summary - 3 oysters sampled pre and post heat shock
Hi Claire,
Attached is a plot that highlights the approach we have decided to
pursue... The plot shows the averaged ratio of IP/Input between HS and
pre-HS samples. As you'll note, the slope of this data in not ~1.0, but
is 0.45. Given the whole dataset shows this trend, I think it is safe
to assume that the difference in distributions seen by our earlier
assessment of box plots of this data points to an artifact - produced
either at the IP stage and/or the hyb stage. That said, I'm starting to
think that this is likely not a hyb/array issues... In any event, we
can simply adjust for this trend and proceed with the analysis. So doing
this adjustment and taking those HS probe values that are ≥1.8x the
pre-HS values (relative hyper-methylation highlighted in red) and those
HS probe values that are ≤-1.8x the pre-HS values (relative
hypo-methylation highlighted in green), we can create a list of relative
hyper- and hypo- methylated probes and map them back to the sequence
scaffolds.
Ryan has constructed two different results files using this approach...
-- He defined the gene+promoter locus to include 1000 bps upstream of
the gene body. The accompanying files list the relative hyper (and
hypo) probe densities within these loci, with a limit of 3 probes as a
cutoff. You will not that some genes show heavy hyper/hypo methylation
difference between the two states.
-- He also generated .gff files that show locations in which there are ≥
3 consecutive probes displaying relative hyper/hypo methylation
differences. These files can be viewed in a genome browser. Scaffolds
can be ID'ed by viewing these files in a text editor.
When you have a moment, I would greatly appreciate some feedback on the
emails I've sent you over the last week and whether this analysis is
helpful to you.
Best, Jeff
!cp /Volumes/web/cnidarian/2014.06.20.* /Users/sr320/git-repos/paper-Temp-stress/ipynb/data/
!head ./data/2014.06.20.lt1.8_gt3adjactentProbes.gff
!tail ./data/2014.06.20.lt1.8_gt3adjactentProbes.gff
!head ./data/2014.06.20.gt1.8_gt3adjactentProbes.gff
!wc ./data/2014.06.20.lt1.8_gt3adjactentProbes.gff
362 3258 25411 ./data/2014.06.20.lt1.8_gt3adjactentProbes.gff
!wc ./data/2014.06.20.gt1.8_gt3adjactentProbes.gff
164 1476 11557 ./data/2014.06.20.gt1.8_gt3adjactentProbes.gff
!cp /Volumes/web/cnidarian/2014.06* /Users/sr320/git-repos/paper-Temp-stress/ipynb/data
!head ./data/2014.06.04.hypermethylatedGenes.txt
Gene SigProbes Scaffold Start End Strand CGI_10024086 15 scaffold801 337024 342103 -1 CGI_10012609 10 scaffold186 87308 120464 1 CGI_10003625 9 scaffold1818 7577 57224 -1 CGI_10006042 9 scaffold42030 26108 31368 1 CGI_10024087 9 scaffold801 382870 386070 -1 CGI_10015914 8 scaffold1849 72001 112634 -1 CGI_10022621 8 scaffold351 668210 748966 1 CGI_10007181 7 scaffold1872 15235 46149 1 CGI_10015580 7 scaffold44006 227355 241371 -1
!head ./data/2014.06.04.hypomethylatedGenes.txt
Gene SigProbes Scaffold Start End Strand CGI_10013783 24 scaffold1409 123560 154776 -1 CGI_10022372 24 scaffold1710 602742 700546 1 CGI_10018592 22 scaffold247 138499 148449 1 CGI_10006142 21 scaffold1656 45907 74911 -1 CGI_10004002 20 scaffold40282 55091 83549 1 CGI_10022093 18 scaffold394 548658 560561 1 CGI_10012796 17 scaffold1237 200980 293560 1 CGI_10025876 17 scaffold733 407619 548638 1 CGI_10027815 17 scaffold198 531542 554203 1
cp /Volumes/web/cnidarian/2014.07* /Users/sr320/git-repos/paper-Temp-stress/ipynb/data
cp: /Volumes/web/cnidarian/2014.07.02.colson is a directory (not copied).
ls /Volumes/web/cnidarian/2014.*
/Volumes/web/cnidarian/2014.06.04.hypermethylatedGenes.txt* /Volumes/web/cnidarian/2014.06.04.hypomethylatedGenes.txt* /Volumes/web/cnidarian/2014.06.20.gt1.8_gt3adjactentProbes.gff* /Volumes/web/cnidarian/2014.06.20.lt1.8_gt3adjactentProbes.gff* /Volumes/web/cnidarian/2014.07.02.colson.zip* /Volumes/web/cnidarian/2014.07.02.colson: fullResultsTables/ genomeBrowserTracks/ genesWithThreeOrMoreSigProbes/ png/
!head /Users/sr320/git-repos/paper-Temp-stress/ipynb/data/2014.07.02.colson/genomeBrowserTracks/logFC_HS-preHS/2014.07.02.4M_sig.bedGraph
track type=bedGraph name="4M_sig" description="4M_sig" visibility=full color=100,100,0 altColor=0,100,200 priority=20 scaffold1 55723 55780 -1.14983078196614 scaffold1 162896 162952 1.31051906307266 scaffold1 165162 165215 -1.24601772855566 scaffold1 171392 171453 -1.22260744814979 scaffold1 174020 174073 1.13065801555915 scaffold1 174287 174343 -1.69319890151177 scaffold1 176273 176334 -1.72785163633438 scaffold1 178210 178267 1.2199265031441 scaffold1 183256 183318 -1.30551922539134
!head /Users/sr320/git-repos/paper-Temp-stress/ipynb/data/2014.07.02.colson/genomeBrowserTracks/logFC_HS-preHS/2014.07.02.4M.bedGraph
track type=bedGraph name="4M" description="4M" visibility=full color=100,100,0 altColor=0,100,200 priority=20 scaffold1 52347 52397 -0.607382638604216 scaffold1 52472 52522 -0.517778984565597 scaffold1 52597 52650 -0.614441888334089 scaffold1 52741 52798 -1.0125546293844 scaffold1 52851 52916 0.170736223516649 scaffold1 52996 53057 -1.05130751246805 scaffold1 53101 53153 -0.793057755493946 scaffold1 53241 53291 -0.661392663616478 scaffold1 53351 53406 -0.643892831771129
spd="/Users/sr320/sqlshare-pythonclient/tools/"
!python {spd}singleupload.py -d Cgigas_HSarray_hypo_genes /Volumes/web/cnidarian/2014.06.04.hypomethylatedGenes.txt
processing chunk line 0 to 465 (0.0248789787292 s elapsed) pushing /Volumes/web/cnidarian/2014.06.04.hypomethylatedGenes.txt... parsing 71B0D401... finished Cgigas_HSarray_hypo_genes
!python {spd}singleupload.py -d Cgigas_HSarray_hyper_genes /Volumes/web/cnidarian/2014.06.04.hypermethylatedGenes.txt
processing chunk line 0 to 284 (0.0216600894928 s elapsed) pushing /Volumes/web/cnidarian/2014.06.04.hypermethylatedGenes.txt... parsing 19E43B96... finished Cgigas_HSarray_hyper_genes
!python {spd}fetchdata.py -s "SELECT * FROM [sr320@washington.edu].[Cgigas_HSarray_hypo_genes]hypo left join [sr320@washington.edu].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp on hypo.Gene = sp.CGI_ID" -f tsv -o /Volumes/web/cnidarian/HSarray_hypo_spjoin.txt
!head /Volumes/web/cnidarian/HSarray_hypo_spjoin.txt
!python {spd}fetchdata.py -s "SELECT * FROM [sr320@washington.edu].[Cgigas_HSarray_hyper_genes]hyper left join [sr320@washington.edu].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp on hyper.Gene = sp.CGI_ID" -f tsv -o /Volumes/web/cnidarian/HSarray_hyper_spjoin.txt
!grep "%homeo%" /Volumes/web/cnidarian/HSarray_hyper_spjoin.txt
!python {spd}fetchdata.py -s "SELECT * FROM [sr320@washington.edu].[Cgigas_HSarray_hyper_genes]hyper left join [sr320@washington.edu].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp on hyper.Gene = sp.CGI_ID" -o /Volumes/NGS\ Drive/Google\ Drive/fan/HSarray_hyper_spjoing.csv
http://eagle.fish.washington.edu/cnidarian/HS_array_igv_session1.xml
#What is
ID="CGI_10024087"
!grep {ID} /Volumes/web/cnidarian/C_gigas_Ensemble_ID_qf.tab
output /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/
File "<ipython-input-7-a76c5ab2a281>", line 1 output /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/ ^ SyntaxError: invalid syntax
!pwd
/Volumes/web/cnidarian
!icd /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/{folder}
#!imv accepted_hits.bam z{id}_tophat.bam
#!imv bedtools_genomecov_output z{id}_th_genomecov.bedgraph
!iget -f z{id}_th_genomecov.bedgraph
!iget -f z{id}_tophat.bam
#!igvtools toTDF z{id}_th_genomecov.bedgraph z{id}_th_genomecov.bedgraph.tdf /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes
