754732 755070 172 - . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LTR_DIRS 28214 29167 460 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LTR_Pao 320682 320759 20 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX DNA_Maverick 759061 759990 266 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold121 WUBlastX LINE_RTE-BovB 812736 812948 30 + . . . . . -1 -1 -1 . . . scaffold35344 WUBlastX RC_Helitron 13603 13773 88 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 53296 54825 276 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_L1-Tx1 55259 55498 62 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 309330 310250 144 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 316696 317616 144 + . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LTR_Pao 219114 219782 217 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Gypsy 237939 238031 22 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LTR_Gypsy 295431 295523 22 - . . . . . -1 -1 -1 . . . scaffold35138 WUBlastX LTR_Gypsy 5995 6087 22 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 642403 642495 22 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX LINE_L1-Tx1 60456 60605 37 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-X 237666 238106 101 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-X 239964 240443 52 - . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 317633 317923 152 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 318240 318635 231 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 310267 310557 152 + . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LTR_Gypsy 310874 311269 231 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_L1-Tx1 1294959 1295105 22 - . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LTR_Pao 944897 945712 116 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LINE_L1 58373 58741 76 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LTR_Gypsy 136805 137428 342 + . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LTR_Pao 622239 622523 148 - . . scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold43388 WUBlastX LINE_RTE-X 230814 231272 271 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold38116 WUBlastX LTR_Gypsy 15878 16477 617 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Ngaro 459670 459954 135 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Ngaro 158738 159379 419 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 7834 8076 47 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LTR_Pao 80909 81259 329 + . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LTR_Pao 81750 82214 283 + . . . . . -1 -1 -1 . . . scaffold43932 WUBlastX DNA_En-Spm 366187 368007 808 - . . scaffold43932 GLEAN mRNA 361197 374116 0.888376 - . ID=CGI_10014131; scaffold444 WUBlastX LINE_RTE-X 104071 105681 709 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_RTE-X 610127 611710 720 - . . . . . -1 -1 -1 . . . C24346 WUBlastX LINE_L1-Tx1 2098 2688 204 + . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_RTE-X 107775 108152 203 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-X 108211 108702 351 - . . scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold37124 WUBlastX LTR_Copia 29146 29295 28 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Copia 211022 211867 25 + . . scaffold433 GLEAN mRNA 203495 226770 0.837765 + . ID=CGI_10027060; scaffold1854 WUBlastX LTR_Copia 97345 97548 22 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Copia 753299 753694 29 + . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LTR_Gypsy 41628 42320 34 - . . . . . -1 -1 -1 . . . scaffold34282 WUBlastX LINE_L1 7973 8038 23 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold1424 WUBlastX LTR_Copia 25954 26082 37 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_MuDR 203138 203230 79 - . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_L1 53466 53795 28 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_hAT-Tip100 113175 113360 77 - . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 32406 32528 79 - . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_CR1 80302 80973 30 + . . . . . -1 -1 -1 . . . C21812 WUBlastX LINE_CR1 968 1171 72 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 550270 550488 56 - . . . . . -1 -1 -1 . . . scaffold43240 WUBlastX LINE_CR1-L2 96121 96438 53 - . . . . . -1 -1 -1 . . . scaffold930 WUBlastX LINE_CR1-L2 252207 252491 60 + . . . . . -1 -1 -1 . . . scaffold1509 WUBlastX LINE_CR1 5442 5561 43 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_CR1 320730 320822 28 + . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LINE_CR1-L2 44105 44320 75 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_CR1 137047 137226 35 - . . . . . -1 -1 -1 . . . scaffold377 WUBlastX LINE_CR1 179230 179535 37 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LINE_L2 15904 16044 77 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 375377 375631 58 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L2 910964 911542 22 - . . scaffold471 GLEAN mRNA 900045 946913 0.362984 - . ID=CGI_10027028; scaffold39880 WUBlastX LINE_CR1 43016 43300 39 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_CR1 346897 347172 63 + . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_CR1 169906 170277 48 + . . scaffold1 GLEAN mRNA 163980 185527 0.742263 + . ID=CGI_10013469; scaffold58 WUBlastX LINE_Jockey 325655 325702 26 + . . . . . -1 -1 -1 . . . C29982 WUBlastX LTR_ERV1 6182 6505 74 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 179780 179986 27 + . . . . . -1 -1 -1 . . . scaffold39500 WUBlastX LTR_Gypsy 22278 22739 32 - . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LTR_Gypsy 26538 26768 71 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Gypsy 109546 110319 20 + . . scaffold602 GLEAN mRNA 109450 110514 0.590147 + . ID=CGI_10023173; scaffold664 WUBlastX LTR_DIRS 515103 515357 71 - . . . . . -1 -1 -1 . . . scaffold260 WUBlastX LTR_DIRS 79950 80015 22 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 176089 176592 79 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1822 WUBlastX LTR_Gypsy 25961 26110 51 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 213077 213301 64 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX DNA_Harbinger 160543 160788 33 + . . . . . -1 -1 -1 . . . scaffold33056 WUBlastX DNA_Harbinger 7253 7732 70 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX DNA_hAT-Ac 403793 403966 72 + . . . . . -1 -1 -1 . . . scaffold76 WUBlastX DNA_hAT-Blackja 78341 78637 35 - . . . . . -1 -1 -1 . . . scaffold1717 WUBlastX DNA_hAT-hATw 341673 342332 29 - . . scaffold1717 GLEAN mRNA 340986 342620 0.999372 - . ID=CGI_10013403; scaffold1652 WUBlastX RC_Helitron 224905 225096 45 - . . scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold490 WUBlastX RC_Helitron 142708 142926 60 + . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_IS4EU 406783 407070 31 - . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_Kolobok-IS4 27014 27352 60 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX DNA_TcMar-Marin 122684 122902 20 + . . scaffold208 GLEAN mRNA 121781 129238 1 - . ID=CGI_10010027; scaffold43182 WUBlastX LTR_ERV1 166389 166472 55 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold37664 WUBlastX LINE_L2 29970 30701 40 + . . scaffold37664 GLEAN mRNA 26553 34965 0.581431 + . ID=CGI_10002440; scaffold1221 WUBlastX LINE_L1 595472 595795 44 - . . . . . -1 -1 -1 . . . scaffold33036 WUBlastX DNA_TcMar-Marin 11477 11740 32 + . . scaffold33036 GLEAN mRNA 1876 11676 0.76238 + . ID=CGI_10000985; scaffold144 WUBlastX DNA_TcMar-Marin 11593 11820 56 - . . . . . -1 -1 -1 . . . scaffold38422 WUBlastX LINE_L2 30377 30535 46 - . . scaffold38422 GLEAN mRNA 27073 31824 0.999996 - . ID=CGI_10002764; scaffold1154 WUBlastX LINE_LOA 1151712 1151780 22 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX DNA_TcMar-Fot1 1863119 1863442 65 + . . scaffold22 GLEAN mRNA 1863347 1863687 0.647996 + . ID=CGI_10028937; scaffold37740 WUBlastX DNA_MuDR 10940 11311 25 - . . scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold31756 WUBlastX LINE_Penelope 9425 9610 41 + . . . . . -1 -1 -1 . . . scaffold1830 WUBlastX LINE_Penelope 38720 38860 69 + . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_P 29838 29954 53 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold1020 WUBlastX DNA_P 11337 11453 53 + . . scaffold1020 GLEAN mRNA 10748 11618 1 + . ID=CGI_10012847; scaffold236 WUBlastX DNA_P 227759 228019 72 + . . scaffold236 GLEAN mRNA 227720 229392 0.996819 + . ID=CGI_10018138; scaffold937 WUBlastX LINE_Penelope 279 443 64 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-BovB 39572 39883 37 - . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LINE_RTE-BovB 91829 92005 60 + . . . . . -1 -1 -1 . . . scaffold613 WUBlastX LINE_RTE-BovB 92469 92645 60 + . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-BovB 283676 283873 59 - . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_RTE-BovB 134046 134378 75 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_RTE-X 1249358 1249573 29 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-BovB 749056 749172 55 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_Maverick 209107 209364 54 - . . scaffold1832 GLEAN mRNA 208019 210157 0.999949 - . ID=CGI_10018469; scaffold1832 WUBlastX LINE_RTE-X 301714 301908 45 - . . . . . -1 -1 -1 . . . scaffold487 WUBlastX LINE_RTE-X 105937 106044 47 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LINE_RTE-X 852266 852370 31 + . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LINE_RTE-X 147714 147839 35 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LINE_RTE-X 783528 783824 32 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 101369 101632 29 - . . . . . -1 -1 -1 . . . scaffold1745 WUBlastX LINE_RTE-X 34975 35214 39 - . . scaffold1745 GLEAN mRNA 32786 58007 0.99601 - . ID=CGI_10005404; scaffold41636 WUBlastX LINE_RTE-X 95601 95789 53 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LINE_RTE-X 148119 148403 22 - . . . . . -1 -1 -1 . . . scaffold42904 WUBlastX LINE_RTE-X 103409 103585 33 + . . scaffold42904 GLEAN mRNA 87880 118208 0.944676 - . ID=CGI_10008103; scaffold41296 WUBlastX LINE_RTE-X 107200 107610 32 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_RTE-X 86308 86574 61 - . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold880 WUBlastX LINE_RTE-X 687336 687680 24 - . . . . . -1 -1 -1 . . . scaffold416 WUBlastX LINE_RTE-X 160535 160762 33 - . . scaffold416 GLEAN mRNA 138143 163837 0.657495 + . ID=CGI_10014740; scaffold1397 WUBlastX LTR_Gypsy 158395 158439 20 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_RTE-X 345058 345228 60 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_TcMar-Tc1 465411 465524 33 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_Sola 521516 521833 66 - . . . . . -1 -1 -1 . . . C29882 WUBlastX LTR_Ngaro 1826 2122 36 + . . . . . -1 -1 -1 . . . C25612 WUBlastX LTR_Gypsy-Cigr 2669 2812 70 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy-Cigr 73002 73175 68 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold204 WUBlastX LTR_Gypsy 755901 756059 23 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_CR1-L2 153062 153415 44 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_CR1-L2 328869 328994 90 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LINE_CR1-L2 888715 888918 78 + . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LINE_CR1-L2 44105 44251 80 - . . . . . -1 -1 -1 . . . scaffold168 WUBlastX LINE_CR1 20260 20466 21 - . . scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold747 WUBlastX LTR_Copia 398692 399048 41 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_L2 75282 75674 63 + . . . . . -1 -1 -1 . . . scaffold38020 WUBlastX LTR_Ngaro 38502 38663 86 + . . . . . -1 -1 -1 . . . scaffold35438 WUBlastX LTR_Gypsy 22332 22679 51 + . . scaffold35438 GLEAN mRNA 22653 23117 0.996819 + . ID=CGI_10001515; scaffold35438 WUBlastX LTR_Gypsy 22332 22679 51 + . . scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold35960 WUBlastX DNA_hAT-Tip100 11219 11398 83 + . . scaffold35960 GLEAN mRNA 415 14469 0.999984 - . ID=CGI_10001702; scaffold408 WUBlastX DNA_Harbinger 316519 316653 50 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LTR_Gypsy 76054 76320 59 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_Penelope 70688 70891 28 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_L1 129541 130047 24 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_RTE-X 214729 214803 27 - . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Maverick 4356 4565 99 - . . . . . -1 -1 -1 . . . scaffold1235 WUBlastX LINE_RTE-X 101177 101239 21 + . . scaffold1235 GLEAN mRNA 100102 129172 0.450725 + . ID=CGI_10011833; scaffold1235 WUBlastX LINE_RTE-X 101863 102075 80 + . . scaffold1235 GLEAN mRNA 100102 129172 0.450725 + . ID=CGI_10011833; scaffold198 WUBlastX LINE_CR1 621659 621730 21 - . . . . . -1 -1 -1 . . . scaffold1230 WUBlastX LINE_RTE-X 2765 2920 54 + . . . . . -1 -1 -1 . . . scaffold1439 WUBlastX LINE_RTE-X 49420 49785 41 - . . . . . -1 -1 -1 . . . scaffold1723 WUBlastX LINE_RTE-X 18271 18414 77 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_RTE-X 70476 70706 51 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LINE_L1 301204 301836 34 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_CR1 276956 277120 69 + . . . . . -1 -1 -1 . . . scaffold37790 WUBlastX LTR_Ngaro 9808 10071 69 - . . scaffold37790 GLEAN mRNA 1900 11693 1 - . ID=CGI_10002498; scaffold1699 WUBlastX LTR_Gypsy 57771 58313 75 + . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_RTE-X 166506 166577 28 - . . . . . -1 -1 -1 . . . scaffold43782 WUBlastX LINE_RTE-X 166606 166764 59 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 166928 167422 65 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_RTE-X 671796 672149 53 + . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_RTE-X 531855 532316 30 + . . . . . -1 -1 -1 . . . C26878 WUBlastX DNA_Harbinger 3100 3339 21 - . . . . . -1 -1 -1 . . . scaffold43426 WUBlastX LINE_L1-Tx1 143271 143393 55 - . . . . . -1 -1 -1 . . . scaffold34222 WUBlastX LINE_L2 13047 13424 47 - . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_L2 78359 78916 42 - . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX LINE_CR1 45840 46025 63 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_L2 707373 707897 75 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Ngaro 3459 3824 50 - . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LTR_Ngaro 154373 154525 92 - . . . . . -1 -1 -1 . . . scaffold127 WUBlastX DNA_Crypton 76934 77515 94 + . . scaffold127 GLEAN mRNA 76604 77650 0.841401 + . ID=CGI_10004407; scaffold38780 WUBlastX LTR_Gypsy 12162 12605 81 + . . scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold449 WUBlastX LTR_Gypsy 133883 134410 94 - . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LTR_Copia 67905 67964 32 - . . . . . -1 -1 -1 . . . scaffold680 WUBlastX LTR_Ngaro 28611 28697 41 + . . . . . -1 -1 -1 . . . scaffold580 WUBlastX DNA_Harbinger 111821 112108 66 - . . . . . -1 -1 -1 . . . scaffold999 WUBlastX DNA_Kolobok-IS4 165695 166144 93 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_Kolobok 148412 148804 69 - . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold1599 WUBlastX LINE_Penelope 246074 246589 57 - . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold3 WUBlastX LINE_RTE-X 50769 51032 71 + . . scaffold3 GLEAN mRNA 34173 61876 0.984416 - . ID=CGI_10027268; scaffold3 WUBlastX LINE_RTE-X 50769 51032 71 + . . scaffold3 GLEAN mRNA 47892 52805 0.999676 + . ID=CGI_10027269; scaffold72 WUBlastX LINE_RTE-X 167214 167333 67 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 3819 3980 90 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX LINE_RTE-BovB 8685 9074 108 - . . scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold867 WUBlastX LINE_RTE-X 655172 655690 54 + . . . . . -1 -1 -1 . . . scaffold1611 WUBlastX LINE_RTE-BovB 114102 114332 93 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_RTE-X 398328 398624 85 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LINE_CR1 5759 6082 38 + . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_DIRS 564491 564697 84 - . . scaffold408 GLEAN mRNA 551872 569972 0.499918 - . ID=CGI_10023249; scaffold1018 WUBlastX LTR_Ngaro 509125 509724 86 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LTR_Gypsy 53776 54414 36 - . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold392 WUBlastX LINE_L1 479210 479383 26 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_RTE-BovB 235824 236000 45 - . . . . . -1 -1 -1 . . . scaffold38310 WUBlastX LINE_RTE-X 17514 17777 66 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 213117 213332 92 - . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX LINE_L1-Tx1 125254 125403 29 - . . . . . -1 -1 -1 . . . scaffold40564 WUBlastX LINE_DRE 10046 10123 23 + . . scaffold40564 GLEAN mRNA 6674 28756 0.488599 + . ID=CGI_10004207; scaffold524 WUBlastX DNA_TcMar-Tc1 276086 276286 79 + . . . . . -1 -1 -1 . . . scaffold209 WUBlastX DNA_hAT-Charlie 258759 259085 92 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold1858 WUBlastX DNA_TcMar-Tc1 170032 170205 77 + . . . . . -1 -1 -1 . . . scaffold685 WUBlastX LINE_RTE-X 52579 52983 80 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_Maverick 103105 103419 85 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 347139 347258 22 + . . scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold675 WUBlastX LINE_Penelope 45583 45726 20 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-BovB 244034 244117 23 - . . scaffold6 GLEAN mRNA 243521 244840 0.993546 - . ID=CGI_10022303; scaffold1896 WUBlastX LINE_L1-Tx1 111097 111483 33 + . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 30634 30762 77 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Ngaro 263985 264428 76 + . . . . . -1 -1 -1 . . . scaffold34356 WUBlastX LTR_Ngaro 7621 8229 73 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Copia 139625 139762 26 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold40928 WUBlastX LINE_CR1 39772 40593 90 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold1840 WUBlastX LTR_Gypsy 62654 63253 117 - . . . . . -1 -1 -1 . . . scaffold1260 WUBlastX DNA_Harbinger 87947 88189 75 + . . . . . -1 -1 -1 . . . scaffold1260 WUBlastX DNA_Harbinger 88330 88425 25 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX DNA_Harbinger 225939 226079 20 - . . . . . -1 -1 -1 . . . scaffold986 WUBlastX DNA_Harbinger 138104 138244 20 - . . scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold34942 WUBlastX DNA_Kolobok 10169 10333 21 + . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 10169 10333 21 + . . scaffold34942 GLEAN mRNA 10169 10981 1 + . ID=CGI_10001380; scaffold1805 WUBlastX LINE_L1 165657 166232 71 + . . . . . -1 -1 -1 . . . C30226 WUBlastX DNA_Harbinger 2785 3717 786 + . . . . . -1 -1 -1 . . . C30226 WUBlastX DNA_Harbinger 3693 3938 184 + . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LINE_RTE-X 38100 39212 226 + . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LINE_RTE-X 39345 39737 260 + . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LINE_RTE-X 39722 40270 230 + . . . . . -1 -1 -1 . . . scaffold1308 WUBlastX LINE_RTE-X 40258 40752 187 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy-Cigr 148929 149450 146 + . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LTR_Ngaro 3852 4160 35 + . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX DNA_IS4EU 15302 15406 50 + . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX DNA_IS4EU 15947 16018 39 + . . . . . -1 -1 -1 . . . scaffold34308 WUBlastX DNA_IS4EU 16172 16435 64 + . . . . . -1 -1 -1 . . . scaffold598 WUBlastX DNA_TcMar-Pogo 13851 14351 90 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 147339 147962 302 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LTR_Gypsy 528633 528731 43 + . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LTR_Gypsy 310349 310873 115 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LTR_Gypsy 310873 312042 893 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX DNA_hAT-Ac 91897 92229 59 - . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold1589 WUBlastX LTR_Gypsy 212067 212540 159 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LTR_Ngaro 459459 459617 74 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_DIRS 149630 150088 65 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_MuDR 321873 322181 97 + . . scaffold101 GLEAN mRNA 308692 328638 0.999351 + . ID=CGI_10021645; scaffold101 WUBlastX DNA_MuDR 321873 322181 97 + . . scaffold101 GLEAN mRNA 312467 328385 0.843729 - . ID=CGI_10021646; scaffold39858 WUBlastX DNA_Kolobok 11040 11279 60 - . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold42530 WUBlastX LTR_Pao 35628 35837 50 - . . . . . -1 -1 -1 . . . scaffold38162 WUBlastX LTR_Gypsy 33542 34606 623 + . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Ngaro 263528 263806 117 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX DNA_hAT-Blackja 437791 438021 50 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L1-Tx1 55472 55570 24 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Pao 100758 101144 189 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LTR_Gypsy 596199 597104 122 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_Harbinger 10035 10196 99 - . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LINE_L1-Tx1 62835 63611 149 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX DNA_TcMar-Tc2 86641 87246 130 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LTR_Pao 179681 179896 146 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LTR_Gypsy 472269 472457 82 + . . . . . -1 -1 -1 . . . scaffold1166 WUBlastX LTR_Ngaro 126445 127119 131 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LTR_Gypsy 84947 85462 166 + . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_L1 242000 242758 152 - . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_L1-Tx1 10841 10948 45 + . . . . . -1 -1 -1 . . . scaffold1521 WUBlastX DNA_TcMar-Tc1 497459 497866 171 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 229989 230189 48 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_Harbinger 403783 404427 192 + . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold1588 WUBlastX LINE_L1-Tx1 149574 149927 136 - . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX DNA_MuDR 14808 15254 62 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA_MuDR 15821 16027 60 - . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1423 WUBlastX LTR_Ngaro 690332 690478 51 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 690705 690935 54 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LTR_Ngaro 690925 691167 84 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_RTE-X 119988 120128 21 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LINE_RTE-X 121074 121253 49 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Gypsy 121225 122337 192 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_L1 197158 198360 102 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LINE_CR1-L2 853374 856406 1436 + . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX LTR_Gypsy 116406 119873 1664 + . . . . . -1 -1 -1 . . . scaffold987 WUBlastX LINE_L1-Tx1 73115 74455 90 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_L1 236770 236877 39 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold790 WUBlastX LINE_L1-Tx1 127523 127669 80 + . . . . . -1 -1 -1 . . . scaffold1824 WUBlastX LTR_DIRS 97379 97867 142 + . . . . . -1 -1 -1 . . . scaffold160 WUBlastX DNA_Crypton 499509 500123 150 + . . scaffold160 GLEAN mRNA 498862 500159 0.994424 + . ID=CGI_10020604; scaffold160 WUBlastX DNA_Crypton 500173 500418 86 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_hAT-Tip100 562081 562482 49 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_Penelope 69451 69594 122 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LINE_Penelope 69849 70112 48 - . . . . . -1 -1 -1 . . . scaffold715 WUBlastX LTR_Gypsy 65036 65575 133 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 205873 207711 1682 - . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Pao 77998 78312 44 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_IS4EU 1243965 1244417 221 + . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LINE_RTE-X 291986 292576 142 + . . scaffold1865 GLEAN mRNA 265949 318343 0.640148 - . ID=CGI_10013547; scaffold35598 WUBlastX LTR_Gypsy 5144 6577 969 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-BovB 368570 369001 333 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-BovB 368929 370359 1001 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-BovB 370379 370921 446 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_RTE-BovB 370863 371006 128 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L2 649560 650450 199 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LTR_Gypsy 37022 38368 263 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX DNA_IS4EU 313263 313532 69 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX DNA_Sola 635513 637102 51 - . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold38532 WUBlastX LTR_Gypsy 33222 33503 148 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LINE_L1-Tx1 90004 90090 20 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_CR1 127873 128097 166 + . . scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold1315 WUBlastX LINE_RTE-X 176460 176876 57 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LTR_Gypsy 918587 918895 246 + . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX DNA_IS4EU 29638 29799 114 - . . . . . -1 -1 -1 . . . scaffold1774 WUBlastX DNA_IS4EU 30198 30668 169 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L2 544776 545027 37 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold1785 WUBlastX LINE_L2 545035 545199 36 + . . scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold6 WUBlastX LTR_Pao 127458 128726 998 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 130255 130353 65 + . . scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold3 WUBlastX LINE_CR1 137259 137645 38 + . . . . . -1 -1 -1 . . . C28702 WUBlastX LTR_Gypsy 4486 5061 202 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 318780 319061 57 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1-Tx1 85948 87042 78 + . . . . . -1 -1 -1 . . . scaffold41568 WUBlastX LINE_L1-Tx1 58179 58571 110 + . . . . . -1 -1 -1 . . . scaffold32 WUBlastX DNA_IS4EU 201720 202214 208 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 160372 160896 67 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX DNA_TcMar-Tc1 152530 152715 38 - . . scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold150 WUBlastX LTR_DIRS 1354630 1355463 129 - . . scaffold150 GLEAN mRNA 1351630 1358824 0.998084 - . ID=CGI_10028676; scaffold1154 WUBlastX LINE_L1-Tx1 571770 572099 192 - . . . . . -1 -1 -1 . . . scaffold1409 WUBlastX LINE_RTE-BovB 110860 111786 332 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX DNA_Kolobok-IS4 253069 254211 287 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_R2-Hero 675798 677198 367 - . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LTR_Gypsy 66076 66705 128 - . . scaffold1096 GLEAN mRNA 61473 82912 0.788854 + . ID=CGI_10006453; scaffold1157 WUBlastX LINE_RTE-X 204942 205226 47 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 702532 703149 323 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Kolobok 672867 673103 104 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Kolobok 673376 673462 27 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Kolobok 673598 673813 40 - . . scaffold880 GLEAN mRNA 673595 686654 0.926854 - . ID=CGI_10022204; scaffold880 WUBlastX DNA_Kolobok 674000 674146 59 - . . scaffold880 GLEAN mRNA 673595 686654 0.926854 - . ID=CGI_10022204; scaffold880 WUBlastX DNA_Kolobok 674610 674891 96 - . . scaffold880 GLEAN mRNA 673595 686654 0.926854 - . ID=CGI_10022204; scaffold43388 WUBlastX LINE_L1 155172 155477 105 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 106750 106965 22 - . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX LTR_Gypsy 107093 107638 322 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1-Tx1 737975 738472 48 + . . . . . -1 -1 -1 . . . C30294 WUBlastX LTR_DIRS 1714 2070 140 + . . . . . -1 -1 -1 . . . C30294 WUBlastX LTR_DIRS 2073 2144 50 + . . . . . -1 -1 -1 . . . scaffold43494 WUBlastX LTR_Ngaro 54627 56162 316 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX LINE_L1-Tx1 625430 625978 191 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L1-Tx1 735712 736017 71 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_hAT-Tip100 761000 761545 101 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_hAT-Ac 209369 210949 349 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy 84446 84565 37 + . . . . . -1 -1 -1 . . . scaffold675 WUBlastX DNA_Maverick 29567 29914 225 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_En-Spm 89285 90691 353 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_En-Spm 90688 90888 85 + . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy 801984 802322 251 - . . . . . -1 -1 -1 . . . scaffold54 WUBlastX LTR_Gypsy 802291 802611 330 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_RTE-X 869577 870146 312 - . . . . . -1 -1 -1 . . . scaffold40366 WUBlastX LTR_Gypsy 87966 88928 309 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX LTR_Ngaro 62151 62417 145 + . . . . . -1 -1 -1 . . . scaffold675 WUBlastX DNA_Maverick 28659 29183 277 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_L2 385051 385689 243 + . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LTR_Gypsy 30325 31716 181 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1-Tx1 15340 15711 225 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 16161 16424 108 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 16544 16837 56 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold43836 WUBlastX LTR_Ngaro 299507 300046 311 - . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX LTR_DIRS 98315 98740 284 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_IS4EU 431830 432531 414 + . . scaffold1009 GLEAN mRNA 430368 431934 1 + . ID=CGI_10028733; scaffold1009 WUBlastX DNA_IS4EU 432521 432658 34 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_Penelope 123370 124656 499 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 1429431 1429577 55 + . . . . . -1 -1 -1 . . . scaffold1643 WUBlastX LTR_Pao 184152 185672 529 + . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX LTR_Pao 331630 331938 125 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 332070 333143 156 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333361 333558 62 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333867 334100 96 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold22 WUBlastX LINE_L1-Tx1 1561494 1562306 449 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 1562363 1563064 144 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX LINE_RTE-X 36991 37434 81 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 955531 955635 97 + . . . . . -1 -1 -1 . . . scaffold43170 WUBlastX DNA_Zator 116010 116609 67 - . . scaffold43170 GLEAN mRNA 109769 118628 0.999676 - . ID=CGI_10009102; scaffold43170 WUBlastX DNA_Zator 116010 116609 67 - . . scaffold43170 GLEAN mRNA 114474 133457 0.997994 + . ID=CGI_10009103; scaffold751 WUBlastX LINE_L1 136624 136791 50 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LTR_Pao 943671 944258 373 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_DIRS 518657 519019 253 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_DIRS 519125 519331 74 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_DIRS 519324 520196 360 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 585568 585816 112 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LTR_Ngaro 35335 35847 337 + . . . . . -1 -1 -1 . . . scaffold38360 WUBlastX LTR_Ngaro 35838 36650 257 + . . . . . -1 -1 -1 . . . scaffold1460 WUBlastX LTR_Gypsy 8035 9120 805 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_RTE-X 719905 720717 357 - . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_CR1 78146 78691 218 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy 69993 71330 73 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LINE_L1 102731 105028 442 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_hAT-hATw 149346 149636 117 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX DNA_hAT-hATw 149630 150832 123 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LTR_Gypsy 477812 478081 190 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold1815 WUBlastX LTR_Pao 45259 46722 629 - . . scaffold1815 GLEAN mRNA 41524 49047 0.999999 + . ID=CGI_10010261; scaffold1786 WUBlastX LINE_RTE-BovB 56004 56339 38 - . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LINE_RTE-BovB 56479 57123 440 - . . . . . -1 -1 -1 . . . scaffold1786 WUBlastX LINE_RTE-BovB 57138 57803 360 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_L2 17465 17920 55 + . . . . . -1 -1 -1 . . . scaffold819 WUBlastX LINE_L2 49524 49775 45 - . . scaffold819 GLEAN mRNA 34933 54933 0.447302 + . ID=CGI_10003889; scaffold79 WUBlastX LINE_L2 255631 255876 51 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_CR1 71626 71670 23 - . . . . . -1 -1 -1 . . . scaffold1695 WUBlastX LINE_CR1 14290 14643 29 + . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_L2 72585 72647 37 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_L2 176799 177065 29 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_L2 48905 48994 39 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_L2 48979 49185 43 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LINE_L2 751624 751713 22 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX LINE_L2 274789 275142 46 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_CR1-L2 283891 283962 51 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LINE_CR1 115423 115668 27 + . . . . . -1 -1 -1 . . . scaffold38900 WUBlastX LTR_Pao 44016 44099 28 + . . . . . -1 -1 -1 . . . scaffold38900 WUBlastX LTR_Pao 44098 44253 50 + . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX LTR_Pao 262284 262478 48 - . . scaffold1127 GLEAN mRNA 249685 268945 0.834068 - . ID=CGI_10010657; scaffold711 WUBlastX LTR_Copia 16196 16369 22 - . . . . . -1 -1 -1 . . . scaffold34910 WUBlastX LTR_Copia 7379 7774 67 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LTR_Copia 70349 70744 67 - . . scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold33050 WUBlastX LTR_Gypsy 5509 5838 58 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 185452 185781 58 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX DNA_MuDR 479850 480101 78 + . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_CR1 138632 139027 70 + . . scaffold1382 GLEAN mRNA 113082 142955 0.812933 - . ID=CGI_10011173; scaffold1601 WUBlastX LINE_CR1 7575 7994 72 - . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LTR_Gypsy 237527 237838 69 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_Gypsy 204703 204843 59 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Gypsy 10492 11061 48 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LTR_Gypsy-Gmr1 605994 606185 86 + . . . . . -1 -1 -1 . . . scaffold38354 WUBlastX LTR_Gypsy 3899 4276 30 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Ngaro 450674 450820 49 - . . . . . -1 -1 -1 . . . C28676 WUBlastX LTR_Ngaro 2842 2961 65 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Ngaro 79281 79610 55 + . . . . . -1 -1 -1 . . . scaffold533 WUBlastX LTR_Ngaro 58971 59105 67 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX DNA_Crypton 101558 101884 44 - . . scaffold1891 GLEAN mRNA 99950 103024 0.647502 + . ID=CGI_10008734; scaffold1195 WUBlastX LINE_L2 290501 291139 46 - . . scaffold1195 GLEAN mRNA 290174 296026 0.541928 - . ID=CGI_10012102; scaffold1735 WUBlastX LINE_L2 17548 17697 23 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L2 202219 202371 53 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L2 81963 82223 67 + . . scaffold1093 GLEAN mRNA 77464 87990 0.558336 + . ID=CGI_10019787; scaffold489 WUBlastX LTR_Gypsy 46397 46903 60 + . . . . . -1 -1 -1 . . . scaffold38514 WUBlastX LTR_Gypsy 4085 4243 84 - . . . . . -1 -1 -1 . . . scaffold715 WUBlastX LTR_Gypsy 64588 64719 44 - . . . . . -1 -1 -1 . . . C3873 WUBlastX LTR_Gypsy 4 114 79 - . . . . . -1 -1 -1 . . . scaffold33584 WUBlastX LTR_Gypsy 13606 14238 20 + . . . . . -1 -1 -1 . . . C30872 WUBlastX LTR_Gypsy 726 1607 28 - . . . . . -1 -1 -1 . . . scaffold42112 WUBlastX DNA_hAT-hATw 51304 51669 21 - . . scaffold42112 GLEAN mRNA 50368 56260 0.999673 - . ID=CGI_10006116; scaffold1796 WUBlastX DNA_hAT-Tip100 34631 34738 48 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX RC_Helitron 478076 478141 26 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX DNA_IS4EU 45207 45305 32 - . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold43076 WUBlastX DNA_Kolobok-IS4 64487 64525 22 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_Kolobok-IS4 64545 64688 67 - . . . . . -1 -1 -1 . . . scaffold852 WUBlastX DNA_Kolobok-IS4 126724 127212 83 + . . scaffold852 GLEAN mRNA 121104 128274 1 + . ID=CGI_10012039; C29736 WUBlastX LINE_L1-Tx1 3033 3338 50 + . . . . . -1 -1 -1 . . . scaffold41762 WUBlastX DNA_Kolobok 71336 71557 47 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok-Hyd 395453 395677 27 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold1452 WUBlastX LINE_L1-Tx1 208510 208641 40 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_L1 1183002 1183175 56 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LINE_L1 212378 212740 36 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_L1 599722 599850 52 - . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold888 WUBlastX LINE_L1 325961 326092 54 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_ERVK 106835 107254 54 - . . . . . -1 -1 -1 . . . scaffold937 WUBlastX LINE_Penelope 246 443 54 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_L2 54692 54913 50 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold1062 WUBlastX LINE_L2 8530 8805 73 + . . scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold1136 WUBlastX LINE_I 45820 46434 20 + . . scaffold1136 GLEAN mRNA 45613 63125 0.999895 + . ID=CGI_10003080; scaffold41816 WUBlastX LTR_Ngaro 25246 25332 24 - . . scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold35910 WUBlastX LINE_Penelope 12992 13147 50 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LINE_Penelope 117361 117519 25 + . . . . . -1 -1 -1 . . . scaffold39758 WUBlastX LINE_RTE-X 61393 61785 40 - . . scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold38056 WUBlastX LINE_RTE-X 40825 40899 31 - . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX LINE_RTE-X 40479 40796 20 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 809352 809492 57 + . . . . . -1 -1 -1 . . . scaffold38274 WUBlastX LINE_RTE-X 16325 16621 50 + . . scaffold38274 GLEAN mRNA 16103 49739 0.512325 + . ID=CGI_10002704; scaffold86 WUBlastX LINE_RTE-X 800623 800715 52 + . . . . . -1 -1 -1 . . . scaffold1845 WUBlastX DNA_Maverick 301491 301733 72 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX DNA_TcMar-Fot1 18989 19306 42 + . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX DNA_Maverick 62260 62610 33 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_NOF 144970 145362 68 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_ERVK 185203 185364 34 - . . scaffold351 GLEAN mRNA 182214 186264 0.847521 + . ID=CGI_10022595; scaffold1512 WUBlastX LINE_RTE-BovB 573772 573849 41 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_RTE-BovB 573875 573985 28 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_RTE-BovB 5034 5153 20 + . . . . . -1 -1 -1 . . . scaffold186 WUBlastX LINE_RTE-X 223691 223876 49 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LINE_RTE-X 386874 386996 70 - . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_RTE-X 280204 280311 26 + . . scaffold556 GLEAN mRNA 272202 380485 0.387115 - . ID=CGI_10016806; scaffold1411 WUBlastX LINE_RTE-X 79872 80375 38 + . . scaffold1411 GLEAN mRNA 68337 88337 0.750194 - . ID=CGI_10009186; scaffold1232 WUBlastX LINE_RTE-X 207962 208183 69 + . . . . . -1 -1 -1 . . . scaffold39696 WUBlastX DNA_Harbinger 56512 56622 34 + . . scaffold39696 GLEAN mRNA 41717 59740 0.990766 + . ID=CGI_10003524; scaffold1599 WUBlastX DNA_Sola 208582 208692 67 + . . scaffold1599 GLEAN mRNA 204689 219809 0.999676 - . ID=CGI_10027141; scaffold38978 WUBlastX DNA_Sola 27702 27809 79 - . . . . . -1 -1 -1 . . . scaffold35152 WUBlastX DNA_Sola 18010 18117 86 + . . . . . -1 -1 -1 . . . C33658 WUBlastX DNA_Sola 11145 11531 58 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; scaffold20 WUBlastX DNA_TcMar-Marin 339272 339319 25 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Marin 1600109 1600189 22 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold38774 WUBlastX DNA_Sola 8599 8757 55 + . . . . . -1 -1 -1 . . . scaffold1558 WUBlastX LINE_L1-Tx1 38105 38251 49 - . . scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold1213 WUBlastX LINE_L1-Tx1 419237 419452 83 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; C30006 WUBlastX LINE_L1-Tx1 3896 4027 36 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L1-Tx1 913545 913823 31 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_TcMar-Tc1 116844 116948 44 + . . scaffold535 GLEAN mRNA 111373 154699 0.592399 + . ID=CGI_10020283; scaffold1627 WUBlastX DNA_TcMar-Tc1 208057 208266 48 + . . scaffold1627 GLEAN mRNA 173064 218682 0.503235 - . ID=CGI_10009567; C28512 WUBlastX DNA_IS4EU 4680 4826 22 + . . . . . -1 -1 -1 . . . C28512 WUBlastX DNA_IS4EU 5448 5612 33 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX LTR_Ngaro 51358 51564 75 - . . . . . -1 -1 -1 . . . scaffold1230 WUBlastX DNA_TcMar-Tc1 93952 94137 33 + . . . . . -1 -1 -1 . . . scaffold39274 WUBlastX LINE_Penelope 21607 21813 74 - . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_L1 173027 173872 27 - . . . . . -1 -1 -1 . . . scaffold34420 WUBlastX LINE_L1 1343 2074 42 + . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_L1 156022 156438 53 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_Penelope 370598 370957 52 - . . . . . -1 -1 -1 . . . scaffold37532 WUBlastX DNA_PiggyBac 13418 13627 79 + . . . . . -1 -1 -1 . . . scaffold42836 WUBlastX LINE_CR1 168758 168832 21 + . . scaffold42836 GLEAN mRNA 143632 181424 1 + . ID=CGI_10007862; scaffold43662 WUBlastX DNA_IS4EU 31592 31795 81 + . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX DNA_Harbinger 245694 245855 63 + . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LTR_Gypsy 43116 43628 67 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold332 WUBlastX LINE_L1 623179 623382 61 + . . . . . -1 -1 -1 . . . scaffold35640 WUBlastX LINE_Penelope 11023 11184 83 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_Penelope 252524 252682 62 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_Penelope 253027 253101 21 + . . . . . -1 -1 -1 . . . scaffold41466 WUBlastX DNA_TcMar-Fot1 37436 37540 26 - . . . . . -1 -1 -1 . . . C29542 WUBlastX DNA_TcMar-Marin 801 857 26 - . . . . . -1 -1 -1 . . . C29542 WUBlastX DNA_TcMar-Marin 960 1316 42 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX LINE_L1-Tx1 194094 194363 84 - . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_L1-Tx1 12378 12821 60 + . . . . . -1 -1 -1 . . . scaffold881 WUBlastX DNA_TcMar-ISRm1 1182 1502 109 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LTR_Copia 135283 135375 29 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LINE_CR1-L2 114330 114722 30 - . . scaffold42392 GLEAN mRNA 99459 124879 0.476918 + . ID=CGI_10006785; scaffold664 WUBlastX DNA_Crypton 417773 417940 31 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LTR_Gypsy 276165 276455 80 - . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_CR1 147688 147741 20 + . . . . . -1 -1 -1 . . . C31482 WUBlastX LINE_L1-Tx1 2849 3109 27 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Pao 129829 129960 115 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LTR_Gypsy 280600 280662 23 + . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold101 WUBlastX LINE_L1 671115 671198 25 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_L1 217320 217403 25 - . . scaffold698 GLEAN mRNA 215942 226142 0.793097 + . ID=CGI_10020736; scaffold1436 WUBlastX LINE_L1-Tx1 32125 32577 63 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 154248 154445 26 - . . scaffold621 GLEAN mRNA 154047 155567 0.573337 - . ID=CGI_10017674; scaffold621 WUBlastX LTR_Gypsy 154248 154445 26 - . . scaffold621 GLEAN mRNA 127381 238205 0.796035 + . ID=CGI_10017672; scaffold41884 WUBlastX LTR_Gypsy 127938 128135 26 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_Harbinger 923943 924086 72 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_Harbinger 924717 924893 20 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Ngaro 331994 332245 98 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LTR_Ngaro 332310 332372 21 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_TcMar-Marin 1136630 1136812 40 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX DNA_Maverick 67684 67845 77 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_RTE-X 24475 24603 49 + . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_RTE-X 147617 148150 75 - . . . . . -1 -1 -1 . . . scaffold1578 WUBlastX LTR_Pao 67258 67575 114 + . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold34222 WUBlastX LINE_CR1-L2 13047 13361 84 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_CR1-L2 412321 412743 99 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 561733 562332 120 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_IS4EU 188723 189067 31 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX DNA_MuDR 514554 515849 50 - . . . . . -1 -1 -1 . . . scaffold40560 WUBlastX LINE_L1 35416 35562 47 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 180145 180336 36 - . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LINE_RTE-BovB 140221 140295 34 + . . . . . -1 -1 -1 . . . scaffold120 WUBlastX LINE_RTE-X 454513 454755 102 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_IS4EU 67498 67647 56 + . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_IS4EU 68608 68832 66 + . . . . . -1 -1 -1 . . . scaffold574 WUBlastX DNA_TcMar-Fot1 56157 56441 133 + . . . . . -1 -1 -1 . . . scaffold43608 WUBlastX LINE_RTE-X 230856 230963 37 - . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_L2 244985 245110 20 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc1 733058 733138 59 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_Penelope 369904 370308 56 - . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_L1-Tx1 175070 175471 126 - . . scaffold421 GLEAN mRNA 170277 178992 0.999676 + . ID=CGI_10012155; scaffold43538 WUBlastX DNA_En-Spm 178665 179978 911 + . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L2 191434 191634 64 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L2 191739 192314 366 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L2 192356 192886 389 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_L2 192865 192990 80 - . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy 66854 67369 85 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold1329 WUBlastX LINE_L2 197512 197904 23 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX DNA_hAT-Tip100 99613 100101 70 + . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_Penelope 398352 398660 140 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 398571 399134 80 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX LTR_Foamy 117116 117163 21 + . . . . . -1 -1 -1 . . . scaffold141 WUBlastX LTR_Gypsy 150721 152541 659 + . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX DNA_Maverick 132461 132586 51 - . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LINE_CR1-L2 359047 359349 129 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX DNA_IS4EU 116831 117058 58 - . . . . . -1 -1 -1 . . . scaffold39240 WUBlastX LTR_Gypsy 47738 48268 89 + . . . . . -1 -1 -1 . . . scaffold39500 WUBlastX LTR_Gypsy 19553 20287 174 - . . . . . -1 -1 -1 . . . scaffold173 WUBlastX LINE_L2 121810 122478 135 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L2 335642 336415 144 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LTR_Pao 163676 164044 92 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LTR_Gypsy 741884 742267 176 - . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 130615 131130 99 - . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LINE_Penelope 343427 343792 143 - . . scaffold361 GLEAN mRNA 333222 389747 0.874383 - . ID=CGI_10020861; scaffold374 WUBlastX LINE_Penelope 199206 199880 61 - . . . . . -1 -1 -1 . . . scaffold35928 WUBlastX LTR_Ngaro 19792 20046 139 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_L1 523362 523739 146 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_RTE-X 805028 805399 89 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_RTE-BovB 22192 23181 84 + . . . . . -1 -1 -1 . . . scaffold1355 WUBlastX LINE_RTE-X 3807 4433 83 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 513626 513829 64 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX DNA_Sola 170717 171217 184 + . . . . . -1 -1 -1 . . . scaffold743 WUBlastX LINE_L1-Tx1 112001 112348 150 - . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LTR_Gypsy 199884 200069 75 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Gypsy-Cigr 27794 30697 1245 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Ngaro 451289 451393 45 - . . . . . -1 -1 -1 . . . scaffold373 WUBlastX LTR_Gypsy 10 78 36 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LTR_Gypsy 303495 303617 32 + . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX DNA_Harbinger 142744 143298 91 + . . . . . -1 -1 -1 . . . scaffold1500 WUBlastX DNA_Harbinger 143532 143660 29 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_L1 87502 87564 27 + . . . . . -1 -1 -1 . . . scaffold1424 WUBlastX LINE_L1-Tx1 71552 71905 228 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 238783 239823 717 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 239733 240182 378 - . . . . . -1 -1 -1 . . . C22494 WUBlastX LTR_Pao 3 941 88 - . . . . . -1 -1 -1 . . . scaffold1041 WUBlastX LTR_Gypsy 30138 30239 43 - . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX LINE_L2 17689 17967 40 - . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_L1-Tx1 15229 15711 119 + . . scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold973 WUBlastX LTR_Gypsy-Cigr 342090 343280 855 - . . . . . -1 -1 -1 . . . C24604 WUBlastX DNA_MuDR 23 400 81 - . . . . . -1 -1 -1 . . . C24604 WUBlastX DNA_MuDR 792 989 42 - . . C24604 GLEAN mRNA 771 2674 0.997918 - . ID=CGI_10000200; scaffold681 WUBlastX LTR_Ngaro 389413 389568 43 - . . . . . -1 -1 -1 . . . scaffold975 WUBlastX LTR_Ngaro 252107 252598 216 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_RTE-X 334408 334446 22 - . . scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold1638 WUBlastX LINE_RTE-X 44815 44928 50 - . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LINE_RTE-X 44940 45473 142 - . . . . . -1 -1 -1 . . . scaffold190 WUBlastX LINE_L1-Tx1 32156 32335 34 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Pao 685539 687683 979 + . . . . . -1 -1 -1 . . . scaffold35466 WUBlastX LINE_L1 14536 15399 173 + . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX DNA_Sola 13579 13992 128 + . . . . . -1 -1 -1 . . . scaffold40150 WUBlastX LINE_CR1 71525 71848 147 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_Harbinger 255093 255317 166 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LTR_Ngaro 123280 123606 113 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LTR_Ngaro 123609 123815 123 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 472720 472779 22 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_RTE-X 376739 377071 153 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX LINE_RTE-BovB 22913 23425 248 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy 677263 678168 689 - . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold419 WUBlastX LTR_Gypsy 691400 691720 105 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 693122 693466 155 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 694553 694663 34 + . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 285956 286162 145 + . . scaffold440 GLEAN mRNA 284962 311438 0.999351 + . ID=CGI_10014144; scaffold440 WUBlastX LTR_Gypsy 286171 286473 114 + . . scaffold440 GLEAN mRNA 284962 311438 0.999351 + . ID=CGI_10014144; scaffold784 WUBlastX LTR_Gypsy 311096 311659 138 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX DNA_Crypton 535096 535290 81 + . . . . . -1 -1 -1 . . . scaffold489 WUBlastX DNA_Crypton 535482 535856 159 + . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LINE_L1-Tx1 614170 614877 201 + . . . . . -1 -1 -1 . . . scaffold42112 WUBlastX LTR_Gypsy 64101 64493 93 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_Gypsy 410069 410146 34 + . . . . . -1 -1 -1 . . . scaffold1595 WUBlastX LINE_L2 10209 10745 197 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX DNA_IS4EU 153505 153831 159 - . . . . . -1 -1 -1 . . . scaffold37472 WUBlastX LINE_L1-Tx1 32051 32419 41 + . . . . . -1 -1 -1 . . . scaffold698 WUBlastX LINE_CR1 175657 175794 95 - . . . . . -1 -1 -1 . . . scaffold1431 WUBlastX DNA_Sola 78532 79359 187 - . . scaffold1431 GLEAN mRNA 78529 80232 0.836016 - . ID=CGI_10004391; scaffold1431 WUBlastX DNA_Sola 79483 80364 35 - . . scaffold1431 GLEAN mRNA 78529 80232 0.836016 - . ID=CGI_10004391; scaffold1561 WUBlastX LINE_CR1 40973 41545 248 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX DNA_hAT-hATw 337223 337987 203 - . . . . . -1 -1 -1 . . . scaffold534 WUBlastX LTR_Gypsy-Cigr 47203 47394 215 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 245309 245524 42 - . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_Penelope 140350 140661 90 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Maverick 400024 400869 124 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 223108 224070 249 - . . . . . -1 -1 -1 . . . scaffold1232 WUBlastX LTR_Pao 317137 317325 98 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LTR_Ngaro 48541 48750 46 + . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LTR_Ngaro 49519 49716 97 + . . . . . -1 -1 -1 . . . scaffold35860 WUBlastX LINE_RTE-X 19639 20325 104 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX LINE_RTE-X 42312 42386 22 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX LTR_Ngaro 569272 569886 229 - . . . . . -1 -1 -1 . . . scaffold1609 WUBlastX LTR_Gypsy 158513 159157 515 + . . scaffold1609 GLEAN mRNA 144417 163840 0.83514 - . ID=CGI_10010602; scaffold1609 WUBlastX LTR_Gypsy 159151 160602 1370 + . . scaffold1609 GLEAN mRNA 144417 163840 0.83514 - . ID=CGI_10010602; scaffold1609 WUBlastX LTR_Gypsy 160942 161712 425 + . . scaffold1609 GLEAN mRNA 144417 163840 0.83514 - . ID=CGI_10010602; scaffold1009 WUBlastX LTR_Gypsy 546500 546604 58 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 547447 547692 70 - . . . . . -1 -1 -1 . . . scaffold1144 WUBlastX LTR_Gypsy-Cigr 173237 173743 161 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LTR_Ngaro 113848 114618 239 - . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX LTR_Pao 333780 333998 35 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold659 WUBlastX DNA_Maverick 84508 84996 300 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_En-Spm 52618 53469 295 - . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold370 WUBlastX DNA_hAT-hATw 843776 844513 60 + . . scaffold370 GLEAN mRNA 838405 846799 0.855201 + . ID=CGI_10025566; scaffold443 WUBlastX LTR_Gypsy 117820 117945 20 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Gypsy 119254 120060 343 + . . scaffold1350 GLEAN mRNA 116715 124816 0.68864 + . ID=CGI_10017298; scaffold1350 WUBlastX LTR_Gypsy 119254 120060 343 + . . scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold1213 WUBlastX LTR_Gypsy 1237751 1237873 20 + . . . . . -1 -1 -1 . . . scaffold1878 WUBlastX LTR_Gypsy 30681 30740 35 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 388586 388774 30 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Pao 389396 389629 31 - . . . . . -1 -1 -1 . . . scaffold40938 WUBlastX LINE_L1-Tx1 5084 5452 73 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1-Tx1 196251 196508 48 + . . . . . -1 -1 -1 . . . scaffold38532 WUBlastX LTR_DIRS? 10992 11615 294 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_TcMar-Tc1 210950 211519 110 + . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-X 422386 423345 132 + . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX DNA_Sola 183992 185536 274 - . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold152 WUBlastX LTR_Pao 262945 263109 60 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-BovB 174610 174951 90 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-BovB 175326 176204 129 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-BovB 176164 176247 57 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-BovB 176464 176658 92 + . . . . . -1 -1 -1 . . . scaffold38438 WUBlastX LTR_Pao 7173 7694 151 - . . . . . -1 -1 -1 . . . scaffold38438 WUBlastX LTR_Pao 7628 8569 243 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Pao 793159 793914 261 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_L1-Tx1 505157 506875 183 - . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LTR_Gypsy 85854 86132 36 + . . . . . -1 -1 -1 . . . scaffold41588 WUBlastX LINE_L1-Tx1 103992 104216 88 + . . . . . -1 -1 -1 . . . scaffold1894 WUBlastX LTR_Gypsy 209250 209426 82 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LTR_Gypsy 505156 505524 32 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1 86134 86421 46 - . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Pao 184282 184443 42 + . . . . . -1 -1 -1 . . . scaffold38626 WUBlastX LINE_L2 45882 46214 132 + . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Gypsy 2845 3402 488 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LTR_Gypsy 3452 3931 184 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LTR_Gypsy 108824 108919 21 + . . . . . -1 -1 -1 . . . scaffold790 WUBlastX LTR_Gypsy 122322 123425 64 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 566566 567321 633 - . . . . . -1 -1 -1 . . . scaffold660 WUBlastX LINE_RTE-BovB 155951 156259 240 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold660 WUBlastX LINE_RTE-BovB 156259 156339 58 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold660 WUBlastX LINE_RTE-BovB 156315 156758 418 + . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold728 WUBlastX LTR_Ngaro 425057 426373 586 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_DIRS 461429 462037 338 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_DIRS 462436 462750 289 - . . . . . -1 -1 -1 . . . scaffold43442 WUBlastX DNA_TcMar-Fot1 161161 162429 462 + . . . . . -1 -1 -1 . . . C26550 WUBlastX LTR_Ngaro 2688 3740 756 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX DNA_IS4EU 526218 527750 730 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 802936 803076 28 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_L2 204724 204933 54 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold43742 WUBlastX LINE_CR1 58136 58180 36 - . . . . . -1 -1 -1 . . . scaffold35486 WUBlastX LINE_CR1-L2 16281 16514 37 - . . scaffold35486 GLEAN mRNA 8513 17205 0.999998 - . ID=CGI_10001528; scaffold42836 WUBlastX LINE_CR1-L2 95930 96073 34 - . . . . . -1 -1 -1 . . . scaffold771 WUBlastX LINE_L2 317736 317969 61 + . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Pao 649205 649339 50 + . . . . . -1 -1 -1 . . . scaffold711 WUBlastX DNA_hAT-Ac 177198 177581 33 - . . . . . -1 -1 -1 . . . scaffold711 WUBlastX DNA_hAT-Ac 178280 178663 33 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LTR_Copia 86821 86871 21 + . . scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold490 WUBlastX LTR_Pao 115371 115556 33 - . . scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold576 WUBlastX LTR_Pao 446948 447073 20 - . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Pao 27989 28141 32 + . . . . . -1 -1 -1 . . . scaffold563 WUBlastX DNA_TcMar-Marin 7175 7318 46 + . . . . . -1 -1 -1 . . . C34402 WUBlastX LTR_Copia 17749 17907 25 + . . . . . -1 -1 -1 . . . scaffold42528 WUBlastX LTR_Copia 144410 144526 49 + . . scaffold42528 GLEAN mRNA 136401 146936 0.889923 + . ID=CGI_10007210; scaffold86 WUBlastX DNA_Chapaev-Cha 523534 524256 42 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_L2 120349 120597 52 - . . . . . -1 -1 -1 . . . scaffold509 WUBlastX LINE_L2 393700 393960 33 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_Jockey 54563 54910 25 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold209 WUBlastX LTR_Ngaro 206525 206650 51 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_L2 389146 389454 22 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_DIRS 263096 263284 52 + . . . . . -1 -1 -1 . . . scaffold35986 WUBlastX LTR_DIRS 14598 15137 24 - . . scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold807 WUBlastX LTR_Gypsy 65592 66044 63 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LTR_Gypsy 634317 634637 40 + . . scaffold77 GLEAN mRNA 634413 634898 0.481188 + . ID=CGI_10027986; scaffold852 WUBlastX LTR_Gypsy 63043 63219 20 - . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LTR_Gypsy 293557 293745 24 - . . scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold1307 WUBlastX LTR_Gypsy 240729 240836 73 + . . . . . -1 -1 -1 . . . scaffold38364 WUBlastX LINE_Jockey 52728 52853 24 + . . . . . -1 -1 -1 . . . scaffold32064 WUBlastX DNA_IS4EU 7074 7253 43 - . . . . . -1 -1 -1 . . . scaffold1811 WUBlastX DNA_IS4EU 64196 64495 29 + . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_I 389110 390012 23 - . . scaffold557 GLEAN mRNA 389014 397940 0.685724 - . ID=CGI_10017978; scaffold1785 WUBlastX DNA_hAT-Ac 927475 927816 75 - . . scaffold1785 GLEAN mRNA 909020 927662 0.54223 - . ID=CGI_10024406; scaffold492 WUBlastX DNA_Harbinger 82713 82928 32 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX DNA_Harbinger 51564 51788 53 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX DNA_Harbinger 153586 153807 56 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX DNA_Harbinger 162589 162723 47 + . . . . . -1 -1 -1 . . . scaffold1462 WUBlastX DNA_Harbinger 359533 359664 32 - . . scaffold1462 GLEAN mRNA 348326 383431 0.995853 + . ID=CGI_10014386; scaffold445 WUBlastX LINE_R2-Hero 324240 324512 67 + . . scaffold445 GLEAN mRNA 299978 341164 0.811094 - . ID=CGI_10019444; scaffold40088 WUBlastX LTR_Gypsy 32446 32697 80 - . . . . . -1 -1 -1 . . . scaffold1094 WUBlastX LTR_Gypsy 597695 598024 43 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LTR_Gypsy 380508 381383 42 - . . scaffold101 GLEAN mRNA 372430 382001 0.551916 - . ID=CGI_10021649; scaffold1711 WUBlastX LTR_Gypsy 338649 339170 70 + . . scaffold1711 GLEAN mRNA 339141 339371 0.69447 + . ID=CGI_10015611; scaffold1402 WUBlastX LTR_Gypsy 428801 428980 55 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX DNA_Harbinger 48961 49074 64 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_Harbinger 68955 69140 37 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Harbinger 522991 523119 64 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX DNA_Harbinger 1682314 1682577 40 - . . . . . -1 -1 -1 . . . C30176 WUBlastX DNA_Harbinger 3973 4140 69 + . . . . . -1 -1 -1 . . . scaffold37672 WUBlastX LINE_L1-Tx1 15419 15595 21 + . . . . . -1 -1 -1 . . . scaffold39050 WUBlastX LINE_L1-Tx1 51549 51923 36 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-BovB 72107 72478 43 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Kolobok 402225 402530 68 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX DNA_Kolobok 128587 128709 58 + . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_TcMar-Marin 392063 392317 35 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold1352 WUBlastX DNA_TcMar-Marin 444180 444239 26 + . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LTR_Ngaro 464238 464426 23 + . . scaffold586 GLEAN mRNA 448256 475873 0.905445 - . ID=CGI_10018008; scaffold586 WUBlastX LTR_Ngaro 464435 464527 22 + . . scaffold586 GLEAN mRNA 448256 475873 0.905445 - . ID=CGI_10018008; scaffold586 WUBlastX LTR_Ngaro 464733 464888 33 + . . scaffold586 GLEAN mRNA 448256 475873 0.905445 - . ID=CGI_10018008; scaffold323 WUBlastX LINE_L2 131009 131038 22 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_ERV1 357480 357821 56 - . . . . . -1 -1 -1 . . . scaffold43108 WUBlastX LTR_Copia 157958 158122 33 - . . . . . -1 -1 -1 . . . scaffold305 WUBlastX DNA_NOF 443253 443354 23 + . . scaffold305 GLEAN mRNA 436325 448362 0.78661 - . ID=CGI_10019140; scaffold728 WUBlastX DNA_NOF 420878 420979 23 - . . . . . -1 -1 -1 . . . scaffold888 WUBlastX DNA_MuDR 335687 335989 48 - . . scaffold888 GLEAN mRNA 335636 340311 0.376374 - . ID=CGI_10013460; scaffold128 WUBlastX LINE_Penelope 96760 96885 81 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold1283 WUBlastX DNA_TcMar-Marin 296603 297046 44 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_Penelope 365212 365346 62 - . . . . . -1 -1 -1 . . . scaffold49 WUBlastX LINE_Penelope 75371 75724 26 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_Penelope 20858 21067 56 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LINE_Penelope 167252 167401 60 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_Penelope 129611 129712 24 - . . scaffold354 GLEAN mRNA 123850 132843 0.496488 + . ID=CGI_10025699; scaffold487 WUBlastX DNA_P 447013 447177 26 - . . scaffold487 GLEAN mRNA 439996 447135 0.39713 - . ID=CGI_10017054; scaffold487 WUBlastX DNA_P 447291 447482 39 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX DNA_P 480774 480989 24 + . . scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold975 WUBlastX LINE_L1 244664 245032 62 - . . scaffold975 GLEAN mRNA 241213 250600 0.499805 - . ID=CGI_10013329; scaffold49 WUBlastX LINE_L1-Tx1 246655 246912 21 - . . scaffold49 GLEAN mRNA 244358 267681 0.992812 - . ID=CGI_10013285; scaffold38272 WUBlastX LINE_L1 52859 53044 58 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1 419303 419503 76 - . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold1157 WUBlastX LINE_L1 40160 40516 23 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_L1 1243546 1243776 78 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LINE_L1 60741 60878 41 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 532038 532664 29 + . . scaffold150 GLEAN mRNA 532020 532706 0.618008 + . ID=CGI_10028613; scaffold35238 WUBlastX LINE_L1 3027 3065 21 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Kolobok-Hyd 1353452 1353520 29 - . . scaffold86 GLEAN mRNA 1350663 1354624 0.5119 - . ID=CGI_10028203; scaffold1736 WUBlastX LINE_RTE-BovB 534390 534509 25 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LINE_RTE-X 199052 199201 54 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_RTE-BovB 82402 82542 57 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_PiggyBac 63160 63378 45 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_PiggyBac 378278 378508 46 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Maverick 97131 97394 65 + . . scaffold1024 GLEAN mRNA 87362 100892 0.557329 - . ID=CGI_10028520; scaffold905 WUBlastX LINE_R2 3747 3902 22 + . . scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold808 WUBlastX DNA_MuDR 277782 277982 28 - . . . . . -1 -1 -1 . . . scaffold40050 WUBlastX LINE_RTE-X 27602 27739 28 - . . . . . -1 -1 -1 . . . scaffold40164 WUBlastX LINE_RTE-X 59776 59970 44 - . . . . . -1 -1 -1 . . . scaffold696 WUBlastX LINE_RTE-X 8219 8902 31 + . . scaffold696 GLEAN mRNA 7653 15168 0.999968 + . ID=CGI_10003719; scaffold505 WUBlastX LINE_RTE-BovB 2442 2588 38 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-X 1100302 1100481 30 + . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_RTE-X 271069 271278 64 - . . . . . -1 -1 -1 . . . scaffold542 WUBlastX LINE_RTE-X 217382 217591 28 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_RTE-X 1065877 1066140 24 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_RTE-X 221585 221809 53 + . . scaffold1154 GLEAN mRNA 221230 227682 0.517509 - . ID=CGI_10026156; scaffold1329 WUBlastX LINE_RTE-X 43355 43474 33 - . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX LINE_RTE-X 307502 307684 56 - . . scaffold44054 GLEAN mRNA 306696 317315 0.999734 + . ID=CGI_10016171; scaffold43278 WUBlastX LINE_RTE-X 116776 117042 46 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 195201 195236 23 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_RTE-X 548738 548839 20 - . . . . . -1 -1 -1 . . . scaffold42930 WUBlastX LINE_RTE-X 139449 139493 26 - . . . . . -1 -1 -1 . . . scaffold338 WUBlastX LINE_RTE-X 226334 226462 65 - . . scaffold338 GLEAN mRNA 225763 251936 1 + . ID=CGI_10011188; scaffold257 WUBlastX DNA_TcMar-Marin 1600280 1600438 62 + . . scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold44006 WUBlastX DNA_TcMar-Tc1 255561 255959 68 + . . scaffold44006 GLEAN mRNA 250442 262690 0.99731 - . ID=CGI_10015581; scaffold393 WUBlastX DNA_TcMar-Tc1 760220 760618 68 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_TcMar-Tc1 229846 230040 54 - . . scaffold816 GLEAN mRNA 223398 238743 0.358147 + . ID=CGI_10015655; scaffold301 WUBlastX DNA_Sola 951223 951426 36 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold38510 WUBlastX DNA_Sola 30716 30910 26 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38498 WUBlastX LTR_Ngaro 20410 20568 79 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_L1-Tx1 134588 134716 39 + . . . . . -1 -1 -1 . . . scaffold374 WUBlastX LINE_L1-Tx1 55887 56090 56 + . . scaffold374 GLEAN mRNA 54604 61179 0.696664 + . ID=CGI_10018717; scaffold393 WUBlastX DNA_TcMar-Tc1 760226 760540 70 - . . . . . -1 -1 -1 . . . scaffold44006 WUBlastX DNA_TcMar-Tc1 255639 255953 70 + . . scaffold44006 GLEAN mRNA 250442 262690 0.99731 - . ID=CGI_10015581; scaffold146 WUBlastX LINE_L1-Tx1 553879 554007 59 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_DIRS 516372 517028 26 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX DNA_TcMar-Tc1 254372 254635 76 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX DNA_TcMar-Tc1 37998 38270 55 - . . . . . -1 -1 -1 . . . scaffold714 WUBlastX DNA_TcMar-Tc1 399006 399200 60 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold610 WUBlastX DNA_TcMar-Tc1 52823 53056 36 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L1-Tx1 354081 354332 51 + . . . . . -1 -1 -1 . . . scaffold644 WUBlastX LINE_L1-Tx1 84528 84821 28 - . . . . . -1 -1 -1 . . . scaffold31222 WUBlastX LINE_L1-Tx1 6000 6068 34 - . . . . . -1 -1 -1 . . . scaffold31222 WUBlastX LINE_L1-Tx1 6055 6180 42 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Merlin 434551 434721 78 - . . . . . -1 -1 -1 . . . C5537 WUBlastX LTR_Pao 7 123 97 + . . . . . -1 -1 -1 . . . scaffold205 WUBlastX LINE_L2 29754 29843 46 + . . . . . -1 -1 -1 . . . scaffold1577 WUBlastX LINE_CR1-L2 35774 35812 27 + . . . . . -1 -1 -1 . . . scaffold888 WUBlastX LINE_L2 97914 98315 59 - . . . . . -1 -1 -1 . . . scaffold270 WUBlastX LINE_L2 115010 115072 21 - . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LTR_Gypsy 38495 38755 84 + . . scaffold78 GLEAN mRNA 33688 45299 0.504298 + . ID=CGI_10006914; scaffold1009 WUBlastX LTR_Gypsy 463821 463913 38 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LTR_Gypsy 107569 107844 22 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_IS4EU 49105 49224 69 + . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_RTE-X 111747 111815 27 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_RTE-X 288426 288620 60 - . . . . . -1 -1 -1 . . . scaffold1354 WUBlastX LINE_R1 170130 170249 22 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold481 WUBlastX LINE_RTE-BovB 78495 79067 58 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Sola 170142 170354 33 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Sola 170522 170614 20 - . . . . . -1 -1 -1 . . . scaffold260 WUBlastX LINE_RTE-X 72664 72834 78 + . . . . . -1 -1 -1 . . . scaffold41772 WUBlastX LTR_Gypsy 99422 99757 22 + . . . . . -1 -1 -1 . . . scaffold1579 WUBlastX LINE_CR1 317939 318343 58 - . . scaffold1579 GLEAN mRNA 317346 318165 1 + . ID=CGI_10016868; scaffold613 WUBlastX LTR_Gypsy 11763 11990 86 + . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 65535 65870 85 + . . . . . -1 -1 -1 . . . scaffold42070 WUBlastX DNA_IS4EU 102864 103100 61 + . . . . . -1 -1 -1 . . . scaffold42070 WUBlastX DNA_IS4EU 103779 103856 29 + . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX DNA_Harbinger 394591 394860 77 + . . . . . -1 -1 -1 . . . scaffold1856 WUBlastX LTR_Gypsy 79085 79798 79 - . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LTR_Ngaro 83178 83441 56 + . . . . . -1 -1 -1 . . . scaffold42892 WUBlastX LINE_RTE-X 2322 2519 77 - . . . . . -1 -1 -1 . . . scaffold1456 WUBlastX LTR_Gypsy 118015 118140 55 + . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LTR_Gypsy 213926 214054 36 - . . . . . -1 -1 -1 . . . scaffold1210 WUBlastX DNA_hAT-Blackja 216656 216925 56 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_TcMar-Pogo 212362 212508 99 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-BovB 776076 776336 85 + . . . . . -1 -1 -1 . . . scaffold258 WUBlastX LINE_CR1-L2 589568 589987 97 - . . . . . -1 -1 -1 . . . scaffold41242 WUBlastX LTR_Pao 32017 32265 52 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Pao 515204 515695 112 + . . scaffold461 GLEAN mRNA 510838 522193 0.712865 + . ID=CGI_10020118; scaffold43552 WUBlastX LTR_Gypsy 163799 163918 23 + . . . . . -1 -1 -1 . . . scaffold1672 WUBlastX LTR_Gypsy 81219 81452 54 + . . scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold354 WUBlastX LTR_Ngaro 951078 951320 54 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_IS4EU 463607 463687 20 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX DNA_IS4EU 214660 214974 98 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold190 WUBlastX DNA_IS4EU 311765 311974 26 - . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX DNA_IS4EU 148482 148691 26 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 588276 588485 99 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 142594 142935 109 - . . scaffold626 GLEAN mRNA 111038 155634 0.745946 - . ID=CGI_10019981; scaffold351 WUBlastX LTR_Gypsy 235328 235789 31 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 747509 747796 83 - . . . . . -1 -1 -1 . . . scaffold122 WUBlastX DNA_Kolobok 253957 254043 52 + . . . . . -1 -1 -1 . . . scaffold525 WUBlastX LINE_L1 48564 49010 41 - . . . . . -1 -1 -1 . . . scaffold532 WUBlastX LINE_RTE-BovB 74249 74449 24 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_Maverick 383565 383651 34 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX DNA_Maverick 96728 97114 30 - . . . . . -1 -1 -1 . . . scaffold226 WUBlastX LINE_RTE-X 761658 761753 37 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_RTE-X 105076 105318 40 + . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 49548 49895 118 - . . . . . -1 -1 -1 . . . scaffold50 WUBlastX DNA_IS4EU 196012 196425 100 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX DNA_IS4EU 11153 11302 86 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LINE_Penelope 49679 49954 79 + . . . . . -1 -1 -1 . . . scaffold675 WUBlastX LINE_RTE-RTE 66819 67364 66 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_Proto2 358060 358494 95 - . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX LINE_CR1-L2 221378 221650 82 - . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LINE_CR1-L2 2095 2517 51 + . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_CR1-L2 538822 539052 30 - . . . . . -1 -1 -1 . . . C28310 WUBlastX LINE_CR1 1648 1980 45 - . . C28310 GLEAN mRNA 1906 2427 0.999064 - . ID=CGI_10000419; scaffold20 WUBlastX LTR_Ngaro 713145 713432 116 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_I 281113 281865 54 - . . . . . -1 -1 -1 . . . scaffold1353 WUBlastX LINE_L1 17885 18244 98 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LTR_Gypsy 511960 512376 102 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold35180 WUBlastX LINE_RTE-X 9682 10011 98 + . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold1255 WUBlastX DNA_TcMar-Tc1 431981 432301 41 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy-Cigr 500459 500917 132 - . . . . . -1 -1 -1 . . . scaffold82 WUBlastX DNA_IS4EU 635138 635332 69 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LINE_RTE-BovB 318141 318902 66 - . . scaffold794 GLEAN mRNA 308972 320828 0.696321 - . ID=CGI_10017155; scaffold36526 WUBlastX LINE_Penelope 2156 2374 72 - . . . . . -1 -1 -1 . . . scaffold37092 WUBlastX LINE_L1-Tx1 26419 26772 92 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 43768 43950 35 + . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_L2 110810 110902 20 + . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LINE_Proto2 31521 31739 64 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_CR1-L2 409477 409791 54 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Ngaro 11039 12028 51 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_IS4EU 9789 10331 138 - . . . . . -1 -1 -1 . . . scaffold41648 WUBlastX DNA_IS4EU 116605 116838 150 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LINE_Penelope 108113 108412 125 - . . . . . -1 -1 -1 . . . scaffold38364 WUBlastX LINE_L1-Tx1 53092 54981 793 + . . . . . -1 -1 -1 . . . scaffold1357 WUBlastX LTR_Gypsy 3978 4892 50 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 104121 105017 37 + . . . . . -1 -1 -1 . . . scaffold172 WUBlastX LTR_Gypsy 16016 16297 73 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold1267 WUBlastX DNA_IS4EU 391072 391191 29 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_IS4EU 391530 391652 48 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_IS4EU 391812 391982 76 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Gypsy 135613 135702 58 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-X 594228 594896 86 - . . scaffold721 GLEAN mRNA 582991 607417 0.998859 - . ID=CGI_10022014; scaffold237 WUBlastX LTR_Pao 332420 332497 38 - . . . . . -1 -1 -1 . . . scaffold385 WUBlastX DNA_TcMar-Tc1 276059 276652 44 + . . scaffold385 GLEAN mRNA 273365 289522 0.998167 - . ID=CGI_10011601; scaffold169 WUBlastX LINE_RTE-X 16319 16555 81 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 597457 597885 324 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 598412 598840 231 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Ngaro 581848 583509 1117 - . . . . . -1 -1 -1 . . . scaffold1719 WUBlastX LTR_Pao 320245 320676 63 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 241636 242193 138 - . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX DNA_TcMar-Fot1 141272 141502 63 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_RTE-X 7561 7905 162 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX DNA_TcMar-Tc1 53210 53890 50 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 1138262 1138408 68 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold593 WUBlastX LINE_RTE-X 726163 727323 47 - . . scaffold593 GLEAN mRNA 725148 726467 0.937779 - . ID=CGI_10022539; scaffold1476 WUBlastX LINE_CR1-L2 171503 171628 62 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1054 WUBlastX LTR_Ngaro 48142 49104 137 - . . . . . -1 -1 -1 . . . scaffold1821 WUBlastX LINE_L2 183886 184263 127 + . . scaffold1821 GLEAN mRNA 178597 184043 0.990901 - . ID=CGI_10011292; scaffold1821 WUBlastX LINE_L2 184316 184420 38 + . . . . . -1 -1 -1 . . . scaffold634 WUBlastX LTR_Pao 5756 6193 43 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LTR_Pao 424546 424884 35 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_R2-Hero 269819 270187 203 + . . scaffold689 GLEAN mRNA 268555 270351 0.998685 - . ID=CGI_10014829; scaffold544 WUBlastX DNA_TcMar-Pogo 739066 739296 156 + . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold150 WUBlastX DNA_Kolobok 98929 99210 78 + . . . . . -1 -1 -1 . . . scaffold104 WUBlastX LTR_Pao 3178 3921 348 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 746024 746878 118 - . . . . . -1 -1 -1 . . . scaffold917 WUBlastX DNA_Harbinger 154430 154546 41 + . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold275 WUBlastX LINE_RTE-X 115555 115671 67 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_RTE-X 676356 676523 83 + . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LINE_L1-Tx1 92217 92573 192 + . . . . . -1 -1 -1 . . . scaffold1108 WUBlastX LTR_Gypsy-Cigr 562600 563301 530 - . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LTR_Gypsy 40479 42041 257 + . . scaffold1241 GLEAN mRNA 33172 55862 0.858231 - . ID=CGI_10016418; scaffold1179 WUBlastX DNA_Harbinger 18300 18506 129 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1880 WUBlastX LTR_Gypsy 98131 98382 140 + . . . . . -1 -1 -1 . . . scaffold1880 WUBlastX LTR_Gypsy 98477 98686 62 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX LTR_Ngaro 154538 155107 198 - . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX DNA_Merlin 336481 336738 38 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX DNA_TcMar-Tc1 79303 79899 173 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1-Tx1 127784 128059 97 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1-Tx1 128968 129207 60 + . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LTR_Pao 309913 310449 247 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold1738 WUBlastX LTR_Gypsy 5936 6052 21 + . . . . . -1 -1 -1 . . . scaffold1833 WUBlastX DNA_Academ 174720 175958 160 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_DIRS 279105 280775 184 + . . scaffold583 GLEAN mRNA 279966 280898 0.998382 + . ID=CGI_10023617; scaffold1403 WUBlastX LTR_DIRS 612331 614001 184 - . . scaffold1403 GLEAN mRNA 612208 612819 0.999999 - . ID=CGI_10020188; scaffold76 WUBlastX LTR_Gypsy 28861 29112 160 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 708651 709922 969 + . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_Penelope 325228 325740 194 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX LINE_L1-Tx1 96402 96560 47 - . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 169737 169952 26 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold383 WUBlastX LTR_Ngaro 466372 466497 46 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_hAT-hATw 544439 544705 21 - . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_hAT-hATw 544630 545235 221 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Gypsy 282950 284554 769 + . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Gypsy 285098 286999 1207 + . . . . . -1 -1 -1 . . . scaffold747 WUBlastX DNA_TcMar-Marin 184643 185095 123 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Gypsy 8771 9643 261 + . . . . . -1 -1 -1 . . . scaffold1603 WUBlastX LTR_Pao 334564 334644 21 - . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold41588 WUBlastX LINE_L1-Tx1 102732 102788 29 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_Kolobok-IS4 182288 182917 170 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_RTE-X 4540 4866 117 + . . . . . -1 -1 -1 . . . C25392 WUBlastX DNA_Sola 787 894 49 - . . . . . -1 -1 -1 . . . scaffold1400 WUBlastX LINE_RTE-X 3569 3838 79 + . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_Rex-Babar 47610 47900 61 + . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LTR_Gypsy 24684 24992 57 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; C15648 WUBlastX LTR_Gypsy 1 315 341 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LTR_DIRS 853124 853321 84 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 14647 14832 71 + . . . . . -1 -1 -1 . . . scaffold71 WUBlastX LINE_RTE-X 193090 193449 113 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LINE_CR1-L2 570659 570967 145 + . . scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold1131 WUBlastX DNA_Harbinger 118389 118568 76 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Harbinger 120032 120337 168 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Gypsy 96808 97473 381 - . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX DNA_Kolobok-IS4 466100 466954 342 + . . . . . -1 -1 -1 . . . scaffold1736 WUBlastX DNA_IS4EU 640227 640970 335 + . . . . . -1 -1 -1 . . . scaffold835 WUBlastX DNA_MuDR 455904 457208 302 - . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX DNA_Maverick 22900 23517 325 - . . . . . -1 -1 -1 . . . scaffold43150 WUBlastX DNA_Sola 54905 55015 55 - . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX DNA_Academ 42089 42736 206 - . . . . . -1 -1 -1 . . . scaffold42236 WUBlastX DNA_hAT 129454 129585 56 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 129699 129764 23 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 129980 130369 289 + . . scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold39640 WUBlastX LINE_L1-Tx1 21272 21334 21 + . . . . . -1 -1 -1 . . . scaffold1728 WUBlastX LINE_L2 27577 28218 331 + . . . . . -1 -1 -1 . . . scaffold1728 WUBlastX LINE_L2 28666 28881 52 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L1-Tx1 590083 590445 48 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_CR1-L2 650234 650653 124 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_DIRS 582669 583709 110 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_CR1-L2 736004 736555 173 + . . scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold37290 WUBlastX LTR_Ngaro 3021 3476 245 - . . . . . -1 -1 -1 . . . scaffold37290 WUBlastX LTR_Ngaro 3403 3858 172 - . . . . . -1 -1 -1 . . . scaffold34282 WUBlastX LINE_RTE-X 8005 8271 130 - . . scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold298 WUBlastX LTR_Gypsy 313375 313431 20 + . . . . . -1 -1 -1 . . . scaffold582 WUBlastX LTR_Gypsy 40427 41050 254 - . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LTR_Gypsy 63962 64027 20 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold371 WUBlastX LINE_RTE-X 37758 37946 33 + . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_L1-Tx1 50374 50583 39 - . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; C26344 WUBlastX LINE_Penelope 1252 2121 458 + . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_Penelope 356777 356950 76 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LINE_Penelope 357516 357785 118 - . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX LTR_Gypsy 151486 152058 173 + . . . . . -1 -1 -1 . . . scaffold1156 WUBlastX LINE_L1-Tx1 13971 14567 89 - . . . . . -1 -1 -1 . . . scaffold1156 WUBlastX LINE_L1-Tx1 14546 15832 251 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_RTE-X 18575 19537 115 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold271 WUBlastX LINE_L2 475704 476147 70 + . . scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold210 WUBlastX LINE_RTE-X 213765 215024 434 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LINE_L1-Tx1 61241 61456 28 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX DNA_hAT 229822 231213 454 + . . scaffold1750 GLEAN mRNA 229777 232957 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 229822 231213 454 + . . scaffold1750 GLEAN mRNA 227209 235623 0.823116 - . ID=CGI_10021475; scaffold1750 WUBlastX DNA_hAT 232273 232422 68 + . . scaffold1750 GLEAN mRNA 229777 232957 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 232273 232422 68 + . . scaffold1750 GLEAN mRNA 227209 235623 0.823116 - . ID=CGI_10021475; scaffold541 WUBlastX LINE_RTE-BovB 70007 70624 171 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX LINE_RTE-X 55629 55859 64 + . . scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold42896 WUBlastX LINE_RTE-X 132893 133897 469 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L1-Tx1 404266 404445 92 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 12423 12719 54 - . . . . . -1 -1 -1 . . . C34406 WUBlastX LTR_Pao 12750 12956 82 - . . . . . -1 -1 -1 . . . scaffold37002 WUBlastX LINE_CR1 8349 8624 160 + . . . . . -1 -1 -1 . . . scaffold386 WUBlastX LTR_Gypsy 45701 45991 30 + . . . . . -1 -1 -1 . . . scaffold37722 WUBlastX LINE_L2 44006 45199 429 + . . . . . -1 -1 -1 . . . scaffold483 WUBlastX LTR_Gypsy-Cigr 1286 2053 240 - . . . . . -1 -1 -1 . . . scaffold483 WUBlastX LTR_Gypsy-Cigr 2053 3765 359 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX LTR_Gypsy 39629 39958 294 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy-Cigr 962012 962122 51 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy-Cigr 962419 962802 30 - . . . . . -1 -1 -1 . . . C27700 WUBlastX LTR_Gypsy 9 1907 710 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_Ngaro 422522 423994 629 + . . scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold1357 WUBlastX LTR_Gypsy 3948 4526 56 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_L2 520646 521950 806 + . . scaffold847 GLEAN mRNA 512783 523785 0.999676 + . ID=CGI_10022281; scaffold1189 WUBlastX LINE_CR1 577183 577689 23 - . . scaffold1189 GLEAN mRNA 568608 577407 0.997699 + . ID=CGI_10023823; scaffold489 WUBlastX LINE_L2 481221 481454 20 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_CR1-L2 364532 364639 20 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_CR1-L2 365827 366063 34 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L2 614289 614351 21 + . . . . . -1 -1 -1 . . . scaffold43708 WUBlastX LINE_CR1-L2 203336 203776 41 + . . . . . -1 -1 -1 . . . scaffold43258 WUBlastX LINE_L2 144430 144669 31 - . . scaffold43258 GLEAN mRNA 134740 154295 0.483992 + . ID=CGI_10009634; scaffold856 WUBlastX LINE_CR1-L2 686 868 36 + . . . . . -1 -1 -1 . . . scaffold44006 WUBlastX LINE_CR1 17209 17301 80 + . . scaffold44006 GLEAN mRNA 9065 23431 0.999343 - . ID=CGI_10015569; scaffold1605 WUBlastX LINE_L2 12437 12709 33 - . . scaffold1605 GLEAN mRNA 11402 13497 0.727003 - . ID=CGI_10023340; scaffold1221 WUBlastX LINE_CR1 37957 38121 25 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Chapaev 523495 523737 44 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_Penelope 114773 115012 52 - . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_Copia 89617 89760 22 - . . scaffold392 GLEAN mRNA 88876 89919 0.733296 - . ID=CGI_10024203; scaffold1817 WUBlastX LTR_Copia 28480 28845 45 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold801 WUBlastX DNA_hAT 87356 87670 73 + . . scaffold801 GLEAN mRNA 80933 88043 0.889853 + . ID=CGI_10024063; scaffold1000 WUBlastX DNA_hAT 256886 257053 49 + . . scaffold1000 GLEAN mRNA 254688 266328 0.650465 + . ID=CGI_10013084; scaffold266 WUBlastX DNA_hAT-Tip100 54669 54896 51 + . . scaffold266 GLEAN mRNA 46310 60131 0.998446 - . ID=CGI_10013346; scaffold1307 WUBlastX LINE_L2 197508 197867 46 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L2 35300 35380 31 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_L2 232262 232489 65 - . . . . . -1 -1 -1 . . . scaffold1651 WUBlastX LINE_CR1-L2 158708 158848 44 + . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX LTR_Gypsy 112930 113139 75 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy-Cigr 382223 382480 83 - . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LTR_Gypsy 93808 93939 57 + . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LINE_RTE-BovB 223132 223215 29 - . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold257 WUBlastX DNA_En-Spm 1276661 1276822 62 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_RTE-BovB 103046 103438 38 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_ERV1 128125 128211 20 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 553839 554153 74 - . . . . . -1 -1 -1 . . . scaffold617 WUBlastX LTR_DIRS 60599 60787 33 - . . . . . -1 -1 -1 . . . scaffold617 WUBlastX LTR_DIRS 60950 61363 43 - . . . . . -1 -1 -1 . . . C36680 WUBlastX LINE_L2 10355 10420 21 - . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; scaffold1445 WUBlastX LTR_DIRS 51234 51629 40 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_DIRS 126072 126293 45 + . . . . . -1 -1 -1 . . . scaffold39326 WUBlastX LTR_DIRS? 61568 61714 56 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LTR_Gypsy 548046 548261 72 - . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LTR_Gypsy 321126 321326 61 - . . scaffold445 GLEAN mRNA 299978 341164 0.811094 - . ID=CGI_10019444; scaffold926 WUBlastX LTR_Gypsy 48567 48764 22 - . . . . . -1 -1 -1 . . . scaffold621 WUBlastX LTR_Gypsy 153332 154258 27 - . . scaffold621 GLEAN mRNA 154047 155567 0.573337 - . ID=CGI_10017674; scaffold621 WUBlastX LTR_Gypsy 153332 154258 27 - . . scaffold621 GLEAN mRNA 127381 238205 0.796035 + . ID=CGI_10017672; scaffold1726 WUBlastX LTR_Gypsy 292401 292889 56 - . . scaffold1726 GLEAN mRNA 280850 293294 0.426779 - . ID=CGI_10015637; scaffold43358 WUBlastX LTR_Gypsy 34407 34688 82 - . . . . . -1 -1 -1 . . . scaffold789 WUBlastX LTR_Gypsy 323620 323952 83 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold789 WUBlastX LTR_Gypsy 323626 324021 68 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold38492 WUBlastX LTR_Gypsy 8458 8613 79 + . . . . . -1 -1 -1 . . . scaffold891 WUBlastX DNA_Harbinger 166031 166267 39 + . . . . . -1 -1 -1 . . . C31070 WUBlastX DNA_IS4EU 4331 5209 31 - . . C31070 GLEAN mRNA 4205 5578 0.992577 - . ID=CGI_10000699; scaffold1497 WUBlastX LINE_I 153377 153457 22 - . . scaffold1497 GLEAN mRNA 148119 156729 0.749146 - . ID=CGI_10006968; scaffold1149 WUBlastX LTR_Gypsy 452381 452809 39 - . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX DNA_TcMar-Marin 850 948 20 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_IS4EU 201428 201649 40 - . . scaffold502 GLEAN mRNA 200661 204123 0.612374 - . ID=CGI_10024316; C27658 WUBlastX DNA_Kolobok-IS4 2344 2445 20 + . . . . . -1 -1 -1 . . . C27658 WUBlastX DNA_Kolobok-IS4 2901 3035 42 + . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_Kolobok 302801 303007 30 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold499 WUBlastX LTR_Ngaro 196750 197037 72 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Ngaro 198104 198391 72 + . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Ngaro 302186 302356 60 - . . . . . -1 -1 -1 . . . scaffold1767 WUBlastX LTR_Copia 174026 174166 32 - . . scaffold1767 GLEAN mRNA 173957 180250 0.633694 - . ID=CGI_10016910; scaffold31002 WUBlastX DNA_TcMar-Marin 5329 5406 43 - . . . . . -1 -1 -1 . . . scaffold32118 WUBlastX DNA_TcMar-Marin 8839 9033 41 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX DNA_TcMar-Marin 65741 65809 34 - . . . . . -1 -1 -1 . . . scaffold1078 WUBlastX DNA_TcMar-Marin 27957 28109 57 - . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LINE_Penelope 77248 77523 45 - . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_Merlin 433571 433750 67 - . . . . . -1 -1 -1 . . . C34310 WUBlastX DNA_Kolobok-Hyd 730 1218 25 - . . . . . -1 -1 -1 . . . scaffold43278 WUBlastX LINE_Penelope 20747 20848 46 - . . . . . -1 -1 -1 . . . scaffold432 WUBlastX LINE_RTE-BovB 495366 495632 72 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_RTE-BovB 191902 192249 54 - . . . . . -1 -1 -1 . . . scaffold35194 WUBlastX DNA_Maverick 12713 13312 54 - . . . . . -1 -1 -1 . . . scaffold33046 WUBlastX DNA_Maverick 7372 7551 43 + . . . . . -1 -1 -1 . . . scaffold713 WUBlastX LINE_RTE-BovB 42307 42402 36 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_Proto2 123719 123949 43 + . . scaffold896 GLEAN mRNA 120712 129433 0.394415 + . ID=CGI_10022834; scaffold280 WUBlastX DNA_PiggyBac 361391 361882 30 + . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LINE_RTE-X 331778 332032 28 + . . scaffold967 GLEAN mRNA 330769 334091 1 + . ID=CGI_10015463; scaffold313 WUBlastX LINE_RTE-X 1189906 1190025 41 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold1362 WUBlastX LINE_RTE-X 565157 565240 38 + . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX LINE_RTE-X 106637 106894 30 + . . . . . -1 -1 -1 . . . scaffold32618 WUBlastX LINE_RTE-X 1400 1441 28 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_RTE-X 1238063 1238218 82 + . . . . . -1 -1 -1 . . . C34546 WUBlastX LINE_RTE-X 16637 16801 68 - . . . . . -1 -1 -1 . . . scaffold1868 WUBlastX LINE_RTE-X 168873 168995 42 + . . scaffold1868 GLEAN mRNA 166977 179463 0.984982 - . ID=CGI_10007985; scaffold563 WUBlastX LINE_RTE-X 601798 602136 48 - . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LINE_RTE-X 170402 170530 50 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 176743 176868 58 + . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LTR_Gypsy 257238 257564 35 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LINE_RTE-X 174250 174555 26 - . . . . . -1 -1 -1 . . . scaffold41358 WUBlastX LINE_RTE-X 23314 23598 25 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX DNA_TcMar-Tc1 208704 208877 56 + . . . . . -1 -1 -1 . . . C34436 WUBlastX DNA_Sola 8265 8492 55 + . . C34436 GLEAN mRNA 5678 8936 0.999934 + . ID=CGI_10001295; scaffold714 WUBlastX LINE_Jockey 20793 20834 20 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 27125 27307 21 - . . . . . -1 -1 -1 . . . scaffold1233 WUBlastX DNA_TcMar-Tc1 59396 59452 42 - . . . . . -1 -1 -1 . . . scaffold1233 WUBlastX DNA_TcMar-Tc1 59594 59653 42 - . . . . . -1 -1 -1 . . . scaffold1233 WUBlastX DNA_TcMar-Tc1 59366 59452 29 - . . . . . -1 -1 -1 . . . scaffold787 WUBlastX DNA_PiggyBac 85505 85624 39 + . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Gypsy 296065 296391 53 - . . . . . -1 -1 -1 . . . scaffold374 WUBlastX DNA_TcMar-Fot1 278073 278171 24 - . . . . . -1 -1 -1 . . . scaffold105 WUBlastX LINE_RTE-X 419972 420070 38 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-X 55208 55330 50 - . . . . . -1 -1 -1 . . . scaffold41356 WUBlastX LINE_RTE-X 52399 52611 46 - . . scaffold41356 GLEAN mRNA 23583 56717 0.908715 - . ID=CGI_10004994; scaffold41356 WUBlastX LINE_RTE-X 52399 52611 46 - . . scaffold41356 GLEAN mRNA 49810 66673 0.811456 + . ID=CGI_10004995; scaffold1067 WUBlastX LINE_RTE-X 37095 37220 43 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1-Tx1 532933 533031 25 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LTR_Copia 218670 219113 30 - . . scaffold1650 GLEAN mRNA 171974 251292 0.504113 - . ID=CGI_10017775; scaffold382 WUBlastX LINE_CR1-L2 1864 1986 24 - . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_CR1 135934 136101 99 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_CR1 1216741 1216965 80 + . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_L2 54267 54479 61 - . . . . . -1 -1 -1 . . . scaffold33412 WUBlastX LINE_L2 6822 7025 51 + . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 28662 29132 41 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Harbinger 413873 414139 34 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold415 WUBlastX DNA_IS4EU 6572 6829 68 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_I 713307 713843 27 + . . . . . -1 -1 -1 . . . C34562 WUBlastX DNA_IS4EU 7341 7820 38 + . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX DNA_IS4EU 206716 206943 22 + . . scaffold1031 GLEAN mRNA 202896 208011 0.999658 - . ID=CGI_10019698; scaffold37438 WUBlastX DNA_TcMar-Tc1 3460 4266 51 - . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LINE_L2 382169 382336 60 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_Penelope 94121 94699 34 - . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold1845 WUBlastX LINE_L1-Tx1 145839 146045 42 + . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LINE_L1 172503 172976 67 - . . . . . -1 -1 -1 . . . scaffold469 WUBlastX LINE_RTE-BovB 305023 305250 77 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX DNA_PiggyBac 1331836 1332051 36 - . . scaffold1179 GLEAN mRNA 1331773 1332764 0.992318 - . ID=CGI_10027421; scaffold33924 WUBlastX DNA_MuDR 304 585 48 + . . scaffold33924 GLEAN mRNA 262 597 0.999068 + . ID=CGI_10001172; scaffold43182 WUBlastX LTR_Gypsy 129396 129827 81 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX DNA 151603 151785 32 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX DNA 151787 152032 74 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_CR1 208411 208776 56 + . . . . . -1 -1 -1 . . . scaffold41206 WUBlastX LTR_Copia 62678 62827 20 + . . . . . -1 -1 -1 . . . scaffold916 WUBlastX LINE_Jockey 77517 77828 50 + . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LTR_Gypsy 30107 30685 62 - . . . . . -1 -1 -1 . . . scaffold1794 WUBlastX LTR_Gypsy 477697 478272 51 - . . . . . -1 -1 -1 . . . scaffold1032 WUBlastX LINE_R2-Hero 708245 708958 27 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold43 WUBlastX LINE_Penelope 124522 124848 79 + . . . . . -1 -1 -1 . . . C33464 WUBlastX LINE_Penelope 10868 11353 44 - . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_Penelope 340805 341173 79 - . . . . . -1 -1 -1 . . . scaffold759 WUBlastX DNA_P 115554 115808 78 + . . . . . -1 -1 -1 . . . scaffold1656 WUBlastX LINE_Penelope 6424 6720 56 - . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX LINE_Penelope 110279 110890 58 - . . . . . -1 -1 -1 . . . C10153 WUBlastX LTR_Pao 3 158 109 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX LINE_L2 104480 104902 91 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_L2 107484 107963 87 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LINE_CR1-L2 18358 18753 59 - . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 347756 348475 84 + . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_MuDR 61321 62307 70 + . . . . . -1 -1 -1 . . . scaffold1299 WUBlastX LINE_L1 140007 140579 95 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold378 WUBlastX LINE_L1-Tx1 255095 255250 108 - . . scaffold378 GLEAN mRNA 247048 256613 0.78919 - . ID=CGI_10017643; scaffold1036 WUBlastX DNA_Maverick 205544 205930 56 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1097 WUBlastX LINE_RTE-BovB 608449 608808 71 + . . . . . -1 -1 -1 . . . scaffold40184 WUBlastX LINE_RTE-X 36173 36487 51 - . . . . . -1 -1 -1 . . . scaffold1366 WUBlastX LINE_RTE-X 140956 141105 93 - . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_RTE-X 53393 53701 80 + . . . . . -1 -1 -1 . . . scaffold39096 WUBlastX LTR_Gypsy 22783 23196 74 + . . scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold43956 WUBlastX DNA_IS4EU 101353 102258 67 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_Harbinger 285981 286592 100 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_L1 362029 362811 106 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_TcMar-Fot1 64890 65081 73 - . . scaffold681 GLEAN mRNA 61241 68104 0.482696 + . ID=CGI_10014722; scaffold1362 WUBlastX LINE_RTE-X 698043 698309 24 - . . scaffold1362 GLEAN mRNA 691736 715477 0.999895 - . ID=CGI_10023954; scaffold1362 WUBlastX LINE_RTE-X 698354 698794 22 - . . scaffold1362 GLEAN mRNA 691736 715477 0.999895 - . ID=CGI_10023954; scaffold1404 WUBlastX LINE_RTE-X 206067 206531 60 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX LINE_RTE-X 328306 328617 80 - . . . . . -1 -1 -1 . . . scaffold594 WUBlastX LINE_RTE-X 416400 416738 44 - . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_L2 88776 89441 93 + . . scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold1717 WUBlastX LINE_L2 160215 160529 80 - . . . . . -1 -1 -1 . . . scaffold35444 WUBlastX LTR_Gypsy-Cigr 5925 6095 63 - . . scaffold35444 GLEAN mRNA 591 6430 0.999654 - . ID=CGI_10001555; scaffold53 WUBlastX LINE_L2 1071497 1071682 23 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX DNA_Harbinger 343436 344365 70 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LTR_Gypsy 932720 932884 134 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_L1 58305 59237 39 - . . . . . -1 -1 -1 . . . scaffold191 WUBlastX DNA_Kolobok 205129 205314 54 + . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX LINE_L1 155770 156012 34 + . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX LINE_L1 105361 105525 61 - . . . . . -1 -1 -1 . . . scaffold43598 WUBlastX LINE_RTE-X 16760 17020 74 + . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LINE_RTE-X 286548 286898 71 + . . . . . -1 -1 -1 . . . scaffold444 WUBlastX LINE_RTE-BovB 72446 72625 99 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LINE_RTE-BovB 496154 496393 103 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_Maverick 205025 205123 39 - . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1833 WUBlastX LINE_L2 15107 15358 34 - . . . . . -1 -1 -1 . . . scaffold838 WUBlastX LTR_Gypsy 25370 25663 119 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LTR_Gypsy 4557 5168 105 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 150313 150870 139 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX DNA_Harbinger 130733 131107 72 - . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LINE_Proto2 165580 166440 44 + . . scaffold381 GLEAN mRNA 121685 178510 0.998567 - . ID=CGI_10017555; scaffold87 WUBlastX LINE_RTE-X 27266 27511 140 + . . . . . -1 -1 -1 . . . scaffold658 WUBlastX LINE_RTE-X 151888 152133 102 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_RTE-X 213153 213398 102 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy 715561 716106 89 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_TcMar-Tc2 481385 481714 137 - . . . . . -1 -1 -1 . . . scaffold1608 WUBlastX DNA_MuDR 73089 73403 109 + . . . . . -1 -1 -1 . . . C24596 WUBlastX LINE_Penelope 180 602 60 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_I 590348 590611 45 - . . . . . -1 -1 -1 . . . scaffold630 WUBlastX DNA_Crypton 323450 323788 65 + . . . . . -1 -1 -1 . . . scaffold630 WUBlastX DNA_Crypton 323794 323955 43 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Gypsy 301777 301899 111 + . . . . . -1 -1 -1 . . . scaffold43956 WUBlastX DNA_Kolobok-IS4 101021 101419 49 - . . . . . -1 -1 -1 . . . scaffold1081 WUBlastX DNA_Maverick 63228 63968 73 - . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Ngaro 378558 378905 168 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 140537 141205 390 - . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold40982 WUBlastX LTR_DIRS 85385 85672 173 + . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_DIRS 86174 86383 109 + . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX DNA_Crypton 201664 201903 43 + . . . . . -1 -1 -1 . . . scaffold42946 WUBlastX DNA_Crypton 202198 202359 67 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_Kolobok 77700 78026 109 + . . . . . -1 -1 -1 . . . scaffold213 WUBlastX DNA_Kolobok 79021 79149 41 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_RTE-X 1690603 1690869 45 - . . . . . -1 -1 -1 . . . scaffold408 WUBlastX LTR_Pao 254343 255530 243 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_Gypsy 173531 173821 38 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 382777 383115 139 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 383315 383998 432 - . . . . . -1 -1 -1 . . . scaffold41358 WUBlastX LINE_RTE-X 30567 32264 903 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_L1-Tx1 258997 260127 200 - . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-X 274953 276695 857 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_RTE-BovB 104293 104958 93 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy 862384 862938 162 + . . scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1819 WUBlastX LTR_Gypsy 49667 50404 141 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1098111 1098782 150 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold358 WUBlastX LINE_L1-Tx1 79775 80050 68 - . . . . . -1 -1 -1 . . . scaffold36118 WUBlastX LTR_Gypsy 1688 2425 93 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_L1-Tx1 10042 10311 22 - . . scaffold413 GLEAN mRNA 9716 19114 0.940957 - . ID=CGI_10022791; scaffold1329 WUBlastX LINE_RTE-X 262749 262994 46 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LINE_RTE-X 366581 367009 76 + . . . . . -1 -1 -1 . . . scaffold808 WUBlastX LINE_RTE-BovB 143070 143399 134 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LINE_L1-Tx1 244808 245302 89 + . . . . . -1 -1 -1 . . . scaffold36034 WUBlastX LINE_Penelope 8360 8746 81 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX DNA_Sola 224218 224736 164 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 331469 331624 45 + . . scaffold1307 GLEAN mRNA 323239 332767 0.901731 + . ID=CGI_10023754; scaffold453 WUBlastX LTR_Gypsy 304342 304941 286 + . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold37426 WUBlastX LTR_DIRS 6518 8179 693 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_L2 18401 20833 1137 - . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LTR_Gypsy 105614 109222 1229 + . . scaffold1459 GLEAN mRNA 92847 117435 0.999674 - . ID=CGI_10010107; scaffold41304 WUBlastX LINE_L1-Tx1 114642 115640 266 + . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX DNA_Harbinger 64408 64518 44 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 96064 96450 310 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Gypsy 677122 678039 438 - . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold471 WUBlastX LTR_Gypsy-Cigr 272733 274034 832 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Gypsy-Cigr 274000 274842 559 + . . . . . -1 -1 -1 . . . scaffold369 WUBlastX LINE_Penelope 161489 161947 30 + . . scaffold369 GLEAN mRNA 147278 163434 0.70167 + . ID=CGI_10006958; scaffold369 WUBlastX LINE_Penelope 162595 162900 123 + . . scaffold369 GLEAN mRNA 147278 163434 0.70167 + . ID=CGI_10006958; scaffold38284 WUBlastX LTR_Gypsy 37612 38214 202 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L1-Tx1 283152 283307 49 - . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX RC_Helitron 85961 86386 50 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L2 22521 23147 219 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_L2 23357 23464 20 - . . . . . -1 -1 -1 . . . scaffold37968 WUBlastX LINE_L2 10901 12565 834 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 1432311 1433003 165 + . . . . . -1 -1 -1 . . . scaffold39500 WUBlastX LTR_Gypsy-Cigr 19790 20287 354 - . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_CR1 442932 443093 32 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 550483 550596 33 - . . scaffold1018 GLEAN mRNA 547902 567181 0.39343 + . ID=CGI_10019779; scaffold1144 WUBlastX LINE_RTE-X 331242 331658 166 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L1-Tx1 155407 155727 45 + . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX LINE_L1-Tx1 979507 980022 171 - . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_PiggyBac 231549 232010 72 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_PiggyBac 232559 232738 57 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy-Troyk 361039 361713 611 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy-Troyk 361850 362392 340 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy-Troyk 362389 363543 459 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy-Troyk 363543 363707 84 + . . . . . -1 -1 -1 . . . scaffold723 WUBlastX LTR_Gypsy-Troyk 364023 364208 160 + . . . . . -1 -1 -1 . . . scaffold37430 WUBlastX LTR_Pao 38154 38459 205 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 38473 39795 579 - . . scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 42761 43081 82 - . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX DNA_Harbinger 107925 108278 170 - . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX DNA_Harbinger 107572 107727 80 - . . . . . -1 -1 -1 . . . scaffold683 WUBlastX RC_Helitron 140418 140642 143 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_L1-Tx1 1445696 1446265 106 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LINE_CR1 400198 400386 40 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LTR_Ngaro 539929 540378 110 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 180678 181493 169 + . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Gypsy 602222 605056 2011 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LTR_Gypsy 245407 245739 88 - . . . . . -1 -1 -1 . . . scaffold1112 WUBlastX LINE_CR1 68689 69957 121 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_RTE-X 437141 437596 46 - . . scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437141 437596 46 - . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold1403 WUBlastX DNA_Sola 152807 153829 168 + . . scaffold1403 GLEAN mRNA 150469 154318 0.999879 + . ID=CGI_10020163; scaffold39508 WUBlastX LINE_L1 4515 4613 23 - . . . . . -1 -1 -1 . . . scaffold467 WUBlastX LINE_CR1 44362 44787 39 + . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 471715 471948 128 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 472194 472424 66 + . . scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold43538 WUBlastX LINE_RTE-X 104548 104958 262 + . . . . . -1 -1 -1 . . . C35760 WUBlastX LTR_Gypsy 25189 26556 534 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Pao 190252 196254 2122 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_L2 1085079 1085324 34 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold1859 WUBlastX LINE_CR1 48194 48394 87 - . . . . . -1 -1 -1 . . . C28030 WUBlastX LINE_L1 718 996 187 + . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LINE_L1-Tx1 111357 111956 242 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_RTE-X 116921 117208 69 + . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1-Tx1 13665 13733 40 - . . . . . -1 -1 -1 . . . scaffold35796 WUBlastX LINE_L1-Tx1 14931 15392 66 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 62584 63471 622 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 63594 64394 741 - . . . . . -1 -1 -1 . . . scaffold41898 WUBlastX LTR_Gypsy 64392 64814 403 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX DNA_Sola 949053 949226 30 + . . . . . -1 -1 -1 . . . scaffold1564 WUBlastX LINE_L2 4446 4994 134 + . . . . . -1 -1 -1 . . . scaffold1564 WUBlastX LINE_L2 5017 5496 60 + . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L2 290897 291376 60 - . . . . . -1 -1 -1 . . . scaffold753 WUBlastX LINE_L2 291399 291947 134 - . . . . . -1 -1 -1 . . . scaffold1893 WUBlastX DNA_Kolobok-IS4 202361 203050 205 - . . scaffold1893 GLEAN mRNA 199713 203993 0.999824 + . ID=CGI_10008861; scaffold20 WUBlastX DNA_TcMar-Fot1 4296 4970 197 - . . scaffold20 GLEAN mRNA 478 8308 1 - . ID=CGI_10023555; scaffold1069 WUBlastX LINE_RTE-BovB 1 354 250 + . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LINE_L1-Tx1 236779 236850 44 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold43964 WUBlastX LINE_Penelope 329422 330063 162 + . . scaffold43964 GLEAN mRNA 323260 333228 0.634978 + . ID=CGI_10014658; scaffold257 WUBlastX DNA_TcMar-Tc2 474272 474670 280 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_TcMar-Tc1 174764 175300 222 - . . scaffold772 GLEAN mRNA 173305 179319 1 + . ID=CGI_10016584; scaffold1561 WUBlastX LINE_RTE-BovB 100353 100454 21 - . . scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold78 WUBlastX LTR_Gypsy 51846 51953 35 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LTR_DIRS 500536 500784 112 - . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_RTE-BovB 219955 220254 136 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1 1483357 1483683 90 - . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1 197582 197998 47 - . . . . . -1 -1 -1 . . . scaffold38006 WUBlastX LINE_L2 44772 44969 94 - . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_L2 969465 969518 21 + . . scaffold211 GLEAN mRNA 954777 972416 0.999996 - . ID=CGI_10026971; scaffold189 WUBlastX DNA_Crypton 368992 369672 237 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX DNA_Crypton 369955 370311 98 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 420939 421763 37 + . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold790 WUBlastX LTR_Gypsy-Cigr 229279 229626 206 - . . . . . -1 -1 -1 . . . scaffold2 WUBlastX LTR_Pao 201 629 393 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 392123 393085 394 + . . scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold773 WUBlastX DNA_Maverick 235331 235966 410 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold1179 WUBlastX LTR_Gypsy 22192 22623 334 + . . scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1869 WUBlastX LINE_L1 96803 97030 21 - . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 653746 654027 74 - . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LINE_RTE-X 454392 455174 405 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_hAT-hATw 136250 136708 121 + . . scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold1883 WUBlastX LTR_Gypsy 125826 126191 65 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_L1-Tx1 189804 190298 352 + . . scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold593 WUBlastX LTR_Pao 268644 269756 252 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LINE_CR1-L2 343055 343711 43 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; C26128 WUBlastX LINE_R2 694 1368 291 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX DNA_En-Spm 187889 189517 418 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold967 WUBlastX LINE_L1 36296 36529 37 - . . . . . -1 -1 -1 . . . scaffold827 WUBlastX LINE_L1-Tx1 30748 31395 230 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_RTE-X 359410 359931 110 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LINE_RTE-X 360762 361844 236 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1-Tx1 596101 596391 31 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Gypsy 1174720 1175280 295 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 67407 67691 68 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_hAT-Tip100 433340 434011 145 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_hAT-Tip100 434049 434873 366 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_L1 164178 165185 389 - . . . . . -1 -1 -1 . . . C30072 WUBlastX LINE_RTE-X 3289 3540 92 + . . . . . -1 -1 -1 . . . C30072 WUBlastX LINE_RTE-X 3552 3908 28 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LINE_RTE-X 84158 84373 36 - . . scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold90 WUBlastX DNA_En-Spm 191204 191806 239 + . . . . . -1 -1 -1 . . . scaffold715 WUBlastX LTR_Gypsy 18610 19602 462 + . . . . . -1 -1 -1 . . . scaffold339 WUBlastX LTR_Gypsy 27844 28170 46 - . . . . . -1 -1 -1 . . . scaffold40492 WUBlastX LINE_RTE-BovB 44855 44980 26 + . . . . . -1 -1 -1 . . . scaffold36906 WUBlastX LTR_DIRS 17224 18072 338 - . . scaffold36906 GLEAN mRNA 239 18767 0.841273 + . ID=CGI_10002185; scaffold204 WUBlastX LINE_CR1 1079253 1080467 532 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Ngaro 10559 10942 241 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 90263 90955 207 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Ngaro 426375 426593 41 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_TcMar-Pogo 1005451 1006008 46 + . . . . . -1 -1 -1 . . . scaffold1124 WUBlastX LTR_Gypsy 7539 8399 198 - . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LTR_Gypsy 9950 10453 99 - . . . . . -1 -1 -1 . . . C30526 WUBlastX DNA_TcMar-Tc2 2452 2640 106 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Pao 266270 266491 87 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_RTE-X 507420 508085 103 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Gypsy 92008 92265 33 - . . . . . -1 -1 -1 . . . scaffold42060 WUBlastX LINE_RTE-X 75436 76296 274 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Ngaro 79054 79422 234 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 79446 80180 481 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 80174 80482 82 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold1616 WUBlastX LTR_DIRS 91411 91638 50 + . . scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold21 WUBlastX LTR_Gypsy 10034 10453 105 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Pao 70175 70462 37 - . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LINE_L1 9338 9727 70 - . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy-Cigr 81641 82180 34 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Copia 1094723 1094959 59 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold1094 WUBlastX LTR_Copia 552546 552698 50 - . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LTR_DIRS 632990 633226 40 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Pao 1099612 1099680 20 - . . . . . -1 -1 -1 . . . scaffold42704 WUBlastX LINE_Rex-Babar 128792 129115 31 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_L1 361368 361457 69 - . . . . . -1 -1 -1 . . . C26726 WUBlastX LTR_Pao 2557 2649 57 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Pao 101635 101751 22 + . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Copia 825814 826014 41 - . . . . . -1 -1 -1 . . . scaffold35568 WUBlastX LINE_L1 3103 3378 21 + . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_L1 20971 21246 21 + . . . . . -1 -1 -1 . . . scaffold143 WUBlastX LINE_L1 1992 2267 21 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX LINE_L1 389434 389763 28 - . . scaffold557 GLEAN mRNA 389014 397940 0.685724 - . ID=CGI_10017978; scaffold1194 WUBlastX LINE_L1 3554 3883 28 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX DNA_hAT-Tip100 142071 142376 58 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L2 434919 435095 45 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L2 435167 435277 21 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_CR1-L2 370711 370899 32 + . . scaffold1101 GLEAN mRNA 366979 390760 0.569292 + . ID=CGI_10023023; scaffold280 WUBlastX LINE_CR1 175837 176223 30 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LINE_L2 112427 112885 26 + . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX LINE_L2 39319 39639 36 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LINE_CR1 171063 171215 63 + . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold43954 WUBlastX LINE_CR1 146684 146836 40 + . . scaffold43954 GLEAN mRNA 139153 149832 0.999998 - . ID=CGI_10014576; scaffold59 WUBlastX LINE_CR1 211999 212217 54 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_CR1-L2 67264 67374 52 + . . . . . -1 -1 -1 . . . scaffold41740 WUBlastX LINE_L2 22213 22509 20 - . . scaffold41740 GLEAN mRNA 21190 30083 0.963667 - . ID=CGI_10005584; scaffold370 WUBlastX LINE_CR1-L2 604390 604431 27 - . . . . . -1 -1 -1 . . . scaffold307 WUBlastX LINE_CR1-L2 884 1123 34 + . . . . . -1 -1 -1 . . . C15908 WUBlastX LINE_L2 75 323 71 - . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_CR1 171381 171461 61 + . . . . . -1 -1 -1 . . . scaffold33466 WUBlastX LINE_CR1 7326 7511 28 + . . scaffold33466 GLEAN mRNA 1922 13916 0.999896 - . ID=CGI_10001069; scaffold748 WUBlastX LINE_L2 260652 261011 62 - . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX LINE_CR1 175182 175505 22 - . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_CR1 220199 220522 22 - . . scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold204 WUBlastX LINE_CR1 407459 407782 22 - . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold471 WUBlastX LTR_Ngaro 502957 503289 54 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Ngaro 386942 387121 64 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Ngaro 4892 5518 22 - . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX LINE_L2 158443 158622 21 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX LINE_CR1 73373 73591 32 - . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX LINE_L2 35177 35263 28 - . . . . . -1 -1 -1 . . . scaffold977 WUBlastX DNA_TcMar-Fot1 302595 303050 74 + . . . . . -1 -1 -1 . . . scaffold1711 WUBlastX LTR_Gypsy 339481 340017 41 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_Gypsy 337289 337549 40 + . . . . . -1 -1 -1 . . . scaffold1062 WUBlastX LTR_Gypsy 75968 76102 85 + . . scaffold1062 GLEAN mRNA 68876 80668 0.64555 + . ID=CGI_10005741; scaffold43956 WUBlastX LTR_Gypsy 24063 24389 60 + . . . . . -1 -1 -1 . . . scaffold41466 WUBlastX LTR_Gypsy 36114 36362 26 + . . . . . -1 -1 -1 . . . scaffold41466 WUBlastX LTR_Gypsy 36379 36561 51 + . . . . . -1 -1 -1 . . . scaffold1715 WUBlastX LTR_Gypsy 333528 333641 29 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1773 WUBlastX LTR_Gypsy 83864 84037 36 - . . scaffold1773 GLEAN mRNA 83391 85072 0.980126 - . ID=CGI_10011225; scaffold1701 WUBlastX LTR_Gypsy 27267 27392 50 - . . . . . -1 -1 -1 . . . scaffold1701 WUBlastX LTR_Gypsy 27397 27588 34 - . . . . . -1 -1 -1 . . . scaffold1701 WUBlastX LTR_Gypsy 40916 41206 37 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LTR_Gypsy 321713 321826 24 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LTR_Gypsy 322035 322181 55 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Gypsy 635005 635295 44 - . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LTR_Gypsy 148208 149065 23 - . . scaffold42392 GLEAN mRNA 146946 151067 0.782062 + . ID=CGI_10006786; scaffold75 WUBlastX DNA_Harbinger 43381 43677 67 - . . scaffold75 GLEAN mRNA 41103 44837 0.980383 + . ID=CGI_10005789; scaffold6 WUBlastX DNA_Harbinger 611426 611722 67 - . . scaffold6 GLEAN mRNA 604472 612930 0.854712 - . ID=CGI_10022329; scaffold43662 WUBlastX DNA_Harbinger 38896 39069 30 - . . . . . -1 -1 -1 . . . scaffold1663 WUBlastX DNA_Harbinger 157239 157412 36 - . . . . . -1 -1 -1 . . . scaffold1423 WUBlastX DNA_Harbinger 674007 674138 39 - . . scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold20 WUBlastX DNA_Harbinger 526034 526195 66 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Harbinger 385851 386024 42 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_Harbinger 701998 702150 51 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold934 WUBlastX DNA_Harbinger 254887 255024 67 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_hAT-Tip100 714890 715072 38 + . . . . . -1 -1 -1 . . . scaffold896 WUBlastX RC_Helitron 44680 44946 72 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LINE_R2-Hero 177652 177801 64 - . . . . . -1 -1 -1 . . . scaffold737 WUBlastX RC_Helitron 91765 91842 21 + . . . . . -1 -1 -1 . . . C30872 WUBlastX DNA_IS4EU 6203 6502 63 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX DNA_IS4EU 138540 138935 69 - . . scaffold1769 GLEAN mRNA 137555 138587 0.999507 - . ID=CGI_10009241; scaffold39966 WUBlastX DNA_IS4EU 25227 25325 74 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_IS4EU 68308 68583 40 - . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold1750 WUBlastX LINE_L1 670470 670610 67 + . . . . . -1 -1 -1 . . . scaffold391 WUBlastX LINE_L1 6559 7164 24 + . . . . . -1 -1 -1 . . . scaffold775 WUBlastX LINE_L1-Tx1 133109 133438 26 + . . . . . -1 -1 -1 . . . scaffold358 WUBlastX LINE_L1-Tx1 93368 93727 53 - . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LINE_L1 15348 15608 58 - . . scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold189 WUBlastX LINE_L1 133843 134025 51 - . . . . . -1 -1 -1 . . . scaffold41390 WUBlastX DNA_Kolobok-Hyd 61147 61356 26 - . . scaffold41390 GLEAN mRNA 60426 61284 0.672974 - . ID=CGI_10004990; scaffold626 WUBlastX DNA_Kolobok 579689 579940 29 + . . . . . -1 -1 -1 . . . scaffold34596 WUBlastX DNA_TcMar-Marin 16774 17160 46 + . . . . . -1 -1 -1 . . . scaffold1437 WUBlastX DNA_TcMar-Fot1 20625 20804 60 + . . scaffold1437 GLEAN mRNA 9816 21221 0.99909 + . ID=CGI_10003664; scaffold591 WUBlastX DNA_TcMar-Tc2 1078928 1079140 55 + . . scaffold591 GLEAN mRNA 1079117 1079341 0.732046 + . ID=CGI_10027597; scaffold1314 WUBlastX DNA_MuDR 131697 131954 56 + . . scaffold1314 GLEAN mRNA 129407 131981 0.985091 + . ID=CGI_10009308; scaffold43598 WUBlastX LINE_Penelope 177410 177694 54 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_Penelope 1210303 1210455 67 + . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX DNA_NOF? 39353 39880 22 + . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX DNA_NOF 39362 39760 31 + . . . . . -1 -1 -1 . . . scaffold496 WUBlastX DNA_NOF 704233 704502 44 - . . . . . -1 -1 -1 . . . scaffold1892 WUBlastX LINE_Penelope 183913 184338 26 - . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Penelope 28688 28963 47 - . . . . . -1 -1 -1 . . . scaffold36768 WUBlastX LINE_Penelope 19203 19421 56 - . . . . . -1 -1 -1 . . . C32532 WUBlastX LINE_I-Nimb 435 1109 37 - . . C32532 GLEAN mRNA 384 737 0.987944 - . ID=CGI_10000908; scaffold678 WUBlastX LINE_L1 61151 61201 23 - . . . . . -1 -1 -1 . . . scaffold35694 WUBlastX LINE_RTE-BovB 17172 17312 41 - . . . . . -1 -1 -1 . . . scaffold40982 WUBlastX LTR_Gypsy 80491 80622 21 + . . . . . -1 -1 -1 . . . scaffold1693 WUBlastX LINE_RTE-X 19950 20219 53 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 655720 655932 72 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 267480 267776 23 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold586 WUBlastX LINE_RTE-X 28607 28774 82 + . . . . . -1 -1 -1 . . . scaffold41380 WUBlastX LINE_RTE-BovB 67373 67651 33 - . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold115 WUBlastX LINE_RTE-X 176710 176949 53 + . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LINE_RTE-X 339586 339963 43 - . . scaffold43842 GLEAN mRNA 339574 339783 0.866307 - . ID=CGI_10013114; scaffold226 WUBlastX LINE_RTE-X 251619 251996 43 - . . scaffold226 GLEAN mRNA 251607 251816 0.999843 - . ID=CGI_10025347; scaffold1703 WUBlastX LINE_RTE-X 300018 300395 43 + . . . . . -1 -1 -1 . . . scaffold211 WUBlastX LINE_RTE-X 350124 350360 76 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 444323 444565 42 + . . . . . -1 -1 -1 . . . scaffold1328 WUBlastX LINE_RTE-X 226757 226972 46 - . . . . . -1 -1 -1 . . . scaffold43522 WUBlastX LINE_RTE-X 92491 92901 21 + . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold40068 WUBlastX LINE_RTE-X 69867 69968 80 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 48228 48368 67 + . . scaffold4 GLEAN mRNA 42612 56029 0.999937 + . ID=CGI_10021161; scaffold101 WUBlastX LINE_RTE-X 363090 363374 68 + . . . . . -1 -1 -1 . . . scaffold82 WUBlastX LINE_RTE-X 932405 932563 57 - . . . . . -1 -1 -1 . . . scaffold888 WUBlastX LINE_RTE-X 104739 104933 22 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LINE_RTE-X 377051 377431 38 - . . . . . -1 -1 -1 . . . scaffold34144 WUBlastX LINE_RTE-X 11731 12156 47 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_RTE-X 1022420 1022785 27 - . . . . . -1 -1 -1 . . . scaffold39320 WUBlastX LINE_RTE-X 13617 13739 72 + . . . . . -1 -1 -1 . . . scaffold1803 WUBlastX LINE_RTE-X 231262 231579 42 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_L1 127192 127422 55 - . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 9890 10012 20 + . . . . . -1 -1 -1 . . . C26620 WUBlastX DNA_PiggyBac 321 677 32 - . . . . . -1 -1 -1 . . . scaffold336 WUBlastX LINE_RTE-X 216305 216421 27 + . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold1791 WUBlastX LINE_RTE-X 48185 48259 30 - . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LINE_RTE-X 48271 48405 22 - . . . . . -1 -1 -1 . . . scaffold361 WUBlastX LINE_RTE-BovB 442420 442659 56 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_RTE-BovB 685531 685662 76 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_RTE-BovB 88924 89076 56 - . . scaffold471 GLEAN mRNA 84725 99079 0.999744 + . ID=CGI_10027000; scaffold888 WUBlastX LINE_RTE-X 206772 206900 48 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX DNA_TcMar-Tigge 592809 592871 35 - . . scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold40404 WUBlastX LINE_RTE-X 49481 49666 48 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Ngaro 411163 411711 31 - . . scaffold332 GLEAN mRNA 403551 412368 0.544643 + . ID=CGI_10020886; scaffold175 WUBlastX LTR_Gypsy 65677 66042 23 + . . scaffold175 GLEAN mRNA 65317 67044 0.999661 + . ID=CGI_10021303; scaffold337 WUBlastX LINE_L1-Tx1 1209841 1209969 28 + . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_L1-Tx1 321722 321928 69 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LINE_R1 584071 584196 24 - . . . . . -1 -1 -1 . . . scaffold1872 WUBlastX LTR_Gypsy 64696 65040 38 + . . . . . -1 -1 -1 . . . scaffold38354 WUBlastX LTR_Gypsy 3525 3809 64 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_hAT-Tip100 23884 23931 29 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Ngaro 167660 167857 49 - . . . . . -1 -1 -1 . . . scaffold36716 WUBlastX LINE_L1 23791 24300 63 + . . . . . -1 -1 -1 . . . scaffold315 WUBlastX LINE_RTE-X 305057 305173 30 + . . scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold43200 WUBlastX LINE_RTE-BovB 66171 66626 27 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_TcMar-Pogo 276269 276493 83 - . . . . . -1 -1 -1 . . . scaffold1447 WUBlastX LINE_RTE-X 63795 63911 37 - . . . . . -1 -1 -1 . . . scaffold1585 WUBlastX LINE_RTE-X 177811 177933 59 - . . . . . -1 -1 -1 . . . scaffold188 WUBlastX DNA_Sola 213232 213495 77 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LINE_CR1-L2 141762 142118 52 - . . . . . -1 -1 -1 . . . scaffold382 WUBlastX LINE_CR1 1498 1821 49 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Copia 17483 17533 20 + . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 7436 8074 71 + . . scaffold43136 GLEAN mRNA 7432 7635 0.999372 - . ID=CGI_10009000; scaffold1213 WUBlastX LTR_Gypsy-Cigr 1233279 1233605 41 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX DNA_En-Spm 168791 169216 44 + . . scaffold911 GLEAN mRNA 159613 170351 0.499121 + . ID=CGI_10012141; scaffold471 WUBlastX LTR_DIRS 745744 745863 32 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_DIRS 745842 745976 37 - . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_Jockey 224150 224548 48 - . . . . . -1 -1 -1 . . . scaffold885 WUBlastX DNA_Kolobok 14164 14334 58 - . . scaffold885 GLEAN mRNA 11627 19636 0.352613 - . ID=CGI_10025184; scaffold527 WUBlastX LINE_L1 309799 309858 45 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX DNA_TcMar-Marin 215317 215742 71 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_RTE-X 17943 18389 28 - . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold562 WUBlastX LINE_RTE-X 67970 68269 57 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LINE_RTE-X 68517 68816 57 + . . . . . -1 -1 -1 . . . scaffold585 WUBlastX LINE_RTE-BovB 108408 108920 40 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_RTE-X 868505 868798 35 - . . . . . -1 -1 -1 . . . scaffold42466 WUBlastX LINE_RTE-X 114795 115088 48 + . . scaffold42466 GLEAN mRNA 111968 131665 0.500645 + . ID=CGI_10006942; scaffold1021 WUBlastX LINE_L1-Tx1 617672 617899 23 - . . . . . -1 -1 -1 . . . C5669 WUBlastX LINE_L1-Tx1 4 123 99 + . . . . . -1 -1 -1 . . . scaffold675 WUBlastX LINE_CR1 67941 68012 41 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_Ngaro 285400 285651 51 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_Ngaro 286283 286399 28 - . . . . . -1 -1 -1 . . . scaffold522 WUBlastX LTR_Gypsy 555579 556106 45 - . . scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold1480 WUBlastX LINE_L1-Tx1 81363 81644 87 - . . . . . -1 -1 -1 . . . scaffold40080 WUBlastX LTR_Ngaro 61693 61962 109 - . . scaffold40080 GLEAN mRNA 45524 71991 0.583639 - . ID=CGI_10003845; scaffold34968 WUBlastX LINE_Penelope 20122 20277 108 - . . . . . -1 -1 -1 . . . scaffold644 WUBlastX LINE_L1-Tx1 84684 84824 43 - . . . . . -1 -1 -1 . . . scaffold917 WUBlastX DNA_IS4EU 148533 148595 30 + . . scaffold917 GLEAN mRNA 121193 151265 0.227919 + . ID=CGI_10011083; scaffold1794 WUBlastX LTR_DIRS 594787 595257 61 - . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX DNA_Zator 150687 151052 33 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX DNA_Zator 151727 152029 58 + . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_L2 181919 182113 77 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_Gypsy 114350 114571 81 + . . . . . -1 -1 -1 . . . scaffold786 WUBlastX DNA_En-Spm 204437 204679 56 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Gypsy 468341 468535 94 + . . . . . -1 -1 -1 . . . scaffold36872 WUBlastX LTR_Gypsy 9627 9974 22 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LINE_Proto2 134413 134547 20 - . . . . . -1 -1 -1 . . . scaffold40 WUBlastX DNA_TcMar-Marin 199770 200117 98 + . . . . . -1 -1 -1 . . . scaffold402 WUBlastX LINE_L1-Tx1 523747 524109 82 - . . scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold962 WUBlastX LINE_CR1-L2 747656 747811 55 + . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold1772 WUBlastX LINE_CR1 162067 162351 60 + . . . . . -1 -1 -1 . . . scaffold1688 WUBlastX LTR_Copia 67899 68138 23 - . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Gypsy 104390 104584 30 + . . . . . -1 -1 -1 . . . scaffold424 WUBlastX LTR_Gypsy 104598 104924 37 + . . . . . -1 -1 -1 . . . scaffold43206 WUBlastX LINE_R2-Hero 185888 185974 42 + . . . . . -1 -1 -1 . . . scaffold43206 WUBlastX LINE_R2-Hero 185967 186137 73 + . . . . . -1 -1 -1 . . . scaffold392 WUBlastX LTR_ERV1 126342 126422 22 - . . . . . -1 -1 -1 . . . scaffold42268 WUBlastX DNA_IS4EU 88865 89437 79 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX DNA_IS4EU 67645 67827 124 + . . scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold41398 WUBlastX LINE_L1-Tx1 33045 33194 33 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_L1 28813 28866 36 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_Penelope 1136747 1137046 38 + . . scaffold501 GLEAN mRNA 1134633 1191403 0.395005 - . ID=CGI_10027545; scaffold501 WUBlastX LINE_Penelope 1137013 1137153 35 + . . scaffold501 GLEAN mRNA 1134633 1191403 0.395005 - . ID=CGI_10027545; scaffold1506 WUBlastX LINE_RTE-BovB 48373 48513 57 - . . . . . -1 -1 -1 . . . C25804 WUBlastX LINE_RTE-X 1426 1629 124 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_RTE-X 337582 338034 48 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 676192 676593 46 + . . . . . -1 -1 -1 . . . scaffold1314 WUBlastX DNA_Sola 24317 25072 22 + . . scaffold1314 GLEAN mRNA 24248 26243 0.657792 + . ID=CGI_10009303; scaffold204 WUBlastX LINE_CR1-L2 320815 321213 26 + . . scaffold204 GLEAN mRNA 318709 324303 0.610548 - . ID=CGI_10026103; scaffold1354 WUBlastX LINE_L2 174082 174249 31 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold672 WUBlastX LINE_RTE-X 39210 39287 25 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 665636 665965 57 + . . scaffold77 GLEAN mRNA 661837 671903 1 - . ID=CGI_10027988; scaffold664 WUBlastX LINE_CR1 221013 221303 74 - . . scaffold664 GLEAN mRNA 213415 231457 0.897817 + . ID=CGI_10021440; scaffold1849 WUBlastX LTR_Pao 230416 230880 131 - . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Gypsy 312086 312250 52 + . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX DNA_TcMar-Tc1 111229 111465 56 + . . . . . -1 -1 -1 . . . scaffold6 WUBlastX LINE_CR1 447828 447968 20 - . . . . . -1 -1 -1 . . . scaffold772 WUBlastX DNA_En-Spm 203231 204481 26 - . . . . . -1 -1 -1 . . . C22996 WUBlastX LTR_Gypsy 580 1440 104 - . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 644244 645092 116 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 364562 364975 59 - . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_RTE-X 272404 272817 77 - . . scaffold786 GLEAN mRNA 267472 276923 0.985899 + . ID=CGI_10013705; scaffold1671 WUBlastX LTR_Pao 109504 109608 26 + . . . . . -1 -1 -1 . . . scaffold635 WUBlastX LTR_Gypsy-Cigr 44492 45190 127 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_CR1-L2 553506 554069 95 + . . . . . -1 -1 -1 . . . scaffold144 WUBlastX LINE_CR1-L2 462860 463339 123 - . . . . . -1 -1 -1 . . . scaffold635 WUBlastX LTR_Gypsy 116592 116681 22 - . . scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; C25486 WUBlastX LTR_Gypsy 1712 2242 133 - . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX LINE_R2-Hero 265933 266412 35 - . . scaffold43574 GLEAN mRNA 264140 268252 0.775763 + . ID=CGI_10010886; scaffold43574 WUBlastX LINE_R2-Hero 266375 266755 131 - . . scaffold43574 GLEAN mRNA 264140 268252 0.775763 + . ID=CGI_10010886; scaffold230 WUBlastX DNA_hAT-Tip100 129539 129691 29 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold115 WUBlastX DNA_IS4EU 325139 325243 50 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 323963 324166 63 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_IS4EU 324320 324391 42 - . . . . . -1 -1 -1 . . . scaffold42566 WUBlastX LINE_RTE-BovB 39464 39604 20 - . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LINE_L1-Tx1 44491 44592 40 - . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LTR_Gypsy 60473 62617 687 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX RC_Helitron 693481 694107 207 + . . scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold33840 WUBlastX LINE_RTE-X 11822 12571 93 + . . . . . -1 -1 -1 . . . scaffold43562 WUBlastX LINE_R2-Hero 62157 62963 115 + . . scaffold43562 GLEAN mRNA 921 63783 0.694747 + . ID=CGI_10011029; scaffold43562 WUBlastX LINE_R2-Hero 63122 63223 42 + . . scaffold43562 GLEAN mRNA 921 63783 0.694747 + . ID=CGI_10011029; scaffold1532 WUBlastX DNA_Harbinger 178189 178482 121 - . . . . . -1 -1 -1 . . . scaffold35238 WUBlastX LINE_L1-Tx1 1901 2047 30 - . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX DNA_Kolobok 17573 17899 93 - . . scaffold1789 GLEAN mRNA 10291 23583 0.974284 + . ID=CGI_10003175; scaffold61 WUBlastX LINE_RTE-X 91091 91549 30 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold1101 WUBlastX DNA_TcMar-Tc1 59065 59409 153 - . . . . . -1 -1 -1 . . . scaffold1489 WUBlastX LTR_Gypsy 569 1291 129 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LTR_Gypsy-Cigr 155672 156277 151 + . . . . . -1 -1 -1 . . . C35760 WUBlastX LTR_Gypsy 26922 27404 125 - . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_Penelope 105072 105671 94 - . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 1103361 1103792 69 - . . scaffold156 GLEAN mRNA 1094153 1105194 0.982183 - . ID=CGI_10026543; scaffold35138 WUBlastX LTR_Gypsy 9059 9946 125 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 638544 639431 125 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LTR_Gypsy 298495 299382 125 - . . . . . -1 -1 -1 . . . scaffold42128 WUBlastX LINE_L2 114954 115412 133 - . . scaffold42128 GLEAN mRNA 104720 121214 0.954298 - . ID=CGI_10006199; scaffold1217 WUBlastX LTR_Ngaro 47364 47771 91 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX DNA_Kolobok-IS4 94076 94516 120 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX DNA_IS4EU 161048 161263 38 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Marin 126154 126405 168 + . . scaffold48 GLEAN mRNA 124474 140752 0.924637 + . ID=CGI_10023885; scaffold1900 WUBlastX LTR_Ngaro 380459 380599 37 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 800842 801816 589 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_L1-Tx1 801816 802721 529 + . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_L1-Tx1 217393 218520 73 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 857271 857582 149 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX DNA_hAT-Tip100 34991 35377 68 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 8132 8359 113 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 8434 8643 79 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Ngaro 933102 933257 52 - . . . . . -1 -1 -1 . . . scaffold42450 WUBlastX DNA_TcMar-Tc1 58697 59008 171 + . . . . . -1 -1 -1 . . . C32056 WUBlastX LINE_L1-Tx1 5757 5960 37 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 1103526 1103792 80 - . . scaffold156 GLEAN mRNA 1094153 1105194 0.982183 - . ID=CGI_10026543; scaffold1899 WUBlastX LINE_R2-Hero 213755 213895 51 + . . . . . -1 -1 -1 . . . scaffold1899 WUBlastX LINE_R2-Hero 214514 214720 90 + . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LTR_Gypsy 23930 24220 197 + . . scaffold35994 GLEAN mRNA 21382 24601 0.722015 + . ID=CGI_10001675; scaffold1322 WUBlastX LTR_Pao 408242 408406 46 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold156 WUBlastX LTR_Gypsy 26561 26725 95 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LTR_Gypsy 348131 348448 211 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LTR_Gypsy 25965 26348 40 + . . . . . -1 -1 -1 . . . scaffold1553 WUBlastX LINE_RTE-X 62351 62458 35 - . . . . . -1 -1 -1 . . . scaffold1855 WUBlastX LINE_RTE-X 201065 201490 181 + . . scaffold1855 GLEAN mRNA 188156 207855 0.999324 - . ID=CGI_10008876; scaffold501 WUBlastX LTR_Gypsy-Cigr 1302096 1303703 1173 + . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LTR_DIRS 68763 68885 40 + . . . . . -1 -1 -1 . . . scaffold40822 WUBlastX LTR_DIRS 69187 69723 132 + . . . . . -1 -1 -1 . . . scaffold1160 WUBlastX LTR_DIRS 420017 420595 108 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1210458 1211096 131 - . . . . . -1 -1 -1 . . . scaffold41852 WUBlastX DNA_Harbinger 110401 110580 50 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 498036 499706 688 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Pao 314682 314879 36 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX DNA_Kolobok-IS4 1009753 1010415 147 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Harbinger 89948 90430 158 - . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX DNA_Harbinger 90807 90944 50 - . . . . . -1 -1 -1 . . . C36014 WUBlastX DNA_TcMar-Tc2 27762 28031 141 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LINE_L2 45014 47635 1152 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LINE_L2 47587 48237 249 + . . . . . -1 -1 -1 . . . scaffold36170 WUBlastX LTR_Gypsy 16258 18084 1420 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX LINE_RTE-X 567792 570269 1515 + . . . . . -1 -1 -1 . . . scaffold1498 WUBlastX LTR_Ngaro 23897 24376 207 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 42788 43015 106 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_L1-Tx1 128371 128520 42 - . . . . . -1 -1 -1 . . . scaffold707 WUBlastX DNA_Harbinger 47981 48094 61 - . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold247 WUBlastX LTR_Gypsy 501483 501683 61 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX DNA_Maverick 213798 214676 198 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LTR_Gypsy 83108 84490 1048 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 667659 669800 1002 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 330696 331520 483 + . . scaffold1307 GLEAN mRNA 323239 332767 0.901731 + . ID=CGI_10023754; scaffold1307 WUBlastX LTR_Gypsy 331562 332701 1111 + . . scaffold1307 GLEAN mRNA 323239 332767 0.901731 + . ID=CGI_10023754; scaffold419 WUBlastX LTR_Gypsy 667375 667713 327 + . . . . . -1 -1 -1 . . . C27552 WUBlastX DNA_hAT-hATw 4094 4786 205 - . . . . . -1 -1 -1 . . . C32028 WUBlastX LINE_L1 9893 10678 176 + . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_RTE-X 94881 95213 55 - . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_RTE-X 96127 96399 87 - . . . . . -1 -1 -1 . . . scaffold40290 WUBlastX LINE_RTE-X 71238 71480 71 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Pao 603515 603703 88 + . . . . . -1 -1 -1 . . . scaffold40560 WUBlastX LINE_L1 35973 36020 24 - . . . . . -1 -1 -1 . . . scaffold1597 WUBlastX DNA_hAT-Tip100 3111 3440 151 - . . scaffold1597 GLEAN mRNA 296 3638 1 - . ID=CGI_10011762; scaffold544 WUBlastX LTR_DIRS 564449 564691 117 + . . scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold42656 WUBlastX DNA_Crypton 147285 147845 201 + . . . . . -1 -1 -1 . . . scaffold36202 WUBlastX LTR_Gypsy 28020 28085 46 - . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 811103 811708 157 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_RTE-X 811846 812067 43 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LINE_RTE-BovB 164689 164826 56 - . . . . . -1 -1 -1 . . . scaffold933 WUBlastX LTR_Gypsy 410920 411633 259 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LTR_Gypsy 490375 490632 151 - . . scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold613 WUBlastX LTR_Gypsy 17142 17930 254 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1 42941 43144 32 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_Penelope 88761 88964 70 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-X 83618 83881 170 - . . . . . -1 -1 -1 . . . scaffold43076 WUBlastX LINE_RTE-X 84873 85184 116 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_DIRS 190618 191235 198 - . . . . . -1 -1 -1 . . . scaffold597 WUBlastX LINE_RTE-X 35079 35504 20 - . . scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold290 WUBlastX LTR_Ngaro 512694 512963 149 + . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_RTE-X 17885 18472 222 + . . . . . -1 -1 -1 . . . scaffold248 WUBlastX LINE_RTE-X 137500 137799 53 - . . . . . -1 -1 -1 . . . scaffold301 WUBlastX DNA_Sola 950913 951134 24 - . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold101 WUBlastX LINE_L1-Tx1 671444 672070 260 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LTR_Gypsy 69939 70631 306 + . . . . . -1 -1 -1 . . . scaffold834 WUBlastX LINE_CR1 46878 48356 208 - . . . . . -1 -1 -1 . . . C28030 WUBlastX LINE_L1-Tx1 1259 1489 44 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Ngaro 85227 86069 263 + . . . . . -1 -1 -1 . . . scaffold35124 WUBlastX LINE_RTE-BovB 3898 4245 203 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX LINE_RTE-X 285520 285954 130 + . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_L2 185211 186080 259 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold1484 WUBlastX LINE_RTE-X 252456 252842 66 + . . . . . -1 -1 -1 . . . C30324 WUBlastX LINE_L1 4288 5193 95 - . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_L2 277190 277435 21 - . . . . . -1 -1 -1 . . . scaffold364 WUBlastX LINE_RTE-X 708627 708749 67 + . . . . . -1 -1 -1 . . . scaffold38510 WUBlastX DNA_Sola 30058 30306 171 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 31742 32158 120 + . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold847 WUBlastX LINE_L2 520355 521947 247 + . . scaffold847 GLEAN mRNA 512783 523785 0.999676 + . ID=CGI_10022281; C33776 WUBlastX LTR_Gypsy 28 795 404 + . . . . . -1 -1 -1 . . . scaffold42402 WUBlastX LINE_L1 12386 12514 33 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX DNA_IS4EU 39873 40235 124 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 359078 359209 25 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_RTE-X 359629 360093 101 + . . . . . -1 -1 -1 . . . scaffold1386 WUBlastX LINE_L2 115601 116128 352 + . . . . . -1 -1 -1 . . . scaffold34 WUBlastX LINE_L2 168180 168926 344 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX LTR_Ngaro 178821 179534 328 + . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LTR_Gypsy 566828 568198 388 + . . scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold535 WUBlastX LINE_L2 565703 565780 45 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_L2 566232 566645 131 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_L2 566627 566806 49 + . . scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold1009 WUBlastX LTR_Gypsy 1306379 1307359 348 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LINE_RTE-X 45829 46371 292 - . . . . . -1 -1 -1 . . . scaffold1244 WUBlastX LINE_Penelope 572029 572175 76 - . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold42770 WUBlastX LINE_L1-Tx1 87936 88331 182 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 88523 88828 152 + . . . . . -1 -1 -1 . . . C35786 WUBlastX LINE_L1-Tx1 14149 14535 38 - . . . . . -1 -1 -1 . . . C35786 WUBlastX LINE_L1-Tx1 14603 14740 26 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_DIRS 741272 741871 266 + . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LTR_DIRS 741849 742175 149 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_CR1 951 1256 91 + . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 223030 224421 112 - . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold833 WUBlastX DNA_Academ 463064 463369 178 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX DNA_Academ 463468 463722 77 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 463773 464843 264 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold40134 WUBlastX DNA_Maverick 50113 50799 316 - . . scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold107 WUBlastX LINE_R2-Hero 398025 398102 21 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_Penelope 562013 563170 356 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 993951 994046 22 + . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_DIRS 46016 46546 276 + . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_DIRS 46628 47848 176 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 600853 601197 179 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-BovB 310208 311071 435 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy-Cigr 87860 88009 101 - . . . . . -1 -1 -1 . . . scaffold38152 WUBlastX LTR_Gypsy 47932 49890 508 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 733742 734347 235 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX DNA_PiggyBac 173841 175463 765 + . . scaffold1154 GLEAN mRNA 126524 188335 0.933838 - . ID=CGI_10026155; scaffold43076 WUBlastX DNA_Sola 150777 152204 692 + . . . . . -1 -1 -1 . . . scaffold963 WUBlastX LINE_RTE-X 294151 295455 636 + . . . . . -1 -1 -1 . . . scaffold576 WUBlastX LINE_L2 451249 451509 153 + . . . . . -1 -1 -1 . . . scaffold348 WUBlastX DNA_Maverick 12949 14427 874 + . . . . . -1 -1 -1 . . . scaffold1549 WUBlastX LINE_RTE-X 55156 57480 722 - . . . . . -1 -1 -1 . . . scaffold930 WUBlastX LINE_CR1-L2 145473 145694 62 + . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LINE_CR1-L2 25495 25575 26 + . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX LINE_CR1-L2 25896 26027 46 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_CR1-L2 1171222 1171365 61 - . . scaffold198 GLEAN mRNA 1155548 1172013 0.535042 + . ID=CGI_10027850; scaffold198 WUBlastX LINE_CR1-L2 1171222 1171365 61 - . . scaffold198 GLEAN mRNA 1169314 1180690 0.99935 - . ID=CGI_10027851; scaffold492 WUBlastX LINE_CR1-L2 162591 162881 50 + . . . . . -1 -1 -1 . . . scaffold43634 WUBlastX LINE_L2 199812 200021 73 + . . . . . -1 -1 -1 . . . scaffold189 WUBlastX LINE_CR1-L2 540484 540789 39 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_CR1 577023 577403 41 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_L2 317298 317348 27 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_L2 650489 650689 30 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LINE_L2 358831 359100 76 - . . . . . -1 -1 -1 . . . scaffold1690 WUBlastX LINE_L2 2382 2561 33 - . . . . . -1 -1 -1 . . . scaffold1695 WUBlastX LINE_CR1 14146 14466 43 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L2 1022420 1022944 24 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_L2 15453 15566 27 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX LINE_L2 558309 558440 53 - . . . . . -1 -1 -1 . . . scaffold540 WUBlastX LINE_L2 212354 212524 59 - . . . . . -1 -1 -1 . . . scaffold595 WUBlastX LINE_L2 63922 64011 21 + . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Pao 129823 130056 74 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 487944 488369 32 + . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LTR_Pao 207024 207176 82 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX DNA_Chapaev 21262 21576 43 + . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy-Cigr 166546 166821 65 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold489 WUBlastX LTR_Gypsy 46918 47037 44 + . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_Copia 910301 910573 51 - . . scaffold1179 GLEAN mRNA 910112 912193 0.727725 - . ID=CGI_10027392; scaffold43956 WUBlastX LTR_Copia 24590 24751 30 + . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX LTR_Copia 260887 261159 44 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold508 WUBlastX LTR_Copia 16243 16338 20 - . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold43302 WUBlastX LTR_Copia 201529 201840 54 + . . scaffold43302 GLEAN mRNA 200845 202269 0.838494 + . ID=CGI_10009769; scaffold825 WUBlastX LTR_Copia 237174 237311 32 + . . scaffold825 GLEAN mRNA 233940 240386 0.881408 + . ID=CGI_10012713; scaffold1132 WUBlastX DNA_Academ 766348 766437 25 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX DNA_Academ 766757 766960 27 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_hAT-Tip100 394018 394299 41 - . . scaffold546 GLEAN mRNA 387340 395941 0.945058 - . ID=CGI_10021003; scaffold43150 WUBlastX LINE_L1 107090 107659 48 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; C26018 WUBlastX LINE_L1 1845 2414 48 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX DNA_hAT 22351 22458 53 + . . scaffold1900 GLEAN mRNA 17727 24416 0.723538 + . ID=CGI_10017323; scaffold1900 WUBlastX DNA_hAT 22610 22735 49 + . . scaffold1900 GLEAN mRNA 17727 24416 0.723538 + . ID=CGI_10017323; scaffold107 WUBlastX LTR_Pao 551668 552039 29 - . . scaffold107 GLEAN mRNA 542463 558772 0.592352 + . ID=CGI_10025060; scaffold1484 WUBlastX DNA_Merlin 336325 336726 33 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LINE_CR1 212316 212369 30 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_CR1 393889 393921 22 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_L2 666423 666662 50 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_CR1 52311 52739 23 + . . . . . -1 -1 -1 . . . scaffold395 WUBlastX LINE_CR1 229887 230375 31 - . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LTR_Gypsy-Cigr 102277 102654 72 + . . scaffold41210 GLEAN mRNA 102622 102807 0.732703 + . ID=CGI_10004806; scaffold1706 WUBlastX LTR_Gypsy 77700 77828 20 + . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LTR_Gypsy 160933 161355 70 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LTR_Gypsy 699818 700087 66 - . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LTR_Gypsy 187482 187673 91 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 69145 69468 23 - . . . . . -1 -1 -1 . . . scaffold43182 WUBlastX LTR_Gypsy 129552 129878 40 + . . . . . -1 -1 -1 . . . scaffold786 WUBlastX DNA_En-Spm 204213 204356 64 - . . . . . -1 -1 -1 . . . scaffold1754 WUBlastX LINE_L2 159335 159571 48 - . . . . . -1 -1 -1 . . . scaffold33412 WUBlastX LINE_L2 6723 6938 54 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_Crypton 27045 27257 55 + . . . . . -1 -1 -1 . . . scaffold36886 WUBlastX LINE_L2 15300 15449 21 + . . . . . -1 -1 -1 . . . scaffold351 WUBlastX LTR_Ngaro 401373 401567 70 + . . . . . -1 -1 -1 . . . scaffold1016 WUBlastX LTR_Ngaro 304474 304734 60 - . . . . . -1 -1 -1 . . . scaffold1031 WUBlastX LTR_DIRS 206313 206414 39 - . . scaffold1031 GLEAN mRNA 202896 208011 0.999658 - . ID=CGI_10019698; scaffold1031 WUBlastX LTR_DIRS 206401 206553 24 - . . scaffold1031 GLEAN mRNA 202896 208011 0.999658 - . ID=CGI_10019698; scaffold275 WUBlastX LTR_DIRS 130121 130240 57 - . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LTR_Ngaro 1022887 1023069 30 - . . scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold128 WUBlastX LTR_Copia 283541 283651 21 + . . scaffold128 GLEAN mRNA 283454 283705 0.516047 - . ID=CGI_10021516; scaffold39134 WUBlastX LTR_Gypsy 45976 46020 22 + . . scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold801 WUBlastX LTR_Gypsy 841860 842198 41 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LTR_Gypsy 331301 331483 65 - . . scaffold1036 GLEAN mRNA 322076 338878 0.999998 + . ID=CGI_10019961; scaffold107 WUBlastX LTR_Gypsy 748326 748460 34 - . . . . . -1 -1 -1 . . . scaffold43344 WUBlastX LTR_Gypsy 230395 230637 63 + . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LTR_Gypsy 6168 6254 22 + . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LTR_Gypsy 7035 7193 68 + . . . . . -1 -1 -1 . . . scaffold41534 WUBlastX DNA_Harbinger 107515 107682 40 - . . . . . -1 -1 -1 . . . C30820 WUBlastX DNA_Harbinger 1074 1178 41 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Harbinger 508286 508399 34 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Harbinger 521305 521421 32 - . . scaffold880 GLEAN mRNA 520749 522391 1 - . ID=CGI_10022198; scaffold880 WUBlastX DNA_Harbinger 522396 522572 29 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 123310 123420 43 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 123420 123608 31 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 123914 124006 28 - . . . . . -1 -1 -1 . . . scaffold19 WUBlastX LTR_Gypsy 140706 140957 26 - . . scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; C22430 WUBlastX LTR_Gypsy 1468 1734 29 + . . . . . -1 -1 -1 . . . C30872 WUBlastX LTR_Gypsy 990 1610 57 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 240693 240812 62 + . . . . . -1 -1 -1 . . . scaffold954 WUBlastX LTR_Gypsy 172547 172660 20 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX RC_Helitron 315413 315553 24 - . . scaffold140 GLEAN mRNA 314931 325697 0.976053 - . ID=CGI_10020134; scaffold1199 WUBlastX RC_Helitron 47908 48087 29 - . . scaffold1199 GLEAN mRNA 46410 49371 0.592263 - . ID=CGI_10005923; scaffold42784 WUBlastX DNA_hAT-hATw 54848 55336 47 - . . scaffold42784 GLEAN mRNA 54212 62212 0.526003 + . ID=CGI_10007732; scaffold502 WUBlastX DNA_Harbinger 214985 215077 37 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX DNA_hAT-Hobo 440465 440617 71 - . . scaffold780 GLEAN mRNA 437873 449595 0.921743 + . ID=CGI_10024736; scaffold43686 WUBlastX LTR_ERV1 168879 169130 71 - . . . . . -1 -1 -1 . . . scaffold35726 WUBlastX DNA_TcMar-Marin 23193 23411 44 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_I 1012266 1012313 21 - . . scaffold204 GLEAN mRNA 981338 1035223 0.34759 - . ID=CGI_10026142; scaffold43702 WUBlastX LINE_I 3255 3329 49 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_IS4EU 3227 3325 23 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 3963 4175 24 + . . scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold487 WUBlastX DNA_IS4EU 475033 475605 65 + . . . . . -1 -1 -1 . . . scaffold1377 WUBlastX DNA_IS4EU 183939 184094 33 + . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold126 WUBlastX DNA_Kolobok 418479 418583 38 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX DNA_Kolobok 418743 419000 46 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LINE_Penelope 188357 188800 22 - . . scaffold1647 GLEAN mRNA 187635 201366 0.525082 + . ID=CGI_10008148; scaffold1020 WUBlastX DNA_P 11334 11606 48 + . . scaffold1020 GLEAN mRNA 10748 11618 1 + . ID=CGI_10012847; scaffold71 WUBlastX DNA_P 406008 406241 41 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX DNA_P 778454 778639 23 + . . scaffold58 GLEAN mRNA 776038 784085 0.259197 - . ID=CGI_10023164; scaffold1492 WUBlastX LINE_Penelope 302627 302827 20 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_Penelope 128021 128191 38 - . . scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold1780 WUBlastX LINE_Penelope 322343 322492 62 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_Penelope 762740 763114 32 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_Penelope 482965 483192 73 - . . scaffold626 GLEAN mRNA 474315 488242 0.98805 - . ID=CGI_10020000; scaffold352 WUBlastX LINE_Penelope 116361 116762 30 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_MuDR 53049 53210 66 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_MuDR 183284 183460 62 + . . . . . -1 -1 -1 . . . scaffold33050 WUBlastX DNA_NOF? 4569 4748 39 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX DNA_NOF 870479 870733 67 + . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_NOF 464573 464665 37 - . . . . . -1 -1 -1 . . . scaffold1601 WUBlastX LTR_ERV1 8448 8909 55 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_L1 308590 308775 50 + . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX LTR_ERVK 149440 149556 21 + . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX DNA_TcMar-Fot1 127013 127108 20 + . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX DNA_TcMar-Fot1 127313 127426 51 + . . scaffold1096 GLEAN mRNA 127172 128535 0.984969 + . ID=CGI_10006456; scaffold911 WUBlastX DNA_TcMar-Tc1 133893 134078 30 + . . . . . -1 -1 -1 . . . scaffold42948 WUBlastX DNA_TcMar-Marin 195581 195661 27 + . . scaffold42948 GLEAN mRNA 186071 196987 0.150089 + . ID=CGI_10008236; scaffold1737 WUBlastX DNA_TcMar-Tc1 610 984 49 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX LINE_L1-Tx1 189595 189804 38 + . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_L1 128368 128637 42 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L1 879401 879613 52 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L1 834611 834925 35 - . . . . . -1 -1 -1 . . . scaffold487 WUBlastX LINE_L1 9180 9482 38 - . . . . . -1 -1 -1 . . . scaffold878 WUBlastX LINE_L1 42871 43101 70 - . . . . . -1 -1 -1 . . . scaffold1329 WUBlastX LINE_L1 35300 35410 23 - . . . . . -1 -1 -1 . . . scaffold729 WUBlastX LINE_L1-Tx1 22831 23187 23 - . . . . . -1 -1 -1 . . . scaffold35926 WUBlastX LINE_L1 24591 24629 23 - . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_L1 140121 140288 52 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_L1 647870 647947 39 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold560 WUBlastX LINE_L1-Tx1 30208 30471 24 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_L1-Tx1 1197613 1197876 59 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_Kolobok-Hyd 395227 395301 42 + . . scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold1865 WUBlastX LINE_L1-Tx1 236945 237124 31 - . . scaffold1865 GLEAN mRNA 222891 259212 0.998765 - . ID=CGI_10013544; scaffold1740 WUBlastX LINE_L1-Tx1 236781 237002 47 - . . . . . -1 -1 -1 . . . scaffold294 WUBlastX LINE_L1-Tx1 207691 207789 54 - . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX LINE_L1-Tx1 36430 36519 50 - . . . . . -1 -1 -1 . . . scaffold57 WUBlastX LINE_RTE-BovB 445911 446015 54 - . . scaffold57 GLEAN mRNA 444980 452251 1 + . ID=CGI_10020561; scaffold42674 WUBlastX LINE_RTE-BovB 167498 167698 45 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_Penelope 134415 134600 39 - . . scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold576 WUBlastX LINE_Penelope 515366 515785 35 + . . . . . -1 -1 -1 . . . scaffold15 WUBlastX LINE_RTE-X 117 188 29 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1241131 1241241 48 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_RTE-X 789698 789865 29 + . . . . . -1 -1 -1 . . . scaffold43200 WUBlastX LINE_RTE-X 134740 135051 34 - . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-BovB 308610 308744 30 - . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LINE_RTE-BovB 226849 227076 61 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-BovB 691818 691952 32 + . . scaffold70 GLEAN mRNA 689757 708725 0.811083 - . ID=CGI_10024788; scaffold1024 WUBlastX LINE_RTE-X 863990 864226 26 + . . . . . -1 -1 -1 . . . C29974 WUBlastX LINE_RTE-X 6238 6435 64 + . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LINE_RTE-X 447371 447649 48 + . . . . . -1 -1 -1 . . . scaffold549 WUBlastX LINE_RTE-X 8416 8481 39 - . . scaffold549 GLEAN mRNA 463 9456 0.999993 + . ID=CGI_10004100; scaffold549 WUBlastX LINE_RTE-X 8536 8565 29 - . . scaffold549 GLEAN mRNA 463 9456 0.999993 + . ID=CGI_10004100; scaffold43878 WUBlastX LINE_RTE-X 92887 93216 29 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_RTE-X 665176 665424 24 - . . . . . -1 -1 -1 . . . scaffold87 WUBlastX LINE_RTE-X 47152 47571 20 + . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX LINE_RTE-X 39330 39719 28 - . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_RTE-X 388252 388431 75 - . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX LINE_RTE-X 235494 235733 45 - . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 113163 113396 40 - . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 113648 113767 38 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LINE_RTE-X 212856 212945 45 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Gypsy 1441427 1441843 41 + . . . . . -1 -1 -1 . . . scaffold780 WUBlastX DNA_Maverick 465103 465387 32 - . . scaffold780 GLEAN mRNA 451059 466814 0.999651 - . ID=CGI_10024737; scaffold39642 WUBlastX DNA_Maverick 3354 3536 24 + . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX DNA_Maverick 37712 38035 66 + . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX DNA_Maverick 326289 326441 27 + . . scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold41242 WUBlastX LTR_ERV-Lenti 30209 30325 57 + . . scaffold41242 GLEAN mRNA 30075 30290 0.999372 + . ID=CGI_10004882; scaffold39364 WUBlastX LINE_R2 4940 5059 22 + . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_Dong-R4 870640 870870 51 - . . scaffold1219 GLEAN mRNA 868848 874682 0.999351 + . ID=CGI_10024304; scaffold619 WUBlastX LTR_Gypsy 178614 178925 42 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LINE_Rex-Babar 379052 379204 31 + . . . . . -1 -1 -1 . . . scaffold1584 WUBlastX LINE_RTE-BovB 46765 47202 22 - . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 1139494 1139739 35 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold218 WUBlastX LINE_RTE-BovB 44914 45210 37 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_RTE-X 130932 131234 30 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX LINE_RTE-X 381582 381947 34 - . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_RTE-X 452603 452656 26 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX DNA_TcMar-Marin 35801 35941 35 - . . . . . -1 -1 -1 . . . scaffold1093 WUBlastX DNA_Sola 424848 425048 59 + . . scaffold1093 GLEAN mRNA 421292 452469 0.981582 + . ID=CGI_10019808; scaffold42306 WUBlastX LTR_DIRS 123483 123716 69 - . . scaffold42306 GLEAN mRNA 115556 155578 0.855145 + . ID=CGI_10006611; scaffold459 WUBlastX DNA_TcMar-Marin 157606 157785 47 - . . scaffold459 GLEAN mRNA 142513 160346 0.813912 - . ID=CGI_10018171; scaffold613 WUBlastX LTR_Gypsy 3407 3523 70 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_RTE-X 1456940 1457023 23 + . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_RTE-X 220523 220732 34 - . . scaffold388 GLEAN mRNA 216874 221663 0.662264 - . ID=CGI_10020466; scaffold388 WUBlastX LINE_RTE-X 220523 220732 34 - . . scaffold388 GLEAN mRNA 211826 226750 0.996237 + . ID=CGI_10020465; scaffold343 WUBlastX LINE_RTE-X 365586 365768 30 + . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX LTR_DIRS 16326 16535 55 + . . . . . -1 -1 -1 . . . scaffold499 WUBlastX LTR_Ngaro 198011 198388 58 + . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_L1-Tx1 61154 61378 40 - . . . . . -1 -1 -1 . . . scaffold42124 WUBlastX LINE_L1-Tx1 74474 74626 26 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_DRE 386862 386933 23 - . . . . . -1 -1 -1 . . . scaffold1574 WUBlastX LINE_DRE 127171 127473 49 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_TcMar-Tc1 142842 142961 51 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258800 258958 24 - . . . . . -1 -1 -1 . . . scaffold579 WUBlastX DNA_TcMar-Tc1 207172 207456 67 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold38978 WUBlastX DNA_TcMar-Tc1 54119 54223 38 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-Tc1 339821 340735 47 + . . . . . -1 -1 -1 . . . C28456 WUBlastX DNA_TcMar-Tc1 2161 2322 54 - . . . . . -1 -1 -1 . . . scaffold399 WUBlastX LINE_L1-Tx1 189461 189667 51 - . . . . . -1 -1 -1 . . . scaffold1156 WUBlastX LINE_L1-Tx1 4173 4364 31 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_L1-Tx1 113462 113668 51 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1-Tx1 112983 113198 54 + . . . . . -1 -1 -1 . . . scaffold1585 WUBlastX LINE_L1-Tx1 173740 173865 36 - . . scaffold1585 GLEAN mRNA 167748 175810 0.997972 + . ID=CGI_10012594; scaffold1885 WUBlastX DNA_PiggyBac 205418 205879 48 - . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 183572 183697 30 + . . . . . -1 -1 -1 . . . scaffold810 WUBlastX LTR_Gypsy 65247 65528 68 + . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LTR_Gypsy 214788 214856 20 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LINE_CR1 296061 296426 25 + . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_CR1 52988 53134 72 + . . . . . -1 -1 -1 . . . scaffold929 WUBlastX LINE_CR1-L2 124656 124916 69 + . . scaffold929 GLEAN mRNA 116400 138361 0.987262 + . ID=CGI_10006345; scaffold236 WUBlastX LINE_CR1-L2 319366 319620 84 - . . . . . -1 -1 -1 . . . scaffold625 WUBlastX DNA_En-Spm 521573 521776 53 + . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_L2 706222 706566 33 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX DNA_Kolobok 215465 215569 22 + . . . . . -1 -1 -1 . . . scaffold43726 WUBlastX DNA_IS4EU 70671 70808 55 + . . . . . -1 -1 -1 . . . scaffold1831 WUBlastX DNA_Harbinger 25147 25302 68 + . . scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; C23682 WUBlastX LINE_L1 1382 1573 28 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1 443871 444224 36 + . . . . . -1 -1 -1 . . . scaffold1863 WUBlastX LINE_L1-Tx1 171557 171844 64 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy-Cigr 389841 389999 70 - . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LINE_CR1 3366 3458 20 + . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 429478 429939 34 - . . . . . -1 -1 -1 . . . scaffold1123 WUBlastX LTR_Gypsy 429965 430030 33 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LTR_Gypsy 114204 114335 22 + . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX DNA_Harbinger 8617 8811 52 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LTR_Gypsy 146389 146814 69 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX DNA_IS4EU 38690 38866 84 - . . . . . -1 -1 -1 . . . scaffold1072 WUBlastX LINE_I 16248 16877 45 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_L1 485766 486173 42 + . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold363 WUBlastX LINE_RTE-X 38366 38800 28 + . . . . . -1 -1 -1 . . . scaffold38764 WUBlastX LINE_RTE-X 46386 46712 36 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-BovB 379756 379911 45 - . . . . . -1 -1 -1 . . . scaffold1721 WUBlastX LINE_RTE-X 32541 32765 79 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-X 864062 864226 84 + . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LINE_RTE-BovB 329100 329300 88 - . . scaffold304 GLEAN mRNA 327782 339627 0.999019 - . ID=CGI_10016567; scaffold150 WUBlastX LINE_RTE-X 501773 502036 45 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LINE_L1-Tx1 221937 222191 28 + . . . . . -1 -1 -1 . . . scaffold416 WUBlastX DNA_TcMar-Tc1 348865 348993 34 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_CR1-L2 357946 358467 73 - . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX LTR_Ngaro 248 505 111 + . . . . . -1 -1 -1 . . . scaffold381 WUBlastX LTR_DIRS 303974 304078 36 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Ngaro 554647 555162 61 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_Kolobok-IS4 188639 188761 27 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX DNA_Kolobok-IS4 189037 189108 33 + . . . . . -1 -1 -1 . . . scaffold722 WUBlastX DNA_TcMar-Marin 242506 242664 73 - . . scaffold722 GLEAN mRNA 213107 274814 0.920529 - . ID=CGI_10012201; scaffold43 WUBlastX LINE_RTE-X 574549 574812 85 + . . scaffold43 GLEAN mRNA 558255 582492 0.807709 - . ID=CGI_10021361; scaffold43008 WUBlastX LINE_RTE-X 49261 49521 71 - . . . . . -1 -1 -1 . . . scaffold41766 WUBlastX LINE_RTE-X 114093 114395 58 + . . . . . -1 -1 -1 . . . scaffold450 WUBlastX LINE_RTE-X 233149 233382 63 - . . . . . -1 -1 -1 . . . scaffold35272 WUBlastX LINE_RTE-X 7605 7850 41 - . . . . . -1 -1 -1 . . . scaffold36926 WUBlastX LINE_RTE-X 22319 22702 85 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_CR1-L2 66749 66925 21 + . . scaffold448 GLEAN mRNA 53576 85492 0.998765 + . ID=CGI_10024929; scaffold286 WUBlastX LTR_Pao 288247 288477 124 - . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold42530 WUBlastX LTR_Pao 36043 36483 120 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_L2 15355 16017 59 + . . . . . -1 -1 -1 . . . scaffold1624 WUBlastX DNA_Crypton 48467 48628 25 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Gypsy-Cigr 378535 378786 108 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX DNA_IS4EU 154787 154933 40 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1-Tx1 78161 78493 73 + . . . . . -1 -1 -1 . . . scaffold724 WUBlastX LINE_RTE-BovB 58455 58547 24 - . . . . . -1 -1 -1 . . . scaffold724 WUBlastX LINE_RTE-BovB 58782 59174 40 - . . . . . -1 -1 -1 . . . scaffold724 WUBlastX LINE_RTE-BovB 59265 59408 30 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LINE_L2 5861 6370 35 + . . . . . -1 -1 -1 . . . scaffold18 WUBlastX LINE_L2 28677 29012 92 + . . . . . -1 -1 -1 . . . scaffold1738 WUBlastX LTR_Gypsy 5130 5606 116 + . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX DNA_En-Spm 51125 52084 24 - . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold854 WUBlastX LTR_DIRS 14768 15067 125 + . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_IS4EU 850489 850674 22 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_IS4EU 31233 31550 33 + . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LTR_Gypsy 191570 191632 26 - . . . . . -1 -1 -1 . . . scaffold36190 WUBlastX LINE_L1 13717 14505 87 + . . . . . -1 -1 -1 . . . scaffold1535 WUBlastX LINE_L1 14272 14856 69 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1-Tx1 258986 259156 35 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1-L2 584202 584489 21 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_Harbinger 319512 319862 73 + . . scaffold43920 GLEAN mRNA 309875 322859 0.642175 + . ID=CGI_10013999; scaffold39358 WUBlastX DNA_IS4EU 38654 38842 34 - . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX DNA_IS4EU 39778 39885 44 - . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_RTE-X 31401 31517 52 - . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold461 WUBlastX DNA_Maverick 546400 546585 124 - . . . . . -1 -1 -1 . . . scaffold1460 WUBlastX LINE_L2 5289 5639 104 + . . . . . -1 -1 -1 . . . scaffold1458 WUBlastX LTR_Ngaro 3717 4139 74 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Ngaro 232048 232251 79 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Tc1 267935 268141 45 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_PiggyBac 517369 517671 31 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_PiggyBac 8276 8785 121 - . . . . . -1 -1 -1 . . . scaffold240 WUBlastX DNA_Maverick 120209 120304 20 - . . . . . -1 -1 -1 . . . scaffold610 WUBlastX LINE_L2 239091 239360 132 - . . scaffold610 GLEAN mRNA 239004 244016 1 + . ID=CGI_10021102; scaffold394 WUBlastX DNA_Kolobok 94723 96027 71 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX LTR_Ngaro 340133 340342 59 - . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LTR_Ngaro 506878 507372 76 - . . . . . -1 -1 -1 . . . scaffold1700 WUBlastX DNA_Maverick 53871 54527 87 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Helitron 46187 46294 22 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold580 WUBlastX LINE_Penelope 3469 3804 127 + . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-X 167370 169031 703 + . . scaffold689 GLEAN mRNA 162763 181677 0.999 - . ID=CGI_10014826; scaffold733 WUBlastX LINE_CR1 129086 129580 64 - . . . . . -1 -1 -1 . . . scaffold1800 WUBlastX LINE_CR1 262239 262388 52 - . . scaffold1800 GLEAN mRNA 251153 263258 0.999949 - . ID=CGI_10016404; scaffold1754 WUBlastX LTR_Gypsy 208173 208769 133 - . . . . . -1 -1 -1 . . . scaffold41214 WUBlastX LINE_RTE-BovB 48960 49208 59 - . . . . . -1 -1 -1 . . . scaffold1562 WUBlastX LINE_CR1 125553 125741 107 - . . . . . -1 -1 -1 . . . scaffold536 WUBlastX LINE_RTE-X 21261 21785 131 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX DNA_TcMar-Tc1 732450 732632 74 + . . . . . -1 -1 -1 . . . scaffold40624 WUBlastX LINE_L1-Tx1 11424 11669 93 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 840382 841632 193 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 841918 842469 198 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 842563 842766 129 + . . . . . -1 -1 -1 . . . scaffold1258 WUBlastX DNA_Maverick 843169 844233 444 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy-Cigr 572555 574378 1117 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_RTE-X 857974 858396 126 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_RTE-X 69691 70452 147 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Pao 516412 516810 195 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 826899 827852 427 - . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_RTE-X 149673 150116 94 + . . scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold1599 WUBlastX LINE_RTE-X 712105 712254 43 - . . . . . -1 -1 -1 . . . scaffold37468 WUBlastX LTR_Gypsy 30700 31341 490 + . . . . . -1 -1 -1 . . . scaffold37468 WUBlastX LTR_Gypsy 31658 32917 842 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX LTR_Pao 179060 179116 61 + . . . . . -1 -1 -1 . . . scaffold33958 WUBlastX LTR_Gypsy 7635 7943 21 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Gypsy 210954 212435 377 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold728 WUBlastX DNA_En-Spm 438939 439088 29 + . . . . . -1 -1 -1 . . . scaffold41398 WUBlastX DNA_IS4EU 42185 42517 136 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 619013 619333 77 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX LINE_RTE-X 619339 619527 104 + . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L1-Tx1 11104 12018 160 + . . . . . -1 -1 -1 . . . scaffold425 WUBlastX DNA_En-Spm 254650 254814 28 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_L1 1256421 1257548 97 + . . . . . -1 -1 -1 . . . scaffold37900 WUBlastX LINE_RTE-BovB 4122 4328 64 - . . . . . -1 -1 -1 . . . scaffold37900 WUBlastX LINE_RTE-BovB 4319 4690 124 - . . . . . -1 -1 -1 . . . scaffold41700 WUBlastX DNA_Zator 46741 46908 43 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy-Cigr 1303682 1305064 620 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy-Cigr 1305846 1306394 154 + . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy-Cigr 507530 508102 199 + . . scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold113 WUBlastX LINE_CR1-L2 419560 420150 204 + . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_L2 633436 633936 140 + . . . . . -1 -1 -1 . . . scaffold1842 WUBlastX LINE_L2 58675 59151 101 - . . scaffold1842 GLEAN mRNA 42810 63379 0.990768 - . ID=CGI_10003201; scaffold40982 WUBlastX LTR_DIRS 87512 88084 126 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Ngaro 342548 343267 132 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX DNA_NOF 482397 483200 178 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Maverick 223799 223996 72 - . . . . . -1 -1 -1 . . . scaffold241 WUBlastX LTR_Pao 82533 83162 309 + . . scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold1061 WUBlastX DNA_Maverick 130379 131746 69 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_L1-Tx1 46042 47103 687 - . . . . . -1 -1 -1 . . . scaffold446 WUBlastX LINE_L1-Tx1 47928 48311 252 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LTR_Gypsy 137322 137786 253 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_Penelope 1289236 1289406 59 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX LTR_Pao 179489 179848 238 + . . . . . -1 -1 -1 . . . scaffold41472 WUBlastX DNA_Harbinger 18334 18795 204 + . . scaffold41472 GLEAN mRNA 5767 21457 0.999674 - . ID=CGI_10005140; scaffold1237 WUBlastX LTR_Gypsy 110769 111128 199 - . . . . . -1 -1 -1 . . . scaffold847 WUBlastX RC_Helitron 436649 436933 21 - . . scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold591 WUBlastX LTR_Ngaro 553723 554436 125 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Maverick 499158 499583 142 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Gypsy 41136 42071 229 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_RTE-X 375360 375449 64 - . . . . . -1 -1 -1 . . . scaffold109 WUBlastX LINE_L1-Tx1 364256 367702 1656 - . . . . . -1 -1 -1 . . . scaffold1886 WUBlastX DNA_PiggyBac 174142 174339 106 - . . . . . -1 -1 -1 . . . scaffold496 WUBlastX LTR_Ngaro 285736 285975 135 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 285980 286087 48 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 286119 286403 73 + . . scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold1115 WUBlastX LINE_L1-Tx1 100226 100936 152 - . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_CR1 221544 222995 558 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold676 WUBlastX LTR_Ngaro 299420 299752 91 - . . . . . -1 -1 -1 . . . scaffold1476 WUBlastX LINE_RTE-X 173026 173754 157 - . . scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold67 WUBlastX LTR_Gypsy 495660 496838 238 + . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_Gypsy 124388 125110 264 - . . . . . -1 -1 -1 . . . scaffold335 WUBlastX LTR_Gypsy 125091 127112 1790 - . . . . . -1 -1 -1 . . . C33730 WUBlastX LINE_L1 14117 14182 71 + . . . . . -1 -1 -1 . . . scaffold885 WUBlastX LINE_L1 1011064 1011912 154 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold42904 WUBlastX LTR_DIRS 43690 43869 88 + . . scaffold42904 GLEAN mRNA 39898 45913 0.830856 + . ID=CGI_10008098; scaffold42904 WUBlastX LTR_DIRS 43881 44162 177 + . . scaffold42904 GLEAN mRNA 39898 45913 0.830856 + . ID=CGI_10008098; scaffold1449 WUBlastX LINE_CR1 64522 65196 86 + . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LTR_Gypsy 341211 341435 145 + . . . . . -1 -1 -1 . . . scaffold655 WUBlastX LINE_L1 206657 206752 22 + . . scaffold655 GLEAN mRNA 206640 213790 0.998219 + . ID=CGI_10014952; scaffold126 WUBlastX LTR_Gypsy 545434 545922 179 + . . . . . -1 -1 -1 . . . scaffold1643 WUBlastX LTR_Pao 105568 106125 204 + . . scaffold1643 GLEAN mRNA 104668 107388 0.99993 + . ID=CGI_10008364; scaffold42648 WUBlastX DNA_IS4EU 120173 120520 207 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_L1-Tx1 217139 218122 117 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_TcMar-Fot1 1089685 1090149 154 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold257 WUBlastX DNA_MuDR 271682 271984 74 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Gypsy-Cigr 632291 632608 111 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Gypsy-Cigr 632601 632945 262 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Ngaro 104549 104740 90 - . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX DNA_MuDR 12709 13077 101 - . . . . . -1 -1 -1 . . . scaffold37938 WUBlastX DNA_MuDR 13570 13914 28 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_TcMar-Tc1 222556 222858 157 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_Gypsy-Cigr 82183 83172 309 + . . . . . -1 -1 -1 . . . scaffold522 WUBlastX RC_Helitron 537290 537493 44 + . . . . . -1 -1 -1 . . . scaffold39424 WUBlastX LINE_RTE-X 38723 39004 120 + . . . . . -1 -1 -1 . . . scaffold1782 WUBlastX DNA_Crypton 35354 35971 338 - . . scaffold1782 GLEAN mRNA 27311 46530 0.718451 + . ID=CGI_10004241; scaffold1532 WUBlastX DNA_IS4EU 486364 487068 323 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_L2 489301 490191 259 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold177 WUBlastX LINE_L1-Tx1 5714 6448 43 + . . . . . -1 -1 -1 . . . scaffold33842 WUBlastX LINE_L1-Tx1 7733 8128 105 - . . . . . -1 -1 -1 . . . C29010 WUBlastX LTR_DIRS 5198 5578 112 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_L2 64600 65451 355 + . . . . . -1 -1 -1 . . . scaffold126 WUBlastX LTR_Gypsy 547728 547850 40 + . . . . . -1 -1 -1 . . . scaffold42592 WUBlastX DNA_IS4EU 145436 145615 79 - . . . . . -1 -1 -1 . . . scaffold40270 WUBlastX LTR_Ngaro 6369 6656 137 - . . . . . -1 -1 -1 . . . scaffold43940 WUBlastX LINE_RTE-X 41838 42251 222 + . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_DIRS 1609023 1609334 128 + . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Maverick 236835 237263 287 - . . . . . -1 -1 -1 . . . scaffold563 WUBlastX LINE_L1 511110 511463 29 + . . scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold102 WUBlastX LTR_Pao 727434 727808 121 - . . . . . -1 -1 -1 . . . C33378 WUBlastX LTR_Ngaro 9080 9790 418 - . . . . . -1 -1 -1 . . . scaffold85 WUBlastX LTR_Ngaro 259933 260088 39 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_Harbinger 385197 385415 96 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX DNA_Harbinger 385864 386220 389 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX DNA_Maverick 1455442 1456317 383 + . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-X 64658 64738 36 - . . . . . -1 -1 -1 . . . scaffold1610 WUBlastX LTR_Ngaro 448702 449388 465 - . . . . . -1 -1 -1 . . . scaffold39974 WUBlastX LTR_Ngaro 66325 67329 478 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_DIRS 456616 457032 230 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_DIRS 457037 457459 252 - . . . . . -1 -1 -1 . . . scaffold172 WUBlastX DNA_TcMar-Tc1 268667 268897 120 + . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-X 298378 298944 206 + . . scaffold1877 GLEAN mRNA 295978 306967 1 + . ID=CGI_10011963; scaffold1885 WUBlastX DNA_Kolobok-IS4 338559 338888 49 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LTR_DIRS 1352745 1353680 458 - . . scaffold150 GLEAN mRNA 1351630 1358824 0.998084 - . ID=CGI_10028676; scaffold1402 WUBlastX LINE_L2 144433 145791 421 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX LINE_L1-Tx1 47389 48579 443 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_RTE-X 133608 133748 73 - . . . . . -1 -1 -1 . . . scaffold1324 WUBlastX LTR_Gypsy 463737 465137 392 - . . . . . -1 -1 -1 . . . scaffold1862 WUBlastX LINE_RTE-X 710948 711718 167 - . . . . . -1 -1 -1 . . . scaffold34420 WUBlastX LINE_L1-Tx1 2657 3598 588 + . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_L1-Tx1 59666 60394 627 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_hAT-Tip100 6293 7417 492 + . . scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold93 WUBlastX DNA_Kolobok 15773 16207 21 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1 596224 596421 30 + . . . . . -1 -1 -1 . . . scaffold1171 WUBlastX LINE_L1-Tx1 12442 12699 58 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold141 WUBlastX LTR_Gypsy 149277 149393 23 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 238222 238812 147 - . . . . . -1 -1 -1 . . . scaffold20 WUBlastX LINE_L1-Tx1 497387 497791 57 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Ngaro 1298492 1298740 190 - . . . . . -1 -1 -1 . . . scaffold1128 WUBlastX LTR_Ngaro 45360 45674 43 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LINE_RTE-X 230134 230601 143 - . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX LINE_RTE-X 231714 232073 112 - . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX LTR_Gypsy 295693 297660 740 - . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LTR_Gypsy 234992 236959 740 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX LTR_Gypsy 90710 92677 740 - . . . . . -1 -1 -1 . . . C34176 WUBlastX LTR_Gypsy 11263 11988 222 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LTR_Gypsy 189843 189995 20 - . . . . . -1 -1 -1 . . . scaffold1769 WUBlastX LTR_Gypsy 192185 192328 151 - . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LTR_Gypsy 66371 66451 27 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX RC_Helitron 189645 189872 25 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-BovB 113363 113806 97 + . . . . . -1 -1 -1 . . . scaffold1710 WUBlastX LINE_RTE-BovB 114272 114991 364 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LTR_Gypsy 684532 684873 29 - . . scaffold419 GLEAN mRNA 671072 685906 0.998967 - . ID=CGI_10028358; scaffold5 WUBlastX LTR_DIRS 48399 49421 834 + . . scaffold5 GLEAN mRNA 43954 49424 0.676364 + . ID=CGI_10012924; scaffold5 WUBlastX LTR_DIRS 48399 49421 834 + . . scaffold5 GLEAN mRNA 46548 64040 0.730165 - . ID=CGI_10012925; scaffold501 WUBlastX LTR_Ngaro 90539 90949 271 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 90959 91063 71 + . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 91056 91784 516 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy-Cigr 68253 69320 194 - . . scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold1253 WUBlastX LINE_CR1 54300 54521 29 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_CR1-L2 346967 347044 51 + . . . . . -1 -1 -1 . . . scaffold268 WUBlastX LINE_L2 54662 55075 24 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LINE_CR1 1234669 1234854 74 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold1832 WUBlastX LINE_L2 548993 549127 48 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L2 248146 248358 43 - . . . . . -1 -1 -1 . . . scaffold1576 WUBlastX LINE_CR1 54211 54255 20 + . . . . . -1 -1 -1 . . . scaffold43804 WUBlastX LINE_CR1 171386 171976 43 - . . scaffold43804 GLEAN mRNA 171251 172006 1 - . ID=CGI_10012556; scaffold907 WUBlastX LINE_CR1 5720 5914 41 + . . . . . -1 -1 -1 . . . scaffold1388 WUBlastX LINE_CR1-L2 214891 214980 22 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 341352 342020 23 + . . . . . -1 -1 -1 . . . scaffold33584 WUBlastX LTR_Gypsy 13648 14121 39 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_Penelope 599477 599611 77 + . . . . . -1 -1 -1 . . . scaffold352 WUBlastX LTR_Copia 189729 189962 56 - . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_Copia 136624 136761 41 - . . scaffold1321 GLEAN mRNA 136608 137201 1 - . ID=CGI_10010662; scaffold1589 WUBlastX LTR_Copia 280111 280314 34 - . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold363 WUBlastX LTR_Copia 270479 270520 20 + . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Copia 285415 285591 51 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LTR_Copia 67469 67687 73 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LTR_Copia 569327 569626 24 - . . scaffold317 GLEAN mRNA 568959 575632 0.98413 - . ID=CGI_10019362; scaffold41086 WUBlastX LTR_Copia 68319 68915 49 + . . . . . -1 -1 -1 . . . scaffold42392 WUBlastX LTR_Copia 135002 135292 48 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX DNA_hAT-Tip100 324254 324484 54 + . . . . . -1 -1 -1 . . . scaffold1418 WUBlastX DNA_hAT-Tip100 19333 19563 54 - . . . . . -1 -1 -1 . . . scaffold44054 WUBlastX DNA_hAT 220321 220566 63 - . . scaffold44054 GLEAN mRNA 218509 220647 0.531587 - . ID=CGI_10016164; scaffold534 WUBlastX DNA_hAT-Tip100 113728 114036 42 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LINE_L1 267995 268120 64 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold1301 WUBlastX DNA_hAT-Tip100 60193 60249 22 - . . . . . -1 -1 -1 . . . scaffold675 WUBlastX DNA_PiggyBac 71644 71931 59 + . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LINE_CR1 115498 115653 31 + . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Gypsy 83406 83561 64 - . . scaffold736 GLEAN mRNA 77478 84874 0.99909 - . ID=CGI_10004599; scaffold1316 WUBlastX LTR_Gypsy 260596 260916 57 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold385 WUBlastX LTR_Gypsy 263426 263875 25 + . . . . . -1 -1 -1 . . . scaffold43954 WUBlastX LTR_Gypsy 352846 353013 20 + . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_CR1-L2 517972 518127 43 + . . scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_CR1-L2 517972 518127 43 + . . scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold1509 WUBlastX LINE_CR1 173522 173845 20 - . . . . . -1 -1 -1 . . . scaffold221 WUBlastX LTR_Gypsy 53741 54010 24 + . . . . . -1 -1 -1 . . . scaffold1682 WUBlastX LTR_Gypsy-Cigr 430991 431230 58 + . . . . . -1 -1 -1 . . . scaffold36020 WUBlastX LTR_Gypsy-Cigr 21601 21825 54 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 153738 154094 70 - . . . . . -1 -1 -1 . . . scaffold37712 WUBlastX LTR_Gypsy 37291 37389 67 - . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold880 WUBlastX DNA_hAT-Tip100 423619 423777 66 - . . . . . -1 -1 -1 . . . scaffold39900 WUBlastX LTR_ERV1 44254 44976 50 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 20300 20476 65 + . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX LTR_Gypsy 28023 28199 65 + . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 367436 367750 30 + . . . . . -1 -1 -1 . . . scaffold43134 WUBlastX LTR_DIRS 194350 194430 51 - . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 8371 8640 55 - . . . . . -1 -1 -1 . . . scaffold32094 WUBlastX LTR_Ngaro 9967 10131 66 + . . . . . -1 -1 -1 . . . scaffold329 WUBlastX LTR_Ngaro 110959 111093 39 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LTR_Ngaro 380785 380910 22 + . . . . . -1 -1 -1 . . . scaffold683 WUBlastX LTR_Ngaro 203684 203836 54 + . . . . . -1 -1 -1 . . . scaffold659 WUBlastX LTR_DIRS 388969 389151 50 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_DIRS 317651 318013 25 - . . scaffold433 GLEAN mRNA 314553 319812 0.999992 + . ID=CGI_10027063; scaffold115 WUBlastX LINE_L2 675183 675287 34 + . . . . . -1 -1 -1 . . . scaffold709 WUBlastX LINE_L2 595447 595887 31 + . . . . . -1 -1 -1 . . . scaffold1249 WUBlastX LINE_L2 260900 260950 20 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold505 WUBlastX LINE_L2 55665 55784 82 - . . . . . -1 -1 -1 . . . scaffold796 WUBlastX LINE_L2 43128 43184 21 - . . . . . -1 -1 -1 . . . scaffold35446 WUBlastX LTR_Gypsy 17655 17729 24 - . . scaffold35446 GLEAN mRNA 11417 21109 0.682042 + . ID=CGI_10001510; scaffold1154 WUBlastX LTR_Gypsy 472587 472697 38 + . . . . . -1 -1 -1 . . . scaffold1321 WUBlastX LTR_Gypsy 129490 129996 25 - . . scaffold1321 GLEAN mRNA 124908 130065 0.986166 - . ID=CGI_10010661; scaffold1704 WUBlastX LTR_Gypsy 26621 27079 52 + . . scaffold1704 GLEAN mRNA 12405 27811 0.998148 + . ID=CGI_10010159; scaffold934 WUBlastX LTR_Gypsy 417703 417864 30 - . . . . . -1 -1 -1 . . . scaffold1204 WUBlastX LTR_Gypsy 50858 51226 65 - . . . . . -1 -1 -1 . . . scaffold1556 WUBlastX LTR_Gypsy 231772 232164 38 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Gypsy 521406 521546 30 - . . . . . -1 -1 -1 . . . scaffold146 WUBlastX LTR_Gypsy 842599 842772 27 + . . scaffold146 GLEAN mRNA 839937 845451 0.977393 + . ID=CGI_10024922; scaffold34106 WUBlastX LTR_Gypsy 11648 12115 71 + . . scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; C25612 WUBlastX LTR_Gypsy 2594 2776 46 + . . . . . -1 -1 -1 . . . scaffold38256 WUBlastX LTR_Gypsy 4280 4534 26 + . . . . . -1 -1 -1 . . . scaffold531 WUBlastX LTR_Gypsy 352774 353127 34 + . . . . . -1 -1 -1 . . . scaffold1419 WUBlastX LTR_Gypsy 12189 12302 63 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 28346 28480 24 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 28506 28676 30 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 28669 28731 31 - . . . . . -1 -1 -1 . . . scaffold417 WUBlastX LTR_Gypsy 32214 32366 55 - . . . . . -1 -1 -1 . . . scaffold733 WUBlastX DNA_Harbinger 71029 71334 39 + . . . . . -1 -1 -1 . . . scaffold532 WUBlastX LINE_L1 255826 256269 35 + . . . . . -1 -1 -1 . . . scaffold43314 WUBlastX LTR_Gypsy 68717 68845 41 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Harbinger 233847 233984 21 - . . . . . -1 -1 -1 . . . scaffold606 WUBlastX DNA_Harbinger 13640 13834 29 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX DNA_Harbinger 644284 644466 56 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX RC_Helitron 271455 271595 36 + . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold1584 WUBlastX RC_Helitron 342965 343297 74 - . . scaffold1584 GLEAN mRNA 342917 343357 0.69447 - . ID=CGI_10015089; scaffold113 WUBlastX DNA_hAT-Hobo 590418 590549 75 - . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; C32270 WUBlastX RC_Helitron 9547 9807 37 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX RC_Helitron 113000 113263 75 - . . . . . -1 -1 -1 . . . scaffold40680 WUBlastX DNA_Harbinger 25006 25194 53 + . . scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold1000 WUBlastX DNA_hAT-Ac 256913 257173 64 + . . scaffold1000 GLEAN mRNA 254688 266328 0.650465 + . ID=CGI_10013084; scaffold146 WUBlastX DNA_hAT-hATw 697913 698413 28 - . . scaffold146 GLEAN mRNA 671163 748128 0.737513 - . ID=CGI_10024919; scaffold1000 WUBlastX DNA_hAT-Ac 256748 256888 23 + . . scaffold1000 GLEAN mRNA 254688 266328 0.650465 + . ID=CGI_10013084; scaffold1327 WUBlastX DNA_Kolobok-IS4 346554 346805 29 - . . . . . -1 -1 -1 . . . scaffold40196 WUBlastX DNA_Kolobok-IS4 58467 58601 51 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Kolobok-IS4 65013 65135 40 + . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold35806 WUBlastX DNA_IS4EU 21881 22504 29 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX DNA_IS4EU 146766 146900 47 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_IS4EU 188589 188720 40 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX DNA_IS4EU 192130 193032 28 + . . scaffold13 GLEAN mRNA 172056 194004 0.998501 + . ID=CGI_10013207; scaffold469 WUBlastX LTR_ERVK 346341 346448 40 - . . scaffold469 GLEAN mRNA 345885 346673 0.967462 - . ID=CGI_10024673; scaffold43500 WUBlastX LINE_I 143946 143987 25 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LINE_I 357583 358281 35 + . . scaffold99 GLEAN mRNA 346755 358299 0.999992 + . ID=CGI_10021201; scaffold540 WUBlastX LTR_ERV1 110871 111074 23 - . . . . . -1 -1 -1 . . . scaffold1737 WUBlastX LTR_ERV1 387165 387344 25 + . . . . . -1 -1 -1 . . . scaffold1442 WUBlastX LTR_ERV1 74907 75128 24 + . . scaffold1442 GLEAN mRNA 72882 75260 0.853071 + . ID=CGI_10003587; scaffold967 WUBlastX LTR_ERV1 129714 129893 24 - . . scaffold967 GLEAN mRNA 127443 132839 0.997345 + . ID=CGI_10015454; scaffold867 WUBlastX LINE_L2 1058485 1058586 32 - . . scaffold867 GLEAN mRNA 1057405 1070089 0.30835 - . ID=CGI_10026260; scaffold1200 WUBlastX LINE_Jockey 35991 36074 22 - . . . . . -1 -1 -1 . . . scaffold1315 WUBlastX LINE_Jockey 175508 175864 53 + . . . . . -1 -1 -1 . . . scaffold41762 WUBlastX DNA_Kolobok 71336 71476 48 + . . . . . -1 -1 -1 . . . scaffold40172 WUBlastX LINE_L1 68000 68140 39 - . . . . . -1 -1 -1 . . . scaffold41762 WUBlastX LINE_L1 48530 48796 50 + . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_L1 215086 215208 50 + . . scaffold43702 GLEAN mRNA 215134 215346 0.618241 + . ID=CGI_10011914; scaffold1574 WUBlastX LINE_L1 127177 127287 68 - . . . . . -1 -1 -1 . . . scaffold42656 WUBlastX LINE_L1-Tx1 62733 62993 40 - . . scaffold42656 GLEAN mRNA 57925 65294 1 - . ID=CGI_10007413; scaffold1189 WUBlastX LINE_L1-Tx1 141221 141424 38 - . . scaffold1189 GLEAN mRNA 135660 152717 1 + . ID=CGI_10023800; scaffold867 WUBlastX LINE_L1-Tx1 254126 254347 45 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold40164 WUBlastX LINE_L1 7681 7743 24 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold365 WUBlastX LINE_L1 386503 386700 30 - . . . . . -1 -1 -1 . . . C24814 WUBlastX LINE_L1-Tx1 1061 1258 61 - . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L1 810940 811365 29 + . . . . . -1 -1 -1 . . . scaffold170 WUBlastX DNA_Kolobok 127675 127728 24 + . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LINE_L1 58930 59373 22 - . . scaffold1686 GLEAN mRNA 58573 59710 0.792752 - . ID=CGI_10005075; scaffold43364 WUBlastX LINE_L1 16260 16412 26 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_Kolobok 1069295 1069489 36 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_Kolobok-Hyd 1082467 1082823 66 + . . scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold1352 WUBlastX DNA_TcMar-Marin 427678 427932 22 + . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_TcMar-Marin 61198 61380 23 + . . scaffold370 GLEAN mRNA 48035 69825 0.999273 - . ID=CGI_10025517; scaffold1627 WUBlastX DNA_TcMar-Marin 25545 25682 41 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX DNA_TcMar-Marin 245298 245375 21 + . . . . . -1 -1 -1 . . . scaffold43798 WUBlastX DNA_TcMar-Marin 241054 241284 23 - . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX DNA_TcMar-Marin 280353 280973 22 + . . . . . -1 -1 -1 . . . scaffold1772 WUBlastX DNA_TcMar-Fot1 176667 177014 68 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LTR_Gypsy 78565 78927 44 + . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX LTR_ERV1 149299 149481 44 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX DNA_TcMar-Marin 445606 445818 46 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_TcMar-Marin 185595 185639 24 - . . . . . -1 -1 -1 . . . scaffold1283 WUBlastX DNA_TcMar-Marin 250376 250573 27 + . . scaffold1283 GLEAN mRNA 240961 258563 0.432673 - . ID=CGI_10011796; scaffold647 WUBlastX LINE_I 107111 107254 51 - . . . . . -1 -1 -1 . . . scaffold40100 WUBlastX LINE_LOA 5160 5561 25 - . . . . . -1 -1 -1 . . . scaffold787 WUBlastX LINE_L2 32559 32897 42 + . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_Penelope 24116 24430 32 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LINE_Penelope 1076206 1076580 23 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold409 WUBlastX LTR_Gypsy 84136 84660 29 - . . scaffold409 GLEAN mRNA 76958 91978 0.642495 - . ID=CGI_10004319; scaffold211 WUBlastX DNA_Harbinger 4195 4455 73 + . . . . . -1 -1 -1 . . . scaffold1021 WUBlastX LINE_Penelope 211268 211600 61 + . . . . . -1 -1 -1 . . . scaffold113 WUBlastX LINE_Penelope 680050 680220 33 - . . . . . -1 -1 -1 . . . scaffold37 WUBlastX LINE_Penelope 105729 106100 39 + . . . . . -1 -1 -1 . . . scaffold578 WUBlastX DNA_P 26237 26533 60 - . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold44054 WUBlastX DNA_P 428880 429017 25 - . . scaffold44054 GLEAN mRNA 428351 451614 0.884147 - . ID=CGI_10016180; scaffold446 WUBlastX DNA_P 185528 185788 64 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX LINE_I-Nimb 369037 369507 21 - . . . . . -1 -1 -1 . . . scaffold510 WUBlastX LINE_Penelope 203042 203197 79 - . . . . . -1 -1 -1 . . . scaffold454 WUBlastX LINE_Penelope 81838 82176 55 - . . . . . -1 -1 -1 . . . scaffold43210 WUBlastX LINE_RTE-BovB 25259 25360 39 - . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_RTE-BovB 151645 151749 59 + . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LINE_RTE-BovB 192753 192923 20 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 235135 235251 27 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX DNA_Maverick 41148 41264 36 - . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX DNA_Maverick 91675 92145 24 - . . . . . -1 -1 -1 . . . scaffold215 WUBlastX DNA_Maverick 109434 109844 59 + . . scaffold215 GLEAN mRNA 109419 110448 0.272728 + . ID=CGI_10006643; scaffold41598 WUBlastX DNA_PiggyBac 81423 81701 74 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_PiggyBac 512554 512631 48 - . . scaffold1221 GLEAN mRNA 505287 514877 0.549954 - . ID=CGI_10019748; scaffold1897 WUBlastX DNA_PiggyBac 643000 643077 48 - . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX DNA_PiggyBac 91969 92343 73 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX DNA_Maverick 244371 244577 51 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LINE_L2 139277 139555 66 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_Proto2 205018 205470 43 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_Proto2 92506 93024 20 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_Proto2 217894 218028 39 + . . . . . -1 -1 -1 . . . scaffold1371 WUBlastX LINE_R2 57671 58225 44 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_R2 77303 77470 27 - . . scaffold1480 GLEAN mRNA 77249 77533 0.999102 - . ID=CGI_10008636; scaffold37002 WUBlastX LINE_RTE-X 13328 13462 52 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 422144 422266 41 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 676430 676477 32 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LINE_RTE-X 676806 676880 44 + . . . . . -1 -1 -1 . . . scaffold41248 WUBlastX LINE_RTE-X 19315 19770 63 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_RTE-X 36208 36555 32 - . . scaffold165 GLEAN mRNA 35293 36948 0.531436 - . ID=CGI_10015310; scaffold388 WUBlastX LINE_RTE-X 528580 528729 33 - . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LINE_RTE-X 669060 669257 56 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_RTE-X 926216 926359 64 - . . . . . -1 -1 -1 . . . scaffold41356 WUBlastX LINE_RTE-X 57804 58178 44 - . . scaffold41356 GLEAN mRNA 49810 66673 0.811456 + . ID=CGI_10004995; scaffold681 WUBlastX LINE_RTE-X 296874 297083 46 + . . . . . -1 -1 -1 . . . scaffold599 WUBlastX LINE_RTE-X 278370 278576 49 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 998945 999229 23 + . . . . . -1 -1 -1 . . . scaffold156 WUBlastX LINE_RTE-X 327888 328073 56 - . . scaffold156 GLEAN mRNA 326940 337481 0.63561 + . ID=CGI_10026496; scaffold1017 WUBlastX LINE_RTE-X 58507 58833 34 - . . scaffold1017 GLEAN mRNA 46180 63837 0.999676 - . ID=CGI_10024980; scaffold54 WUBlastX LTR_Gypsy 588441 588572 23 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX DNA_En-Spm 1276634 1276861 60 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LTR_DIRS 305542 305790 26 - . . scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold421 WUBlastX LINE_RTE-X 247281 247571 48 - . . scaffold421 GLEAN mRNA 232502 254015 0.999281 - . ID=CGI_10012158; scaffold705 WUBlastX LINE_RTE-X 157874 158026 48 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_RTE-X 107722 107895 62 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-X 328155 328307 60 + . . . . . -1 -1 -1 . . . C26584 WUBlastX LINE_L1 3781 4041 35 + . . . . . -1 -1 -1 . . . scaffold35960 WUBlastX LINE_L1-Tx1 24455 24652 63 - . . . . . -1 -1 -1 . . . scaffold1299 WUBlastX LINE_L1-Tx1 138488 138685 47 - . . scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold419 WUBlastX DNA_PiggyBac 1381244 1381468 48 + . . . . . -1 -1 -1 . . . scaffold33584 WUBlastX LTR_Gypsy 13765 14070 50 + . . . . . -1 -1 -1 . . . scaffold98 WUBlastX LINE_L1-Tx1 336861 336980 53 - . . . . . -1 -1 -1 . . . scaffold43964 WUBlastX LINE_L1-Tx1 1925 2152 63 - . . . . . -1 -1 -1 . . . scaffold1819 WUBlastX LINE_L1-Tx1 176012 176200 44 - . . . . . -1 -1 -1 . . . scaffold1827 WUBlastX LTR_Copia 340967 341509 27 - . . scaffold1827 GLEAN mRNA 310035 354687 0.394933 - . ID=CGI_10013809; scaffold714 WUBlastX DNA_TcMar-Tc1 398937 399152 51 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold522 WUBlastX LTR_Gypsy 18372 18755 24 + . . . . . -1 -1 -1 . . . scaffold535 WUBlastX DNA_TcMar-Tc1 117066 117137 51 + . . scaffold535 GLEAN mRNA 111373 154699 0.592399 + . ID=CGI_10020283; scaffold43844 WUBlastX LTR_Gypsy 111566 111796 48 + . . . . . -1 -1 -1 . . . scaffold1627 WUBlastX LTR_Pao 95235 95279 20 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX DNA_hAT-Tip100 333150 333326 52 + . . . . . -1 -1 -1 . . . scaffold1286 WUBlastX LINE_CR1 114228 114698 50 - . . scaffold1286 GLEAN mRNA 98601 123345 0.396375 - . ID=CGI_10009514; scaffold1172 WUBlastX DNA_Kolobok 136337 136528 68 - . . scaffold1172 GLEAN mRNA 136358 137015 0.533411 - . ID=CGI_10006910; scaffold1172 WUBlastX DNA_Kolobok 136337 136528 68 - . . scaffold1172 GLEAN mRNA 130831 145007 0.99998 + . ID=CGI_10006909; scaffold43836 WUBlastX DNA_IS4EU 331684 331878 29 - . . . . . -1 -1 -1 . . . scaffold43836 WUBlastX DNA_IS4EU 332801 332929 44 - . . . . . -1 -1 -1 . . . scaffold6 WUBlastX DNA_hAT 723394 723519 58 + . . scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold43634 WUBlastX DNA_hAT-Ac 63349 63501 87 - . . scaffold43634 GLEAN mRNA 56957 73985 0.67193 + . ID=CGI_10011531; scaffold42198 WUBlastX LTR_Gypsy 91733 92212 49 + . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_Penelope 210560 211144 39 + . . scaffold1518 GLEAN mRNA 210347 219718 0.999512 + . ID=CGI_10017800; scaffold786 WUBlastX LINE_Penelope 224618 224971 24 + . . . . . -1 -1 -1 . . . scaffold1385 WUBlastX LINE_RTE-X 24613 24834 30 + . . scaffold1385 GLEAN mRNA 22815 31330 0.957817 - . ID=CGI_10013834; scaffold1343 WUBlastX LINE_RTE-X 9770 10171 27 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_RTE-X 49550 49657 23 - . . . . . -1 -1 -1 . . . scaffold833 WUBlastX LINE_R2 465796 465885 22 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold39482 WUBlastX DNA_PiggyBac 2 187 51 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_L2 331745 332539 38 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Ngaro 588288 588494 34 - . . scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold1249 WUBlastX DNA_Harbinger 36444 36536 49 + . . . . . -1 -1 -1 . . . scaffold271 WUBlastX LINE_Penelope 341057 341560 30 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_Penelope 160503 161024 67 - . . scaffold184 GLEAN mRNA 157859 165368 0.999999 - . ID=CGI_10014796; scaffold1599 WUBlastX LINE_L1 236229 236471 61 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_RTE-X 503138 503503 52 - . . scaffold664 GLEAN mRNA 503105 503419 0.999344 - . ID=CGI_10021453; scaffold1058 WUBlastX LTR_Gypsy 43168 43521 62 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_TcMar-Tc1 155647 155913 60 - . . scaffold751 GLEAN mRNA 154176 165740 0.999947 - . ID=CGI_10017388; scaffold1736 WUBlastX LINE_L1-Tx1 272605 272766 22 + . . scaffold1736 GLEAN mRNA 268738 276421 0.999662 + . ID=CGI_10020962; scaffold1599 WUBlastX LINE_L1-Tx1 546981 547286 31 + . . scaffold1599 GLEAN mRNA 541949 554448 0.648153 + . ID=CGI_10027151; C29498 WUBlastX LINE_L1-Tx1 1804 2040 55 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1-Tx1 394496 394918 36 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Gypsy 154097 154207 34 - . . . . . -1 -1 -1 . . . scaffold4 WUBlastX DNA_IS4EU 219178 219516 45 + . . . . . -1 -1 -1 . . . scaffold38990 WUBlastX LINE_L2 63131 63532 65 - . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_L2 60330 61094 65 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX DNA_Kolobok-Hyd 240731 240799 27 + . . scaffold1619 GLEAN mRNA 240414 243906 0.998486 + . ID=CGI_10010223; scaffold1179 WUBlastX LINE_L1-Tx1 412646 412978 67 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LINE_RTE-X 268989 269192 96 + . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX DNA_PiggyBac 511248 511319 22 - . . scaffold1221 GLEAN mRNA 505287 514877 0.549954 - . ID=CGI_10019748; scaffold1188 WUBlastX LINE_CR1-L2 657098 657391 22 - . . scaffold1188 GLEAN mRNA 648038 660238 0.573951 - . ID=CGI_10025493; scaffold1822 WUBlastX LTR_Gypsy 8877 9263 91 + . . . . . -1 -1 -1 . . . scaffold1107 WUBlastX LINE_L1 42683 42988 81 - . . scaffold1107 GLEAN mRNA 25384 68274 0.797312 + . ID=CGI_10004768; scaffold847 WUBlastX LINE_L1-Tx1 126819 127142 100 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1 491311 491433 22 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1 805839 806372 36 + . . scaffold3 GLEAN mRNA 805376 811617 0.747251 + . ID=CGI_10027304; scaffold1578 WUBlastX LINE_L2 159316 159654 85 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX DNA_TcMar-Tc2 354898 355176 86 + . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX DNA_TcMar-Marin 10653 11162 98 - . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-X 242524 242571 21 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_RTE-X 246066 246425 37 - . . scaffold266 GLEAN mRNA 236877 257451 0.649405 - . ID=CGI_10013355; scaffold867 WUBlastX LINE_L1-Tx1 256334 256414 21 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold784 WUBlastX LINE_L2 50011 50181 26 - . . . . . -1 -1 -1 . . . C33256 WUBlastX LTR_Gypsy 8928 9299 70 - . . . . . -1 -1 -1 . . . C33256 WUBlastX LTR_Gypsy 10033 10290 36 - . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX DNA_TcMar-Fot1 83282 83701 90 + . . . . . -1 -1 -1 . . . scaffold502 WUBlastX DNA_MuDR 558096 558203 58 + . . . . . -1 -1 -1 . . . scaffold200 WUBlastX DNA_MuDR 63995 64102 58 - . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX LINE_RTE-X 85984 86151 38 + . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 85984 86151 38 + . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold1715 WUBlastX DNA_hAT-Ac 435094 435540 48 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX DNA_TcMar-Tc1 391491 391904 56 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Ngaro 926606 926992 100 - . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 57351 57536 147 - . . . . . -1 -1 -1 . . . scaffold456 WUBlastX LINE_L1 97018 97563 100 - . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1 128902 129213 52 + . . . . . -1 -1 -1 . . . scaffold43388 WUBlastX LINE_CR1 230520 231257 24 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold169 WUBlastX LTR_Pao 504403 504960 120 - . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_Harbinger 398377 398943 70 + . . . . . -1 -1 -1 . . . scaffold39126 WUBlastX LINE_L1 55801 56235 107 - . . . . . -1 -1 -1 . . . scaffold40938 WUBlastX LINE_L1 6674 7252 83 - . . . . . -1 -1 -1 . . . scaffold1186 WUBlastX DNA_IS4EU 264063 264848 87 + . . . . . -1 -1 -1 . . . scaffold1836 WUBlastX LINE_L1 111462 111692 26 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX DNA_NOF? 306319 306798 39 - . . . . . -1 -1 -1 . . . scaffold116 WUBlastX LINE_RTE-X 212436 212777 102 + . . scaffold116 GLEAN mRNA 199454 222023 0.8905 - . ID=CGI_10009421; scaffold490 WUBlastX LINE_RTE-X 69678 69971 43 - . . . . . -1 -1 -1 . . . scaffold1379 WUBlastX LINE_RTE-X 17618 18490 45 - . . . . . -1 -1 -1 . . . scaffold1163 WUBlastX LINE_RTE-X 198380 198577 129 - . . scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold132 WUBlastX LINE_L2 60817 61626 88 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LINE_L2 10458 10802 65 + . . . . . -1 -1 -1 . . . scaffold40194 WUBlastX LINE_L2 29364 29693 107 - . . . . . -1 -1 -1 . . . scaffold1891 WUBlastX LINE_L2 179285 179800 82 - . . . . . -1 -1 -1 . . . scaffold38944 WUBlastX LINE_L2 40365 40844 87 - . . . . . -1 -1 -1 . . . C31762 WUBlastX LINE_I 8368 8430 24 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_RTE-BovB 252170 252457 45 + . . scaffold419 GLEAN mRNA 243081 266501 0.999183 - . ID=CGI_10028337; scaffold760 WUBlastX LINE_L1-Tx1 130657 130962 57 + . . scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold145 WUBlastX DNA_Harbinger 12636 12758 76 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX DNA_Harbinger 1002246 1002368 76 + . . scaffold149 GLEAN mRNA 989278 1013104 0.999502 - . ID=CGI_10025337; scaffold481 WUBlastX LTR_Gypsy 240362 240562 21 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_Penelope 83449 83901 30 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX LINE_Penelope 83915 84013 27 - . . . . . -1 -1 -1 . . . scaffold685 WUBlastX DNA_Kolobok 84267 84458 69 + . . scaffold685 GLEAN mRNA 83408 84482 1 + . ID=CGI_10004493; scaffold227 WUBlastX LINE_Penelope 307210 307296 30 + . . . . . -1 -1 -1 . . . scaffold327 WUBlastX LINE_RTE-X 37144 37260 51 + . . . . . -1 -1 -1 . . . scaffold5 WUBlastX LINE_L1-Tx1 316358 316633 137 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Gypsy 627122 627694 73 + . . . . . -1 -1 -1 . . . scaffold412 WUBlastX LTR_Gypsy 419012 419740 256 - . . . . . -1 -1 -1 . . . scaffold1850 WUBlastX LTR_Gypsy 243073 243792 287 + . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX LTR_Pao 71171 71584 248 - . . . . . -1 -1 -1 . . . scaffold40794 WUBlastX LTR_Pao 73239 73598 130 - . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LTR_Pao 18860 19432 131 + . . scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold557 WUBlastX LINE_CR1-L2 172804 173487 103 + . . . . . -1 -1 -1 . . . scaffold873 WUBlastX DNA_Maverick 174978 175145 23 + . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LINE_Proto2 35774 36853 93 + . . . . . -1 -1 -1 . . . scaffold368 WUBlastX LINE_RTE-X 559758 559967 34 - . . . . . -1 -1 -1 . . . scaffold39268 WUBlastX LINE_RTE-X 56667 57146 116 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold36398 WUBlastX LTR_Gypsy-Cigr 24367 26478 726 - . . . . . -1 -1 -1 . . . scaffold34610 WUBlastX LTR_Gypsy-Cigr 473 1231 625 - . . . . . -1 -1 -1 . . . scaffold39050 WUBlastX LINE_L1-Tx1 51630 52697 184 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy-Cigr 6656 7762 682 - . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy-Cigr 8211 8657 40 - . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LINE_L1-Tx1 49328 49612 52 - . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LINE_L1-Tx1 49650 51119 714 - . . . . . -1 -1 -1 . . . scaffold1096 WUBlastX LINE_L1-Tx1 51091 51540 106 - . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_Crypton 98242 98595 54 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_Crypton 99181 99663 56 + . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LTR_Gypsy 628096 628374 21 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_DIRS 295540 295917 136 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX LTR_DIRS 295944 296051 60 + . . . . . -1 -1 -1 . . . scaffold1272 WUBlastX LINE_L1 113781 114176 151 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_RTE-X 403722 405050 37 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold280 WUBlastX LINE_RTE-X 383788 384102 78 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_DIRS 96756 97208 57 + . . . . . -1 -1 -1 . . . scaffold818 WUBlastX LTR_DIRS 97202 97303 24 + . . . . . -1 -1 -1 . . . scaffold619 WUBlastX DNA_IS4EU 466207 467493 95 - . . . . . -1 -1 -1 . . . scaffold1527 WUBlastX LINE_RTE-X 176128 176265 30 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LTR_Gypsy 477100 477447 97 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_CR1-L2 591319 591396 29 + . . . . . -1 -1 -1 . . . scaffold43 WUBlastX LTR_Pao 82451 82645 80 - . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX DNA_Kolobok-IS4 25804 25959 40 + . . . . . -1 -1 -1 . . . scaffold1823 WUBlastX DNA_Kolobok-IS4 26459 27103 78 + . . scaffold1823 GLEAN mRNA 25975 45605 0.99537 + . ID=CGI_10005169; scaffold40440 WUBlastX LINE_Penelope 53950 54405 33 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold1816 WUBlastX LINE_RTE-X 294866 295246 166 + . . . . . -1 -1 -1 . . . scaffold35870 WUBlastX LINE_L1-Tx1 13883 14632 126 - . . . . . -1 -1 -1 . . . scaffold38026 WUBlastX LINE_L1 32522 33790 89 + . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_L2 856085 856246 56 - . . . . . -1 -1 -1 . . . scaffold79 WUBlastX LINE_L2 857247 857414 70 - . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1 121944 122204 77 - . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold541 WUBlastX LTR_Gypsy 16806 17246 309 + . . . . . -1 -1 -1 . . . scaffold40208 WUBlastX RC_Helitron 32816 33775 573 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold40208 WUBlastX RC_Helitron 33775 35592 1020 + . . scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold502 WUBlastX LTR_Gypsy 252513 252716 90 - . . . . . -1 -1 -1 . . . scaffold42994 WUBlastX LTR_Gypsy-Cigr 187969 190602 1578 + . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Gypsy 346939 347187 168 + . . . . . -1 -1 -1 . . . scaffold716 WUBlastX LTR_Gypsy 347190 347348 52 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 215405 215524 91 + . . . . . -1 -1 -1 . . . scaffold1115 WUBlastX LINE_L1-Tx1 99946 100227 23 - . . . . . -1 -1 -1 . . . C18064 WUBlastX LTR_Gypsy 18 284 267 + . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LTR_ERV1 379442 379954 64 - . . . . . -1 -1 -1 . . . C34010 WUBlastX LTR_Ngaro 13657 13986 134 + . . . . . -1 -1 -1 . . . C34010 WUBlastX LTR_Ngaro 14160 14342 79 + . . . . . -1 -1 -1 . . . scaffold490 WUBlastX DNA_Harbinger 201902 201955 22 - . . . . . -1 -1 -1 . . . scaffold1077 WUBlastX DNA_Maverick 499582 499839 100 - . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 573849 574280 210 + . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LINE_L1-Tx1 181675 181872 66 - . . . . . -1 -1 -1 . . . scaffold422 WUBlastX DNA_TcMar-Tc1 95576 95752 52 - . . . . . -1 -1 -1 . . . scaffold888 WUBlastX LINE_L1-Tx1 8641 9408 109 + . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LINE_L1-Tx1 28767 29675 25 + . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 170448 171479 57 - . . scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold847 WUBlastX LTR_Pao 277741 280167 1935 - . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold1749 WUBlastX LTR_Gypsy 149143 149607 247 + . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX DNA_Harbinger 46553 46723 74 - . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LTR_Pao 310641 310742 35 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 310744 311604 663 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold152 WUBlastX LINE_CR1 74201 74530 230 + . . scaffold152 GLEAN mRNA 60138 75351 0.999676 - . ID=CGI_10014894; scaffold664 WUBlastX LTR_Ngaro 301352 301474 36 - . . . . . -1 -1 -1 . . . scaffold275 WUBlastX LINE_RTE-X 117120 117395 93 + . . . . . -1 -1 -1 . . . scaffold544 WUBlastX LINE_RTE-X 662105 662842 222 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_RTE-X 90704 91300 266 + . . scaffold983 GLEAN mRNA 90425 91342 0.906413 + . ID=CGI_10014027; scaffold1411 WUBlastX LTR_Gypsy-Cigr 121268 124207 2172 + . . . . . -1 -1 -1 . . . scaffold164 WUBlastX LINE_RTE-BovB 311054 311254 42 - . . . . . -1 -1 -1 . . . scaffold1251 WUBlastX LTR_Pao 37319 40987 2388 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 317985 318413 111 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LINE_RTE-X 819374 820129 162 + . . . . . -1 -1 -1 . . . scaffold817 WUBlastX DNA_hAT 210840 211001 40 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LINE_CR1 316994 318199 169 - . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LTR_Gypsy 1212596 1213132 135 + . . . . . -1 -1 -1 . . . scaffold1704 WUBlastX LINE_RTE-X 40733 40843 34 - . . scaffold1704 GLEAN mRNA 35457 41695 0.675217 - . ID=CGI_10010162; scaffold1562 WUBlastX LINE_RTE-X 116715 116807 32 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_DIRS 1119139 1119405 103 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX DNA_En-Spm 146003 146404 159 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX DNA_hAT-hATw 843596 844513 33 + . . scaffold370 GLEAN mRNA 838405 846799 0.855201 + . ID=CGI_10025566; scaffold1480 WUBlastX LINE_L2 121031 121129 31 - . . . . . -1 -1 -1 . . . scaffold1480 WUBlastX LINE_L2 121275 121793 161 - . . . . . -1 -1 -1 . . . scaffold914 WUBlastX LTR_Ngaro 363308 363931 230 - . . . . . -1 -1 -1 . . . scaffold34740 WUBlastX LTR_Ngaro 7197 7691 266 - . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LTR_Gypsy 290492 290782 35 - . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_Proto2 36886 38745 170 + . . . . . -1 -1 -1 . . . scaffold274 WUBlastX LTR_Copia 135725 136540 417 + . . scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold162 WUBlastX DNA_hAT-Tip100 32187 32477 72 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_hAT-Tip100 32916 33059 37 - . . . . . -1 -1 -1 . . . scaffold162 WUBlastX DNA_hAT-Tip100 34196 35053 250 - . . . . . -1 -1 -1 . . . scaffold1467 WUBlastX LINE_R2-Hero 4528 4815 180 - . . . . . -1 -1 -1 . . . scaffold1467 WUBlastX LINE_R2-Hero 4791 4889 37 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_RTE-X 4122 4487 68 + . . scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold589 WUBlastX DNA_TcMar-Tc1 26902 27792 363 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX DNA_IS4EU 204603 205397 406 + . . scaffold150 GLEAN mRNA 202869 211925 0.738569 - . ID=CGI_10028590; scaffold257 WUBlastX DNA_MuDR 271814 272854 383 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX LTR_Gypsy 439016 439129 26 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LTR_Gypsy 369773 369991 40 - . . . . . -1 -1 -1 . . . scaffold42032 WUBlastX DNA_MuDR 124554 125579 366 - . . . . . -1 -1 -1 . . . scaffold38378 WUBlastX LINE_L1 51806 51949 52 - . . . . . -1 -1 -1 . . . scaffold1080 WUBlastX DNA_En-Spm 262091 263065 138 - . . scaffold1080 GLEAN mRNA 255570 275608 0.591325 - . ID=CGI_10012678; scaffold1080 WUBlastX DNA_En-Spm 263131 264048 255 - . . scaffold1080 GLEAN mRNA 255570 275608 0.591325 - . ID=CGI_10012678; scaffold35910 WUBlastX LINE_Penelope 9392 9700 118 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX LINE_Penelope 9693 10190 190 + . . . . . -1 -1 -1 . . . scaffold35910 WUBlastX LINE_Penelope 10198 10446 151 + . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_DIRS 46555 46728 90 + . . . . . -1 -1 -1 . . . scaffold41304 WUBlastX LTR_Ngaro 95430 95630 98 + . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_Gypsy-Cigr 479553 480110 360 - . . . . . -1 -1 -1 . . . scaffold40938 WUBlastX LINE_L1-Tx1 4936 5706 71 - . . . . . -1 -1 -1 . . . scaffold40938 WUBlastX LINE_L1-Tx1 6029 7144 239 - . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_En-Spm 179733 180023 31 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX DNA_TcMar-Tc1 242061 242615 350 - . . . . . -1 -1 -1 . . . scaffold837 WUBlastX LTR_Gypsy 7360 7815 132 + . . . . . -1 -1 -1 . . . scaffold1647 WUBlastX LTR_Gypsy 8370 8516 47 - . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX LINE_RTE-X 193262 193540 99 + . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold43842 WUBlastX LINE_RTE-X 193494 194351 359 + . . scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold847 WUBlastX DNA_TcMar-Tc1 631990 632226 151 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX DNA_PiggyBac 282477 283292 357 - . . . . . -1 -1 -1 . . . scaffold1785 WUBlastX DNA_Harbinger 908659 908856 43 + . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LTR_Gypsy-Cigr 602663 603172 187 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX LINE_L1-Tx1 542367 542642 40 - . . . . . -1 -1 -1 . . . scaffold36936 WUBlastX DNA_Maverick 23613 24632 582 - . . scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold498 WUBlastX LTR_Gypsy 52193 52897 106 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LINE_RTE-X 280871 281302 56 - . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LTR_Pao 8453 9277 721 + . . . . . -1 -1 -1 . . . scaffold700 WUBlastX LTR_DIRS 110454 110744 85 - . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 72956 73156 96 + . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 73146 73601 408 + . . . . . -1 -1 -1 . . . scaffold180 WUBlastX DNA_Maverick 73597 74073 208 + . . . . . -1 -1 -1 . . . scaffold230 WUBlastX DNA_hAT-Tip100 129691 129777 68 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 129903 130286 130 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 130771 131721 321 - . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold36906 WUBlastX LTR_Pao 37910 38881 868 - . . . . . -1 -1 -1 . . . scaffold106 WUBlastX LINE_RTE-X 553097 553339 81 + . . . . . -1 -1 -1 . . . scaffold1757 WUBlastX LINE_RTE-X 51676 52395 231 + . . . . . -1 -1 -1 . . . scaffold562 WUBlastX LINE_CR1-L2 49570 50823 770 - . . . . . -1 -1 -1 . . . scaffold472 WUBlastX LINE_RTE-X 157383 159188 692 - . . . . . -1 -1 -1 . . . C33730 WUBlastX LTR_Pao 2526 4127 757 - . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LTR_Pao 186877 187059 28 + . . . . . -1 -1 -1 . . . scaffold1259 WUBlastX LTR_Foamy 36996 37235 73 + . . . . . -1 -1 -1 . . . scaffold1566 WUBlastX LTR_Pao 15393 15482 69 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Copia 1097994 1098239 61 - . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold1187 WUBlastX LTR_Copia 48017 48334 20 + . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LTR_Copia 9883 10224 56 + . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LTR_Copia 538587 539231 38 + . . . . . -1 -1 -1 . . . scaffold1084 WUBlastX LTR_Copia 37677 37772 25 + . . scaffold1084 GLEAN mRNA 31266 40802 0.801676 + . ID=CGI_10010075; scaffold42022 WUBlastX LINE_L1 127545 127643 69 + . . . . . -1 -1 -1 . . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 175290 175358 38 + . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LTR_Gypsy 87955 88044 33 - . . . . . -1 -1 -1 . . . scaffold1073 WUBlastX LTR_Gypsy 5 334 61 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_PiggyBac 1073333 1073542 80 - . . scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; C24396 WUBlastX LINE_L1 1655 1957 28 - . . . . . -1 -1 -1 . . . scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354282 46 + . . scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold363 WUBlastX DNA_hAT-Tip100 203163 203708 21 + . . scaffold363 GLEAN mRNA 199137 204611 0.999596 + . ID=CGI_10019296; scaffold150 WUBlastX DNA_hAT 87137 87373 30 - . . . . . -1 -1 -1 . . . C34256 WUBlastX DNA_hAT-Tip100 3007 3210 56 - . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX DNA_hAT 22276 22458 50 + . . scaffold1900 GLEAN mRNA 17727 24416 0.723538 + . ID=CGI_10017323; scaffold43 WUBlastX LINE_L2 539334 539567 21 - . . scaffold43 GLEAN mRNA 538185 539879 1 - . ID=CGI_10021358; scaffold142 WUBlastX LINE_CR1 752765 752845 38 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_CR1-L2 54891 55022 39 - . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_CR1 171404 171505 29 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_CR1 330219 330422 47 - . . . . . -1 -1 -1 . . . C29974 WUBlastX LINE_L2 1822 1914 20 + . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_CR1-L2 506557 506820 55 - . . . . . -1 -1 -1 . . . scaffold581 WUBlastX LINE_CR1 353811 353981 43 + . . . . . -1 -1 -1 . . . scaffold759 WUBlastX LINE_CR1 80831 81052 62 + . . . . . -1 -1 -1 . . . scaffold205 WUBlastX LINE_L2 29635 29760 57 + . . . . . -1 -1 -1 . . . scaffold1484 WUBlastX LINE_L2 267465 267797 48 - . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_L2 414423 414611 55 - . . . . . -1 -1 -1 . . . scaffold976 WUBlastX LINE_L2 371100 371447 24 + . . scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold890 WUBlastX LINE_CR1 290670 290954 39 - . . scaffold890 GLEAN mRNA 287435 312343 0.999997 - . ID=CGI_10014480; scaffold59 WUBlastX LINE_CR1 212380 212427 24 - . . . . . -1 -1 -1 . . . scaffold907 WUBlastX LINE_CR1 5124 5156 22 + . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_CR1 526755 527063 25 + . . . . . -1 -1 -1 . . . scaffold88 WUBlastX LINE_CR1 213731 213868 45 - . . . . . -1 -1 -1 . . . scaffold48 WUBlastX LINE_CR1-L2 700194 700370 38 + . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_L2 368068 368316 52 - . . . . . -1 -1 -1 . . . scaffold42648 WUBlastX LINE_CR1 66595 66648 30 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_CR1 604332 604385 30 - . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX LINE_CR1 95043 95096 30 - . . . . . -1 -1 -1 . . . scaffold659 WUBlastX LINE_CR1 362519 362716 54 + . . . . . -1 -1 -1 . . . scaffold36170 WUBlastX LTR_Gypsy-Cigr 10250 10408 45 - . . . . . -1 -1 -1 . . . scaffold43136 WUBlastX LTR_Gypsy 7880 8113 65 + . . . . . -1 -1 -1 . . . scaffold39014 WUBlastX LTR_Gypsy 4457 4963 32 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_RTE-BovB 182677 182757 21 - . . . . . -1 -1 -1 . . . scaffold1018 WUBlastX LTR_Gypsy 519392 519739 53 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LTR_Ngaro 1081145 1081339 42 - . . scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold257 WUBlastX LTR_Ngaro 1067285 1067734 24 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LTR_Ngaro 107422 107577 23 + . . . . . -1 -1 -1 . . . scaffold39358 WUBlastX LTR_Ngaro 18979 19299 67 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LTR_DIRS 83385 83747 30 + . . scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold41882 WUBlastX LINE_L2 90625 90792 39 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L2 103363 103482 21 + . . . . . -1 -1 -1 . . . scaffold852 WUBlastX LINE_L2 117314 117400 33 + . . . . . -1 -1 -1 . . . scaffold90 WUBlastX LTR_Ngaro 161375 161488 45 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX LTR_DIRS 938027 938326 41 - . . . . . -1 -1 -1 . . . scaffold363 WUBlastX LTR_Ngaro 362137 362430 51 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX LTR_Ngaro 602524 602679 31 + . . . . . -1 -1 -1 . . . scaffold1330 WUBlastX LTR_Ngaro 229853 229924 37 + . . . . . -1 -1 -1 . . . scaffold1149 WUBlastX DNA_hAT-Ac 220073 220261 72 + . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold1584 WUBlastX RC_Helitron 342956 343354 60 - . . scaffold1584 GLEAN mRNA 342917 343357 0.69447 - . ID=CGI_10015089; scaffold1761 WUBlastX RC_Helitron 64981 65373 27 + . . . . . -1 -1 -1 . . . scaffold180 WUBlastX RC_Helitron 36819 37214 71 - . . scaffold180 GLEAN mRNA 28202 49111 0.648909 - . ID=CGI_10004233; scaffold1741 WUBlastX RC_Helitron 587713 587763 22 + . . scaffold1741 GLEAN mRNA 575954 614216 0.201236 + . ID=CGI_10024047; scaffold425 WUBlastX DNA_IS4EU 464180 464353 57 - . . . . . -1 -1 -1 . . . C34552 WUBlastX DNA_IS4EU 14915 15100 45 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX DNA_IS4EU 254388 255116 27 + . . scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold1362 WUBlastX DNA_Kolobok-IS4 572964 573455 41 - . . scaffold1362 GLEAN mRNA 572276 574419 0.938876 - . ID=CGI_10023946; scaffold1123 WUBlastX DNA_Kolobok-IS4 335354 335704 68 - . . scaffold1123 GLEAN mRNA 333329 335551 0.999996 - . ID=CGI_10018737; scaffold1244 WUBlastX DNA_Kolobok-IS4 605091 605582 41 + . . scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold664 WUBlastX DNA_IS4EU 507634 507813 36 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX DNA_IS4EU 507915 508001 42 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX DNA_IS4EU 10461 11345 32 + . . scaffold1004 GLEAN mRNA 10032 23372 0.57306 + . ID=CGI_10020759; scaffold1004 WUBlastX DNA_IS4EU 10461 11345 32 + . . scaffold1004 GLEAN mRNA 10170 36067 1 - . ID=CGI_10020760; scaffold382 WUBlastX DNA_IS4EU 6526 6687 25 - . . . . . -1 -1 -1 . . . scaffold43 WUBlastX DNA_IS4EU 204843 205727 32 - . . . . . -1 -1 -1 . . . scaffold448 WUBlastX LINE_I 106814 107503 45 - . . . . . -1 -1 -1 . . . scaffold41344 WUBlastX LINE_I 12777 12842 22 + . . . . . -1 -1 -1 . . . scaffold94 WUBlastX LTR_ERVK 64312 64422 42 + . . scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold1883 WUBlastX LINE_I 27276 27830 44 + . . . . . -1 -1 -1 . . . scaffold43028 WUBlastX LINE_I 69706 70002 38 + . . scaffold43028 GLEAN mRNA 67355 71730 1 + . ID=CGI_10008504; scaffold42656 WUBlastX DNA_Harbinger 167056 167313 56 + . . scaffold42656 GLEAN mRNA 148895 177088 0.417801 - . ID=CGI_10007419; scaffold583 WUBlastX DNA_Harbinger 234180 234329 68 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_Harbinger 586684 586839 30 + . . scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold38822 WUBlastX DNA_Harbinger 33846 34031 35 - . . . . . -1 -1 -1 . . . scaffold314 WUBlastX LTR_Gypsy 82454 82525 23 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 800334 800744 39 + . . . . . -1 -1 -1 . . . scaffold1698 WUBlastX LTR_Gypsy 81047 81451 53 - . . scaffold1698 GLEAN mRNA 81014 81520 0.994893 - . ID=CGI_10019366; scaffold39346 WUBlastX LTR_Gypsy 33525 33671 52 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LTR_Gypsy 128681 128815 45 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LTR_Gypsy 154092 154256 74 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Gypsy 472255 472452 26 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy 7928 8317 28 - . . scaffold1221 GLEAN mRNA 6329 8222 0.996819 - . ID=CGI_10019721; scaffold35444 WUBlastX LTR_Gypsy 6125 6250 40 - . . scaffold35444 GLEAN mRNA 591 6430 0.999654 - . ID=CGI_10001555; scaffold1362 WUBlastX LTR_Gypsy 253865 254080 72 - . . . . . -1 -1 -1 . . . scaffold1350 WUBlastX LTR_Gypsy 34118 34636 44 + . . scaffold1350 GLEAN mRNA 34597 41993 0.49982 - . ID=CGI_10017291; scaffold1061 WUBlastX LTR_Gypsy 122368 122547 53 + . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_L2 345380 345592 54 - . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 345380 345592 54 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold583 WUBlastX LTR_DIRS 281793 282044 32 + . . . . . -1 -1 -1 . . . scaffold837 WUBlastX DNA_TcMar-Tc1 21692 22024 39 - . . . . . -1 -1 -1 . . . scaffold378 WUBlastX LINE_L1-Tx1 255175 255420 42 - . . scaffold378 GLEAN mRNA 247048 256613 0.78919 - . ID=CGI_10017643; scaffold200 WUBlastX LINE_L1-Tx1 113524 113742 73 + . . . . . -1 -1 -1 . . . scaffold34732 WUBlastX LINE_L1 16245 16373 54 + . . scaffold34732 GLEAN mRNA 11726 18752 1 - . ID=CGI_10001335; scaffold1490 WUBlastX LINE_L1 392935 393474 30 + . . scaffold1490 GLEAN mRNA 376771 397004 0.920012 + . ID=CGI_10014923; scaffold1688 WUBlastX DNA_Kolobok 173015 173395 24 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Kolobok-Hyd 580621 581292 36 - . . scaffold365 GLEAN mRNA 578843 581397 0.999968 - . ID=CGI_10022744; scaffold365 WUBlastX DNA_Kolobok-Hyd 580621 581292 36 - . . scaffold365 GLEAN mRNA 570241 589384 0.479657 + . ID=CGI_10022743; scaffold1128 WUBlastX DNA_IS4EU 49322 49588 49 - . . . . . -1 -1 -1 . . . scaffold775 WUBlastX LINE_L1-Tx1 123385 123726 53 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1 546942 547148 30 + . . scaffold1599 GLEAN mRNA 541949 554448 0.648153 + . ID=CGI_10027151; scaffold1035 WUBlastX LINE_L1 189658 189780 22 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L1-Tx1 720730 721038 20 - . . scaffold678 GLEAN mRNA 717644 727846 0.937362 - . ID=CGI_10026375; scaffold338 WUBlastX LINE_L1-Tx1 163324 163422 21 - . . . . . -1 -1 -1 . . . scaffold1806 WUBlastX LINE_Penelope 88937 89194 21 + . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold227 WUBlastX LINE_Penelope 295011 295187 48 + . . . . . -1 -1 -1 . . . scaffold1464 WUBlastX LINE_Penelope 6982 7284 31 - . . scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold847 WUBlastX LINE_Penelope 426123 426395 31 + . . . . . -1 -1 -1 . . . scaffold670 WUBlastX LINE_Penelope 121641 121781 33 - . . . . . -1 -1 -1 . . . scaffold40396 WUBlastX LINE_Penelope 2146 2340 29 - . . scaffold40396 GLEAN mRNA 2119 27704 0.990545 - . ID=CGI_10004066; scaffold1322 WUBlastX DNA_P 477702 477905 48 - . . scaffold1322 GLEAN mRNA 469090 478831 0.810694 - . ID=CGI_10019482; scaffold1322 WUBlastX DNA_P 478325 478363 21 - . . scaffold1322 GLEAN mRNA 469090 478831 0.810694 - . ID=CGI_10019482; scaffold43782 WUBlastX LINE_L1 170438 171034 22 + . . . . . -1 -1 -1 . . . scaffold276 WUBlastX DNA_P 29685 29957 45 - . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold1138 WUBlastX DNA_P 191003 191308 44 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 191003 191308 44 + . . scaffold1138 GLEAN mRNA 186841 191383 0.716431 + . ID=CGI_10015374; scaffold39268 WUBlastX DNA_MuDR 63731 63985 64 + . . scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold1154 WUBlastX DNA_MuDR 400618 400827 20 - . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold43954 WUBlastX DNA_MuDR 334817 335170 49 + . . scaffold43954 GLEAN mRNA 334847 335729 0.999507 + . ID=CGI_10014586; scaffold332 WUBlastX LINE_Penelope 506949 507182 28 - . . . . . -1 -1 -1 . . . scaffold1792 WUBlastX LINE_Penelope 69486 69620 35 + . . scaffold1792 GLEAN mRNA 55871 124119 0.789251 - . ID=CGI_10012744; scaffold1024 WUBlastX LINE_Penelope 994725 994883 28 - . . . . . -1 -1 -1 . . . scaffold177 WUBlastX LINE_Penelope 76820 77047 25 - . . . . . -1 -1 -1 . . . scaffold292 WUBlastX LINE_R1 8050 8169 25 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold1174 WUBlastX LINE_LOA 141051 141251 27 - . . scaffold1174 GLEAN mRNA 122742 144408 0.527772 + . ID=CGI_10026027; scaffold433 WUBlastX LINE_L1 1244286 1244723 46 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_L2 84939 85043 51 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LINE_L2 116951 117262 39 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX DNA_TcMar-Marin 174808 175002 63 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Ngaro 1564944 1565075 33 - . . . . . -1 -1 -1 . . . scaffold43026 WUBlastX DNA_TcMar-Tc1 20930 21061 25 - . . . . . -1 -1 -1 . . . scaffold324 WUBlastX DNA_TcMar-Tc1 254709 254819 55 + . . . . . -1 -1 -1 . . . scaffold1707 WUBlastX DNA_TcMar-Tc1 1840 1986 72 - . . scaffold1707 GLEAN mRNA 1527 2835 0.999999 - . ID=CGI_10009945; scaffold1860 WUBlastX LINE_Penelope 354827 355231 33 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_Penelope 348365 348661 51 - . . . . . -1 -1 -1 . . . scaffold33876 WUBlastX LINE_Penelope 6537 6926 39 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LINE_RTE-BovB 1139599 1139739 66 - . . scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold44 WUBlastX LINE_RTE-X 388386 388574 68 + . . scaffold44 GLEAN mRNA 377498 394536 0.863441 - . ID=CGI_10016839; scaffold388 WUBlastX LINE_RTE-X 220613 220750 53 - . . scaffold388 GLEAN mRNA 216874 221663 0.662264 - . ID=CGI_10020466; scaffold388 WUBlastX LINE_RTE-X 220613 220750 53 - . . scaffold388 GLEAN mRNA 211826 226750 0.996237 + . ID=CGI_10020465; scaffold1872 WUBlastX LINE_RTE-X 77759 78025 31 - . . . . . -1 -1 -1 . . . scaffold1812 WUBlastX LINE_RTE-X 37488 37598 62 - . . scaffold1812 GLEAN mRNA 18505 39381 0.997673 - . ID=CGI_10004688; scaffold385 WUBlastX LINE_RTE-X 218294 218449 23 + . . . . . -1 -1 -1 . . . scaffold43340 WUBlastX LINE_RTE-X 100758 101030 24 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_RTE-X 170013 170150 31 - . . scaffold365 GLEAN mRNA 162342 187868 0.996603 - . ID=CGI_10022722; scaffold139 WUBlastX LINE_RTE-X 75572 75757 21 + . . . . . -1 -1 -1 . . . scaffold1890 WUBlastX LINE_RTE-X 226332 226433 41 + . . . . . -1 -1 -1 . . . scaffold29846 WUBlastX LINE_RTE-X 3765 3863 36 + . . . . . -1 -1 -1 . . . scaffold1855 WUBlastX LINE_RTE-X 205603 205668 21 - . . scaffold1855 GLEAN mRNA 188156 207855 0.999324 - . ID=CGI_10008876; scaffold4 WUBlastX LINE_RTE-X 676715 676840 20 + . . . . . -1 -1 -1 . . . scaffold43130 WUBlastX LINE_RTE-X 211217 211435 57 - . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LINE_RTE-X 70543 70845 67 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX LINE_RTE-BovB 203560 203631 32 - . . scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold585 WUBlastX LINE_RTE-BovB 106833 107093 77 + . . scaffold585 GLEAN mRNA 91313 107443 0.999351 - . ID=CGI_10005541; scaffold1749 WUBlastX LINE_RTE-BovB 73770 74156 43 - . . . . . -1 -1 -1 . . . scaffold413 WUBlastX LINE_RTE-BovB 161422 161556 45 - . . . . . -1 -1 -1 . . . scaffold1880 WUBlastX LINE_RTE-BovB 188779 188880 37 - . . . . . -1 -1 -1 . . . scaffold923 WUBlastX LINE_RTE-X 38205 38474 22 + . . . . . -1 -1 -1 . . . scaffold1004 WUBlastX LINE_RTE-X 339849 340100 51 - . . . . . -1 -1 -1 . . . scaffold41766 WUBlastX LINE_RTE-X 114066 114431 23 + . . . . . -1 -1 -1 . . . scaffold1650 WUBlastX LINE_RTE-X 664 738 25 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 176634 176696 20 + . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LINE_RTE-X 199079 199201 65 - . . . . . -1 -1 -1 . . . scaffold973 WUBlastX LINE_RTE-X 111634 112071 25 - . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX LINE_RTE-X 864196 864333 50 + . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX DNA_PiggyBac 18440 18526 23 - . . . . . -1 -1 -1 . . . scaffold1747 WUBlastX DNA_PiggyBac 42719 42883 36 + . . scaffold1747 GLEAN mRNA 42461 42907 1 + . ID=CGI_10004400; scaffold343 WUBlastX DNA_Maverick 643748 643999 45 - . . scaffold343 GLEAN mRNA 643952 644134 0.514976 + . ID=CGI_10021772; scaffold343 WUBlastX DNA_Maverick 643748 643999 45 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold1895 WUBlastX DNA_PiggyBac 34430 34687 37 - . . scaffold1895 GLEAN mRNA 10144 35398 0.383689 - . ID=CGI_10010969; scaffold40442 WUBlastX DNA_PiggyBac 88360 88449 26 + . . . . . -1 -1 -1 . . . scaffold42302 WUBlastX DNA_PiggyBac 39965 40162 26 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_Maverick 17526 17720 48 - . . . . . -1 -1 -1 . . . scaffold351 WUBlastX DNA_Maverick 287221 287733 55 - . . . . . -1 -1 -1 . . . C29774 WUBlastX LINE_Proto2 206 418 49 - . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_Proto2 204976 205521 28 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LINE_Proto2 291884 292267 32 + . . scaffold1865 GLEAN mRNA 265949 318343 0.640148 - . ID=CGI_10013547; scaffold784 WUBlastX LINE_Proto2 304153 304299 26 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold43076 WUBlastX LINE_R2 84996 85235 67 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX LINE_Rex-Babar 606339 606428 27 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LTR_Gypsy 719472 719555 20 - . . scaffold1132 GLEAN mRNA 715893 721077 0.813716 - . ID=CGI_10023330; scaffold1009 WUBlastX LINE_RTE-BovB 803038 803106 24 - . . scaffold1009 GLEAN mRNA 796284 807727 0.387799 - . ID=CGI_10028763; scaffold1009 WUBlastX LINE_RTE-BovB 803038 803106 24 - . . scaffold1009 GLEAN mRNA 802465 805561 0.994697 + . ID=CGI_10028764; scaffold511 WUBlastX LINE_RTE-BovB 14946 15008 42 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_RTE-X 970049 970102 33 + . . scaffold1583 GLEAN mRNA 953169 980453 0.999949 + . ID=CGI_10025857; scaffold42198 WUBlastX LINE_RTE-BovB 65206 65490 27 + . . scaffold42198 GLEAN mRNA 65263 65511 0.481188 + . ID=CGI_10006393; scaffold1767 WUBlastX LINE_RTE-BovB 221424 221861 50 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_RTE-X 831417 831635 24 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_RTE-X 736306 736461 44 - . . . . . -1 -1 -1 . . . scaffold41356 WUBlastX LINE_RTE-X 52369 52623 41 - . . scaffold41356 GLEAN mRNA 23583 56717 0.908715 - . ID=CGI_10004994; scaffold41356 WUBlastX LINE_RTE-X 52369 52623 41 - . . scaffold41356 GLEAN mRNA 49810 66673 0.811456 + . ID=CGI_10004995; scaffold392 WUBlastX LINE_RTE-X 293468 293737 61 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 195180 195335 48 - . . scaffold1322 GLEAN mRNA 192179 204571 0.871492 + . ID=CGI_10019467; scaffold483 WUBlastX LINE_RTE-X 160777 160947 41 - . . scaffold483 GLEAN mRNA 152695 165153 0.98402 - . ID=CGI_10007752; scaffold453 WUBlastX LINE_RTE-X 190865 191272 47 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 598007 598489 35 - . . . . . -1 -1 -1 . . . scaffold461 WUBlastX LTR_Gypsy 598488 598550 23 - . . . . . -1 -1 -1 . . . scaffold1179 WUBlastX LTR_DIRS 922387 922530 50 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LTR_Ngaro 763399 763746 24 - . . . . . -1 -1 -1 . . . scaffold41550 WUBlastX LINE_RTE-X 24523 24603 26 - . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX DNA_Sola 907 1020 42 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX DNA_Sola 43594 43965 22 - . . . . . -1 -1 -1 . . . scaffold443 WUBlastX DNA_Sola 445070 445234 36 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX DNA_Sola 445589 445768 26 + . . . . . -1 -1 -1 . . . scaffold389 WUBlastX DNA_TcMar-Marin 78947 79144 44 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L1-Tx1 538534 538602 20 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L1-Tx1 633270 633497 29 - . . . . . -1 -1 -1 . . . scaffold724 WUBlastX LINE_L1-Tx1 239280 239423 27 + . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_L1-Tx1 444632 444757 43 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1-Tx1 1230587 1230766 40 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1-Tx1 363433 363633 26 - . . . . . -1 -1 -1 . . . C137 WUBlastX LTR_Gypsy-Cigr 2 100 58 - . . . . . -1 -1 -1 . . . scaffold557 WUBlastX DNA_TcMar-Tigge 400312 400563 51 + . . . . . -1 -1 -1 . . . scaffold41174 WUBlastX LINE_DRE 68925 69392 34 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold35238 WUBlastX LINE_L1-Tx1 1841 2050 28 - . . . . . -1 -1 -1 . . . scaffold775 WUBlastX LINE_L1-Tx1 133151 133417 38 + . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_L1-Tx1 547805 547993 28 - . . scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold794 WUBlastX LINE_L1-Tx1 361058 361312 29 + . . . . . -1 -1 -1 . . . scaffold247 WUBlastX DNA_TcMar-Tc1 6681 6938 40 - . . . . . -1 -1 -1 . . . scaffold42866 WUBlastX LTR_Pao 5031 5417 64 - . . scaffold42866 GLEAN mRNA 4204 26490 0.99967 + . ID=CGI_10007989; scaffold43200 WUBlastX DNA_TcMar-Tc1 177584 177922 42 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_TcMar-Tc1 210308 210565 64 - . . . . . -1 -1 -1 . . . scaffold807 WUBlastX LTR_Gypsy 65835 66284 21 + . . . . . -1 -1 -1 . . . scaffold1066 WUBlastX LINE_CR1-L2 44217 44327 34 - . . . . . -1 -1 -1 . . . scaffold488 WUBlastX LTR_Copia 87887 88090 34 - . . scaffold488 GLEAN mRNA 87554 88225 1 - . ID=CGI_10005409; scaffold685 WUBlastX LTR_DIRS 79022 79336 58 + . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LTR_Gypsy 263221 263388 75 + . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LTR_Gypsy 1676 1747 54 - . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LTR_Gypsy 1005505 1005534 27 - . . . . . -1 -1 -1 . . . scaffold35444 WUBlastX LTR_Gypsy 5725 5934 41 - . . scaffold35444 GLEAN mRNA 591 6430 0.999654 - . ID=CGI_10001555; C34622 WUBlastX DNA_Kolobok-IS4 4848 5273 57 + . . C34622 GLEAN mRNA 5100 5956 0.557561 + . ID=CGI_10001328; scaffold4 WUBlastX RC_Helitron 279403 279714 69 - . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_TcMar-Fot1 271367 271429 23 + . . scaffold43660 GLEAN mRNA 262639 273396 0.998201 - . ID=CGI_10011673; scaffold517 WUBlastX LINE_Penelope 209768 209971 81 - . . scaffold517 GLEAN mRNA 207961 216861 0.317127 - . ID=CGI_10008985; scaffold363 WUBlastX LINE_Penelope 573481 573741 71 - . . scaffold363 GLEAN mRNA 572459 589785 0.839415 + . ID=CGI_10019315; scaffold1785 WUBlastX LINE_L1 20416 21093 45 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold321 WUBlastX DNA_Kolobok-Hyd 491759 491905 32 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX DNA_Kolobok-Hyd 492405 492695 47 + . . . . . -1 -1 -1 . . . scaffold781 WUBlastX LINE_RTE-X 3755 4201 85 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX LINE_RTE-X 156061 156294 44 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Gypsy 747569 747844 72 - . . . . . -1 -1 -1 . . . scaffold922 WUBlastX LINE_CR1-L2 1695 2048 56 - . . . . . -1 -1 -1 . . . scaffold880 WUBlastX LINE_CR1-L2 274260 274394 35 + . . . . . -1 -1 -1 . . . scaffold43054 WUBlastX LINE_L2 11306 11635 37 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 933279 933713 94 - . . scaffold102 GLEAN mRNA 930119 940235 0.678096 - . ID=CGI_10028458; scaffold581 WUBlastX LTR_Gypsy 206961 207161 49 + . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LINE_L1 53778 54236 47 - . . . . . -1 -1 -1 . . . scaffold29534 WUBlastX LINE_L1 1208 1834 30 + . . scaffold29534 GLEAN mRNA 32 6456 1 - . ID=CGI_10000544; scaffold35806 WUBlastX LINE_L1-Tx1 26307 26519 66 - . . . . . -1 -1 -1 . . . scaffold40246 WUBlastX DNA_hAT-Tip100 26019 26282 93 - . . scaffold40246 GLEAN mRNA 25998 27045 0.997233 - . ID=CGI_10003986; scaffold145 WUBlastX DNA_Crypton 642933 643199 88 - . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; C32888 WUBlastX DNA_Kolobok-IS4 10548 10838 68 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LTR_Gypsy 263803 264162 89 + . . . . . -1 -1 -1 . . . scaffold39220 WUBlastX LINE_RTE-X 49986 50048 55 - . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_Sola 5827 6312 35 - . . scaffold802 GLEAN mRNA 5743 8732 0.999998 - . ID=CGI_10015724; scaffold802 WUBlastX DNA_Sola 6484 6651 66 - . . scaffold802 GLEAN mRNA 5743 8732 0.999998 - . ID=CGI_10015724; C26430 WUBlastX LTR_Gypsy 676 975 138 + . . . . . -1 -1 -1 . . . scaffold39966 WUBlastX LTR_Gypsy 58656 58775 33 - . . . . . -1 -1 -1 . . . scaffold804 WUBlastX LTR_DIRS 118297 118569 74 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_R2 171221 171760 117 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_RTE-X 395426 395515 47 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_RTE-X 395515 395799 27 - . . . . . -1 -1 -1 . . . scaffold1533 WUBlastX LINE_RTE-X 205747 205881 110 - . . . . . -1 -1 -1 . . . scaffold586 WUBlastX LINE_RTE-X 177954 178151 87 - . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold722 WUBlastX LTR_Ngaro 301644 301910 32 - . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX DNA_Harbinger 244867 245028 55 + . . . . . -1 -1 -1 . . . scaffold1581 WUBlastX LINE_L1 1464 1649 63 - . . . . . -1 -1 -1 . . . scaffold180 WUBlastX LINE_Penelope 56522 56806 82 - . . . . . -1 -1 -1 . . . scaffold188 WUBlastX LINE_RTE-X 225399 225572 37 + . . . . . -1 -1 -1 . . . scaffold802 WUBlastX DNA_PiggyBac 29842 30165 34 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 738782 738991 22 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold1860 WUBlastX LTR_DIRS 349013 349402 111 + . . . . . -1 -1 -1 . . . scaffold4 WUBlastX LTR_DIRS 218294 218755 75 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 342864 343247 32 + . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX LINE_L1 42686 42931 126 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LINE_L1-Tx1 294277 294465 80 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_L1-Tx1 92026 92466 42 + . . . . . -1 -1 -1 . . . scaffold40080 WUBlastX LINE_RTE-BovB 24259 24366 44 + . . scaffold40080 GLEAN mRNA 23516 25927 0.997813 - . ID=CGI_10003844; scaffold6 WUBlastX LINE_RTE-X 164759 164968 107 + . . . . . -1 -1 -1 . . . scaffold41388 WUBlastX LTR_Ngaro 99625 100158 94 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX DNA_Harbinger 137118 137426 111 + . . . . . -1 -1 -1 . . . scaffold41598 WUBlastX DNA_hAT-Tip100 73493 73783 148 - . . scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold1142 WUBlastX LINE_L1 27897 28544 108 + . . scaffold1142 GLEAN mRNA 17099 55959 0.998343 + . ID=CGI_10008525; scaffold1054 WUBlastX LINE_L1 28239 28886 108 + . . . . . -1 -1 -1 . . . scaffold1860 WUBlastX LINE_L1-Tx1 244835 245068 71 + . . . . . -1 -1 -1 . . . scaffold43986 WUBlastX LINE_Penelope 369306 369542 52 - . . . . . -1 -1 -1 . . . scaffold43702 WUBlastX LINE_RTE-X 207392 207928 115 + . . . . . -1 -1 -1 . . . scaffold33832 WUBlastX LTR_Ngaro 5072 5407 101 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LTR_Ngaro 1261973 1262425 132 - . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LTR_Ngaro 21132 21665 127 - . . scaffold1854 GLEAN mRNA 10780 21821 0.727692 - . ID=CGI_10004409; scaffold1643 WUBlastX LTR_Ngaro 185699 186046 156 - . . . . . -1 -1 -1 . . . scaffold453 WUBlastX DNA_Kolobok 302798 302929 79 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Kolobok 303045 303176 78 - . . scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold42450 WUBlastX LINE_L1-Tx1 126212 126616 52 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_hAT-Tip100 77680 78042 121 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_hAT-Tip100 78119 79339 570 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_hAT-Tip100 80141 80371 173 + . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LTR_Gypsy-Cigr 123026 124630 453 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LTR_Gypsy-Cigr 124638 125252 535 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_L1 149501 149941 23 + . . . . . -1 -1 -1 . . . scaffold1766 WUBlastX LINE_L1 109769 110950 51 - . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_TcMar-Fot1 271095 271646 166 - . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; C27830 WUBlastX LINE_RTE-X 4249 4395 25 + . . . . . -1 -1 -1 . . . C27830 WUBlastX LINE_RTE-X 4368 4997 32 + . . . . . -1 -1 -1 . . . scaffold29334 WUBlastX LINE_RTE-X 4299 4622 105 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_TcMar-Tc1 786702 786836 46 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LINE_L2 29571 30962 1002 - . . . . . -1 -1 -1 . . . scaffold676 WUBlastX DNA_Crypton 352350 352730 96 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LTR_Gypsy 596025 596753 148 - . . . . . -1 -1 -1 . . . scaffold140 WUBlastX LINE_RTE-X 95614 95919 62 + . . . . . -1 -1 -1 . . . scaffold588 WUBlastX LINE_RTE-X 6493 6639 71 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 587247 587771 115 - . . . . . -1 -1 -1 . . . scaffold1635 WUBlastX DNA_TcMar-Tc1 29019 29654 93 + . . . . . -1 -1 -1 . . . scaffold695 WUBlastX LINE_L1-Tx1 88607 88648 27 - . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold29912 WUBlastX LTR_Pao 5949 7142 1147 - . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_Penelope 11743 12570 136 + . . . . . -1 -1 -1 . . . scaffold1569 WUBlastX LINE_Penelope 12555 13202 479 + . . . . . -1 -1 -1 . . . scaffold312 WUBlastX DNA_Maverick 41200 41796 499 - . . . . . -1 -1 -1 . . . scaffold1822 WUBlastX LTR_Gypsy 10581 11936 677 + . . . . . -1 -1 -1 . . . scaffold1822 WUBlastX LTR_Gypsy 11942 12223 197 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy 267422 268084 137 - . . . . . -1 -1 -1 . . . scaffold43616 WUBlastX LINE_L2 198131 199444 60 - . . scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold36866 WUBlastX LTR_DIRS 33515 33895 180 + . . . . . -1 -1 -1 . . . scaffold1448 WUBlastX LINE_RTE-X 245106 245294 98 + . . . . . -1 -1 -1 . . . scaffold1595 WUBlastX LTR_Gypsy 3938 4846 575 - . . . . . -1 -1 -1 . . . scaffold40164 WUBlastX LINE_L1-Tx1 35060 36673 143 - . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LTR_Gypsy 84287 84844 173 + . . . . . -1 -1 -1 . . . scaffold40054 WUBlastX LINE_RTE-X 28055 28759 102 - . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 423501 423992 87 + . . . . . -1 -1 -1 . . . scaffold383 WUBlastX LINE_RTE-X 424525 424572 41 + . . . . . -1 -1 -1 . . . scaffold43664 WUBlastX LTR_Gypsy-Cigr 231507 233633 1374 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_En-Spm 52680 54923 1297 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Gypsy 232432 233130 198 + . . . . . -1 -1 -1 . . . scaffold43278 WUBlastX DNA_hAT-Tip100 80852 80986 59 + . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 586338 587009 161 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_CR1 223930 224184 64 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold980 WUBlastX LINE_RTE-X 165166 165585 124 + . . scaffold980 GLEAN mRNA 163810 172327 0.499535 - . ID=CGI_10019213; scaffold150 WUBlastX DNA_Sola 1270596 1271507 74 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LTR_Gypsy-Cigr 71333 71980 105 + . . . . . -1 -1 -1 . . . scaffold1255 WUBlastX LTR_Gypsy 394310 396277 1302 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; C32054 WUBlastX LTR_ERV1 2325 2456 23 + . . . . . -1 -1 -1 . . . scaffold38784 WUBlastX LTR_Pao 27739 28749 745 + . . . . . -1 -1 -1 . . . scaffold1317 WUBlastX LTR_Pao 73679 74974 994 + . . . . . -1 -1 -1 . . . scaffold39080 WUBlastX LTR_Ngaro 17050 17562 210 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_L1-Tx1 80730 81356 286 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_L1-Tx1 81292 82449 642 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_L1-Tx1 82446 83165 465 + . . . . . -1 -1 -1 . . . scaffold442 WUBlastX LINE_L1-Tx1 83232 83855 154 + . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 15630 16577 829 - . . . . . -1 -1 -1 . . . scaffold38546 WUBlastX LTR_Gypsy 16637 17302 134 - . . . . . -1 -1 -1 . . . scaffold751 WUBlastX DNA_IS4EU 97161 97763 237 - . . . . . -1 -1 -1 . . . scaffold36170 WUBlastX LTR_Gypsy-Cigr 15182 16255 446 + . . . . . -1 -1 -1 . . . scaffold1532 WUBlastX LTR_Gypsy 988711 988866 57 + . . scaffold1532 GLEAN mRNA 980578 997386 0.999875 - . ID=CGI_10028278; scaffold482 WUBlastX LINE_L2 233187 233546 198 - . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX DNA_MuDR 271519 272373 235 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_RTE-BovB 168496 168732 58 + . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_RTE-BovB 168732 169097 171 + . . . . . -1 -1 -1 . . . scaffold43130 WUBlastX LTR_Gypsy 213096 216419 1728 + . . . . . -1 -1 -1 . . . scaffold1730 WUBlastX LINE_RTE-X 215731 216012 176 + . . . . . -1 -1 -1 . . . scaffold177 WUBlastX DNA_Maverick 4377 4766 109 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Gypsy 136400 140419 2193 - . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_CR1 333766 333813 20 + . . scaffold1132 GLEAN mRNA 323455 353252 0.805086 - . ID=CGI_10023315; scaffold1174 WUBlastX LINE_RTE-X 254022 255248 148 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 93918 94022 97 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy 267916 268647 242 + . . . . . -1 -1 -1 . . . scaffold614 WUBlastX LTR_Pao 159162 159287 37 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_Gypsy 318211 318336 71 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LTR_Ngaro 210227 210718 106 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-X 286754 286825 21 - . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_DIRS 406573 407064 315 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_DIRS 128923 129987 244 + . . . . . -1 -1 -1 . . . scaffold524 WUBlastX LINE_CR1-L2 453245 453556 148 - . . scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold591 WUBlastX LTR_Gypsy 228281 228844 210 - . . . . . -1 -1 -1 . . . C35606 WUBlastX DNA_Crypton 492 905 119 - . . . . . -1 -1 -1 . . . C35606 WUBlastX DNA_Crypton 1017 1187 63 - . . . . . -1 -1 -1 . . . C35606 WUBlastX DNA_Crypton 1548 1883 106 - . . . . . -1 -1 -1 . . . scaffold21736 WUBlastX LTR_Gypsy 185 1060 244 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_RTE-X 402384 402626 23 + . . scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold852 WUBlastX DNA_Kolobok-IS4 50373 51098 314 + . . scaffold852 GLEAN mRNA 42591 51134 1 + . ID=CGI_10012033; scaffold852 WUBlastX DNA_Kolobok-IS4 50373 51098 314 + . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold767 WUBlastX LINE_RTE-BovB 14529 14864 113 - . . . . . -1 -1 -1 . . . scaffold1843 WUBlastX LTR_Pao 95332 95451 25 + . . . . . -1 -1 -1 . . . scaffold870 WUBlastX DNA_hAT 49590 49703 79 + . . scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold925 WUBlastX LTR_DIRS 440751 441569 216 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; C30752 WUBlastX LINE_RTE-X 8 178 46 - . . . . . -1 -1 -1 . . . C30752 WUBlastX LINE_RTE-X 669 1595 249 - . . . . . -1 -1 -1 . . . scaffold667 WUBlastX LTR_Gypsy 91189 91704 136 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79107 79217 65 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79346 79468 28 - . . . . . -1 -1 -1 . . . scaffold1402 WUBlastX LTR_Ngaro 437446 437925 265 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX DNA_Kolobok-IS4 9310 10338 250 + . . scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold209 WUBlastX DNA_hAT-Tip100 258410 258613 40 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 258595 258627 21 - . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; C33864 WUBlastX RC_Helitron 3 1376 359 + . . . . . -1 -1 -1 . . . scaffold145 WUBlastX LTR_Gypsy-Cigr 801272 801454 80 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LINE_RTE-BovB 1012653 1012772 20 + . . . . . -1 -1 -1 . . . scaffold1241 WUBlastX LINE_L2 200346 201251 299 - . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 598747 599166 58 + . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_L1-Tx1 55490 55891 88 - . . . . . -1 -1 -1 . . . scaffold40586 WUBlastX LINE_L1-Tx1 55990 57036 254 - . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX LINE_L1-Tx1 420212 420832 211 + . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold194 WUBlastX RC_Helitron 238692 239630 468 + . . . . . -1 -1 -1 . . . scaffold324 WUBlastX LINE_L1-Tx1 362646 363977 208 + . . . . . -1 -1 -1 . . . scaffold1733 WUBlastX LINE_L1 220588 221841 358 - . . . . . -1 -1 -1 . . . scaffold90 WUBlastX DNA_hAT-Tip100 398040 398618 42 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 398724 398954 128 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 399186 399707 258 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 399715 400035 56 - . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold243 WUBlastX LTR_Gypsy-Cigr 117632 119119 380 - . . scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; C31724 WUBlastX LTR_Gypsy 7503 8495 460 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1-Tx1 866929 867276 89 - . . . . . -1 -1 -1 . . . scaffold419 WUBlastX LINE_L1-Tx1 867934 868362 172 - . . . . . -1 -1 -1 . . . scaffold1164 WUBlastX LINE_RTE-X 8312 8596 182 + . . . . . -1 -1 -1 . . . scaffold1017 WUBlastX LTR_Gypsy-Cigr 629241 629861 111 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LTR_Ngaro 709966 710082 28 - . . . . . -1 -1 -1 . . . scaffold37900 WUBlastX DNA_IS4EU 29087 29287 20 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold20 WUBlastX LINE_L1-Tx1 241373 241660 203 - . . . . . -1 -1 -1 . . . scaffold924 WUBlastX LTR_Gypsy 135134 135691 364 - . . . . . -1 -1 -1 . . . scaffold1756 WUBlastX LINE_RTE-X 14818 15336 116 + . . . . . -1 -1 -1 . . . scaffold128 WUBlastX LINE_RTE-X 191192 191296 39 + . . . . . -1 -1 -1 . . . scaffold38284 WUBlastX LTR_Gypsy 31338 32048 63 - . . . . . -1 -1 -1 . . . scaffold501 WUBlastX LINE_RTE-X 588398 588916 98 - . . . . . -1 -1 -1 . . . scaffold410 WUBlastX LINE_CR1 488713 489117 104 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_L1-Tx1 1228174 1228344 28 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-BovB 461103 461612 404 - . . . . . -1 -1 -1 . . . scaffold332 WUBlastX LINE_RTE-BovB 461597 461968 235 - . . . . . -1 -1 -1 . . . scaffold1 WUBlastX LINE_L1-Tx1 113283 114629 434 - . . . . . -1 -1 -1 . . . scaffold43122 WUBlastX LTR_Ngaro 76781 77185 311 + . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_CR1-L2 511810 511959 27 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold1077 WUBlastX LTR_Gypsy 489370 490047 30 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX LTR_Pao 219243 221297 718 - . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Pao 48061 48450 278 - . . . . . -1 -1 -1 . . . scaffold1854 WUBlastX LINE_L2 3886 4533 202 + . . . . . -1 -1 -1 . . . scaffold400 WUBlastX LINE_CR1-L2 265025 265621 461 - . . scaffold400 GLEAN mRNA 262709 267661 0.544852 - . ID=CGI_10011440; scaffold895 WUBlastX LINE_RTE-BovB 111155 112477 432 - . . . . . -1 -1 -1 . . . scaffold895 WUBlastX LINE_RTE-BovB 112395 112973 347 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 301332 301697 290 - . . . . . -1 -1 -1 . . . scaffold535 WUBlastX LTR_Gypsy 302263 302538 134 - . . . . . -1 -1 -1 . . . scaffold1898 WUBlastX LTR_Pao 310587 310769 21 - . . scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold396 WUBlastX LTR_Gypsy 211643 212752 121 - . . . . . -1 -1 -1 . . . scaffold376 WUBlastX LTR_Gypsy 417288 417782 185 + . . . . . -1 -1 -1 . . . scaffold1838 WUBlastX LINE_CR1 16120 16194 23 - . . . . . -1 -1 -1 . . . scaffold1838 WUBlastX LINE_CR1 16211 16444 49 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LTR_Lenti 180162 180308 23 + . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LTR_Copia 109754 110149 26 + . . scaffold458 GLEAN mRNA 105247 110866 0.999785 + . ID=CGI_10013589; scaffold186 WUBlastX LTR_Pao 294263 294385 32 + . . . . . -1 -1 -1 . . . scaffold43538 WUBlastX LINE_L2 228069 228254 20 + . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LINE_CR1 181653 181712 37 - . . . . . -1 -1 -1 . . . scaffold622 WUBlastX LINE_L2 190661 191101 27 + . . . . . -1 -1 -1 . . . C34200 WUBlastX LINE_L2 2447 2794 23 - . . . . . -1 -1 -1 . . . scaffold1875 WUBlastX LINE_CR1-L2 144025 144279 57 + . . scaffold1875 GLEAN mRNA 111643 144172 0.998262 + . ID=CGI_10006630; scaffold43742 WUBlastX LINE_CR1 58046 58189 24 - . . . . . -1 -1 -1 . . . scaffold632 WUBlastX LINE_CR1 482773 482964 63 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold43954 WUBlastX LINE_CR1 146642 146842 40 + . . scaffold43954 GLEAN mRNA 139153 149832 0.999998 - . ID=CGI_10014576; C35952 WUBlastX LINE_L2 2310 2672 52 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; C35260 WUBlastX LINE_L2 1370 1540 59 + . . . . . -1 -1 -1 . . . scaffold443 WUBlastX LTR_Gypsy 114362 114964 59 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LTR_Gypsy 655146 655253 23 + . . . . . -1 -1 -1 . . . scaffold1608 WUBlastX LTR_Gypsy 134350 134457 20 + . . scaffold1608 GLEAN mRNA 108771 134587 0.737683 + . ID=CGI_10010678; scaffold1132 WUBlastX LTR_Gypsy 718758 719291 28 - . . scaffold1132 GLEAN mRNA 715893 721077 0.813716 - . ID=CGI_10023330; scaffold262 WUBlastX LTR_Gypsy 18595 18939 69 + . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LTR_Gypsy 592107 592385 67 + . . scaffold1307 GLEAN mRNA 586550 596673 0.992394 + . ID=CGI_10023769; scaffold70 WUBlastX LTR_Gypsy 5711 5899 28 - . . . . . -1 -1 -1 . . . scaffold40076 WUBlastX DNA_Harbinger 74514 74693 47 - . . . . . -1 -1 -1 . . . scaffold354 WUBlastX DNA_Harbinger 956758 956970 69 - . . . . . -1 -1 -1 . . . scaffold40412 WUBlastX DNA_Harbinger 7174 7386 69 + . . scaffold40412 GLEAN mRNA 4188 16676 0.991013 - . ID=CGI_10004112; scaffold40196 WUBlastX DNA_IS4EU 58371 58592 38 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX RC_Helitron 354265 354336 22 + . . . . . -1 -1 -1 . . . scaffold1743 WUBlastX DNA_hAT-hATw 271146 271349 36 - . . . . . -1 -1 -1 . . . scaffold1749 WUBlastX LINE_Penelope 72310 72606 52 + . . . . . -1 -1 -1 . . . scaffold43920 WUBlastX DNA_TcMar-Tc1 260886 261035 56 + . . scaffold43920 GLEAN mRNA 253407 262803 0.999991 + . ID=CGI_10013995; scaffold394 WUBlastX DNA_TcMar-Fot1 78979 79044 33 + . . . . . -1 -1 -1 . . . scaffold816 WUBlastX DNA_TcMar-Tigge 283318 283434 25 - . . . . . -1 -1 -1 . . . C24814 WUBlastX LINE_L1-Tx1 1166 1288 70 - . . . . . -1 -1 -1 . . . scaffold1805 WUBlastX LINE_L1 315804 315980 72 - . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_RTE-X 267513 267695 30 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold253 WUBlastX LINE_RTE-X 51208 51330 50 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_RTE-BovB 95619 95738 87 - . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_Maverick 279368 279508 92 + . . . . . -1 -1 -1 . . . scaffold1866 WUBlastX LINE_RTE-X 470588 470845 53 - . . . . . -1 -1 -1 . . . scaffold70 WUBlastX LINE_RTE-X 610017 610199 24 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold42904 WUBlastX LINE_RTE-X 103388 103537 35 + . . scaffold42904 GLEAN mRNA 87880 118208 0.944676 - . ID=CGI_10008103; scaffold41560 WUBlastX LINE_RTE-X 110121 110315 21 + . . scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold1797 WUBlastX DNA_TcMar-Marin 55381 55695 32 - . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX LINE_L1-Tx1 125299 125391 47 - . . . . . -1 -1 -1 . . . scaffold998 WUBlastX LTR_Gypsy 146840 147142 61 - . . . . . -1 -1 -1 . . . scaffold42726 WUBlastX DNA_TcMar-Tc1 160597 160731 40 + . . . . . -1 -1 -1 . . . scaffold41470 WUBlastX DNA_TcMar-Tc1 105152 105433 25 + . . . . . -1 -1 -1 . . . scaffold236 WUBlastX LINE_L2 413692 413808 25 - . . . . . -1 -1 -1 . . . scaffold1449 WUBlastX LINE_L2 171618 171977 57 - . . . . . -1 -1 -1 . . . scaffold930 WUBlastX LINE_CR1-L2 252556 252633 20 + . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_CR1-L2 155400 155852 20 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_CR1-L2 104068 104169 34 + . . . . . -1 -1 -1 . . . scaffold1245 WUBlastX LINE_CR1-L2 18826 18927 34 + . . scaffold1245 GLEAN mRNA 8846 27165 0.999947 - . ID=CGI_10009218; scaffold41530 WUBlastX LINE_CR1 8672 8761 41 + . . . . . -1 -1 -1 . . . scaffold1869 WUBlastX DNA_PiggyBac 175768 175899 68 + . . . . . -1 -1 -1 . . . scaffold839 WUBlastX LTR_Copia 94011 94439 23 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LTR_Copia 129906 130013 32 - . . scaffold967 GLEAN mRNA 127443 132839 0.997345 + . ID=CGI_10015454; scaffold1000 WUBlastX DNA_hAT-Ac 256832 257185 44 + . . scaffold1000 GLEAN mRNA 254688 266328 0.650465 + . ID=CGI_10013084; scaffold809 WUBlastX LTR_Gypsy 54554 54628 43 + . . . . . -1 -1 -1 . . . scaffold809 WUBlastX LTR_Gypsy 54738 55037 34 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LTR_Gypsy 819862 820143 62 - . . . . . -1 -1 -1 . . . C35952 WUBlastX LINE_L2 2481 2780 45 + . . C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; scaffold44008 WUBlastX LINE_L2 180765 180956 27 - . . scaffold44008 GLEAN mRNA 176056 181412 0.761228 - . ID=CGI_10015290; scaffold1402 WUBlastX LTR_DIRS 139137 139283 41 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LTR_Gypsy 613633 614091 47 - . . . . . -1 -1 -1 . . . scaffold583 WUBlastX LTR_Gypsy 279015 279473 47 + . . . . . -1 -1 -1 . . . scaffold43660 WUBlastX DNA_Harbinger 93326 93706 30 + . . scaffold43660 GLEAN mRNA 93442 94483 0.96423 + . ID=CGI_10011662; scaffold43660 WUBlastX DNA_Harbinger 93326 93706 30 + . . scaffold43660 GLEAN mRNA 73296 94423 0.650662 - . ID=CGI_10011661; scaffold4 WUBlastX RC_Helitron 279251 279406 22 - . . . . . -1 -1 -1 . . . scaffold42144 WUBlastX DNA_TcMar-Marin 108183 108281 20 + . . scaffold42144 GLEAN mRNA 104437 125325 0.993907 - . ID=CGI_10006248; scaffold847 WUBlastX DNA_Kolobok-IS4 670904 671050 23 + . . . . . -1 -1 -1 . . . scaffold847 WUBlastX DNA_Kolobok-IS4 671517 671588 33 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX DNA_Harbinger 633715 633858 58 + . . scaffold149 GLEAN mRNA 633695 633907 0.618058 + . ID=CGI_10025313; scaffold138 WUBlastX DNA_Harbinger 200414 200593 43 + . . . . . -1 -1 -1 . . . scaffold1262 WUBlastX LTR_Gypsy 538928 539110 50 + . . scaffold1262 GLEAN mRNA 536759 542214 1 + . ID=CGI_10018959; scaffold107 WUBlastX LTR_Gypsy 748729 748839 27 - . . . . . -1 -1 -1 . . . scaffold911 WUBlastX LTR_Gypsy 98128 98241 28 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold513 WUBlastX LINE_L1 356307 356600 20 + . . scaffold513 GLEAN mRNA 355722 357536 0.999999 + . ID=CGI_10022151; scaffold655 WUBlastX DNA_Kolobok-Hyd 203222 203638 36 + . . scaffold655 GLEAN mRNA 202486 204862 0.819461 + . ID=CGI_10014950; scaffold955 WUBlastX DNA_Kolobok-Hyd 193665 194081 36 + . . scaffold955 GLEAN mRNA 186096 195305 0.45779 + . ID=CGI_10009857; scaffold1427 WUBlastX DNA_TcMar-Marin 37082 37303 55 - . . . . . -1 -1 -1 . . . scaffold854 WUBlastX LTR_Ngaro 184788 184916 53 - . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX DNA_P 186408 186623 65 - . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold305 WUBlastX LINE_Penelope 113296 113523 43 - . . . . . -1 -1 -1 . . . scaffold39972 WUBlastX LINE_RTE-X 39460 39948 38 + . . scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold77 WUBlastX LINE_RTE-X 1249170 1249331 32 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_RTE-X 347141 347338 25 + . . . . . -1 -1 -1 . . . scaffold12 WUBlastX LINE_R1 210924 211061 31 - . . . . . -1 -1 -1 . . . scaffold1699 WUBlastX LINE_RTE-X 17055 17216 33 + . . . . . -1 -1 -1 . . . scaffold40606 WUBlastX DNA_TcMar-Marin 43490 43921 22 + . . . . . -1 -1 -1 . . . scaffold42022 WUBlastX DNA_TcMar-Tigge 113071 113187 33 + . . . . . -1 -1 -1 . . . scaffold736 WUBlastX LTR_Copia 44522 44551 20 - . . . . . -1 -1 -1 . . . scaffold485 WUBlastX LINE_L1-Tx1 879186 879296 39 - . . . . . -1 -1 -1 . . . scaffold1295 WUBlastX LTR_Copia 2769 2855 28 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Copia 82558 82644 28 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_hAT-Tip100 110655 110912 48 - . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LTR_Copia 674639 674794 25 + . . . . . -1 -1 -1 . . . scaffold91 WUBlastX LTR_Copia 47016 47171 25 - . . . . . -1 -1 -1 . . . scaffold37880 WUBlastX LTR_Copia 36707 37048 41 + . . scaffold37880 GLEAN mRNA 36587 37120 0.99998 + . ID=CGI_10002539; scaffold37880 WUBlastX LTR_Copia 36707 37048 41 + . . scaffold37880 GLEAN mRNA 32540 47810 0.54365 - . ID=CGI_10002538; scaffold1009 WUBlastX LINE_RTE-RTE 1403774 1403941 49 - . . scaffold1009 GLEAN mRNA 1385958 1409839 0.363333 + . ID=CGI_10028796; scaffold100 WUBlastX LTR_Pao 1098581 1098691 21 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_CR1-L2 125495 125833 48 - . . . . . -1 -1 -1 . . . scaffold492 WUBlastX LINE_CR1-L2 162591 162986 37 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX LINE_L2 84557 84949 22 - . . scaffold1554 GLEAN mRNA 84456 84665 0.999372 - . ID=CGI_10017358; scaffold309 WUBlastX LINE_L2 178525 178770 45 - . . scaffold309 GLEAN mRNA 178045 179781 0.835602 - . ID=CGI_10007938; scaffold43538 WUBlastX LINE_L2 228317 228805 25 + . . . . . -1 -1 -1 . . . scaffold396 WUBlastX LINE_CR1 204347 204706 58 + . . scaffold396 GLEAN mRNA 196799 208805 0.948886 - . ID=CGI_10018103; scaffold168 WUBlastX LINE_L2 976254 976505 52 + . . . . . -1 -1 -1 . . . scaffold828 WUBlastX LINE_L2 53762 54010 43 + . . scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold501 WUBlastX LTR_Gypsy 1300523 1301125 23 + . . . . . -1 -1 -1 . . . scaffold950 WUBlastX LTR_DIRS 120966 121109 77 - . . scaffold950 GLEAN mRNA 120921 143232 0.996917 + . ID=CGI_10022921; scaffold1824 WUBlastX LINE_L2 100372 100596 40 - . . . . . -1 -1 -1 . . . C7323 WUBlastX LTR_DIRS 3 128 73 + . . . . . -1 -1 -1 . . . scaffold445 WUBlastX LTR_Gypsy-Cigr 321093 321467 39 - . . scaffold445 GLEAN mRNA 299978 341164 0.811094 - . ID=CGI_10019444; scaffold1827 WUBlastX LTR_Gypsy 51088 51309 53 - . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LTR_Gypsy 1095900 1096169 66 + . . scaffold102 GLEAN mRNA 1095942 1101722 0.998596 + . ID=CGI_10028470; scaffold67 WUBlastX LTR_Gypsy 398106 398288 23 - . . scaffold67 GLEAN mRNA 389741 401939 0.990037 + . ID=CGI_10018273; scaffold139 WUBlastX DNA_Kolobok-IS4 50883 51011 25 + . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_IS4EU 169979 170581 23 + . . . . . -1 -1 -1 . . . scaffold804 WUBlastX DNA_Harbinger 139666 139890 46 - . . . . . -1 -1 -1 . . . scaffold440 WUBlastX DNA_hAT-Tip100? 121221 121661 44 - . . . . . -1 -1 -1 . . . scaffold1849 WUBlastX DNA 141446 141559 22 - . . . . . -1 -1 -1 . . . scaffold42086 WUBlastX LINE_RTE-BovB 131919 132068 79 + . . scaffold42086 GLEAN mRNA 132031 141843 0.997945 - . ID=CGI_10006074; scaffold38510 WUBlastX DNA_TcMar-Tc1 20678 20854 22 - . . scaffold38510 GLEAN mRNA 7470 20879 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20678 20854 22 - . . scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold1624 WUBlastX LINE_Penelope 94208 94351 43 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 264598 264942 39 - . . . . . -1 -1 -1 . . . scaffold31 WUBlastX LINE_Penelope 268239 268583 39 + . . . . . -1 -1 -1 . . . scaffold786 WUBlastX LINE_Penelope 224696 224971 31 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_Penelope 25616 26074 22 - . . . . . -1 -1 -1 . . . scaffold13 WUBlastX LINE_Penelope 126592 126987 33 + . . scaffold13 GLEAN mRNA 121736 127612 0.999992 + . ID=CGI_10013204; scaffold144 WUBlastX DNA_TcMar-Marin 11569 11781 65 - . . . . . -1 -1 -1 . . . scaffold43522 WUBlastX LINE_L1 102908 102997 22 - . . scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold1132 WUBlastX LINE_R2 424299 424394 25 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold927 WUBlastX DNA_TcMar-Marin 7134 7553 36 + . . . . . -1 -1 -1 . . . scaffold152 WUBlastX DNA_Kolobok 382758 383429 42 + . . . . . -1 -1 -1 . . . scaffold365 WUBlastX DNA_Kolobok-Hyd 581478 581558 22 - . . scaffold365 GLEAN mRNA 570241 589384 0.479657 + . ID=CGI_10022743; scaffold41398 WUBlastX LINE_L1-Tx1 50508 50807 40 - . . . . . -1 -1 -1 . . . scaffold479 WUBlastX DNA_Maverick 410313 410618 53 - . . . . . -1 -1 -1 . . . scaffold219 WUBlastX LINE_Proto2 398291 398500 70 + . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX DNA_Maverick 30407 30730 52 - . . . . . -1 -1 -1 . . . scaffold41086 WUBlastX DNA_Maverick 69709 69819 55 + . . . . . -1 -1 -1 . . . scaffold1747 WUBlastX DNA_PiggyBac 44249 44308 37 + . . . . . -1 -1 -1 . . . scaffold35070 WUBlastX DNA_PiggyBac 10553 10696 63 + . . . . . -1 -1 -1 . . . scaffold268 WUBlastX LINE_RTE-X 67753 68154 50 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LINE_RTE-X 1240805 1240993 31 + . . . . . -1 -1 -1 . . . scaffold38804 WUBlastX LINE_RTE-X 11246 11467 40 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-X 486801 486977 67 - . . . . . -1 -1 -1 . . . scaffold67 WUBlastX LTR_Ngaro 231870 232025 29 + . . . . . -1 -1 -1 . . . scaffold829 WUBlastX LINE_L1 613625 613939 55 + . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Gypsy 218881 218904 21 - . . . . . -1 -1 -1 . . . C33126 WUBlastX DNA_TcMar-Tc1 5676 5828 50 - . . . . . -1 -1 -1 . . . scaffold980 WUBlastX LINE_L1-Tx1 281649 281840 48 + . . . . . -1 -1 -1 . . . scaffold38494 WUBlastX LINE_L2 54802 55128 61 + . . scaffold38494 GLEAN mRNA 8485 55173 0.992441 + . ID=CGI_10002806; scaffold77 WUBlastX LINE_CR1 732170 732298 75 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LINE_CR1 277131 277289 67 + . . . . . -1 -1 -1 . . . scaffold41684 WUBlastX LINE_L2 84066 84200 69 - . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_CR1 144024 144092 22 + . . . . . -1 -1 -1 . . . scaffold354 WUBlastX LINE_CR1 337873 338298 36 + . . . . . -1 -1 -1 . . . scaffold38458 WUBlastX LINE_CR1-L2 56006 56308 22 + . . scaffold38458 GLEAN mRNA 56051 56269 0.999372 + . ID=CGI_10002785; scaffold1436 WUBlastX LTR_Pao 51123 51422 68 + . . . . . -1 -1 -1 . . . scaffold37788 WUBlastX LTR_Pao 550 744 54 + . . . . . -1 -1 -1 . . . scaffold42760 WUBlastX DNA_Academ 171419 171502 24 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX DNA_hAT 886563 886658 24 + . . . . . -1 -1 -1 . . . scaffold419 WUBlastX DNA_hAT-Ac 507010 507489 35 + . . . . . -1 -1 -1 . . . scaffold1714 WUBlastX LTR_Copia 30540 30782 61 - . . . . . -1 -1 -1 . . . scaffold1865 WUBlastX LTR_Copia 81720 81962 63 + . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 859802 859894 51 - . . . . . -1 -1 -1 . . . scaffold1697 WUBlastX LTR_ERV1 12913 13116 53 + . . scaffold1697 GLEAN mRNA 140 13575 0.983491 + . ID=CGI_10007876; scaffold1480 WUBlastX LINE_Dong-R4 69104 69325 27 - . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LTR_DIRS 20661 20819 46 + . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX LTR_Ngaro 400252 400476 40 - . . . . . -1 -1 -1 . . . scaffold266 WUBlastX LINE_L2 181701 181850 34 - . . . . . -1 -1 -1 . . . scaffold1873 WUBlastX LINE_L2 54381 54941 26 - . . scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold681 WUBlastX LINE_L2 35261 35650 43 + . . scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold40366 WUBlastX LTR_Gypsy 51274 51414 58 + . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX DNA_hAT-Tip100 477557 477823 54 + . . . . . -1 -1 -1 . . . scaffold1888 WUBlastX DNA_hAT-hATw 147313 147651 27 + . . scaffold1888 GLEAN mRNA 114572 148611 0.858074 + . ID=CGI_10013297; scaffold33980 WUBlastX RC_Helitron 7101 7244 44 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold1440 WUBlastX RC_Helitron 134195 134497 42 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX DNA_IS4EU 115369 115515 61 - . . . . . -1 -1 -1 . . . scaffold525 WUBlastX DNA_IS4EU 60665 60862 34 - . . . . . -1 -1 -1 . . . C34402 WUBlastX LTR_Gypsy 17257 17403 20 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LTR_Gypsy 224316 224933 38 - . . scaffold591 GLEAN mRNA 224175 224468 0.561606 - . ID=CGI_10027559; scaffold204 WUBlastX LTR_Gypsy 865712 866008 42 - . . . . . -1 -1 -1 . . . scaffold11 WUBlastX DNA_Harbinger 57158 57430 62 - . . . . . -1 -1 -1 . . . scaffold425 WUBlastX LINE_L1 485695 485742 20 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_Jockey 675165 675260 26 + . . . . . -1 -1 -1 . . . scaffold483 WUBlastX DNA_TcMar-Marin 96016 96216 43 - . . . . . -1 -1 -1 . . . scaffold1014 WUBlastX DNA_TcMar-Fot1 595986 596465 47 + . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX DNA_TcMar-Tc1 234610 234933 72 + . . . . . -1 -1 -1 . . . scaffold115 WUBlastX DNA_TcMar-Marin 624640 624714 28 + . . scaffold115 GLEAN mRNA 617761 631483 0.999676 + . ID=CGI_10021409; scaffold925 WUBlastX DNA_TcMar-Marin 452139 452381 37 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX LINE_L2 91421 91987 27 + . . . . . -1 -1 -1 . . . C29576 WUBlastX LTR_Ngaro 1544 1753 43 - . . . . . -1 -1 -1 . . . scaffold1359 WUBlastX DNA_TcMar-Tc1 234502 234789 56 + . . . . . -1 -1 -1 . . . scaffold1673 WUBlastX LINE_Penelope 300228 300410 57 + . . . . . -1 -1 -1 . . . scaffold517 WUBlastX DNA_P 22985 23239 48 + . . . . . -1 -1 -1 . . . scaffold39274 WUBlastX LINE_Penelope 21053 21307 57 - . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Penelope 24681 24923 21 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_RTE-X 345401 345439 20 - . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_RTE-X 345505 345681 44 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX DNA_Maverick 251619 251876 40 + . . . . . -1 -1 -1 . . . scaffold917 WUBlastX LINE_RTE-X 175485 175619 34 - . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX LINE_RTE-X 175652 175738 50 - . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold358 WUBlastX LINE_RTE-X 144234 144278 21 + . . . . . -1 -1 -1 . . . scaffold866 WUBlastX DNA_TcMar-Tc2 47452 47958 54 + . . scaffold866 GLEAN mRNA 47434 48000 0.6496 + . ID=CGI_10004742; scaffold38596 WUBlastX DNA_TcMar-Marin 46696 46776 20 + . . . . . -1 -1 -1 . . . scaffold38596 WUBlastX DNA_TcMar-Marin 46865 47020 34 + . . . . . -1 -1 -1 . . . scaffold730 WUBlastX LINE_L1-Tx1 114456 114521 22 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_Pao 228972 229103 43 + . . . . . -1 -1 -1 . . . scaffold42596 WUBlastX LTR_Pao 30673 30840 46 + . . . . . -1 -1 -1 . . . scaffold39640 WUBlastX DNA_hAT-Tip100 64099 64302 63 + . . . . . -1 -1 -1 . . . scaffold43794 WUBlastX LINE_RTE-RTE 227388 227663 32 - . . . . . -1 -1 -1 . . . scaffold1436 WUBlastX LTR_Pao 129820 130137 60 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX LTR_Gypsy 62796 62882 21 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold107 WUBlastX LINE_L2 805283 805465 60 + . . . . . -1 -1 -1 . . . scaffold223 WUBlastX LINE_L2 146489 146698 36 - . . . . . -1 -1 -1 . . . scaffold1052 WUBlastX LINE_L2 79733 80077 61 - . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_L2 61102 61590 32 - . . . . . -1 -1 -1 . . . scaffold1061 WUBlastX LINE_CR1 379329 379451 21 + . . . . . -1 -1 -1 . . . scaffold39346 WUBlastX LTR_Gypsy 33531 33854 25 + . . . . . -1 -1 -1 . . . scaffold1832 WUBlastX DNA_En-Spm 198577 198837 53 - . . scaffold1832 GLEAN mRNA 198351 200947 0.999463 - . ID=CGI_10018468; scaffold509 WUBlastX LTR_Ngaro 93631 93744 44 + . . scaffold509 GLEAN mRNA 91758 98346 0.858612 - . ID=CGI_10018642; scaffold1097 WUBlastX LTR_Gypsy 481918 482328 56 - . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Gypsy 93974 94141 25 - . . . . . -1 -1 -1 . . . scaffold593 WUBlastX LTR_Gypsy 500294 500350 29 - . . . . . -1 -1 -1 . . . scaffold1131 WUBlastX DNA_Harbinger 122225 122362 46 - . . . . . -1 -1 -1 . . . C27890 WUBlastX LTR_Gypsy 3834 3926 58 - . . . . . -1 -1 -1 . . . scaffold1188 WUBlastX LTR_Gypsy 176592 177023 51 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1036 WUBlastX LTR_Gypsy 609353 609451 32 - . . . . . -1 -1 -1 . . . C29202 WUBlastX DNA_IS4EU 1148 1276 55 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX DNA_TcMar-Marin 43600 43782 54 + . . scaffold204 GLEAN mRNA 37773 52969 0.996606 - . ID=CGI_10026088; scaffold164 WUBlastX DNA_TcMar-Marin 715764 715889 21 - . . . . . -1 -1 -1 . . . scaffold1360 WUBlastX LINE_I 498304 498975 35 + . . . . . -1 -1 -1 . . . scaffold43818 WUBlastX DNA_TcMar-Marin 202157 202408 22 + . . scaffold43818 GLEAN mRNA 188862 206391 0.999997 + . ID=CGI_10012766; scaffold146 WUBlastX LINE_R2-Hero 563119 563505 57 + . . . . . -1 -1 -1 . . . scaffold577 WUBlastX DNA_hAT-Blackja 150467 150688 29 + . . scaffold577 GLEAN mRNA 118575 184181 0.72743 - . ID=CGI_10009918; scaffold406 WUBlastX DNA_hAT-Blackja 577524 577583 29 - . . scaffold406 GLEAN mRNA 577509 577850 0.55465 - . ID=CGI_10023859; scaffold716 WUBlastX DNA_Kolobok-IS4 63823 64248 56 - . . scaffold716 GLEAN mRNA 62841 64344 0.546164 - . ID=CGI_10014441; scaffold37668 WUBlastX LINE_Penelope 27746 28003 49 + . . . . . -1 -1 -1 . . . scaffold337 WUBlastX LINE_Penelope 996505 996672 52 - . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_Penelope 842437 842769 47 + . . scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold37944 WUBlastX DNA_MuDR 30779 30853 26 - . . . . . -1 -1 -1 . . . scaffold37944 WUBlastX DNA_MuDR 31022 31219 25 - . . . . . -1 -1 -1 . . . scaffold1174 WUBlastX DNA_MuDR 1071734 1072042 32 + . . . . . -1 -1 -1 . . . scaffold541 WUBlastX DNA_MuDR 456290 456544 57 - . . . . . -1 -1 -1 . . . scaffold591 WUBlastX DNA_MuDR 374845 375240 42 - . . scaffold591 GLEAN mRNA 374812 375012 0.988733 - . ID=CGI_10027565; scaffold735 WUBlastX DNA_MuDR 17514 17771 56 + . . . . . -1 -1 -1 . . . scaffold1812 WUBlastX LINE_L2 32068 32415 22 + . . scaffold1812 GLEAN mRNA 18505 39381 0.997673 - . ID=CGI_10004688; scaffold43182 WUBlastX LINE_L2 15904 16095 63 - . . . . . -1 -1 -1 . . . C32246 WUBlastX DNA_TcMar-ISRm1 9415 9612 39 - . . . . . -1 -1 -1 . . . scaffold695 WUBlastX DNA_TcMar-m44 366984 367328 44 + . . . . . -1 -1 -1 . . . scaffold1858 WUBlastX LINE_L1 113058 113264 53 + . . . . . -1 -1 -1 . . . scaffold1138 WUBlastX LINE_L1 308078 308206 46 - . . . . . -1 -1 -1 . . . scaffold1816 WUBlastX DNA_Kolobok-Hyd 266065 266166 25 + . . . . . -1 -1 -1 . . . scaffold41628 WUBlastX LINE_L1 98120 98305 23 + . . . . . -1 -1 -1 . . . scaffold591 WUBlastX LINE_RTE-X 1406702 1406845 32 + . . scaffold591 GLEAN mRNA 1401037 1412080 0.968913 + . ID=CGI_10027626; scaffold812 WUBlastX LINE_RTE-BovB 17222 17500 39 + . . . . . -1 -1 -1 . . . scaffold1362 WUBlastX LINE_RTE-X 565136 565240 25 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_Maverick 122518 122625 36 - . . . . . -1 -1 -1 . . . scaffold1583 WUBlastX LINE_Proto2 324408 324704 42 - . . scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold817 WUBlastX LTR_Gypsy 168136 168306 80 + . . . . . -1 -1 -1 . . . scaffold1042 WUBlastX LINE_RTE-BovB 5 247 64 - . . . . . -1 -1 -1 . . . scaffold42516 WUBlastX LINE_RTE-X 61649 61744 23 + . . . . . -1 -1 -1 . . . scaffold479 WUBlastX LINE_RTE-X 308595 308759 47 + . . scaffold479 GLEAN mRNA 298196 323122 0.478892 - . ID=CGI_10015700; scaffold338 WUBlastX LINE_RTE-X 226313 226465 56 - . . scaffold338 GLEAN mRNA 225763 251936 1 + . ID=CGI_10011188; scaffold20 WUBlastX LINE_RTE-X 457087 457251 64 + . . . . . -1 -1 -1 . . . scaffold41546 WUBlastX LINE_RTE-X 37004 37213 28 - . . . . . -1 -1 -1 . . . scaffold905 WUBlastX LINE_RTE-X 531 695 73 + . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_RTE-X 813701 813940 63 - . . . . . -1 -1 -1 . . . scaffold406 WUBlastX LINE_RTE-X 322467 322610 46 - . . . . . -1 -1 -1 . . . scaffold1219 WUBlastX LINE_RTE-X 449753 449890 45 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX LINE_RTE-X 380209 380379 61 + . . scaffold925 GLEAN mRNA 368361 388516 0.521242 + . ID=CGI_10017426; scaffold43552 WUBlastX LINE_RTE-X 179867 180121 57 - . . . . . -1 -1 -1 . . . scaffold1585 WUBlastX LINE_RTE-X 177787 177933 39 - . . . . . -1 -1 -1 . . . scaffold170 WUBlastX LINE_RTE-X 123259 123525 50 + . . . . . -1 -1 -1 . . . scaffold41732 WUBlastX LINE_RTE-X 107192 107386 20 + . . . . . -1 -1 -1 . . . scaffold34202 WUBlastX LINE_RTE-X 9785 9916 55 + . . scaffold34202 GLEAN mRNA 527 10844 1 - . ID=CGI_10001227; scaffold1764 WUBlastX LINE_RTE-X 19193 19369 54 + . . . . . -1 -1 -1 . . . scaffold393 WUBlastX LINE_RTE-X 93222 93398 54 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LINE_L1 335553 335912 31 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LINE_RTE-X 1075403 1075729 58 + . . . . . -1 -1 -1 . . . scaffold604 WUBlastX LINE_RTE-X 45198 45377 46 - . . scaffold604 GLEAN mRNA 42759 53290 0.454666 + . ID=CGI_10005591; scaffold663 WUBlastX LINE_RTE-X 119292 119465 34 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LINE_L1-Tx1 37395 37574 33 + . . scaffold964 GLEAN mRNA 34148 39936 0.41936 + . ID=CGI_10009727; C31574 WUBlastX LINE_L1-Tx1 3417 3719 51 - . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Gypsy-Cigr 274792 275169 53 + . . . . . -1 -1 -1 . . . scaffold102 WUBlastX LINE_CR1 192149 192220 29 - . . . . . -1 -1 -1 . . . scaffold568 WUBlastX LINE_CR1 295158 295250 21 + . . . . . -1 -1 -1 . . . scaffold41656 WUBlastX LINE_CR1-L2 67914 68006 59 - . . . . . -1 -1 -1 . . . scaffold41656 WUBlastX LINE_CR1-L2 67991 68119 21 - . . . . . -1 -1 -1 . . . scaffold663 WUBlastX LINE_CR1-L2 32763 32852 55 + . . . . . -1 -1 -1 . . . scaffold191 WUBlastX LINE_CR1 553026 553154 62 - . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold1315 WUBlastX LINE_CR1 511684 511812 62 - . . . . . -1 -1 -1 . . . scaffold1037 WUBlastX LINE_CR1 317569 317853 49 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LINE_CR1-L2 114813 115403 24 + . . scaffold1808 GLEAN mRNA 110431 132703 0.574175 + . ID=CGI_10008030; scaffold156 WUBlastX LINE_CR1 901733 902407 27 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX LINE_CR1 90590 91249 42 + . . scaffold983 GLEAN mRNA 90425 91342 0.906413 + . ID=CGI_10014027; scaffold1402 WUBlastX LINE_L2 479078 479575 26 + . . . . . -1 -1 -1 . . . scaffold451 WUBlastX LINE_L1 87681 87845 62 + . . scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold719 WUBlastX DNA_MuDR 349866 350117 68 - . . . . . -1 -1 -1 . . . scaffold42784 WUBlastX LTR_Pao 51553 51834 36 + . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LTR_Copia 101818 102066 44 + . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LTR_Gypsy-Cigr 23955 24503 47 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold177 WUBlastX LTR_Gypsy 219924 220067 32 + . . . . . -1 -1 -1 . . . scaffold1808 WUBlastX LTR_Gypsy 157449 158036 51 + . . . . . -1 -1 -1 . . . scaffold264 WUBlastX LTR_ERV1 63606 64226 74 + . . scaffold264 GLEAN mRNA 55806 65386 0.919425 + . ID=CGI_10003463; scaffold374 WUBlastX DNA_TcMar-Fot1 277430 277918 48 - . . . . . -1 -1 -1 . . . scaffold572 WUBlastX LTR_Gypsy 15519 16118 56 - . . scaffold572 GLEAN mRNA 5730 19170 0.671543 + . ID=CGI_10001775; scaffold885 WUBlastX LTR_DIRS 1018461 1018748 54 + . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold664 WUBlastX LTR_Ngaro 543413 543670 76 - . . scaffold664 GLEAN mRNA 543660 543839 0.999372 - . ID=CGI_10021455; scaffold42584 WUBlastX LINE_L2 100573 100803 65 + . . scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold1066 WUBlastX LTR_Ngaro 231189 231359 69 - . . . . . -1 -1 -1 . . . scaffold602 WUBlastX LTR_Ngaro 79511 79750 34 + . . . . . -1 -1 -1 . . . scaffold39384 WUBlastX LTR_Gypsy 44227 44409 83 - . . . . . -1 -1 -1 . . . scaffold139 WUBlastX LINE_L1-Tx1 13863 14111 24 + . . . . . -1 -1 -1 . . . scaffold43084 WUBlastX DNA_hAT-Tip100 142652 142945 61 + . . scaffold43084 GLEAN mRNA 127440 144570 0.298679 + . ID=CGI_10008568; scaffold1189 WUBlastX LINE_Jockey 234777 234995 27 + . . . . . -1 -1 -1 . . . scaffold101 WUBlastX DNA_hAT-Ac 37073 37216 62 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_R2-Hero 522216 522347 61 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX RC_Helitron 226429 226560 28 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1301 WUBlastX RC_Helitron 37428 37874 30 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_I 261533 261850 56 - . . scaffold347 GLEAN mRNA 231355 265361 0.350161 - . ID=CGI_10021787; scaffold591 WUBlastX DNA_hAT-Hobo 73925 74071 73 - . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LTR_ERV1 20470 20667 43 - . . scaffold43242 GLEAN mRNA 20616 21020 0.593326 - . ID=CGI_10009542; scaffold40638 WUBlastX LTR_ERVK 66215 66394 31 - . . scaffold40638 GLEAN mRNA 61308 67362 0.755375 - . ID=CGI_10004287; scaffold1532 WUBlastX DNA_IS4EU 1121629 1122069 49 + . . . . . -1 -1 -1 . . . scaffold38130 WUBlastX LTR_Gypsy 32307 32507 26 - . . scaffold38130 GLEAN mRNA 32205 35051 0.988307 - . ID=CGI_10002637; scaffold20 WUBlastX LTR_Gypsy 38216 38761 51 + . . . . . -1 -1 -1 . . . scaffold39202 WUBlastX LTR_Gypsy 47129 47410 42 + . . . . . -1 -1 -1 . . . scaffold1726 WUBlastX LTR_Gypsy 292452 292994 52 - . . scaffold1726 GLEAN mRNA 280850 293294 0.426779 - . ID=CGI_10015637; scaffold626 WUBlastX DNA_Harbinger 588237 588497 46 - . . . . . -1 -1 -1 . . . C15908 WUBlastX LINE_L1 6 329 64 - . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 738412 738615 31 + . . scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold42930 WUBlastX LINE_L1 139193 139330 21 - . . . . . -1 -1 -1 . . . scaffold149 WUBlastX LINE_L1 394905 394970 34 - . . . . . -1 -1 -1 . . . scaffold1518 WUBlastX LINE_L1 422444 422941 53 - . . scaffold1518 GLEAN mRNA 421619 427340 0.991637 - . ID=CGI_10017813; scaffold1745 WUBlastX LINE_L1 8502 8861 43 + . . scaffold1745 GLEAN mRNA 8109 9842 0.777131 + . ID=CGI_10005402; scaffold1016 WUBlastX LINE_L1 135110 135364 31 + . . . . . -1 -1 -1 . . . scaffold40164 WUBlastX LINE_L1-Tx1 7760 8008 59 + . . scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold426 WUBlastX LINE_L1-Tx1 95043 95153 21 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LINE_L1 50363 50572 39 + . . . . . -1 -1 -1 . . . scaffold43764 WUBlastX DNA_TcMar-Tc1 111868 112065 40 + . . . . . -1 -1 -1 . . . scaffold563 WUBlastX DNA_TcMar-Marin 7082 7456 22 + . . . . . -1 -1 -1 . . . scaffold208 WUBlastX DNA_TcMar-Marin 116088 116267 28 + . . scaffold208 GLEAN mRNA 115161 117315 1 - . ID=CGI_10010026; scaffold1104 WUBlastX DNA_TcMar-Marin 566528 566593 31 + . . . . . -1 -1 -1 . . . scaffold133 WUBlastX LINE_L1 45854 46111 56 - . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LINE_CR1 247105 247500 60 - . . scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold363 WUBlastX LTR_Ngaro 365041 365214 68 - . . . . . -1 -1 -1 . . . scaffold705 WUBlastX LINE_Penelope 344892 344984 27 - . . scaffold705 GLEAN mRNA 340127 351838 0.495675 + . ID=CGI_10015517; scaffold976 WUBlastX LINE_Penelope 327879 327980 32 + . . scaffold976 GLEAN mRNA 303574 336885 0.551212 + . ID=CGI_10014017; scaffold976 WUBlastX LINE_Penelope 328018 328239 46 + . . scaffold976 GLEAN mRNA 303574 336885 0.551212 + . ID=CGI_10014017; scaffold36118 WUBlastX DNA_MuDR 30748 31056 42 + . . . . . -1 -1 -1 . . . scaffold43552 WUBlastX LINE_Penelope 253435 253581 52 - . . . . . -1 -1 -1 . . . scaffold1095 WUBlastX LINE_Penelope 5762 5998 43 - . . . . . -1 -1 -1 . . . scaffold43894 WUBlastX LINE_RTE-BovB 121568 121795 40 - . . . . . -1 -1 -1 . . . scaffold1382 WUBlastX LINE_Penelope 279963 280121 66 - . . . . . -1 -1 -1 . . . scaffold1731 WUBlastX LINE_RTE-BovB 23003 23110 61 + . . scaffold1731 GLEAN mRNA 22393 24983 1 - . ID=CGI_10001591; scaffold393 WUBlastX LINE_RTE-X 721753 722076 27 - . . scaffold393 GLEAN mRNA 700989 727086 0.68143 + . ID=CGI_10026911; scaffold544 WUBlastX LINE_RTE-X 224503 224751 67 + . . . . . -1 -1 -1 . . . scaffold388 WUBlastX LINE_RTE-X 220619 220732 55 - . . scaffold388 GLEAN mRNA 216874 221663 0.662264 - . ID=CGI_10020466; scaffold388 WUBlastX LINE_RTE-X 220619 220732 55 - . . scaffold388 GLEAN mRNA 211826 226750 0.996237 + . ID=CGI_10020465; scaffold37740 WUBlastX LINE_RTE-X 27089 27376 36 + . . scaffold37740 GLEAN mRNA 12349 40683 0.409241 - . ID=CGI_10002469; scaffold41806 WUBlastX LINE_RTE-X 65353 65634 33 + . . . . . -1 -1 -1 . . . C26624 WUBlastX LINE_RTE-BovB 2054 2287 70 - . . . . . -1 -1 -1 . . . scaffold1454 WUBlastX LTR_ERV1 66278 66556 23 - . . scaffold1454 GLEAN mRNA 63589 73088 0.838276 - . ID=CGI_10004314; scaffold257 WUBlastX DNA_En-Spm 1277381 1277533 28 - . . . . . -1 -1 -1 . . . scaffold33412 WUBlastX LINE_Proto2 6090 6182 28 + . . . . . -1 -1 -1 . . . scaffold1132 WUBlastX LINE_R2 105785 106069 30 - . . scaffold1132 GLEAN mRNA 105539 106657 0.995556 - . ID=CGI_10023312; scaffold43182 WUBlastX LTR_Gypsy 129381 129950 36 + . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_ERV1 69145 69369 40 - . . . . . -1 -1 -1 . . . scaffold38650 WUBlastX DNA_Maverick 47941 48138 59 - . . . . . -1 -1 -1 . . . scaffold43028 WUBlastX LINE_RTE-BovB 17106 17261 37 - . . scaffold43028 GLEAN mRNA 13952 19166 0.998274 + . ID=CGI_10008502; scaffold210 WUBlastX LINE_RTE-BovB 421790 421918 56 + . . scaffold210 GLEAN mRNA 410849 421921 0.526266 + . ID=CGI_10015905; scaffold955 WUBlastX LINE_RTE-BovB 119975 120220 30 - . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold433 WUBlastX LINE_RTE-X 1240699 1240782 39 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Sola 800051 800221 46 + . . . . . -1 -1 -1 . . . scaffold1143 WUBlastX LTR_Gypsy 150076 150438 25 + . . . . . -1 -1 -1 . . . scaffold59 WUBlastX LTR_Gypsy 226926 227204 42 - . . scaffold59 GLEAN mRNA 214884 227564 0.932002 - . ID=CGI_10011277; scaffold1436 WUBlastX LINE_L1-Tx1 12498 12746 63 + . . . . . -1 -1 -1 . . . scaffold36158 WUBlastX LINE_L1-Tx1 18489 18677 41 - . . scaffold36158 GLEAN mRNA 15216 24760 0.784797 + . ID=CGI_10001808; scaffold560 WUBlastX LINE_L1-Tx1 30343 30471 45 - . . . . . -1 -1 -1 . . . scaffold513 WUBlastX LINE_Jockey 594215 594286 53 + . . . . . -1 -1 -1 . . . scaffold767 WUBlastX LINE_L1-Tx1 280245 280430 52 + . . scaffold767 GLEAN mRNA 267592 288448 0.433091 + . ID=CGI_10014846; scaffold784 WUBlastX LINE_L1-Tx1 433304 433588 34 + . . . . . -1 -1 -1 . . . C29736 WUBlastX LINE_L1-Tx1 3177 3368 48 + . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LINE_L1-Tx1 366853 367014 39 - . . . . . -1 -1 -1 . . . scaffold1778 WUBlastX LTR_Copia 44180 44314 29 + . . . . . -1 -1 -1 . . . scaffold733 WUBlastX LTR_Copia 1021470 1021565 22 + . . . . . -1 -1 -1 . . . scaffold121 WUBlastX LINE_L2 456052 456171 20 - . . . . . -1 -1 -1 . . . scaffold41972 WUBlastX LINE_L1 97737 97892 56 - . . scaffold41972 GLEAN mRNA 94621 99839 0.620107 - . ID=CGI_10005861; scaffold41972 WUBlastX LINE_L1 97737 97892 56 - . . scaffold41972 GLEAN mRNA 95224 139840 0.240877 + . ID=CGI_10005862; scaffold1714 WUBlastX LTR_Pao 26621 26797 53 - . . . . . -1 -1 -1 . . . C2553 WUBlastX LTR_Pao 5 106 65 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Pao 505057 505371 45 - . . . . . -1 -1 -1 . . . scaffold1209 WUBlastX LTR_Pao 101578 101712 20 - . . scaffold1209 GLEAN mRNA 101278 101793 0.999661 - . ID=CGI_10007965; scaffold226 WUBlastX LTR_Gypsy 468313 468357 25 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold43526 WUBlastX LTR_Pao 169717 169845 20 + . . scaffold43526 GLEAN mRNA 169594 169887 0.999991 + . ID=CGI_10010788; scaffold660 WUBlastX DNA_hAT-Tip100 201325 201957 27 + . . scaffold660 GLEAN mRNA 201436 201984 0.999661 + . ID=CGI_10013753; scaffold789 WUBlastX LINE_Rex-Babar 366862 367338 52 + . . . . . -1 -1 -1 . . . scaffold1884 WUBlastX LINE_CR1-L2 280835 281089 26 - . . . . . -1 -1 -1 . . . scaffold1789 WUBlastX LINE_L2 63087 63455 27 - . . . . . -1 -1 -1 . . . scaffold1101 WUBlastX LINE_CR1-L2 370895 371110 42 + . . scaffold1101 GLEAN mRNA 366979 390760 0.569292 + . ID=CGI_10023023; scaffold1651 WUBlastX LINE_CR1-L2 46751 46915 61 - . . . . . -1 -1 -1 . . . scaffold728 WUBlastX LINE_L2 209196 209381 44 - . . . . . -1 -1 -1 . . . scaffold619 WUBlastX LINE_L2 167453 167578 58 + . . . . . -1 -1 -1 . . . scaffold260 WUBlastX LINE_L2 62597 62866 24 + . . scaffold260 GLEAN mRNA 48314 65715 0.848653 - . ID=CGI_10003729; scaffold247 WUBlastX LINE_CR1 358807 359061 28 - . . . . . -1 -1 -1 . . . scaffold43742 WUBlastX LINE_CR1 58046 58285 20 - . . . . . -1 -1 -1 . . . scaffold39804 WUBlastX LINE_L2 53766 53882 20 - . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold1872 WUBlastX LTR_Gypsy 64951 65154 21 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_DIRS 69283 69327 24 - . . . . . -1 -1 -1 . . . scaffold209 WUBlastX LTR_DIRS 205579 205782 52 - . . . . . -1 -1 -1 . . . scaffold681 WUBlastX LTR_Gypsy 269165 269953 40 + . . . . . -1 -1 -1 . . . scaffold117 WUBlastX LTR_Gypsy 382840 383316 55 + . . scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold1845 WUBlastX LTR_ERV1 130017 130415 45 - . . scaffold1845 GLEAN mRNA 129180 130913 0.999965 - . ID=CGI_10011993; scaffold79 WUBlastX LINE_RTE-BovB 501588 501665 23 + . . . . . -1 -1 -1 . . . C133 WUBlastX LTR_Gypsy-Cigr 3 95 40 - . . . . . -1 -1 -1 . . . scaffold62 WUBlastX LTR_Gypsy 365990 366190 56 + . . . . . -1 -1 -1 . . . scaffold149 WUBlastX DNA_Harbinger 633718 633897 47 + . . scaffold149 GLEAN mRNA 633695 633907 0.618058 + . ID=CGI_10025313; scaffold343 WUBlastX LTR_Gypsy 378568 378702 65 + . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LTR_Gypsy 378719 378769 30 + . . . . . -1 -1 -1 . . . scaffold40828 WUBlastX LTR_Gypsy 57788 57934 20 - . . scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold222 WUBlastX DNA_Harbinger 154505 154600 32 - . . . . . -1 -1 -1 . . . scaffold40088 WUBlastX DNA_Harbinger 10710 10901 61 + . . . . . -1 -1 -1 . . . scaffold1214 WUBlastX LTR_Gypsy 255369 255554 42 + . . . . . -1 -1 -1 . . . scaffold760 WUBlastX LTR_Gypsy 33289 33372 37 + . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 132737 132847 71 - . . . . . -1 -1 -1 . . . scaffold39476 WUBlastX LTR_Gypsy 49890 50210 67 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold973 WUBlastX DNA_IS4EU 691400 691552 47 + . . . . . -1 -1 -1 . . . scaffold38864 WUBlastX DNA_TcMar-Marin 53669 53863 39 + . . . . . -1 -1 -1 . . . scaffold1020 WUBlastX DNA_IS4EU 18272 18499 55 + . . . . . -1 -1 -1 . . . scaffold1024 WUBlastX DNA_Kolobok-IS4 1757044 1757136 32 + . . scaffold1024 GLEAN mRNA 1751618 1765575 0.556405 - . ID=CGI_10028585; scaffold1024 WUBlastX DNA_Kolobok-IS4 1757149 1757313 22 + . . scaffold1024 GLEAN mRNA 1751618 1765575 0.556405 - . ID=CGI_10028585; scaffold42448 WUBlastX RC_Helitron 30017 30250 51 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX RC_Helitron 45572 45745 50 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold39212 WUBlastX DNA_hAT-Tip100 53094 53351 52 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold34192 WUBlastX DNA_Kolobok 4972 5142 37 + . . . . . -1 -1 -1 . . . scaffold422 WUBlastX LINE_Penelope 284899 285276 20 - . . scaffold422 GLEAN mRNA 284593 286595 1 - . ID=CGI_10018805; scaffold469 WUBlastX DNA_P 602085 602297 28 + . . scaffold469 GLEAN mRNA 597386 616988 1 + . ID=CGI_10024688; scaffold469 WUBlastX DNA_P 602085 602297 28 + . . scaffold469 GLEAN mRNA 602076 609647 0.999676 - . ID=CGI_10024689; scaffold1101 WUBlastX LINE_Penelope 696091 696330 40 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LINE_Penelope 88908 89330 23 - . . . . . -1 -1 -1 . . . scaffold458 WUBlastX LINE_Penelope 21918 22208 36 + . . . . . -1 -1 -1 . . . scaffold1000 WUBlastX LTR_ERV1 273528 273740 44 - . . scaffold1000 GLEAN mRNA 270040 273707 0.558382 - . ID=CGI_10013085; scaffold302 WUBlastX LTR_ERV1 10935 11309 28 - . . . . . -1 -1 -1 . . . scaffold304 WUBlastX LTR_ERV1 153343 153627 39 - . . scaffold304 GLEAN mRNA 147715 155032 0.999344 - . ID=CGI_10016552; scaffold115 WUBlastX DNA_NOF 142697 142975 34 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_Penelope 110270 110470 63 + . . . . . -1 -1 -1 . . . scaffold504 WUBlastX LINE_L1 212731 213033 37 + . . scaffold504 GLEAN mRNA 209248 225927 0.98336 + . ID=CGI_10016026; scaffold401 WUBlastX DNA_TcMar-Tc1 10503 10676 60 + . . scaffold401 GLEAN mRNA 8376 27637 0.998672 + . ID=CGI_10006983; scaffold100 WUBlastX DNA_TcMar-Tc1 440748 440978 58 - . . scaffold100 GLEAN mRNA 434385 451106 0.72825 - . ID=CGI_10026438; scaffold150 WUBlastX LINE_L1 540585 540707 58 - . . . . . -1 -1 -1 . . . scaffold1307 WUBlastX LINE_L1 788406 788597 58 - . . . . . -1 -1 -1 . . . scaffold192 WUBlastX LINE_L1 44543 44695 23 - . . . . . -1 -1 -1 . . . scaffold1802 WUBlastX LINE_L1-Tx1 80609 80707 24 + . . scaffold1802 GLEAN mRNA 71908 80776 0.999761 + . ID=CGI_10007150; scaffold43008 WUBlastX DNA_Kolobok 144447 144635 24 + . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA_Kolobok 96285 96380 26 + . . . . . -1 -1 -1 . . . scaffold1035 WUBlastX DNA_Kolobok 161685 161924 27 - . . scaffold1035 GLEAN mRNA 157961 163458 0.999666 + . ID=CGI_10009365; scaffold1154 WUBlastX DNA_Kolobok 489686 489925 36 - . . . . . -1 -1 -1 . . . scaffold347 WUBlastX LINE_L1-Tx1 678596 679000 51 + . . . . . -1 -1 -1 . . . scaffold1187 WUBlastX LINE_L1-Tx1 71558 71761 37 + . . . . . -1 -1 -1 . . . scaffold556 WUBlastX LINE_RTE-BovB 111744 111845 24 - . . . . . -1 -1 -1 . . . scaffold689 WUBlastX LINE_RTE-BovB 82214 82441 41 + . . . . . -1 -1 -1 . . . scaffold203 WUBlastX DNA_Maverick 279413 279610 58 - . . . . . -1 -1 -1 . . . scaffold635 WUBlastX LINE_RTE-X 64526 64618 25 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_RTE-X 355565 355837 47 - . . . . . -1 -1 -1 . . . scaffold66 WUBlastX LINE_RTE-BovB 83585 83809 55 + . . . . . -1 -1 -1 . . . scaffold313 WUBlastX LINE_RTE-X 1190177 1190278 42 - . . scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold831 WUBlastX LINE_RTE-X 131446 131772 29 + . . . . . -1 -1 -1 . . . scaffold41636 WUBlastX LINE_RTE-X 95589 95828 52 + . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LINE_RTE-X 1048969 1049109 72 - . . . . . -1 -1 -1 . . . scaffold1889 WUBlastX LINE_RTE-X 197433 197633 35 - . . . . . -1 -1 -1 . . . scaffold34832 WUBlastX LINE_RTE-X 5005 5217 42 + . . . . . -1 -1 -1 . . . scaffold43242 WUBlastX LINE_RTE-X 174300 174371 33 - . . . . . -1 -1 -1 . . . scaffold39320 WUBlastX LINE_RTE-X 13581 13739 66 + . . . . . -1 -1 -1 . . . scaffold61 WUBlastX LINE_RTE-X 41748 41906 53 + . . scaffold61 GLEAN mRNA 36076 46070 0.936561 + . ID=CGI_10016337; scaffold479 WUBlastX LINE_RTE-X 308230 308451 23 + . . scaffold479 GLEAN mRNA 298196 323122 0.478892 - . ID=CGI_10015700; C16106 WUBlastX LINE_RTE-X 9 350 58 + . . . . . -1 -1 -1 . . . scaffold38058 WUBlastX LINE_RTE-X 9303 9614 28 + . . . . . -1 -1 -1 . . . scaffold42 WUBlastX LTR_Ngaro 78946 79053 59 - . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold204 WUBlastX DNA_TcMar-Marin 419488 419616 47 + . . . . . -1 -1 -1 . . . scaffold43772 WUBlastX LINE_RTE-X 230431 230517 49 + . . . . . -1 -1 -1 . . . scaffold34968 WUBlastX LINE_Penelope 19929 20105 45 - . . . . . -1 -1 -1 . . . scaffold38438 WUBlastX DNA_TcMar-Marin 54107 54250 70 - . . scaffold38438 GLEAN mRNA 54044 54235 0.618241 - . ID=CGI_10002770; scaffold286 WUBlastX LINE_L1-Tx1 16602 16874 37 + . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LINE_L1-Tx1 220944 221450 29 - . . scaffold664 GLEAN mRNA 213415 231457 0.897817 + . ID=CGI_10021440; scaffold1431 WUBlastX LINE_L1-Tx1 45303 45416 23 + . . . . . -1 -1 -1 . . . C25828 WUBlastX DNA_Zator 2264 2365 21 - . . . . . -1 -1 -1 . . . C25828 WUBlastX DNA_Zator 2404 2520 29 - . . . . . -1 -1 -1 . . . scaffold1883 WUBlastX LINE_L1-Tx1 108423 108671 45 - . . . . . -1 -1 -1 . . . scaffold447 WUBlastX LINE_L1-Tx1 29362 29811 27 + . . scaffold447 GLEAN mRNA 1608 38607 0.995957 + . ID=CGI_10014216; scaffold1814 WUBlastX LINE_L1-Tx1 22789 23055 45 - . . . . . -1 -1 -1 . . . scaffold365 WUBlastX LINE_L1-Tx1 414254 414397 60 - . . . . . -1 -1 -1 . . . scaffold43574 WUBlastX LINE_L1-Tx1 276027 276176 68 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX DNA_TcMar-Tc1 189919 190194 48 + . . . . . -1 -1 -1 . . . scaffold11 WUBlastX LTR_Gypsy 61407 61811 78 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; C28456 WUBlastX DNA_TcMar-Tc1 2164 2364 52 - . . . . . -1 -1 -1 . . . scaffold1376 WUBlastX DNA_TcMar-Tc1 20045 20251 20 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX DNA_TcMar-Tc1 434260 434469 50 + . . . . . -1 -1 -1 . . . scaffold993 WUBlastX LINE_L2 137619 137753 30 - . . . . . -1 -1 -1 . . . scaffold457 WUBlastX LINE_CR1 155754 155915 50 - . . . . . -1 -1 -1 . . . scaffold1157 WUBlastX LINE_L2 228919 229182 34 - . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold204 WUBlastX LINE_CR1 808336 808491 55 - . . . . . -1 -1 -1 . . . scaffold672 WUBlastX LINE_L2 258756 258998 28 + . . . . . -1 -1 -1 . . . scaffold1546 WUBlastX LINE_L2 14465 14662 40 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LINE_L2 483945 484214 64 - . . . . . -1 -1 -1 . . . scaffold42990 WUBlastX LINE_L2 94961 95095 30 + . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_L2 585469 585597 44 + . . . . . -1 -1 -1 . . . C24148 WUBlastX LINE_CR1-L2 728 766 27 + . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LINE_CR1-L2 1171222 1171335 66 - . . scaffold198 GLEAN mRNA 1155548 1172013 0.535042 + . ID=CGI_10027850; scaffold198 WUBlastX LINE_CR1-L2 1171222 1171335 66 - . . scaffold198 GLEAN mRNA 1169314 1180690 0.99935 - . ID=CGI_10027851; scaffold1741 WUBlastX LINE_CR1-L2 350236 350385 36 - . . . . . -1 -1 -1 . . . scaffold1528 WUBlastX LINE_CR1-L2 26754 26933 60 - . . . . . -1 -1 -1 . . . scaffold160 WUBlastX LINE_CR1-L2 163178 163369 72 + . . . . . -1 -1 -1 . . . scaffold142 WUBlastX LINE_CR1-L2 746806 746973 39 + . . scaffold142 GLEAN mRNA 742581 749967 0.999676 + . ID=CGI_10026769; scaffold1737 WUBlastX LTR_Copia 387186 387293 31 + . . . . . -1 -1 -1 . . . scaffold222 WUBlastX DNA_TcMar-Tc1 22062 22301 68 + . . . . . -1 -1 -1 . . . scaffold38122 WUBlastX LTR_Gypsy 38177 38233 20 - . . . . . -1 -1 -1 . . . scaffold40182 WUBlastX LINE_CR1 19715 20029 38 + . . scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold67 WUBlastX DNA_hAT-Tip100 28442 28747 39 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold42592 WUBlastX DNA_hAT-Tip100 147066 147308 49 - . . . . . -1 -1 -1 . . . scaffold39074 WUBlastX DNA_TcMar-Marin 12620 12811 41 - . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_Pao 34625 34780 49 + . . . . . -1 -1 -1 . . . scaffold801 WUBlastX DNA_TcMar-Marin 633027 633287 31 + . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; scaffold43314 WUBlastX LINE_CR1 81949 82131 29 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LTR_Pao 350341 350520 31 - . . scaffold962 GLEAN mRNA 349660 355150 0.909734 - . ID=CGI_10027643; scaffold962 WUBlastX LTR_Pao 350641 350871 37 - . . scaffold962 GLEAN mRNA 349660 355150 0.909734 - . ID=CGI_10027643; scaffold1682 WUBlastX LTR_Gypsy-Cigr 431374 431913 29 + . . . . . -1 -1 -1 . . . scaffold1316 WUBlastX LTR_Copia 260830 261228 31 + . . scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold36202 WUBlastX LTR_Gypsy-Cigr 28207 28401 60 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LTR_Gypsy 1158311 1158424 76 - . . . . . -1 -1 -1 . . . scaffold1347 WUBlastX LTR_Gypsy 21903 22289 70 + . . scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold626 WUBlastX LTR_Gypsy 574228 574392 69 + . . . . . -1 -1 -1 . . . scaffold169 WUBlastX LTR_Gypsy 500899 501063 69 + . . . . . -1 -1 -1 . . . scaffold40156 WUBlastX LTR_Gypsy-Cigr 79876 80082 60 + . . . . . -1 -1 -1 . . . scaffold1882 WUBlastX LTR_Gypsy 111232 111612 45 - . . scaffold1882 GLEAN mRNA 110254 111651 0.593389 - . ID=CGI_10010501; scaffold593 WUBlastX LTR_Gypsy 500427 500690 41 - . . . . . -1 -1 -1 . . . scaffold1512 WUBlastX LTR_ERV1 77535 78335 43 + . . . . . -1 -1 -1 . . . C31398 WUBlastX LTR_Gypsy 6868 7224 76 + . . . . . -1 -1 -1 . . . scaffold41882 WUBlastX LTR_Gypsy 132536 132862 63 - . . . . . -1 -1 -1 . . . scaffold1759 WUBlastX LTR_Gypsy 96653 96700 20 + . . scaffold1759 GLEAN mRNA 83905 106418 0.889634 + . ID=CGI_10010906; scaffold41766 WUBlastX LTR_Gypsy 32362 32613 56 - . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold40438 WUBlastX LINE_L2 9326 9700 41 - . . scaffold40438 GLEAN mRNA 8874 9350 0.617633 - . ID=CGI_10004080; scaffold1352 WUBlastX LINE_L2 68566 68619 24 + . . . . . -1 -1 -1 . . . scaffold1773 WUBlastX LINE_L2 54743 54910 41 - . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX DNA_TcMar-Marin 65756 65812 37 - . . . . . -1 -1 -1 . . . scaffold43358 WUBlastX LTR_Ngaro 33769 33963 53 - . . . . . -1 -1 -1 . . . scaffold1678 WUBlastX LTR_Ngaro 95201 95395 41 + . . . . . -1 -1 -1 . . . scaffold42172 WUBlastX LTR_Ngaro 38565 38774 56 - . . . . . -1 -1 -1 . . . scaffold1686 WUBlastX LINE_Jockey 10846 10983 31 + . . scaffold1686 GLEAN mRNA 3495 11949 0.992485 - . ID=CGI_10005072; scaffold1096 WUBlastX LTR_Gypsy 30220 30555 35 + . . . . . -1 -1 -1 . . . scaffold123 WUBlastX LTR_Gypsy 12349 12684 49 + . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LTR_Gypsy 402068 402169 26 - . . . . . -1 -1 -1 . . . scaffold1897 WUBlastX LTR_Gypsy 402724 402957 54 - . . . . . -1 -1 -1 . . . scaffold257 WUBlastX LINE_L1 27981 28097 30 - . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX DNA_TcMar-Tc2 126422 126640 68 - . . . . . -1 -1 -1 . . . scaffold43008 WUBlastX LINE_Jockey 20891 21109 52 - . . scaffold43008 GLEAN mRNA 18841 33811 0.999674 - . ID=CGI_10008458; scaffold763 WUBlastX DNA_hAT-Tip100 3 80 29 - . . . . . -1 -1 -1 . . . scaffold763 WUBlastX DNA_hAT-Tip100 85 147 32 - . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_hAT-Tip100 80099 80356 37 + . . . . . -1 -1 -1 . . . scaffold42326 WUBlastX LINE_Jockey 36476 37141 37 + . . . . . -1 -1 -1 . . . scaffold934 WUBlastX DNA_Harbinger 261865 262089 54 - . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX RC_Helitron 140507 140620 37 + . . scaffold43844 GLEAN mRNA 140609 151100 0.911331 + . ID=CGI_10013147; scaffold43844 WUBlastX RC_Helitron 141075 141296 31 + . . scaffold43844 GLEAN mRNA 140609 151100 0.911331 + . ID=CGI_10013147; scaffold1314 WUBlastX RC_Helitron 84758 85342 75 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX DNA_IS4EU 1222683 1222805 49 + . . scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; C31070 WUBlastX DNA_IS4EU 4265 4654 69 - . . C31070 GLEAN mRNA 4205 5578 0.992577 - . ID=CGI_10000699; scaffold1603 WUBlastX DNA_IS4EU 3127 3759 37 - . . . . . -1 -1 -1 . . . scaffold1097 WUBlastX DNA_IS4EU 607190 607909 21 - . . . . . -1 -1 -1 . . . scaffold97 WUBlastX DNA_IS4EU 90361 90459 35 - . . scaffold97 GLEAN mRNA 72894 92330 0.60683 - . ID=CGI_10005686; scaffold1822 WUBlastX LTR_Gypsy 25575 25703 42 + . . . . . -1 -1 -1 . . . scaffold1327 WUBlastX LTR_Gypsy 217048 217128 26 - . . . . . -1 -1 -1 . . . C18324 WUBlastX LTR_Gypsy 323 559 73 + . . . . . -1 -1 -1 . . . scaffold38364 WUBlastX LTR_Gypsy 13434 13979 43 + . . scaffold38364 GLEAN mRNA 13434 14450 0.986568 + . ID=CGI_10002730; C30140 WUBlastX LTR_Gypsy 1842 2024 40 + . . C30140 GLEAN mRNA 1968 2204 0.618186 + . ID=CGI_10000597; scaffold1345 WUBlastX LTR_Gypsy 285736 285852 21 + . . . . . -1 -1 -1 . . . scaffold1419 WUBlastX LTR_Gypsy 12287 12424 67 + . . . . . -1 -1 -1 . . . scaffold40216 WUBlastX LTR_Gypsy 20873 21187 32 - . . scaffold40216 GLEAN mRNA 20957 23593 0.998157 - . ID=CGI_10003965; scaffold1149 WUBlastX LTR_Gypsy 457562 457828 48 - . . . . . -1 -1 -1 . . . scaffold35994 WUBlastX LTR_Gypsy 25936 26127 20 + . . . . . -1 -1 -1 . . . scaffold546 WUBlastX LINE_L1 647635 648216 25 + . . scaffold546 GLEAN mRNA 645146 650884 1 + . ID=CGI_10021019; scaffold1369 WUBlastX LTR_Gypsy 14014 14136 57 - . . . . . -1 -1 -1 . . . scaffold113 WUBlastX DNA_Harbinger 570909 570950 26 - . . . . . -1 -1 -1 . . . scaffold382 WUBlastX DNA_Harbinger 81167 81277 68 + . . . . . -1 -1 -1 . . . scaffold721 WUBlastX DNA_Harbinger 37183 37278 25 - . . . . . -1 -1 -1 . . . scaffold40952 WUBlastX DNA_Kolobok-Hyd 56541 56747 26 + . . scaffold40952 GLEAN mRNA 55267 57538 0.797605 + . ID=CGI_10004594; scaffold332 WUBlastX LINE_L1 542684 542905 26 + . . . . . -1 -1 -1 . . . scaffold784 WUBlastX LINE_L1 64701 65123 22 + . . . . . -1 -1 -1 . . . scaffold1848 WUBlastX LINE_L1-Tx1 117809 117955 48 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_L1 590196 590813 51 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; C24396 WUBlastX LINE_L1 1655 2029 25 - . . . . . -1 -1 -1 . . . C33510 WUBlastX LINE_L1 5568 5642 23 + . . . . . -1 -1 -1 . . . scaffold962 WUBlastX LINE_L1 901323 901409 40 - . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold1836 WUBlastX LINE_L1 1134925 1135656 31 + . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_L1 590115 590663 59 - . . scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold564 WUBlastX DNA_TcMar-Marin 373456 373560 24 + . . . . . -1 -1 -1 . . . scaffold98 WUBlastX DNA_TcMar-Marin 230937 231158 23 - . . . . . -1 -1 -1 . . . scaffold601 WUBlastX DNA_TcMar-Fot1 695828 695905 20 - . . . . . -1 -1 -1 . . . scaffold101 WUBlastX LINE_LOA 632909 632995 20 - . . . . . -1 -1 -1 . . . scaffold43520 WUBlastX LINE_Penelope 188920 189144 59 + . . scaffold43520 GLEAN mRNA 184106 230161 0.796254 - . ID=CGI_10010721; scaffold43708 WUBlastX LTR_ERV1 60713 60832 51 - . . . . . -1 -1 -1 . . . scaffold1154 WUBlastX LINE_Penelope 1115898 1116158 43 + . . scaffold1154 GLEAN mRNA 1080378 1140871 0.124336 - . ID=CGI_10026207; C34458 WUBlastX LTR_Gypsy 12317 12538 34 - . . . . . -1 -1 -1 . . . scaffold670 WUBlastX DNA 50740 51012 30 - . . . . . -1 -1 -1 . . . scaffold1036 WUBlastX DNA_MuDR 479312 479560 51 - . . scaffold1036 GLEAN mRNA 472347 489883 1 - . ID=CGI_10019970; scaffold621 WUBlastX LINE_Penelope 350352 350645 39 - . . . . . -1 -1 -1 . . . scaffold1293 WUBlastX LINE_Penelope 150763 150840 43 - . . . . . -1 -1 -1 . . . scaffold33832 WUBlastX DNA_P 918 1376 23 - . . . . . -1 -1 -1 . . . scaffold599 WUBlastX DNA_P 340699 341022 42 - . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; C26566 WUBlastX DNA_P 3044 3367 42 + . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LINE_Penelope 577930 578325 35 + . . . . . -1 -1 -1 . . . scaffold565 WUBlastX LINE_RTE-X 52651 52737 38 + . . . . . -1 -1 -1 . . . scaffold565 WUBlastX LINE_RTE-X 52733 52837 34 + . . . . . -1 -1 -1 . . . scaffold598 WUBlastX LINE_RTE-X 4298 4753 64 + . . scaffold598 GLEAN mRNA 1303 4771 0.992797 + . ID=CGI_10001778; scaffold394 WUBlastX LINE_RTE-X 150999 151295 32 + . . . . . -1 -1 -1 . . . scaffold41776 WUBlastX LINE_RTE-X 14851 14952 34 + . . . . . -1 -1 -1 . . . scaffold41318 WUBlastX LINE_RTE-X 51829 51933 40 + . . . . . -1 -1 -1 . . . scaffold1877 WUBlastX LINE_RTE-X 123569 123901 45 + . . . . . -1 -1 -1 . . . scaffold421 WUBlastX LINE_RTE-X 187358 187555 31 + . . scaffold421 GLEAN mRNA 182657 200231 1 + . ID=CGI_10012156; scaffold625 WUBlastX LINE_RTE-X 164317 164373 20 - . . . . . -1 -1 -1 . . . scaffold721 WUBlastX LINE_RTE-X 486684 486962 40 - . . . . . -1 -1 -1 . . . scaffold115 WUBlastX LINE_RTE-X 176904 176969 37 + . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LINE_RTE-X 44797 44895 21 - . . . . . -1 -1 -1 . . . scaffold41466 WUBlastX DNA_PiggyBac 31439 31543 21 - . . scaffold41466 GLEAN mRNA 21923 33174 0.891512 + . ID=CGI_10005137; scaffold41466 WUBlastX DNA_PiggyBac 31611 31703 47 - . . scaffold41466 GLEAN mRNA 21923 33174 0.891512 + . ID=CGI_10005137; scaffold730 WUBlastX DNA_Maverick 102610 103080 23 - . . scaffold730 GLEAN mRNA 102559 103008 0.69447 - . ID=CGI_10019887; scaffold40438 WUBlastX DNA_Maverick 83538 83972 44 + . . . . . -1 -1 -1 . . . scaffold35988 WUBlastX DNA_Maverick 10962 11033 26 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_Maverick 36051 36398 42 - . . . . . -1 -1 -1 . . . scaffold489 WUBlastX LTR_ERVK 531403 531495 44 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_ERVK 299114 299206 44 + . . . . . -1 -1 -1 . . . scaffold43844 WUBlastX LTR_ERVK 313673 313933 20 - . . . . . -1 -1 -1 . . . scaffold1064 WUBlastX DNA_MuDR 147339 147458 49 - . . . . . -1 -1 -1 . . . scaffold780 WUBlastX LINE_RTE-X 667463 667570 56 - . . . . . -1 -1 -1 . . . scaffold42674 WUBlastX LINE_RTE-BovB 175716 176267 49 - . . scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold716 WUBlastX LINE_RTE-X 233623 233886 21 + . . . . . -1 -1 -1 . . . scaffold1341 WUBlastX LINE_L1 5598 5750 23 - . . scaffold1341 GLEAN mRNA 4451 30218 0.992186 + . ID=CGI_10004662; scaffold1864 WUBlastX LINE_RTE-X 31014 31196 32 - . . scaffold1864 GLEAN mRNA 28119 34115 0.552482 - . ID=CGI_10004430; scaffold43258 WUBlastX DNA_TcMar-Marin 93181 93309 42 - . . scaffold43258 GLEAN mRNA 90747 124672 0.523441 + . ID=CGI_10009633; scaffold950 WUBlastX DNA_TcMar-Pogo 159203 159517 30 + . . scaffold950 GLEAN mRNA 159231 177477 0.94663 + . ID=CGI_10022923; scaffold252 WUBlastX LTR_Ngaro 213823 213993 27 - . . . . . -1 -1 -1 . . . scaffold1638 WUBlastX LTR_Gypsy 129138 129665 25 + . . scaffold1638 GLEAN mRNA 127640 129695 0.999676 + . ID=CGI_10007425; scaffold1638 WUBlastX LTR_Gypsy 131145 131672 25 + . . scaffold1638 GLEAN mRNA 130635 131702 0.999984 + . ID=CGI_10007426; scaffold22 WUBlastX LTR_Gypsy 1819567 1819881 25 + . . scaffold22 GLEAN mRNA 1819528 1821088 0.988961 + . ID=CGI_10028935; scaffold807 WUBlastX LTR_Gypsy 258330 258857 25 - . . scaffold807 GLEAN mRNA 258300 259367 0.999984 - . ID=CGI_10011463; scaffold1024 WUBlastX DNA_TcMar-Tc1 1472842 1473051 38 + . . . . . -1 -1 -1 . . . scaffold43662 WUBlastX DNA_TcMar-Tc1 29226 29378 22 + . . . . . -1 -1 -1 . . . scaffold43064 WUBlastX DNA_TcMar-Tc1 167509 167784 40 - . . scaffold43064 GLEAN mRNA 165128 188165 0.499838 + . ID=CGI_10008633; scaffold332 WUBlastX DNA_TcMar-Tc1 470880 471035 41 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1-Tx1 433538 433681 76 + . . . . . -1 -1 -1 . . . scaffold138 WUBlastX LINE_L1-Tx1 29733 29906 43 - . . scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold335 WUBlastX LINE_L1 468852 469100 39 - . . . . . -1 -1 -1 . . . scaffold678 WUBlastX LINE_Jockey 591204 591272 29 + . . . . . -1 -1 -1 . . . scaffold35926 WUBlastX LINE_L1-Tx1 24332 24553 58 - . . . . . -1 -1 -1 . . . scaffold426 WUBlastX LINE_L1-Tx1 95423 95581 30 - . . . . . -1 -1 -1 . . . C34846 WUBlastX DNA_Zator 16137 16322 61 + . . . . . -1 -1 -1 . . . scaffold1796 WUBlastX LTR_Gypsy 59781 60062 22 + . . . . . -1 -1 -1 . . . C35606 WUBlastX LTR_Copia 7111 7554 65 - . . . . . -1 -1 -1 . . . scaffold41390 WUBlastX LTR_Copia 71413 71490 38 + . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LTR_Copia 1454647 1454730 21 + . . . . . -1 -1 -1 . . . scaffold21 WUBlastX LTR_Copia 13566 13943 22 - . . . . . -1 -1 -1 . . . scaffold165 WUBlastX LTR_Copia 33292 33720 21 + . . scaffold165 GLEAN mRNA 33307 33933 1 + . ID=CGI_10015309; scaffold1424 WUBlastX LTR_Gypsy-Cigr 80878 80952 25 + . . . . . -1 -1 -1 . . . scaffold1525 WUBlastX LTR_Pao 277125 277355 39 - . . scaffold1525 GLEAN mRNA 276942 293191 0.993853 - . ID=CGI_10013865; scaffold313 WUBlastX LTR_Pao 1141249 1141578 61 - . . scaffold313 GLEAN mRNA 1139830 1142218 0.91163 - . ID=CGI_10026640; scaffold1301 WUBlastX LTR_Pao 669876 669959 31 + . . . . . -1 -1 -1 . . . scaffold1301 WUBlastX LTR_Pao 669958 670098 46 + . . . . . -1 -1 -1 . . . scaffold99 WUBlastX LTR_Pao 169030 169590 20 - . . . . . -1 -1 -1 . . . scaffold157 WUBlastX LTR_Pao 649232 649333 56 + . . . . . -1 -1 -1 . . . scaffold42770 WUBlastX LINE_LOA 59202 59555 56 - . . . . . -1 -1 -1 . . . scaffold40948 WUBlastX LINE_L1 27686 27766 25 - . . scaffold40948 GLEAN mRNA 20895 33912 0.999675 - . ID=CGI_10004610; scaffold44064 WUBlastX LTR_Pao 8003 8188 47 + . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_PiggyBac 757193 757315 76 + . . . . . -1 -1 -1 . . . scaffold432 WUBlastX DNA_hAT 369788 369895 56 + . . scaffold432 GLEAN mRNA 366486 371092 0.544852 + . ID=CGI_10023101; scaffold432 WUBlastX DNA_hAT 370029 370154 28 + . . scaffold432 GLEAN mRNA 366486 371092 0.544852 + . ID=CGI_10023101; scaffold241 WUBlastX DNA_TcMar-Fot1 288205 288576 52 - . . scaffold241 GLEAN mRNA 288013 288459 0.999802 - . ID=CGI_10025101; scaffold718 WUBlastX DNA_TcMar-Fot1 205176 205427 53 + . . . . . -1 -1 -1 . . . scaffold42302 WUBlastX DNA_hAT-Tip100 120901 121128 61 + . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX DNA_hAT-Ac 25147 25308 50 - . . . . . -1 -1 -1 . . . scaffold100 WUBlastX LTR_Gypsy 542502 543020 55 - . . . . . -1 -1 -1 . . . scaffold1127 WUBlastX LTR_Copia 245839 245892 24 + . . scaffold1127 GLEAN mRNA 233331 246292 0.999949 + . ID=CGI_10010656; scaffold43136 WUBlastX LINE_CR1-L2 15167 15313 31 + . . . . . -1 -1 -1 . . . scaffold184 WUBlastX LINE_CR1-L2 346958 347146 38 + . . . . . -1 -1 -1 . . . scaffold39364 WUBlastX LINE_CR1-L2 1338 1433 64 + . . . . . -1 -1 -1 . . . scaffold107 WUBlastX LINE_CR1-L2 772478 772630 39 + . . . . . -1 -1 -1 . . . scaffold1571 WUBlastX LINE_L2 251882 251920 23 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L2 655221 655322 24 - . . . . . -1 -1 -1 . . . scaffold42990 WUBlastX LINE_CR1-L2 94829 95026 69 + . . . . . -1 -1 -1 . . . scaffold507 WUBlastX LINE_CR1-L2 271176 271298 26 + . . scaffold507 GLEAN mRNA 254357 273838 0.999949 - . ID=CGI_10019093; scaffold3 WUBlastX LINE_CR1-L2 893484 894026 33 + . . . . . -1 -1 -1 . . . scaffold290 WUBlastX LINE_L2 309938 310240 39 + . . . . . -1 -1 -1 . . . scaffold321 WUBlastX LINE_L2 376692 376991 36 - . . scaffold321 GLEAN mRNA 375881 377069 1 - . ID=CGI_10020809; scaffold422 WUBlastX LINE_CR1-L2 35092 35436 20 - . . . . . -1 -1 -1 . . . scaffold34740 WUBlastX LINE_CR1-L2 7936 8043 35 + . . . . . -1 -1 -1 . . . scaffold40194 WUBlastX LINE_CR1 52766 53038 47 - . . . . . -1 -1 -1 . . . scaffold1403 WUBlastX LINE_CR1 393159 394067 22 + . . scaffold1403 GLEAN mRNA 387771 394517 0.662471 + . ID=CGI_10020172; scaffold88 WUBlastX LINE_CR1 213332 213502 40 - . . . . . -1 -1 -1 . . . scaffold42060 WUBlastX LINE_L2 57983 58120 34 - . . . . . -1 -1 -1 . . . scaffold86 WUBlastX LINE_L2 696516 696608 29 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LINE_CR1 808291 808491 48 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX LINE_CR1 298695 298838 47 + . . . . . -1 -1 -1 . . . scaffold40342 WUBlastX LINE_L2 650 784 66 + . . . . . -1 -1 -1 . . . scaffold323 WUBlastX LINE_L2 129883 130017 66 + . . . . . -1 -1 -1 . . . scaffold38804 WUBlastX LINE_CR1 32441 32500 25 - . . scaffold38804 GLEAN mRNA 25991 34532 0.371949 - . ID=CGI_10002976; scaffold1349 WUBlastX LINE_L2 156491 156592 30 - . . scaffold1349 GLEAN mRNA 152213 163211 0.538893 - . ID=CGI_10009942; scaffold1349 WUBlastX LINE_L2 156744 156908 34 - . . scaffold1349 GLEAN mRNA 152213 163211 0.538893 - . ID=CGI_10009942; scaffold177 WUBlastX LINE_L2 196059 196547 32 + . . . . . -1 -1 -1 . . . scaffold1253 WUBlastX LINE_CR1 52949 53152 47 + . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX LINE_L2 2375 2473 39 + . . . . . -1 -1 -1 . . . scaffold1623 WUBlastX LINE_L2 36215 36445 42 - . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LINE_CR1 35907 36170 54 + . . . . . -1 -1 -1 . . . scaffold737 WUBlastX LINE_CR1 93202 93300 22 + . . . . . -1 -1 -1 . . . scaffold991 WUBlastX LTR_Gypsy 13899 14051 68 - . . . . . -1 -1 -1 . . . C27890 WUBlastX LTR_Gypsy 3312 3581 26 - . . . . . -1 -1 -1 . . . scaffold43272 WUBlastX LTR_Gypsy 178705 178932 71 - . . . . . -1 -1 -1 . . . scaffold514 WUBlastX LTR_Gypsy 87698 87862 26 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold150 WUBlastX LTR_Ngaro 803492 803806 50 + . . . . . -1 -1 -1 . . . scaffold1322 WUBlastX LTR_Ngaro 298915 299025 69 - . . scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold351 WUBlastX LTR_DIRS 253107 253229 27 + . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX LTR_DIRS 1710 1982 24 - . . . . . -1 -1 -1 . . . scaffold433 WUBlastX LTR_Ngaro 11451 11717 69 - . . . . . -1 -1 -1 . . . scaffold1817 WUBlastX LINE_L2 99235 99333 27 - . . . . . -1 -1 -1 . . . scaffold317 WUBlastX DNA?_Crypton? 118761 119006 53 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 117197 117364 23 - . . scaffold204 GLEAN mRNA 100079 117763 0.991044 - . ID=CGI_10026094; C33260 WUBlastX LTR_DIRS 3401 3598 36 + . . . . . -1 -1 -1 . . . scaffold1117 WUBlastX DNA_Crypton 57309 57824 44 - . . . . . -1 -1 -1 . . . scaffold1825 WUBlastX LINE_L2 159910 160122 76 + . . scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold1816 WUBlastX LINE_L2 120106 120333 46 + . . scaffold1816 GLEAN mRNA 110695 122090 0.998785 + . ID=CGI_10014398; scaffold750 WUBlastX LINE_L2 224444 224764 53 - . . . . . -1 -1 -1 . . . scaffold552 WUBlastX LINE_L2 75750 75797 22 - . . . . . -1 -1 -1 . . . scaffold1222 WUBlastX LINE_L2 136465 136788 41 - . . scaffold1222 GLEAN mRNA 134214 152280 0.999999 + . ID=CGI_10016238; scaffold1844 WUBlastX LINE_L2 137114 137233 21 + . . . . . -1 -1 -1 . . . scaffold267 WUBlastX LTR_DIRS 115684 115821 60 - . . . . . -1 -1 -1 . . . scaffold1810 WUBlastX LTR_DIRS 49741 49842 24 + . . . . . -1 -1 -1 . . . scaffold22 WUBlastX LTR_Ngaro 1564935 1565429 29 - . . . . . -1 -1 -1 . . . scaffold664 WUBlastX LTR_Ngaro 497070 497231 40 - . . . . . -1 -1 -1 . . . scaffold1589 WUBlastX LTR_Ngaro 788422 788778 20 - . . . . . -1 -1 -1 . . . scaffold1045 WUBlastX LTR_Ngaro 1348 1467 50 - . . . . . -1 -1 -1 . . . scaffold967 WUBlastX LTR_Gypsy 144020 144415 52 - . . scaffold967 GLEAN mRNA 143924 144238 0.999304 - . ID=CGI_10015456; scaffold396 WUBlastX LTR_Gypsy 213389 213787 54 - . . . . . -1 -1 -1 . . . scaffold1680 WUBlastX LTR_Gypsy 69782 70291 64 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold62 WUBlastX LTR_Gypsy 367241 367333 29 + . . . . . -1 -1 -1 . . . scaffold1352 WUBlastX LTR_Gypsy 85069 85290 71 + . . . . . -1 -1 -1 . . . scaffold1080 WUBlastX DNA_En-Spm 171065 171310 34 - . . . . . -1 -1 -1 . . . scaffold38364 WUBlastX LTR_Gypsy 13569 13922 71 + . . scaffold38364 GLEAN mRNA 13434 14450 0.986568 + . ID=CGI_10002730; scaffold934 WUBlastX LTR_Gypsy 293567 293653 23 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX DNA_TcMar-Fot1 324276 324443 38 + . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LTR_Gypsy 101065 101385 48 + . . . . . -1 -1 -1 . . . scaffold41210 WUBlastX LTR_Gypsy 102673 102702 27 + . . scaffold41210 GLEAN mRNA 102622 102807 0.732703 + . ID=CGI_10004806; scaffold86 WUBlastX LTR_Gypsy 1277453 1278139 41 - . . scaffold86 GLEAN mRNA 1231261 1279248 0.605603 + . ID=CGI_10028197; scaffold361 WUBlastX LTR_Gypsy 103248 103394 26 - . . . . . -1 -1 -1 . . . scaffold198 WUBlastX LTR_Gypsy 604542 604967 26 + . . . . . -1 -1 -1 . . . scaffold204 WUBlastX LTR_Gypsy 882900 883466 25 - . . . . . -1 -1 -1 . . . scaffold1750 WUBlastX LTR_Gypsy 564522 564962 49 - . . . . . -1 -1 -1 . . . scaffold242 WUBlastX LTR_Gypsy 128787 128966 33 + . . scaffold242 GLEAN mRNA 126246 129428 0.931496 + . ID=CGI_10007086; scaffold1885 WUBlastX LTR_Gypsy 237467 237994 42 + . . . . . -1 -1 -1 . . . scaffold794 WUBlastX DNA_Harbinger 264524 264670 48 + . . . . . -1 -1 -1 . . . scaffold20 WUBlastX DNA_Harbinger 81375 81578 54 - . . . . . -1 -1 -1 . . . scaffold43396 WUBlastX DNA_Harbinger 189268 189459 61 + . . scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold394 WUBlastX DNA_Harbinger 493410 493547 42 + . . scaffold394 GLEAN mRNA 488659 515899 0.813951 - . ID=CGI_10022088; scaffold156 WUBlastX DNA_Harbinger 71716 71976 66 - . . . . . -1 -1 -1 . . . scaffold41472 WUBlastX DNA_Harbinger 14493 14918 24 + . . scaffold41472 GLEAN mRNA 5767 21457 0.999674 - . ID=CGI_10005140; scaffold317 WUBlastX DNA_Harbinger 170966 171187 71 - . . . . . -1 -1 -1 . . . C29272 WUBlastX DNA_Harbinger 1602 1910 45 - . . . . . -1 -1 -1 . . . scaffold760 WUBlastX DNA_Harbinger 872316 872456 40 + . . scaffold760 GLEAN mRNA 869090 882371 0.544755 + . ID=CGI_10024019; scaffold1345 WUBlastX LINE_L1 396339 396623 31 - . . scaffold1345 GLEAN mRNA 390905 398842 0.996685 - . ID=CGI_10016288; scaffold38704 WUBlastX LTR_Gypsy 53248 53388 57 - . . . . . -1 -1 -1 . . . scaffold867 WUBlastX LTR_Gypsy 951839 952060 69 - . . . . . -1 -1 -1 . . . scaffold40556 WUBlastX LTR_Gypsy 88583 89074 37 - . . scaffold40556 GLEAN mRNA 88418 88975 0.618241 - . ID=CGI_10004254; scaffold1232 WUBlastX LTR_Gypsy 326465 326641 24 - . . . . . -1 -1 -1 . . . scaffold1753 WUBlastX LTR_Gypsy 35121 35522 20 - . . . . . -1 -1 -1 . . . scaffold1706 WUBlastX LTR_Gypsy 78444 78563 23 + . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LTR_Gypsy 135350 135565 27 - . . . . . -1 -1 -1 . . . scaffold42922 WUBlastX LTR_Gypsy 1509 1727 85 - . . . . . -1 -1 -1 . . . scaffold520 WUBlastX LTR_Gypsy 61424 61762 41 - . . . . . -1 -1 -1 . . . scaffold1221 WUBlastX LTR_Gypsy 8048 8317 42 - . . scaffold1221 GLEAN mRNA 6329 8222 0.996819 - . ID=CGI_10019721; scaffold925 WUBlastX LTR_Gypsy 502708 502803 29 - . . . . . -1 -1 -1 . . . scaffold1237 WUBlastX LTR_Gypsy 258252 258395 21 + . . scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold40366 WUBlastX LTR_Gypsy 86228 86311 25 - . . . . . -1 -1 -1 . . . scaffold1009 WUBlastX LTR_Gypsy 462419 462898 38 - . . . . . -1 -1 -1 . . . scaffold773 WUBlastX LTR_Gypsy 272008 272388 85 + . . . . . -1 -1 -1 . . . scaffold1706 WUBlastX LTR_Gypsy 78444 78539 44 + . . . . . -1 -1 -1 . . . scaffold298 WUBlastX LTR_Gypsy 285056 285328 47 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX DNA_IS4EU 446990 447109 33 - . . . . . -1 -1 -1 . . . scaffold382 WUBlastX DNA_IS4EU 5506 5832 62 - . . . . . -1 -1 -1 . . . scaffold767 WUBlastX DNA_IS4EU 100844 101035 56 - . . . . . -1 -1 -1 . . . scaffold1741 WUBlastX DNA_IS4EU 609859 610026 29 + . . scaffold1741 GLEAN mRNA 575954 614216 0.201236 + . ID=CGI_10024047; scaffold1639 WUBlastX DNA_IS4EU 83241 83354 38 - . . scaffold1639 GLEAN mRNA 82644 83780 1 - . ID=CGI_10005439; scaffold82 WUBlastX DNA_IS4EU 634660 634911 50 - . . . . . -1 -1 -1 . . . scaffold1896 WUBlastX LINE_I 66811 66951 56 + . . scaffold1896 GLEAN mRNA 47123 84507 0.989491 + . ID=CGI_10019634; C24566 WUBlastX LINE_Tad1? 715 768 25 + . . . . . -1 -1 -1 . . . scaffold1570 WUBlastX LTR_ERV1 46122 46481 63 - . . . . . -1 -1 -1 . . . scaffold43406 WUBlastX LTR_ERV1 149305 149532 22 + . . . . . -1 -1 -1 . . . scaffold1459 WUBlastX LINE_I 131636 132112 49 + . . . . . -1 -1 -1 . . . scaffold681 WUBlastX DNA_IS4EU 304222 304374 25 - . . . . . -1 -1 -1 . . . scaffold274 WUBlastX DNA_Kolobok-IS4 308063 308329 42 - . . . . . -1 -1 -1 . . . scaffold34356 WUBlastX DNA_IS4EU 9137 9307 31 - . . . . . -1 -1 -1 . . . scaffold962 WUBlastX DNA_Kolobok-IS4 122622 122837 44 + . . . . . -1 -1 -1 . . . scaffold1788 WUBlastX RC_Helitron 45691 45933 30 - . . scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold42448 WUBlastX RC_Helitron 30050 30220 64 - . . . . . -1 -1 -1 . . . scaffold517 WUBlastX RC_Helitron 220967 221299 45 + . . . . . -1 -1 -1 . . . scaffold41834 WUBlastX RC_Helitron 131310 131573 34 + . . . . . -1 -1 -1 . . . scaffold269 WUBlastX RC_Helitron 478046 478129 31 + . . . . . -1 -1 -1 . . . scaffold1554 WUBlastX RC_Helitron 273396 273626 38 + . . . . . -1 -1 -1 . . . scaffold1671 WUBlastX RC_Helitron 221442 221831 29 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 222780 222869 26 + . . scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1599 WUBlastX LINE_R2-Hero 522207 522413 56 - . . . . . -1 -1 -1 . . . C13946 WUBlastX DNA_hAT-Ac 7 129 42 - . . . . . -1 -1 -1 . . . C13946 WUBlastX DNA_hAT-Ac 123 233 34 - . . . . . -1 -1 -1 . . . scaffold41794 WUBlastX DNA_hAT-Tip100 95736 96017 28 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_hAT-Tip100 358789 358974 30 + . . scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold485 WUBlastX DNA_hAT-Tip100 878289 878516 51 + . . . . . -1 -1 -1 . . . scaffold1541 WUBlastX DNA_hAT-Tip100 375270 375413 75 - . . scaffold1541 GLEAN mRNA 363847 377632 0.999999 - . ID=CGI_10017897; scaffold41786 WUBlastX DNA_hAT-Tip100 111589 111762 61 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold39212 WUBlastX DNA_hAT-Tip100 54215 55078 53 - . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold1077 WUBlastX DNA_hAT 1101 1433 23 - . . . . . -1 -1 -1 . . . C28772 WUBlastX DNA_hAT-Blackja 3000 3125 29 - . . . . . -1 -1 -1 . . . scaffold896 WUBlastX LINE_Jockey 123653 123814 44 + . . scaffold896 GLEAN mRNA 120712 129433 0.394415 + . ID=CGI_10022834; scaffold442 WUBlastX DNA_Kolobok-IS4 13118 13321 49 + . . . . . -1 -1 -1 . . . scaffold1885 WUBlastX LINE_L1-Tx1 50457 50558 38 - . . . . . -1 -1 -1 . . . scaffold783 WUBlastX LINE_L1-Tx1 287514 287648 21 + . . scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold481 WUBlastX DNA_Kolobok 1005707 1005844 46 + . . . . . -1 -1 -1 . . . scaffold626 WUBlastX DNA_Kolobok 584409 584591 35 - . . . . . -1 -1 -1 . . . scaffold348 WUBlastX DNA_Kolobok 720201 720326 59 + . . scaffold348 GLEAN mRNA 715076 738533 0.987905 - . ID=CGI_10023001; scaffold659 WUBlastX DNA_P 11285 11830 29 + . . scaffold659 GLEAN mRNA 29 26278 0.692942 + . ID=CGI_10014692; scaffold1255 WUBlastX DNA_P 7871 8230 42 - . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1016 WUBlastX DNA_P 283867 284538 43 - . . scaffold1016 GLEAN mRNA 272595 292035 0.804509 - . ID=CGI_10016891; scaffold191 WUBlastX DNA_hAT-Tip100 511911 512087 50 - . . . . . -1 -1 -1 . . . scaffold38678 WUBlastX DNA_hAT-Tip100 2141 2317 50 - . . . . . -1 -1 -1 . . . scaffold712 WUBlastX LINE_Penelope 87771 88046 27 - . . . . . -1 -1 -1 . . . scaffold616 WUBlastX LINE_Penelope 401433 401651 48 + . . . . . -1 -1 -1 . . . scaffold1345 WUBlastX LINE_Penelope 179606 179719 74 - . . . . . -1 -1 -1 . . . scaffold964 WUBlastX LINE_Penelope 30064 30327 35 + . . . . . -1 -1 -1 . . . scaffold1053 WUBlastX LINE_Penelope 25832 26269 24 + . . scaffold1053 GLEAN mRNA 8937 30128 0.621486 - . ID=CGI_10014292; scaffold705 WUBlastX LINE_Penelope 344889 344951 34 - . . scaffold705 GLEAN mRNA 340127 351838 0.495675 + . ID=CGI_10015517; scaffold329 WUBlastX DNA_NOF 96961 97044 30 - . . . . . -1 -1 -1 . . . scaffold329 WUBlastX DNA_NOF 97623 97787 41 - . . . . . -1 -1 -1 . . . scaffold43296 WUBlastX LTR_ERV1 121521 121862 30 - . . scaffold43296 GLEAN mRNA 94377 121610 0.537251 - . ID=CGI_10009743; scaffold1624 WUBlastX LINE_Penelope 93765 94076 30 - . . . . . -1 -1 -1 . . . scaffold793 WUBlastX LINE_Penelope 71962 72099 45 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold1750 WUBlastX LINE_Penelope 599348 599500 71 - . . . . . -1 -1 -1 . . . scaffold42790 WUBlastX LINE_Penelope 177131 177262 49 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_CR1 412953 413369 55 + . . . . . -1 -1 -1 . . . scaffold925 WUBlastX DNA_TcMar-Marin 452274 452426 42 + . . . . . -1 -1 -1 . . . scaffold587 WUBlastX DNA_TcMar-Stowa 2562 2816 60 + . . scaffold587 GLEAN mRNA 1966 7737 0.999375 - . ID=CGI_10006887; scaffold1670 WUBlastX DNA_TcMar-Marin 44050 44184 46 - . . scaffold1670 GLEAN mRNA 20416 44429 0.542324 + . ID=CGI_10017595; scaffold37532 WUBlastX DNA_TcMar-Marin 42912 43196 52 - . . scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold226 WUBlastX DNA_TcMar-Fot1 337739 338056 71 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX DNA_TcMar-Marin 44906 44935 32 + . . . . . -1 -1 -1 . . . scaffold621 WUBlastX DNA_TcMar-Marin 45189 45317 42 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX DNA_TcMar-Marin 566043 566171 50 + . . . . . -1 -1 -1 . . . scaffold1104 WUBlastX DNA_TcMar-Marin 566495 566593 29 + . . . . . -1 -1 -1 . . . scaffold471 WUBlastX LINE_L1 385017 385142 43 + . . . . . -1 -1 -1 . . . scaffold1599 WUBlastX LINE_L1 594826 595146 27 + . . . . . -1 -1 -1 . . . C32838 WUBlastX LINE_L1 6608 6895 61 - . . . . . -1 -1 -1 . . . scaffold150 WUBlastX LINE_L1 187828 187959 59 + . . . . . -1 -1 -1 . . . scaffold77 WUBlastX LINE_L1 419137 419367 45 + . . . . . -1 -1 -1 . . . scaffold1473 WUBlastX LINE_L1 67701 67787 34 - . . . . . -1 -1 -1 . . . scaffold41740 WUBlastX LINE_L1 1597 1986 46 - . . . . . -1 -1 -1 . . . scaffold1791 WUBlastX LINE_L1 67577 67939 32 + . . scaffold1791 GLEAN mRNA 66923 91200 0.835531 + . ID=CGI_10007866; scaffold766 WUBlastX LINE_L1 64394 64648 42 - . . . . . -1 -1 -1 . . . C31396 WUBlastX LINE_L1 660 773 23 + . . . . . -1 -1 -1 . . . scaffold58 WUBlastX LINE_L1-Tx1 335000 335296 49 - . . . . . -1 -1 -1 . . . scaffold343 WUBlastX LINE_L1 590736 591083 60 - . . . . . -1 -1 -1 . . . scaffold835 WUBlastX LINE_L1 210810 211259 23 - . . scaffold835 GLEAN mRNA 209952 211574 0.998234 - . ID=CGI_10016113; scaffold1584 WUBlastX LINE_L1-Tx1 43447 43803 55 - . . . . . -1 -1 -1 . . . scaffold280 WUBlastX LINE_L1 913964 914212 68 - . . . . . -1 -1 -1 . . . scaffold237 WUBlastX LINE_L1 29842 29982 42 + . . . . . -1 -1 -1 . . . scaffold1584 WUBlastX LINE_L1 20967 21182 56 + . . scaffold1584 GLEAN mRNA 17588 32625 0.463442 - . ID=CGI_10015070; scaffold482 WUBlastX LINE_L1 177706 177852 53 + . . . . . -1 -1 -1 . . . scaffold880 WUBlastX DNA_Kolobok-Hyd 617014 617352 23 - . . scaffold880 GLEAN mRNA 617251 619729 0.637182 - . ID=CGI_10022203; scaffold236 WUBlastX DNA_Kolobok 498652 498759 28 - . . . . . -1 -1 -1 . . . scaffold236 WUBlastX DNA_Kolobok 499488 499718 34 - . . . . . -1 -1 -1 . . . scaffold1815 WUBlastX DNA_Kolobok-Hyd 149791 149904 22 + . . . . . -1 -1 -1 . . . scaffold43842 WUBlastX DNA_IS4EU 249662 249715 29 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249662 249715 29 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold43842 WUBlastX DNA_IS4EU 249721 249906 54 + . . scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249721 249906 54 + . . scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold274 WUBlastX LINE_L1-Tx1 148 270 32 + . . . . . -1 -1 -1 . . . scaffold1634 WUBlastX LINE_Penelope 25964 26149 37 - . . scaffold1634 GLEAN mRNA 15859 29432 0.999999 - . ID=CGI_10005150; scaffold667 WUBlastX LINE_CR1 18439 18756 44 + . . scaffold667 GLEAN mRNA 6729 22533 0.999844 - . ID=CGI_10005354; scaffold730 WUBlastX LINE_RTE-X 487021 487086 34 + . . . . . -1 -1 -1 . . . scaffold942 WUBlastX LINE_RTE-X 160102 160293 20 + . . . . . -1 -1 -1 . . . C26532 WUBlastX LINE_RTE-BovB 377 745 30 - . . . . . -1 -1 -1 . . . scaffold334 WUBlastX LINE_RTE-X 165595 165663 24 - . . . . . -1 -1 -1 . . . scaffold53 WUBlastX LINE_RTE-X 926228 926413 32 - . . . . . -1 -1 -1 . . . scaffold1665 WUBlastX LINE_RTE-BovB 421190 421261 26 + . . . . . -1 -1 -1 . . . scaffold516 WUBlastX LINE_RTE-BovB 8373 8705 28 - . . . . . -1 -1 -1 . . . scaffold474 WUBlastX LINE_RTE-BovB 176621 176896 20 + . . scaffold474 GLEAN mRNA 173461 184050 0.256829 - . ID=CGI_10007598; scaffold184 WUBlastX LINE_RTE-BovB 327810 328199 54 - . . . . . -1 -1 -1 . . . scaffold72 WUBlastX LINE_RTE-X 470575 470739 39 - . . scaffold72 GLEAN mRNA 461855 471601 0.990886 + . ID=CGI_10017848; scaffold1281 WUBlastX LINE_RTE-BovB 3938 4135 43 - . . scaffold1281 GLEAN mRNA 1556 4031 0.999114 - . ID=CGI_10001419; scaffold1288 WUBlastX LINE_RTE-BovB 52511 52591 45 + . . . . . -1 -1 -1 . . . scaffold1288 WUBlastX LINE_RTE-BovB 52608 52676 31 + . . . . . -1 -1 -1 . . . scaffold853 WUBlastX LINE_RTE-BovB 279003 279197 56 - . . . . . -1 -1 -1 . . . scaffold1703 WUBlastX LINE_RTE-BovB 418737 419051 76 + . . scaffold1703 GLEAN mRNA 410303 422392 0.738334 - . ID=CGI_10023058; scaffold1725 WUBlastX LTR_Gypsy 49817 49900 47 + . . scaffold1725 GLEAN mRNA 49892 50281 0.999275 - . ID=CGI_10004730; scaffold926 WUBlastX LTR_Gypsy 23937 24020 47 - . . . . . -1 -1 -1 . . . scaffold481 WUBlastX LTR_Copia 1080699 1080833 40 + . . scaffold481 GLEAN mRNA 1067271 1084850 0.999364 + . ID=CGI_10027261; scaffold368 WUBlastX LTR_Gypsy 437270 437677 31 + . . . . . -1 -1 -1 . . . scaffold36684 WUBlastX DNA_Maverick 8832 8987 21 + . . . . . -1 -1 -1 . . . scaffold686 WUBlastX DNA_PiggyBac 32641 32751 38 + . . scaffold686 GLEAN mRNA 23498 37370 0.50665 - . ID=CGI_10004462; scaffold787 WUBlastX DNA_PiggyBac 83433 83642 27 + . . . . . -1 -1 -1 . . . scaffold42890 WUBlastX LINE_RTE-X 85531 85602 33 + . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 85531 85602 33 + . . scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold496 WUBlastX LINE_RTE-X 393709 393921 41 + . . . . . -1 -1 -1 . . . scaffold1900 WUBlastX LINE_RTE-X 105564 105890 33 - . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 238440 238592 28 + . . . . . -1 -1 -1 . . . scaffold43878 WUBlastX LINE_RTE-X 330735 331040 27 + . . . . . -1 -1 -1 . . . scaffold1625 WUBlastX LINE_RTE-X 100967 101221 55 + . . . . . -1 -1 -1 . . . scaffold793 WUBlastX LINE_RTE-X 263609 263701 72 - . . . . . -1 -1 -1 . . . scaffold754 WUBlastX LINE_RTE-X 258025 258123 66 + . . . . . -1 -1 -1 . . . scaffold39880 WUBlastX LINE_RTE-X 42714 42893 52 + . . . . . -1 -1 -1 . . . C30820 WUBlastX LINE_RTE-X 8014 8217 27 - . . . . . -1 -1 -1 . . . scaffold1619 WUBlastX LINE_RTE-BovB 235824 236057 44 - . . . . . -1 -1 -1 . . . scaffold1722 WUBlastX LINE_RTE-BovB 293537 293692 40 + . . . . . -1 -1 -1 . . . scaffold43446 WUBlastX LINE_RTE-X 138295 138444 56 - . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LINE_RTE-X 32601 32768 27 - . . . . . -1 -1 -1 . . . scaffold939 WUBlastX LINE_RTE-X 33052 33147 25 - . . . . . -1 -1 -1 . . . scaffold370 WUBlastX LINE_RTE-X 746203 746388 33 + . . . . . -1 -1 -1 . . . scaffold78 WUBlastX LINE_RTE-X 128337 128474 29 + . . scaffold78 GLEAN mRNA 127507 134383 0.999992 - . ID=CGI_10006916; scaffold113 WUBlastX LINE_RTE-X 173083 173190 51 - . . scaffold113 GLEAN mRNA 167918 175905 0.777732 + . ID=CGI_10021288; scaffold43726 WUBlastX LINE_RTE-X 193091 193216 46 + . . scaffold43726 GLEAN mRNA 189584 195489 0.999572 - . ID=CGI_10012025; scaffold39974 WUBlastX LINE_RTE-X 67579 67989 49 + . . scaffold39974 GLEAN mRNA 67732 80297 0.969362 + . ID=CGI_10003760; scaffold337 WUBlastX LINE_RTE-X 89734 90090 35 + . . . . . -1 -1 -1 . . . scaffold288 WUBlastX LINE_RTE-X 104780 105199 32 + . . . . . -1 -1 -1 . . . C22628 WUBlastX LINE_RTE-X 355 660 32 + . . . . . -1 -1 -1 . . . scaffold508 WUBlastX LINE_RTE-X 98854 99189 41 + . . . . . -1 -1 -1 . . . scaffold1189 WUBlastX LINE_RTE-X 277648 277815 33 - . . . . . -1 -1 -1 . . . scaffold38884 WUBlastX LINE_RTE-X 31697 31840 56 + . . . . . -1 -1 -1 . . . scaffold394 WUBlastX LTR_Gypsy 554161 554403 25 + . . scaffold394 GLEAN mRNA 549658 560561 0.811205 + . ID=CGI_10022093; scaffold786 WUBlastX LTR_DIRS 200659 201093 63 - . . . . . -1 -1 -1 . . . scaffold1397 WUBlastX DNA_TcMar-Tc2 65846 66094 67 + . . . . . -1 -1 -1 . . . scaffold43280 WUBlastX DNA_Sola 29195 29470 22 - . . scaffold43280 GLEAN mRNA 27245 29335 1 - . ID=CGI_10009653; scaffold101 WUBlastX DNA_Sola 33666 34166 41 - . . scaffold101 GLEAN mRNA 33597 35334 0.999952 - . ID=CGI_10021632; scaffold1810 WUBlastX DNA_Sola 8123 8248 86 + . . scaffold1810 GLEAN mRNA 7368 11444 0.979898 + . ID=CGI_10007553; scaffold43878 WUBlastX LINE_RTE-X 79363 79464 30 - . . . . . -1 -1 -1 . . . scaffold40380 WUBlastX LINE_RTE-X 74720 74890 47 - . . . . . -1 -1 -1 . . . scaffold787 WUBlastX LINE_RTE-X 242077 242286 66 + . . scaffold787 GLEAN mRNA 219328 253031 0.970021 - . ID=CGI_10011650; scaffold1267 WUBlastX LINE_RTE-X 592531 592608 37 + . . . . . -1 -1 -1 . . . scaffold1267 WUBlastX LINE_RTE-X 592850 593017 33 + . . . . . -1 -1 -1 . . . C30632 WUBlastX DNA_Zator 687 845 47 + . . C30632 GLEAN mRNA 805 4646 0.999997 + . ID=CGI_10000645; scaffold1362 WUBlastX LINE_L1-Tx1 582641 582700 37 - . . . . . -1 -1 -1 . . . scaffold502 WUBlastX LINE_L1-Tx1 132160 132402 27 - . . . . . -1 -1 -1 . . . scaffold39142 WUBlastX LINE_L1-Tx1 673 873 64 + . . . . . -1 -1 -1 . . . scaffold1369 WUBlastX LINE_L1-Tx1 3819 4037 40 - . . . . . -1 -1 -1 . . . scaffold1857 WUBlastX LINE_L2 407417 407473 20 + . . . . . -1 -1 -1 . . . scaffold719 WUBlastX LINE_L1-Tx1 169331 169657 23 + . . scaffold719 GLEAN mRNA 161242 177672 0.53602 - . ID=CGI_10016002; scaffold120 WUBlastX LINE_L1-Tx1 318727 318939 36 - . . . . . -1 -1 -1 . . . scaffold575 WUBlastX LINE_L1-Tx1 139593 139886 64 + . . . . . -1 -1 -1 . . . scaffold3 WUBlastX LINE_L1-Tx1 324807 324851 26 - . . . . . -1 -1 -1 . . . scaffold38216 WUBlastX LINE_DRE 52242 52382 29 + . . . . . -1 -1 -1 . . . scaffold1213 WUBlastX DNA_Transib 669104 669283 58 - . . scaffold1213 GLEAN mRNA 659525 674092 0.331119 - . ID=CGI_10027461; scaffold117 WUBlastX DNA_TcMar-Tc1 355991 356095 53 + . . scaffold117 GLEAN mRNA 354523 361880 0.986806 - . ID=CGI_10016967; scaffold1009 WUBlastX DNA_TcMar-Tc2 1790325 1790603 20 + . . . . . -1 -1 -1 . . . scaffold983 WUBlastX DNA_TcMar-Tc1 369636 369770 26 - . . . . . -1 -1 -1 . . .
!{btd}intersectbed -wb \
-a /Volumes/web/cnidarian/Cgigas_v9_TE_WUBonly.gff \
-b /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_gene.gff \
> /Volumes/web/cnidarian/TE_WUBonly_inter_wb_gene.tab
!head /Volumes/web/cnidarian/TE_WUBonly_inter_wb_gene.tab
scaffold1328 WUBlastX LTR_Pao 311668 316782 3981 - . . scaffold1328 GLEAN mRNA 310802 321439 0.78586 - . ID=CGI_10012993; scaffold1750 WUBlastX LTR_Pao 621436 621780 318 + . . scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold156 WUBlastX LTR_Pao 59810 60643 511 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1350 WUBlastX LTR_Pao 451165 451542 74 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold156 WUBlastX LTR_Pao 56116 56754 595 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 56763 57113 367 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 60579 61241 303 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold1018 WUBlastX LTR_Pao 571085 573070 216 + . . scaffold1018 GLEAN mRNA 568631 598731 0.537907 - . ID=CGI_10019780; scaffold1328 WUBlastX LTR_Pao 317257 317523 58 - . . scaffold1328 GLEAN mRNA 310802 321439 0.78586 - . ID=CGI_10012993; scaffold156 WUBlastX LTR_Pao 59305 59772 285 - . . scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475;
!awk '{print $3, $18'} /Volumes/web/cnidarian/TE_WUBonly_inter_wb_gene.tab | \
sed 's/ID=C/C/g' | \
sed 's/;//g' > /Volumes/web/cnidarian/TE_WUBonly_CGI.txt
!head /Volumes/web/cnidarian/TE_WUBonly_CGI.txt
LTR_Pao CGI_10012993 LTR_Pao CGI_10021499 LTR_Pao CGI_10026475 LTR_Pao CGI_10017319 LTR_Pao CGI_10026475 LTR_Pao CGI_10026475 LTR_Pao CGI_10026475 LTR_Pao CGI_10019780 LTR_Pao CGI_10012993 LTR_Pao CGI_10026475
!wc -l /Volumes/web/cnidarian/TE_WUBonly_CGI.txt
14035 /Volumes/web/cnidarian/TE_WUBonly_CGI.txt
!echo TE ID > title
!cat title /Volumes/web/cnidarian/TE_WUBonly_CGI.txt > /Volumes/web/cnidarian/TE_WUBonly_CGI_b.txt
/Volumes/web/cnidarian/TE_CGI.txt
!echo TE ID > title
!cat title /Volumes/web/cnidarian/TE_CGI.txt > /Volumes/web/cnidarian/TE_CGI_b.txt
!head /Volumes/web/cnidarian/TE_WUBonly_CGI_b.txt
TE ID LTR_Pao CGI_10012993 LTR_Pao CGI_10021499 LTR_Pao CGI_10026475 LTR_Pao CGI_10017319 LTR_Pao CGI_10026475 LTR_Pao CGI_10026475 LTR_Pao CGI_10026475 LTR_Pao CGI_10019780 LTR_Pao CGI_10012993
!grep "CGI_10002390" /Volumes/web/cnidarian/TE_WUBonly_CGI_b.txt
LINE_CR1 CGI_10002390 LINE_CR1 CGI_10002390 LINE_CR1 CGI_10002390
sql = "/Users/sr320/sqlshare-pythonclient/tools/"
!python {sql}singleupload.py /Volumes/web/cnidarian/TE_WUBonly_CGI_b.txt
processing chunk line 0 to 14036 (0.00466203689575 s elapsed) pushing /Volumes/web/cnidarian/TE_WUBonly_CGI_b.txt... parsing 0F107798... finished TE_WUBonly_CGI_b.txt
!python {sql}singleupload.py /Volumes/web/cnidarian/TE_CGI_b.txt
processing chunk line 0 to 39845 (0.0118989944458 s elapsed) pushing /Volumes/web/cnidarian/TE_CGI_b.txt... parsing 5618DCA2... finished TE_CGI_b.txt
get GO slims
SELECT *
FROM [sr320@washington.edu].[TE_WUBonly_CGI_b.txt]b
left join
[sr320@washington.edu].[qDOD_Cgigas_GOslim_DISTINCT]ds
on
b.ID = ds.CGI_ID
!python {sql}fetchdata.py -s "SELECT * FROM [sr320@washington.edu].[TE_WUBonly_CGI_b.txt]b left join [sr320@washington.edu].[qDOD_Cgigas_GOslim_DISTINCT]ds on b.ID = ds.CGI_ID" -f tsv -o /Volumes/web/cnidarian/TE_WUBonly_CGI_GOslim.txt
!python {sql}fetchdata.py -s "SELECT * FROM [sr320@washington.edu].[TE_CGI_b.txt]b left join [sr320@washington.edu].[qDOD_Cgigas_GOslim_DISTINCT]ds on b.ID = ds.CGI_ID" -f tsv -o /Volumes/web/cnidarian/TE_CGI_GOslim.txt
!head /Volumes/web/cnidarian/TE_CGI_GOslim.txt
!head /Volumes/web/cnidarian/TE_WUBonly_CGI_GOslim.txt
import pandas
%%file TEloc.tab
GOslim count
other metabolic processes 1754
protein metabolism 1528
cell organization and biogenesis 1387
transport 1356
developmental processes 1347
signal transduction 1035
stress response 831
RNA metabolism 783
cell adhesion 706
death 630
cell cycle and proliferation 615
DNA metabolism 310
cell-cell signaling 210
Writing TEloc.tab
TE = pandas.read_table('TEloc.tab')
TE
GOslim | count | |
---|---|---|
0 | other metabolic processes | 1754 |
1 | protein metabolism | 1528 |
2 | cell organization and biogenesis | 1387 |
3 | transport | 1356 |
4 | developmental processes | 1347 |
5 | signal transduction | 1035 |
6 | stress response | 831 |
7 | RNA metabolism | 783 |
8 | cell adhesion | 706 |
9 | death | 630 |
10 | cell cycle and proliferation | 615 |
11 | DNA metabolism | 310 |
12 | cell-cell signaling | 210 |
13 rows × 2 columns
%%file Goslim.tab
GOslim count
other metabolic processes 4929
protein metabolism 3727
transport 3277
cell organization and biogenesis 2994
signal transduction 2990
developmental processes 2961
RNA metabolism 2452
stress response 1985
cell cycle and proliferation 1477
death 1428
cell adhesion 1069
DNA metabolism 666
cell-cell signaling 478
Writing Goslim.tab
slim = pandas.read_table('Goslim.tab')
slim
GOslim | count | |
---|---|---|
0 | other metabolic processes | 4929 |
1 | protein metabolism | 3727 |
2 | transport | 3277 |
3 | cell organization and biogenesis | 2994 |
4 | signal transduction | 2990 |
5 | developmental processes | 2961 |
6 | RNA metabolism | 2452 |
7 | stress response | 1985 |
8 | cell cycle and proliferation | 1477 |
9 | death | 1428 |
10 | cell adhesion | 1069 |
11 | DNA metabolism | 666 |
12 | cell-cell signaling | 478 |
13 rows × 2 columns
from IPython.display import HTML
HTML('<iframe src=http://eagle.fish.washington.edu/cnidarian/TE_goslim.htm width=400 height=650></iframe>')