#!iput z{id}_th_genomecov.bedgraph.tdf
!igvtools toTDF z{id}_th_genomecov.bedgraph z{id}_th_genomecov.bedgraph.tdf /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes
!iput z{id}_th_genomecov.bedgraph.tdf
INFO [2014-07-02 14:57:58,579] [IgvTools.java:613] [main] toTDF. File = zMan1_th_genomecov.bedgraph toTDF. File = zMan1_th_genomecov.bedgraph INFO [2014-07-02 14:57:58,585] [IgvTools.java:614] [main] Max zoom = 7 Max zoom = 7 INFO [2014-07-02 14:57:58,586] [IgvTools.java:622] [main] Window functions: mean Window functions: mean INFO [2014-07-02 14:57:58,608] [GenomeManager.java:130] [main] Loading genome: /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes Loading genome: /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes INFO [2014-07-02 14:57:59,221] [DirectoryManager.java:149] [main] IGV Directory: /Users/sr320/igv IGV Directory: /Users/sr320/igv INFO [2014-07-02 14:57:59,260] [GenomeManager.java:174] [main] Genome loaded. id= /Volumes/web/cnidarian/cgigas_v9_genome03 Genome loaded. id= /Volumes/web/cnidarian/cgigas_v9_genome03 INFO [2014-07-02 14:57:59,728] [Preprocessor.java:241] [main] Processing chromosome C1 Processing chromosome C1 INFO [2014-07-02 14:57:59,935] [Preprocessor.java:241] [main] Processing chromosome C10009 Processing chromosome C10009 INFO [2014-07-02 14:58:00,406] [Preprocessor.java:241] [main] Processing chromosome C10015 Processing chromosome C10015 INFO [2014-07-02 14:58:00,664] [Preprocessor.java:241] [main] Processing chromosome C10033 Processing chromosome C10033 INFO [2014-07-02 14:58:00,760] [Preprocessor.java:241] [main] Processing chromosome C10043 Processing chromosome C10043 INFO [2014-07-02 14:58:00,938] [Preprocessor.java:241] [main] Processing chromosome C10047 Processing chromosome C10047 INFO [2014-07-02 14:58:01,002] [Preprocessor.java:241] [main] Processing chromosome C10053 Processing chromosome C10053 INFO [2014-07-02 14:58:01,164] [Preprocessor.java:241] [main] Processing chromosome C10057 Processing chromosome C10057 INFO [2014-07-02 14:58:01,234] [Preprocessor.java:241] [main] Processing chromosome C10091 Processing chromosome C10091 INFO [2014-07-02 14:58:01,318] [Preprocessor.java:241] [main] Processing chromosome C10157 Processing chromosome C10157 INFO [2014-07-02 14:58:01,708] [Preprocessor.java:241] [main] Processing chromosome C10163 Processing chromosome C10163 INFO [2014-07-02 14:58:01,730] [Preprocessor.java:241] [main] Processing chromosome C10171 Processing chromosome C10171 INFO [2014-07-02 14:58:01,845] [Preprocessor.java:241] [main] Processing chromosome C10175 Processing chromosome C10175 INFO [2014-07-02 14:58:01,980] [Preprocessor.java:241] [main] Processing chromosome C10183 Processing chromosome C10183 INFO [2014-07-02 14:58:02,049] [Preprocessor.java:241] [main] Processing chromosome C10189 Processing chromosome C10189 INFO [2014-07-02 14:58:02,113] [Preprocessor.java:241] [main] Processing chromosome C10235 Processing chromosome C10235 INFO [2014-07-02 14:58:02,135] [Preprocessor.java:241] [main] Processing chromosome C10261 Processing chromosome C10261 INFO [2014-07-02 14:58:02,228] [Preprocessor.java:241] [main] Processing chromosome C10263 Processing chromosome C10263 INFO [2014-07-02 14:58:02,318] [Preprocessor.java:241] [main] Processing chromosome C10271 Processing chromosome C10271 INFO [2014-07-02 14:58:02,374] [Preprocessor.java:241] [main] Processing chromosome C10277 Processing chromosome C10277 INFO [2014-07-02 14:58:02,420] [Preprocessor.java:241] [main] Processing chromosome C10345 Processing chromosome C10345 INFO [2014-07-02 14:58:02,464] [Preprocessor.java:241] [main] Processing chromosome C10405 Processing chromosome C10405 INFO [2014-07-02 14:58:02,512] [Preprocessor.java:241] [main] Processing chromosome C10409 Processing chromosome C10409 INFO [2014-07-02 14:58:02,567] [Preprocessor.java:241] [main] Processing chromosome C10411 Processing chromosome C10411 INFO [2014-07-02 14:58:02,625] [Preprocessor.java:241] [main] Processing chromosome C10425 Processing chromosome C10425 INFO [2014-07-02 14:58:02,666] [Preprocessor.java:241] [main] Processing chromosome C10431 Processing chromosome C10431 INFO [2014-07-02 14:58:02,711] [Preprocessor.java:241] [main] Processing chromosome C10437 Processing chromosome C10437 INFO [2014-07-02 14:58:02,764] [Preprocessor.java:241] [main] Processing chromosome C1047 Processing chromosome C1047 INFO [2014-07-02 14:58:02,825] [Preprocessor.java:241] [main] Processing chromosome C10477 Processing chromosome C10477 INFO [2014-07-02 14:58:02,915] [Preprocessor.java:241] [main] Processing chromosome C10487 Processing chromosome C10487 INFO [2014-07-02 14:58:03,012] [Preprocessor.java:241] [main] Processing chromosome C10491 Processing chromosome C10491 INFO [2014-07-02 14:58:03,058] [Preprocessor.java:241] [main] Processing chromosome C10495 Processing chromosome C10495 INFO [2014-07-02 14:58:03,123] [Preprocessor.java:241] [main] Processing chromosome C10509 Processing chromosome C10509 INFO [2014-07-02 14:58:03,182] [Preprocessor.java:241] [main] Processing chromosome C10535 Processing chromosome C10535 INFO [2014-07-02 14:58:03,249] [Preprocessor.java:241] [main] Processing chromosome C10549 Processing chromosome C10549 INFO [2014-07-02 14:58:03,289] [Preprocessor.java:241] [main] Processing chromosome C10575 Processing chromosome C10575 INFO [2014-07-02 14:58:03,349] [Preprocessor.java:241] [main] Processing chromosome C10579 Processing chromosome C10579 INFO [2014-07-02 14:58:03,387] [Preprocessor.java:241] [main] Processing chromosome C10585 Processing chromosome C10585 INFO [2014-07-02 14:58:03,407] [Preprocessor.java:241] [main] Processing chromosome C10591 Processing chromosome C10591 INFO [2014-07-02 14:58:03,443] [Preprocessor.java:241] [main] Processing chromosome C10599 Processing chromosome C10599 INFO [2014-07-02 14:58:03,498] [Preprocessor.java:241] [main] Processing chromosome C10605 Processing chromosome C10605 INFO [2014-07-02 14:58:03,544] [Preprocessor.java:241] [main] Processing chromosome C10607 Processing chromosome C10607 INFO [2014-07-02 14:58:03,585] [Preprocessor.java:241] [main] Processing chromosome C10609 Processing chromosome C10609 INFO [2014-07-02 14:58:03,654] [Preprocessor.java:241] [main] Processing chromosome C10613 Processing chromosome C10613 INFO [2014-07-02 14:58:03,675] [Preprocessor.java:241] [main] Processing chromosome C10619 Processing chromosome C10619 INFO [2014-07-02 14:58:03,775] [Preprocessor.java:241] [main] Processing chromosome C10621 Processing chromosome C10621 INFO [2014-07-02 14:58:03,884] [Preprocessor.java:241] [main] Processing chromosome C10655 Processing chromosome C10655 INFO [2014-07-02 14:58:03,941] [Preprocessor.java:241] [main] Processing chromosome C10659 Processing chromosome C10659 INFO [2014-07-02 14:58:03,967] [Preprocessor.java:241] [main] Processing chromosome C10661 Processing chromosome C10661 INFO [2014-07-02 14:58:04,039] [Preprocessor.java:241] [main] Processing chromosome C10677 Processing chromosome C10677 INFO [2014-07-02 14:58:04,105] [Preprocessor.java:241] [main] Processing chromosome C10693 Processing chromosome C10693 INFO [2014-07-02 14:58:04,160] [Preprocessor.java:241] [main] Processing chromosome C10699 Processing chromosome C10699 INFO [2014-07-02 14:58:04,216] [Preprocessor.java:241] [main] Processing chromosome C10733 Processing chromosome C10733 INFO [2014-07-02 14:58:04,239] [Preprocessor.java:241] [main] Processing chromosome C10741 Processing chromosome C10741 INFO [2014-07-02 14:58:04,343] [Preprocessor.java:241] [main] Processing chromosome C10743 Processing chromosome C10743 INFO [2014-07-02 14:58:04,411] [Preprocessor.java:241] [main] Processing chromosome C10765 Processing chromosome C10765 INFO [2014-07-02 14:58:04,470] [Preprocessor.java:241] [main] Processing chromosome C10775 Processing chromosome C10775 INFO [2014-07-02 14:58:04,505] [Preprocessor.java:241] [main] Processing chromosome C10803 Processing chromosome C10803 INFO [2014-07-02 14:58:04,564] [Preprocessor.java:241] [main] Processing chromosome C10811 Processing chromosome C10811 INFO [2014-07-02 14:58:04,623] [Preprocessor.java:241] [main] Processing chromosome C10819 Processing chromosome C10819 INFO [2014-07-02 14:58:04,667] [Preprocessor.java:241] [main] Processing chromosome C10821 Processing chromosome C10821 INFO [2014-07-02 14:58:04,744] [Preprocessor.java:241] [main] Processing chromosome C10829 Processing chromosome C10829 INFO [2014-07-02 14:58:04,868] [Preprocessor.java:241] [main] Processing chromosome C10833 Processing chromosome C10833 INFO [2014-07-02 14:58:05,085] [Preprocessor.java:241] [main] Processing chromosome C10837 Processing chromosome C10837 INFO [2014-07-02 14:58:06,146] [Preprocessor.java:241] [main] Processing chromosome C10871 Processing chromosome C10871 INFO [2014-07-02 14:58:06,203] [Preprocessor.java:241] [main] Processing chromosome C10879 Processing chromosome C10879 INFO [2014-07-02 14:58:06,229] [Preprocessor.java:241] [main] Processing chromosome C10891 Processing chromosome C10891 INFO [2014-07-02 14:58:06,266] [Preprocessor.java:241] [main] Processing chromosome C10901 Processing chromosome C10901 INFO [2014-07-02 14:58:06,360] [Preprocessor.java:241] [main] Processing chromosome C10905 Processing chromosome C10905 INFO [2014-07-02 14:58:06,405] [Preprocessor.java:241] [main] Processing chromosome C10941 Processing chromosome C10941 INFO [2014-07-02 14:58:06,459] [Preprocessor.java:241] [main] Processing chromosome C10947 Processing chromosome C10947 INFO [2014-07-02 14:58:06,519] [Preprocessor.java:241] [main] Processing chromosome C1095 Processing chromosome C1095 INFO [2014-07-02 14:58:06,556] [Preprocessor.java:241] [main] Processing chromosome C10955 Processing chromosome C10955 INFO [2014-07-02 14:58:06,635] [Preprocessor.java:241] [main] Processing chromosome C10963 Processing chromosome C10963 INFO [2014-07-02 14:58:06,681] [Preprocessor.java:241] [main] Processing chromosome C10967 Processing chromosome C10967 INFO [2014-07-02 14:58:06,733] [Preprocessor.java:241] [main] Processing chromosome C10969 Processing chromosome C10969 INFO [2014-07-02 14:58:06,776] [Preprocessor.java:241] [main] Processing chromosome C1097 Processing chromosome C1097 INFO [2014-07-02 14:58:06,811] [Preprocessor.java:241] [main] Processing chromosome C10999 Processing chromosome C10999 INFO [2014-07-02 14:58:06,894] [Preprocessor.java:241] [main] Processing chromosome C11001 Processing chromosome C11001 INFO [2014-07-02 14:58:06,937] [Preprocessor.java:241] [main] Processing chromosome C11027 Processing chromosome C11027 INFO [2014-07-02 14:58:06,997] [Preprocessor.java:241] [main] Processing chromosome C11031 Processing chromosome C11031 INFO [2014-07-02 14:58:07,031] [Preprocessor.java:241] [main] Processing chromosome C11057 Processing chromosome C11057 INFO [2014-07-02 14:58:07,079] [Preprocessor.java:241] [main] Processing chromosome C11061 Processing chromosome C11061 INFO [2014-07-02 14:58:07,175] [Preprocessor.java:241] [main] Processing chromosome C11065 Processing chromosome C11065 INFO [2014-07-02 14:58:07,217] [Preprocessor.java:241] [main] Processing chromosome C11083 Processing chromosome C11083 INFO [2014-07-02 14:58:07,265] [Preprocessor.java:241] [main] Processing chromosome C11085 Processing chromosome C11085 INFO [2014-07-02 14:58:07,334] [Preprocessor.java:241] [main] Processing chromosome C11123 Processing chromosome C11123 INFO [2014-07-02 14:58:07,393] [Preprocessor.java:241] [main] Processing chromosome C11125 Processing chromosome C11125 INFO [2014-07-02 14:58:07,432] [Preprocessor.java:241] [main] Processing chromosome C1113 Processing chromosome C1113 INFO [2014-07-02 14:58:07,466] [Preprocessor.java:241] [main] Processing chromosome C11141 Processing chromosome C11141 INFO [2014-07-02 14:58:07,512] [Preprocessor.java:241] [main] Processing chromosome C11143 Processing chromosome C11143 INFO [2014-07-02 14:58:07,533] [Preprocessor.java:241] [main] Processing chromosome C11191 Processing chromosome C11191 INFO [2014-07-02 14:58:07,602] [Preprocessor.java:241] [main] Processing chromosome C11193 Processing chromosome C11193 INFO [2014-07-02 14:58:07,641] [Preprocessor.java:241] [main] Processing chromosome C11207 Processing chromosome C11207 INFO [2014-07-02 14:58:07,703] [Preprocessor.java:241] [main] Processing chromosome C11211 Processing chromosome C11211 INFO [2014-07-02 14:58:07,738] [Preprocessor.java:241] [main] Processing chromosome C11215 Processing chromosome C11215 INFO [2014-07-02 14:58:07,797] [Preprocessor.java:241] [main] Processing chromosome C11227 Processing chromosome C11227 INFO [2014-07-02 14:58:07,836] [Preprocessor.java:241] [main] Processing chromosome C11246 Processing chromosome C11246 INFO [2014-07-02 14:58:07,877] [Preprocessor.java:241] [main] Processing chromosome C11270 Processing chromosome C11270 INFO [2014-07-02 14:58:07,937] [Preprocessor.java:241] [main] Processing chromosome C11282 Processing chromosome C11282 INFO [2014-07-02 14:58:07,974] [Preprocessor.java:241] [main] Processing chromosome C11288 Processing chromosome C11288 INFO [2014-07-02 14:58:08,021] [Preprocessor.java:241] [main] Processing chromosome C11292 Processing chromosome C11292 INFO [2014-07-02 14:58:08,067] [Preprocessor.java:241] [main] Processing chromosome C11304 Processing chromosome C11304 INFO [2014-07-02 14:58:08,129] [Preprocessor.java:241] [main] Processing chromosome C11350 Processing chromosome C11350 INFO [2014-07-02 14:58:08,169] [Preprocessor.java:241] [main] Processing chromosome C11352 Processing chromosome C11352 INFO [2014-07-02 14:58:08,267] [Preprocessor.java:241] [main] Processing chromosome C11358 Processing chromosome C11358 INFO [2014-07-02 14:58:08,323] [Preprocessor.java:241] [main] Processing chromosome C11364 Processing chromosome C11364 INFO [2014-07-02 14:58:08,363] [Preprocessor.java:241] [main] Processing chromosome C11366 Processing chromosome C11366 INFO [2014-07-02 14:58:08,462] [Preprocessor.java:241] [main] Processing chromosome C11372 Processing chromosome C11372 INFO [2014-07-02 14:58:08,508] [Preprocessor.java:241] [main] Processing chromosome C11402 Processing chromosome C11402 INFO [2014-07-02 14:58:08,563] [Preprocessor.java:241] [main] Processing chromosome C11408 Processing chromosome C11408 INFO [2014-07-02 14:58:08,584] [Preprocessor.java:241] [main] Processing chromosome C11410 Processing chromosome C11410 INFO [2014-07-02 14:58:08,631] [Preprocessor.java:241] [main] Processing chromosome C11416 Processing chromosome C11416 INFO [2014-07-02 14:58:08,684] [Preprocessor.java:241] [main] Processing chromosome C11422 Processing chromosome C11422 INFO [2014-07-02 14:58:08,739] [Preprocessor.java:241] [main] Processing chromosome C11428 Processing chromosome C11428 INFO [2014-07-02 14:58:08,758] [Preprocessor.java:241] [main] Processing chromosome C11468 Processing chromosome C11468 INFO [2014-07-02 14:58:08,843] [Preprocessor.java:241] [main] Processing chromosome C11470 Processing chromosome C11470 INFO [2014-07-02 14:58:08,898] [Preprocessor.java:241] [main] Processing chromosome C11476 Processing chromosome C11476 INFO [2014-07-02 14:58:08,957] [Preprocessor.java:241] [main] Processing chromosome C11478 Processing chromosome C11478 INFO [2014-07-02 14:58:09,017] [Preprocessor.java:241] [main] Processing chromosome C11480 Processing chromosome C11480 INFO [2014-07-02 14:58:09,038] [Preprocessor.java:241] [main] Processing chromosome C11488 Processing chromosome C11488 INFO [2014-07-02 14:58:09,071] [Preprocessor.java:241] [main] Processing chromosome C11490 Processing chromosome C11490 INFO [2014-07-02 14:58:09,103] [Preprocessor.java:241] [main] Processing chromosome C11496 Processing chromosome C11496 INFO [2014-07-02 14:58:09,174] [Preprocessor.java:241] [main] Processing chromosome C11500 Processing chromosome C11500 INFO [2014-07-02 14:58:09,200] [Preprocessor.java:241] [main] Processing chromosome C1153 Processing chromosome C1153 INFO [2014-07-02 14:58:09,303] [Preprocessor.java:241] [main] Processing chromosome C11532 Processing chromosome C11532 INFO [2014-07-02 14:58:09,326] [Preprocessor.java:241] [main] Processing chromosome C11542 Processing chromosome C11542 INFO [2014-07-02 14:58:09,362] [Preprocessor.java:241] [main] Processing chromosome C1155 Processing chromosome C1155 INFO [2014-07-02 14:58:09,460] [Preprocessor.java:241] [main] Processing chromosome C11552 Processing chromosome C11552 INFO [2014-07-02 14:58:09,494] [Preprocessor.java:241] [main] Processing chromosome C11556 Processing chromosome C11556 INFO [2014-07-02 14:58:09,531] [Preprocessor.java:241] [main] Processing chromosome C11558 Processing chromosome C11558 INFO [2014-07-02 14:58:09,567] [Preprocessor.java:241] [main] Processing chromosome C11564 Processing chromosome C11564 INFO [2014-07-02 14:58:09,587] [Preprocessor.java:241] [main] Processing chromosome C11568 Processing chromosome C11568 INFO [2014-07-02 14:58:09,641] [Preprocessor.java:241] [main] Processing chromosome C11572 Processing chromosome C11572 INFO [2014-07-02 14:58:09,681] [Preprocessor.java:241] [main] Processing chromosome C11574 Processing chromosome C11574 INFO [2014-07-02 14:58:09,739] [Preprocessor.java:241] [main] Processing chromosome C11580 Processing chromosome C11580 INFO [2014-07-02 14:58:09,758] [Preprocessor.java:241] [main] Processing chromosome C1161 Processing chromosome C1161 INFO [2014-07-02 14:58:09,833] [Preprocessor.java:241] [main] Processing chromosome C11614 Processing chromosome C11614 INFO [2014-07-02 14:58:09,880] [Preprocessor.java:241] [main] Processing chromosome C11636 Processing chromosome C11636 INFO [2014-07-02 14:58:09,961] [Preprocessor.java:241] [main] Processing chromosome C11638 Processing chromosome C11638 INFO [2014-07-02 14:58:10,009] [Preprocessor.java:241] [main] Processing chromosome C11646 Processing chromosome C11646 INFO [2014-07-02 14:58:10,085] [Preprocessor.java:241] [main] Processing chromosome C1169 Processing chromosome C1169 INFO [2014-07-02 14:58:10,120] [Preprocessor.java:241] [main] Processing chromosome C11690 Processing chromosome C11690 INFO [2014-07-02 14:58:10,191] [Preprocessor.java:241] [main] Processing chromosome C11702 Processing chromosome C11702 INFO [2014-07-02 14:58:10,225] [Preprocessor.java:241] [main] Processing chromosome C11706 Processing chromosome C11706 INFO [2014-07-02 14:58:10,282] [Preprocessor.java:241] [main] Processing chromosome C11708 Processing chromosome C11708 INFO [2014-07-02 14:58:10,341] [Preprocessor.java:241] [main] Processing chromosome C11726 Processing chromosome C11726 INFO [2014-07-02 14:58:10,363] [Preprocessor.java:241] [main] Processing chromosome C11734 Processing chromosome C11734 INFO [2014-07-02 14:58:10,423] [Preprocessor.java:241] [main] Processing chromosome C1175 Processing chromosome C1175 INFO [2014-07-02 14:58:10,535] [Preprocessor.java:241] [main] Processing chromosome C11756 Processing chromosome C11756 INFO [2014-07-02 14:58:10,599] [Preprocessor.java:241] [main] Processing chromosome C11758 Processing chromosome C11758 INFO [2014-07-02 14:58:10,661] [Preprocessor.java:241] [main] Processing chromosome C11768 Processing chromosome C11768 INFO [2014-07-02 14:58:10,720] [Preprocessor.java:241] [main] Processing chromosome C1177 Processing chromosome C1177 INFO [2014-07-02 14:58:10,781] [Preprocessor.java:241] [main] Processing chromosome C11776 Processing chromosome C11776 INFO [2014-07-02 14:58:10,814] [Preprocessor.java:241] [main] Processing chromosome C11804 Processing chromosome C11804 INFO [2014-07-02 14:58:10,855] [Preprocessor.java:241] [main] Processing chromosome C11806 Processing chromosome C11806 INFO [2014-07-02 14:58:10,877] [Preprocessor.java:241] [main] Processing chromosome C11812 Processing chromosome C11812 INFO [2014-07-02 14:58:10,946] [Preprocessor.java:241] [main] Processing chromosome C11814 Processing chromosome C11814 INFO [2014-07-02 14:58:10,996] [Preprocessor.java:241] [main] Processing chromosome C11820 Processing chromosome C11820 INFO [2014-07-02 14:58:11,015] [Preprocessor.java:241] [main] Processing chromosome C11822 Processing chromosome C11822 INFO [2014-07-02 14:58:11,064] [Preprocessor.java:241] [main] Processing chromosome C11858 Processing chromosome C11858 INFO [2014-07-02 14:58:11,119] [Preprocessor.java:241] [main] Processing chromosome C11862 Processing chromosome C11862 INFO [2014-07-02 14:58:11,194] [Preprocessor.java:241] [main] Processing chromosome C11864 Processing chromosome C11864 INFO [2014-07-02 14:58:11,245] [Preprocessor.java:241] [main] Processing chromosome C11866 Processing chromosome C11866 INFO [2014-07-02 14:58:11,265] [Preprocessor.java:241] [main] Processing chromosome C11868 Processing chromosome C11868 INFO [2014-07-02 14:58:11,333] [Preprocessor.java:241] [main] Processing chromosome C11876 Processing chromosome C11876 INFO [2014-07-02 14:58:11,401] [Preprocessor.java:241] [main] Processing chromosome C11900 Processing chromosome C11900 INFO [2014-07-02 14:58:11,422] [Preprocessor.java:241] [main] Processing chromosome C11906 Processing chromosome C11906 INFO [2014-07-02 14:58:11,483] [Preprocessor.java:241] [main] Processing chromosome C11950 Processing chromosome C11950 INFO [2014-07-02 14:58:11,551] [Preprocessor.java:241] [main] Processing chromosome C11962 Processing chromosome C11962 INFO [2014-07-02 14:58:11,601] [Preprocessor.java:241] [main] Processing chromosome C11970 Processing chromosome C11970 INFO [2014-07-02 14:58:11,659] [Preprocessor.java:241] [main] Processing chromosome C12004 Processing chromosome C12004 INFO [2014-07-02 14:58:11,716] [Preprocessor.java:241] [main] Processing chromosome C12006 Processing chromosome C12006 INFO [2014-07-02 14:58:11,761] [Preprocessor.java:241] [main] Processing chromosome C12008 Processing chromosome C12008 INFO [2014-07-02 14:58:11,823] [Preprocessor.java:241] [main] Processing chromosome C12034 Processing chromosome C12034 INFO [2014-07-02 14:58:11,874] [Preprocessor.java:241] [main] Processing chromosome C12042 Processing chromosome C12042 INFO [2014-07-02 14:58:11,903] [Preprocessor.java:241] [main] Processing chromosome C12046 Processing chromosome C12046 INFO [2014-07-02 14:58:11,935] [Preprocessor.java:241] [main] Processing chromosome C1205 Processing chromosome C1205 INFO [2014-07-02 14:58:12,007] [Preprocessor.java:241] [main] Processing chromosome C12060 Processing chromosome C12060 INFO [2014-07-02 14:58:12,026] [Preprocessor.java:241] [main] Processing chromosome C12062 Processing chromosome C12062 INFO [2014-07-02 14:58:12,103] [Preprocessor.java:241] [main] Processing chromosome C12066 Processing chromosome C12066 INFO [2014-07-02 14:58:12,151] [Preprocessor.java:241] [main] Processing chromosome C1207 Processing chromosome C1207 INFO [2014-07-02 14:58:12,237] [Preprocessor.java:241] [main] Processing chromosome C12106 Processing chromosome C12106 INFO [2014-07-02 14:58:12,256] [Preprocessor.java:241] [main] Processing chromosome C12108 Processing chromosome C12108 INFO [2014-07-02 14:58:12,331] [Preprocessor.java:241] [main] Processing chromosome C12110 Processing chromosome C12110 INFO [2014-07-02 14:58:12,373] [Preprocessor.java:241] [main] Processing chromosome C12128 Processing chromosome C12128 INFO [2014-07-02 14:58:12,410] [Preprocessor.java:241] [main] Processing chromosome C12134 Processing chromosome C12134 INFO [2014-07-02 14:58:12,460] [Preprocessor.java:241] [main] Processing chromosome C12136 Processing chromosome C12136 INFO [2014-07-02 14:58:12,509] [Preprocessor.java:241] [main] Processing chromosome C12140 Processing chromosome C12140 INFO [2014-07-02 14:58:12,528] [Preprocessor.java:241] [main] Processing chromosome C12146 Processing chromosome C12146 INFO [2014-07-02 14:58:12,578] [Preprocessor.java:241] [main] Processing chromosome C12148 Processing chromosome C12148 INFO [2014-07-02 14:58:12,614] [Preprocessor.java:241] [main] Processing chromosome C12168 Processing chromosome C12168 INFO [2014-07-02 14:58:12,636] [Preprocessor.java:241] [main] Processing chromosome C1217 Processing chromosome C1217 INFO [2014-07-02 14:58:12,727] [Preprocessor.java:241] [main] Processing chromosome C12202 Processing chromosome C12202 INFO [2014-07-02 14:58:12,786] [Preprocessor.java:241] [main] Processing chromosome C12206 Processing chromosome C12206 INFO [2014-07-02 14:58:12,844] [Preprocessor.java:241] [main] Processing chromosome C12210 Processing chromosome C12210 INFO [2014-07-02 14:58:12,877] [Preprocessor.java:241] [main] Processing chromosome C12216 Processing chromosome C12216 INFO [2014-07-02 14:58:12,940] [Preprocessor.java:241] [main] Processing chromosome C12220 Processing chromosome C12220 INFO [2014-07-02 14:58:12,985] [Preprocessor.java:241] [main] Processing chromosome C12262 Processing chromosome C12262 INFO [2014-07-02 14:58:13,055] [Preprocessor.java:241] [main] Processing chromosome C12316 Processing chromosome C12316 INFO [2014-07-02 14:58:13,107] [Preprocessor.java:241] [main] Processing chromosome C12320 Processing chromosome C12320 INFO [2014-07-02 14:58:13,164] [Preprocessor.java:241] [main] Processing chromosome C12328 Processing chromosome C12328 INFO [2014-07-02 14:58:13,209] [Preprocessor.java:241] [main] Processing chromosome C12366 Processing chromosome C12366 INFO [2014-07-02 14:58:13,346] [Preprocessor.java:241] [main] Processing chromosome C12368 Processing chromosome C12368 INFO [2014-07-02 14:58:13,388] [Preprocessor.java:241] [main] Processing chromosome C12382 Processing chromosome C12382 INFO [2014-07-02 14:58:13,433] [Preprocessor.java:241] [main] Processing chromosome C12386 Processing chromosome C12386 INFO [2014-07-02 14:58:13,468] [Preprocessor.java:241] [main] Processing chromosome C12388 Processing chromosome C12388 INFO [2014-07-02 14:58:13,523] [Preprocessor.java:241] [main] Processing chromosome C12390 Processing chromosome C12390 INFO [2014-07-02 14:58:13,566] [Preprocessor.java:241] [main] Processing chromosome C12392 Processing chromosome C12392 INFO [2014-07-02 14:58:13,617] [Preprocessor.java:241] [main] Processing chromosome C12412 Processing chromosome C12412 INFO [2014-07-02 14:58:13,671] [Preprocessor.java:241] [main] Processing chromosome C12426 Processing chromosome C12426 INFO [2014-07-02 14:58:13,706] [Preprocessor.java:241] [main] Processing chromosome C12428 Processing chromosome C12428 INFO [2014-07-02 14:58:13,763] [Preprocessor.java:241] [main] Processing chromosome C12438 Processing chromosome C12438 INFO [2014-07-02 14:58:13,855] [Preprocessor.java:241] [main] Processing chromosome C12478 Processing chromosome C12478 INFO [2014-07-02 14:58:13,894] [Preprocessor.java:241] [main] Processing chromosome C12480 Processing chromosome C12480 INFO [2014-07-02 14:58:13,914] [Preprocessor.java:241] [main] Processing chromosome C12484 Processing chromosome C12484 INFO [2014-07-02 14:58:13,973] [Preprocessor.java:241] [main] Processing chromosome C12492 Processing chromosome C12492 INFO [2014-07-02 14:58:14,019] [Preprocessor.java:241] [main] Processing chromosome C12500 Processing chromosome C12500 INFO [2014-07-02 14:58:14,065] [Preprocessor.java:241] [main] Processing chromosome C12504 Processing chromosome C12504 INFO [2014-07-02 14:58:14,136] [Preprocessor.java:241] [main] Processing chromosome C12506 Processing chromosome C12506 INFO [2014-07-02 14:58:14,181] [Preprocessor.java:241] [main] Processing chromosome C12508 Processing chromosome C12508 INFO [2014-07-02 14:58:15,772] [Preprocessor.java:241] [main] Processing chromosome C12538 Processing chromosome C12538 INFO [2014-07-02 14:58:15,824] [Preprocessor.java:241] [main] Processing chromosome C12540 Processing chromosome C12540 INFO [2014-07-02 14:58:15,920] [Preprocessor.java:241] [main] Processing chromosome C12548 Processing chromosome C12548 INFO [2014-07-02 14:58:15,984] [Preprocessor.java:241] [main] Processing chromosome C12552 Processing chromosome C12552 INFO [2014-07-02 14:58:16,027] [Preprocessor.java:241] [main] Processing chromosome C12558 Processing chromosome C12558 INFO [2014-07-02 14:58:16,077] [Preprocessor.java:241] [main] Processing chromosome C12584 Processing chromosome C12584 INFO [2014-07-02 14:58:16,127] [Preprocessor.java:241] [main] Processing chromosome C12590 Processing chromosome C12590 INFO [2014-07-02 14:58:16,191] [Preprocessor.java:241] [main] Processing chromosome C12592 Processing chromosome C12592 INFO [2014-07-02 14:58:16,252] [Preprocessor.java:241] [main] Processing chromosome C12618 Processing chromosome C12618 INFO [2014-07-02 14:58:16,307] [Preprocessor.java:241] [main] Processing chromosome C12622 Processing chromosome C12622 INFO [2014-07-02 14:58:16,327] [Preprocessor.java:241] [main] Processing chromosome C12630 Processing chromosome C12630 INFO [2014-07-02 14:58:16,356] [Preprocessor.java:241] [main] Processing chromosome C12658 Processing chromosome C12658 INFO [2014-07-02 14:58:16,455] [Preprocessor.java:241] [main] Processing chromosome C12660 Processing chromosome C12660 INFO [2014-07-02 14:58:16,494] [Preprocessor.java:241] [main] Processing chromosome C12662 Processing chromosome C12662 INFO [2014-07-02 14:58:16,547] [Preprocessor.java:241] [main] Processing chromosome C12670 Processing chromosome C12670 INFO [2014-07-02 14:58:16,565] [Preprocessor.java:241] [main] Processing chromosome C12672 Processing chromosome C12672 INFO [2014-07-02 14:58:16,605] [Preprocessor.java:241] [main] Processing chromosome C12678 Processing chromosome C12678 INFO [2014-07-02 14:58:16,622] [Preprocessor.java:241] [main] Processing chromosome C12684 Processing chromosome C12684 INFO [2014-07-02 14:58:16,651] [Preprocessor.java:241] [main] Processing chromosome C12708 Processing chromosome C12708 INFO [2014-07-02 14:58:16,680] [Preprocessor.java:241] [main] Processing chromosome C12724 Processing chromosome C12724 INFO [2014-07-02 14:58:16,734] [Preprocessor.java:241] [main] Processing chromosome C12726 Processing chromosome C12726 INFO [2014-07-02 14:58:16,752] [Preprocessor.java:241] [main] Processing chromosome C12742 Processing chromosome C12742 INFO [2014-07-02 14:58:16,781] [Preprocessor.java:241] [main] Processing chromosome C12758 Processing chromosome C12758 INFO [2014-07-02 14:58:16,841] [Preprocessor.java:241] [main] Processing chromosome C12760 Processing chromosome C12760 INFO [2014-07-02 14:58:16,937] [Preprocessor.java:241] [main] Processing chromosome C12764 Processing chromosome C12764 INFO [2014-07-02 14:58:16,983] [Preprocessor.java:241] [main] Processing chromosome C12786 Processing chromosome C12786 INFO [2014-07-02 14:58:17,014] [Preprocessor.java:241] [main] Processing chromosome C12798 Processing chromosome C12798 INFO [2014-07-02 14:58:17,070] [Preprocessor.java:241] [main] Processing chromosome C12806 Processing chromosome C12806 INFO [2014-07-02 14:58:17,093] [Preprocessor.java:241] [main] Processing chromosome C12830 Processing chromosome C12830 INFO [2014-07-02 14:58:17,156] [Preprocessor.java:241] [main] Processing chromosome C12834 Processing chromosome C12834 INFO [2014-07-02 14:58:17,195] [Preprocessor.java:241] [main] Processing chromosome C12838 Processing chromosome C12838 INFO [2014-07-02 14:58:17,245] [Preprocessor.java:241] [main] Processing chromosome C12848 Processing chromosome C12848 INFO [2014-07-02 14:58:17,290] [Preprocessor.java:241] [main] Processing chromosome C12882 Processing chromosome C12882 INFO [2014-07-02 14:58:17,388] [Preprocessor.java:241] [main] Processing chromosome C12916 Processing chromosome C12916 INFO [2014-07-02 14:58:17,445] [Preprocessor.java:241] [main] Processing chromosome C12928 Processing chromosome C12928 INFO [2014-07-02 14:58:17,502] [Preprocessor.java:241] [main] Processing chromosome C12930 Processing chromosome C12930 INFO [2014-07-02 14:58:17,558] [Preprocessor.java:241] [main] Processing chromosome C12932 Processing chromosome C12932 INFO [2014-07-02 14:58:17,604] [Preprocessor.java:241] [main] Processing chromosome C12934 Processing chromosome C12934 INFO [2014-07-02 14:58:17,662] [Preprocessor.java:241] [main] Processing chromosome C12938 Processing chromosome C12938 INFO [2014-07-02 14:58:17,724] [Preprocessor.java:241] [main] Processing chromosome C12942 Processing chromosome C12942 INFO [2014-07-02 14:58:17,770] [Preprocessor.java:241] [main] Processing chromosome C12970 Processing chromosome C12970 INFO [2014-07-02 14:58:17,865] [Preprocessor.java:241] [main] Processing chromosome C12972 Processing chromosome C12972 INFO [2014-07-02 14:58:17,919] [Preprocessor.java:241] [main] Processing chromosome C12974 Processing chromosome C12974 INFO [2014-07-02 14:58:17,983] [Preprocessor.java:241] [main] Processing chromosome C12984 Processing chromosome C12984 INFO [2014-07-02 14:58:18,002] [Preprocessor.java:241] [main] Processing chromosome C13020 Processing chromosome C13020 INFO [2014-07-02 14:58:18,064] [Preprocessor.java:241] [main] Processing chromosome C13026 Processing chromosome C13026 INFO [2014-07-02 14:58:18,120] [Preprocessor.java:241] [main] Processing chromosome C13028 Processing chromosome C13028 INFO [2014-07-02 14:58:18,171] [Preprocessor.java:241] [main] Processing chromosome C13048 Processing chromosome C13048 INFO [2014-07-02 14:58:18,239] [Preprocessor.java:241] [main] Processing chromosome C13052 Processing chromosome C13052 INFO [2014-07-02 14:58:18,331] [Preprocessor.java:241] [main] Processing chromosome C13098 Processing chromosome C13098 INFO [2014-07-02 14:58:18,390] [Preprocessor.java:241] [main] Processing chromosome C13102 Processing chromosome C13102 INFO [2014-07-02 14:58:18,435] [Preprocessor.java:241] [main] Processing chromosome C13132 Processing chromosome C13132 INFO [2014-07-02 14:58:18,454] [Preprocessor.java:241] [main] Processing chromosome C13134 Processing chromosome C13134 INFO [2014-07-02 14:58:18,494] [Preprocessor.java:241] [main] Processing chromosome C13136 Processing chromosome C13136 INFO [2014-07-02 14:58:18,551] [Preprocessor.java:241] [main] Processing chromosome C13140 Processing chromosome C13140 INFO [2014-07-02 14:58:18,611] [Preprocessor.java:241] [main] Processing chromosome C13156 Processing chromosome C13156 INFO [2014-07-02 14:58:18,712] [Preprocessor.java:241] [main] Processing chromosome C13178 Processing chromosome C13178 INFO [2014-07-02 14:58:18,781] [Preprocessor.java:241] [main] Processing chromosome C13180 Processing chromosome C13180 INFO [2014-07-02 14:58:18,862] [Preprocessor.java:241] [main] Processing chromosome C13182 Processing chromosome C13182 INFO [2014-07-02 14:58:18,918] [Preprocessor.java:241] [main] Processing chromosome C13186 Processing chromosome C13186 INFO [2014-07-02 14:58:18,972] [Preprocessor.java:241] [main] Processing chromosome C1319 Processing chromosome C1319 INFO [2014-07-02 14:58:19,028] [Preprocessor.java:241] [main] Processing chromosome C13208 Processing chromosome C13208 INFO [2014-07-02 14:58:19,047] [Preprocessor.java:241] [main] Processing chromosome C13260 Processing chromosome C13260 INFO [2014-07-02 14:58:19,093] [Preprocessor.java:241] [main] Processing chromosome C13266 Processing chromosome C13266 INFO [2014-07-02 14:58:19,131] [Preprocessor.java:241] [main] Processing chromosome C13268 Processing chromosome C13268 INFO [2014-07-02 14:58:19,194] [Preprocessor.java:241] [main] Processing chromosome C13320 Processing chromosome C13320 INFO [2014-07-02 14:58:19,260] [Preprocessor.java:241] [main] Processing chromosome C13324 Processing chromosome C13324 INFO [2014-07-02 14:58:19,314] [Preprocessor.java:241] [main] Processing chromosome C13326 Processing chromosome C13326 INFO [2014-07-02 14:58:19,342] [Preprocessor.java:241] [main] Processing chromosome C13328 Processing chromosome C13328 INFO [2014-07-02 14:58:19,405] [Preprocessor.java:241] [main] Processing chromosome C13370 Processing chromosome C13370 INFO [2014-07-02 14:58:19,423] [Preprocessor.java:241] [main] Processing chromosome C13396 Processing chromosome C13396 INFO [2014-07-02 14:58:19,478] [Preprocessor.java:241] [main] Processing chromosome C13406 Processing chromosome C13406 INFO [2014-07-02 14:58:19,539] [Preprocessor.java:241] [main] Processing chromosome C13440 Processing chromosome C13440 INFO [2014-07-02 14:58:19,603] [Preprocessor.java:241] [main] Processing chromosome C13460 Processing chromosome C13460 INFO [2014-07-02 14:58:19,660] [Preprocessor.java:241] [main] Processing chromosome C13462 Processing chromosome C13462 INFO [2014-07-02 14:58:19,706] [Preprocessor.java:241] [main] Processing chromosome C13464 Processing chromosome C13464 INFO [2014-07-02 14:58:19,815] [Preprocessor.java:241] [main] Processing chromosome C13466 Processing chromosome C13466 INFO [2014-07-02 14:58:19,835] [Preprocessor.java:241] [main] Processing chromosome C13492 Processing chromosome C13492 INFO [2014-07-02 14:58:19,866] [Preprocessor.java:241] [main] Processing chromosome C13508 Processing chromosome C13508 INFO [2014-07-02 14:58:19,945] [Preprocessor.java:241] [main] Processing chromosome C13516 Processing chromosome C13516 INFO [2014-07-02 14:58:19,987] [Preprocessor.java:241] [main] Processing chromosome C13520 Processing chromosome C13520 INFO [2014-07-02 14:58:20,020] [Preprocessor.java:241] [main] Processing chromosome C13528 Processing chromosome C13528 INFO [2014-07-02 14:58:20,084] [Preprocessor.java:241] [main] Processing chromosome C13532 Processing chromosome C13532 INFO [2014-07-02 14:58:20,131] [Preprocessor.java:241] [main] Processing chromosome C13552 Processing chromosome C13552 INFO [2014-07-02 14:58:20,183] [Preprocessor.java:241] [main] Processing chromosome C13584 Processing chromosome C13584 INFO [2014-07-02 14:58:20,285] [Preprocessor.java:241] [main] Processing chromosome C13590 Processing chromosome C13590 INFO [2014-07-02 14:58:20,319] [Preprocessor.java:241] [main] Processing chromosome C13592 Processing chromosome C13592 INFO [2014-07-02 14:58:20,383] [Preprocessor.java:241] [main] Processing chromosome C13614 Processing chromosome C13614 INFO [2014-07-02 14:58:20,442] [Preprocessor.java:241] [main] Processing chromosome C13642 Processing chromosome C13642 INFO [2014-07-02 14:58:20,483] [Preprocessor.java:241] [main] Processing chromosome C13652 Processing chromosome C13652 INFO [2014-07-02 14:58:20,535] [Preprocessor.java:241] [main] Processing chromosome C13654 Processing chromosome C13654 INFO [2014-07-02 14:58:20,589] [Preprocessor.java:241] [main] Processing chromosome C13688 Processing chromosome C13688 INFO [2014-07-02 14:58:20,610] [Preprocessor.java:241] [main] Processing chromosome C13690 Processing chromosome C13690 INFO [2014-07-02 14:58:20,675] [Preprocessor.java:241] [main] Processing chromosome C13712 Processing chromosome C13712 INFO [2014-07-02 14:58:20,751] [Preprocessor.java:241] [main] Processing chromosome C13716 Processing chromosome C13716 INFO [2014-07-02 14:58:20,811] [Preprocessor.java:241] [main] Processing chromosome C1373 Processing chromosome C1373 INFO [2014-07-02 14:58:20,868] [Preprocessor.java:241] [main] Processing chromosome C13732 Processing chromosome C13732 INFO [2014-07-02 14:58:20,927] [Preprocessor.java:241] [main] Processing chromosome C13786 Processing chromosome C13786 INFO [2014-07-02 14:58:20,972] [Preprocessor.java:241] [main] Processing chromosome C13810 Processing chromosome C13810 INFO [2014-07-02 14:58:21,028] [Preprocessor.java:241] [main] Processing chromosome C1383 Processing chromosome C1383 INFO [2014-07-02 14:58:21,084] [Preprocessor.java:241] [main] Processing chromosome C13852 Processing chromosome C13852 INFO [2014-07-02 14:58:21,118] [Preprocessor.java:241] [main] Processing chromosome C13854 Processing chromosome C13854 INFO [2014-07-02 14:58:21,218] [Preprocessor.java:241] [main] Processing chromosome C13868 Processing chromosome C13868 INFO [2014-07-02 14:58:21,249] [Preprocessor.java:241] [main] Processing chromosome C13878 Processing chromosome C13878 INFO [2014-07-02 14:58:21,310] [Preprocessor.java:241] [main] Processing chromosome C13888 Processing chromosome C13888 INFO [2014-07-02 14:58:21,362] [Preprocessor.java:241] [main] Processing chromosome C1389 Processing chromosome C1389 INFO [2014-07-02 14:58:21,419] [Preprocessor.java:241] [main] Processing chromosome C13904 Processing chromosome C13904 INFO [2014-07-02 14:58:21,451] [Preprocessor.java:241] [main] Processing chromosome C13908 Processing chromosome C13908 INFO [2014-07-02 14:58:21,492] [Preprocessor.java:241] [main] Processing chromosome C13916 Processing chromosome C13916 INFO [2014-07-02 14:58:21,522] [Preprocessor.java:241] [main] Processing chromosome C13930 Processing chromosome C13930 INFO [2014-07-02 14:58:21,565] [Preprocessor.java:241] [main] Processing chromosome C13940 Processing chromosome C13940 INFO [2014-07-02 14:58:21,645] [Preprocessor.java:241] [main] Processing chromosome C13950 Processing chromosome C13950 INFO [2014-07-02 14:58:21,834] [Preprocessor.java:241] [main] Processing chromosome C14008 Processing chromosome C14008 INFO [2014-07-02 14:58:21,863] [Preprocessor.java:241] [main] Processing chromosome C14022 Processing chromosome C14022 INFO [2014-07-02 14:58:25,537] [Preprocessor.java:241] [main] Processing chromosome C14060 Processing chromosome C14060 INFO [2014-07-02 14:58:25,555] [Preprocessor.java:241] [main] Processing chromosome C14086 Processing chromosome C14086 INFO [2014-07-02 14:58:25,636] [Preprocessor.java:241] [main] Processing chromosome C14104 Processing chromosome C14104 INFO [2014-07-02 14:58:25,695] [Preprocessor.java:241] [main] Processing chromosome C14108 Processing chromosome C14108 INFO [2014-07-02 14:58:25,708] [Preprocessor.java:241] [main] Processing chromosome C14170 Processing chromosome C14170 INFO [2014-07-02 14:58:25,741] [Preprocessor.java:241] [main] Processing chromosome C14180 Processing chromosome C14180 INFO [2014-07-02 14:58:25,779] [Preprocessor.java:241] [main] Processing chromosome C14184 Processing chromosome C14184 INFO [2014-07-02 14:58:25,798] [Preprocessor.java:241] [main] Processing chromosome C14186 Processing chromosome C14186 INFO [2014-07-02 14:58:25,905] [Preprocessor.java:241] [main] Processing chromosome C14188 Processing chromosome C14188 INFO [2014-07-02 14:58:25,931] [Preprocessor.java:241] [main] Processing chromosome C14214 Processing chromosome C14214 INFO [2014-07-02 14:58:26,010] [Preprocessor.java:241] [main] Processing chromosome C14226 Processing chromosome C14226 INFO [2014-07-02 14:58:26,051] [Preprocessor.java:241] [main] Processing chromosome C14228 Processing chromosome C14228 INFO [2014-07-02 14:58:26,087] [Preprocessor.java:241] [main] Processing chromosome C14230 Processing chromosome C14230 INFO [2014-07-02 14:58:26,103] [Preprocessor.java:241] [main] Processing chromosome C14232 Processing chromosome C14232 INFO [2014-07-02 14:58:26,130] [Preprocessor.java:241] [main] Processing chromosome C14248 Processing chromosome C14248 INFO [2014-07-02 14:58:26,195] [Preprocessor.java:241] [main] Processing chromosome C14276 Processing chromosome C14276 INFO [2014-07-02 14:58:26,212] [Preprocessor.java:241] [main] Processing chromosome C14282 Processing chromosome C14282 INFO [2014-07-02 14:58:26,275] [Preprocessor.java:241] [main] Processing chromosome C14312 Processing chromosome C14312 INFO [2014-07-02 14:58:26,317] [Preprocessor.java:241] [main] Processing chromosome C14326 Processing chromosome C14326 INFO [2014-07-02 14:58:26,391] [Preprocessor.java:241] [main] Processing chromosome C14332 Processing chromosome C14332 INFO [2014-07-02 14:58:26,410] [Preprocessor.java:241] [main] Processing chromosome C14340 Processing chromosome C14340 INFO [2014-07-02 14:58:26,482] [Preprocessor.java:241] [main] Processing chromosome C14354 Processing chromosome C14354 INFO [2014-07-02 14:58:26,498] [Preprocessor.java:241] [main] Processing chromosome C14362 Processing chromosome C14362 INFO [2014-07-02 14:58:26,577] [Preprocessor.java:241] [main] Processing chromosome C14378 Processing chromosome C14378 INFO [2014-07-02 14:58:26,648] [Preprocessor.java:241] [main] Processing chromosome C14384 Processing chromosome C14384 INFO [2014-07-02 14:58:26,667] [Preprocessor.java:241] [main] Processing chromosome C14386 Processing chromosome C14386 INFO [2014-07-02 14:58:26,729] [Preprocessor.java:241] [main] Processing chromosome C14400 Processing chromosome C14400 INFO [2014-07-02 14:58:26,746] [Preprocessor.java:241] [main] Processing chromosome C14418 Processing chromosome C14418 INFO [2014-07-02 14:58:26,773] [Preprocessor.java:241] [main] Processing chromosome C14424 Processing chromosome C14424 INFO [2014-07-02 14:58:26,870] [Preprocessor.java:241] [main] Processing chromosome C14428 Processing chromosome C14428 INFO [2014-07-02 14:58:26,902] [Preprocessor.java:241] [main] Processing chromosome C14432 Processing chromosome C14432 INFO [2014-07-02 14:58:26,961] [Preprocessor.java:241] [main] Processing chromosome C14434 Processing chromosome C14434 INFO [2014-07-02 14:58:27,000] [Preprocessor.java:241] [main] Processing chromosome C14440 Processing chromosome C14440 INFO [2014-07-02 14:58:27,045] [Preprocessor.java:241] [main] Processing chromosome C14446 Processing chromosome C14446 INFO [2014-07-02 14:58:27,083] [Preprocessor.java:241] [main] Processing chromosome C14454 Processing chromosome C14454 INFO [2014-07-02 14:58:27,115] [Preprocessor.java:241] [main] Processing chromosome C14468 Processing chromosome C14468 INFO [2014-07-02 14:58:27,153] [Preprocessor.java:241] [main] Processing chromosome C14470 Processing chromosome C14470 INFO [2014-07-02 14:58:27,212] [Preprocessor.java:241] [main] Processing chromosome C14478 Processing chromosome C14478 INFO [2014-07-02 14:58:27,255] [Preprocessor.java:241] [main] Processing chromosome C14484 Processing chromosome C14484 INFO [2014-07-02 14:58:27,988] [Preprocessor.java:241] [main] Processing chromosome C14486 Processing chromosome C14486 INFO [2014-07-02 14:58:28,060] [Preprocessor.java:241] [main] Processing chromosome C14498 Processing chromosome C14498 INFO [2014-07-02 14:58:28,098] [Preprocessor.java:241] [main] Processing chromosome C14510 Processing chromosome C14510 INFO [2014-07-02 14:58:28,144] [Preprocessor.java:241] [main] Processing chromosome C14528 Processing chromosome C14528 INFO [2014-07-02 14:58:28,197] [Preprocessor.java:241] [main] Processing chromosome C14534 Processing chromosome C14534 INFO [2014-07-02 14:58:28,215] [Preprocessor.java:241] [main] Processing chromosome C14542 Processing chromosome C14542 INFO [2014-07-02 14:58:28,248] [Preprocessor.java:241] [main] Processing chromosome C14546 Processing chromosome C14546 INFO [2014-07-02 14:58:28,263] [Preprocessor.java:241] [main] Processing chromosome C14554 Processing chromosome C14554 INFO [2014-07-02 14:58:28,295] [Preprocessor.java:241] [main] Processing chromosome C14560 Processing chromosome C14560 INFO [2014-07-02 14:58:28,343] [Preprocessor.java:241] [main] Processing chromosome C14566 Processing chromosome C14566 INFO [2014-07-02 14:58:28,399] [Preprocessor.java:241] [main] Processing chromosome C14568 Processing chromosome C14568 INFO [2014-07-02 14:58:28,478] [Preprocessor.java:241] [main] Processing chromosome C14614 Processing chromosome C14614 INFO [2014-07-02 14:58:28,530] [Preprocessor.java:241] [main] Processing chromosome C14636 Processing chromosome C14636 INFO [2014-07-02 14:58:28,583] [Preprocessor.java:241] [main] Processing chromosome C14638 Processing chromosome C14638 INFO [2014-07-02 14:58:28,612] [Preprocessor.java:241] [main] Processing chromosome C14650 Processing chromosome C14650 INFO [2014-07-02 14:58:28,629] [Preprocessor.java:241] [main] Processing chromosome C14692 Processing chromosome C14692 INFO [2014-07-02 14:58:28,684] [Preprocessor.java:241] [main] Processing chromosome C14706 Processing chromosome C14706 INFO [2014-07-02 14:58:28,726] [Preprocessor.java:241] [main] Processing chromosome C14710 Processing chromosome C14710 INFO [2014-07-02 14:58:28,766] [Preprocessor.java:241] [main] Processing chromosome C14716 Processing chromosome C14716 INFO [2014-07-02 14:58:28,815] [Preprocessor.java:241] [main] Processing chromosome C14718 Processing chromosome C14718 INFO [2014-07-02 14:58:28,851] [Preprocessor.java:241] [main] Processing chromosome C14734 Processing chromosome C14734 INFO [2014-07-02 14:58:28,936] [Preprocessor.java:241] [main] Processing chromosome C14744 Processing chromosome C14744 INFO [2014-07-02 14:58:28,999] [Preprocessor.java:241] [main] Processing chromosome C14774 Processing chromosome C14774 INFO [2014-07-02 14:58:29,042] [Preprocessor.java:241] [main] Processing chromosome C14782 Processing chromosome C14782 INFO [2014-07-02 14:58:29,085] [Preprocessor.java:241] [main] Processing chromosome C14788 Processing chromosome C14788 INFO [2014-07-02 14:58:29,129] [Preprocessor.java:241] [main] Processing chromosome C1479 Processing chromosome C1479 INFO [2014-07-02 14:58:29,151] [Preprocessor.java:241] [main] Processing chromosome C14790 Processing chromosome C14790 INFO [2014-07-02 14:58:29,219] [Preprocessor.java:241] [main] Processing chromosome C14798 Processing chromosome C14798 INFO [2014-07-02 14:58:29,232] [Preprocessor.java:241] [main] Processing chromosome C14800 Processing chromosome C14800 INFO [2014-07-02 14:58:29,290] [Preprocessor.java:241] [main] Processing chromosome C14818 Processing chromosome C14818 INFO [2014-07-02 14:58:29,331] [Preprocessor.java:241] [main] Processing chromosome C14822 Processing chromosome C14822 INFO [2014-07-02 14:58:29,366] [Preprocessor.java:241] [main] Processing chromosome C14832 Processing chromosome C14832 INFO [2014-07-02 14:58:29,425] [Preprocessor.java:241] [main] Processing chromosome C14848 Processing chromosome C14848 INFO [2014-07-02 14:58:29,495] [Preprocessor.java:241] [main] Processing chromosome C14852 Processing chromosome C14852 INFO [2014-07-02 14:58:29,541] [Preprocessor.java:241] [main] Processing chromosome C14858 Processing chromosome C14858 INFO [2014-07-02 14:58:29,599] [Preprocessor.java:241] [main] Processing chromosome C14868 Processing chromosome C14868 INFO [2014-07-02 14:58:29,666] [Preprocessor.java:241] [main] Processing chromosome C14880 Processing chromosome C14880 INFO [2014-07-02 14:58:29,702] [Preprocessor.java:241] [main] Processing chromosome C14902 Processing chromosome C14902 INFO [2014-07-02 14:58:29,754] [Preprocessor.java:241] [main] Processing chromosome C14906 Processing chromosome C14906 INFO [2014-07-02 14:58:29,810] [Preprocessor.java:241] [main] Processing chromosome C14910 Processing chromosome C14910 INFO [2014-07-02 14:58:29,867] [Preprocessor.java:241] [main] Processing chromosome C14920 Processing chromosome C14920 INFO [2014-07-02 14:58:29,900] [Preprocessor.java:241] [main] Processing chromosome C14924 Processing chromosome C14924 INFO [2014-07-02 14:58:30,000] [Preprocessor.java:241] [main] Processing chromosome C14940 Processing chromosome C14940 INFO [2014-07-02 14:58:30,054] [Preprocessor.java:241] [main] Processing chromosome C14946 Processing chromosome C14946 INFO [2014-07-02 14:58:30,115] [Preprocessor.java:241] [main] Processing chromosome C14952 Processing chromosome C14952 INFO [2014-07-02 14:58:30,151] [Preprocessor.java:241] [main] Processing chromosome C14958 Processing chromosome C14958 INFO [2014-07-02 14:58:30,208] [Preprocessor.java:241] [main] Processing chromosome C14966 Processing chromosome C14966 INFO [2014-07-02 14:58:30,237] [Preprocessor.java:241] [main] Processing chromosome C14984 Processing chromosome C14984 INFO [2014-07-02 14:58:30,294] [Preprocessor.java:241] [main] Processing chromosome C15006 Processing chromosome C15006 INFO [2014-07-02 14:58:30,344] [Preprocessor.java:241] [main] Processing chromosome C15022 Processing chromosome C15022 INFO [2014-07-02 14:58:30,398] [Preprocessor.java:241] [main] Processing chromosome C15024 Processing chromosome C15024 INFO [2014-07-02 14:58:30,473] [Preprocessor.java:241] [main] Processing chromosome C1503 Processing chromosome C1503 INFO [2014-07-02 14:58:30,534] [Preprocessor.java:241] [main] Processing chromosome C15052 Processing chromosome C15052 INFO [2014-07-02 14:58:30,547] [Preprocessor.java:241] [main] Processing chromosome C15064 Processing chromosome C15064 INFO [2014-07-02 14:58:30,614] [Preprocessor.java:241] [main] Processing chromosome C15086 Processing chromosome C15086 INFO [2014-07-02 14:58:30,627] [Preprocessor.java:241] [main] Processing chromosome C15100 Processing chromosome C15100 INFO [2014-07-02 14:58:30,680] [Preprocessor.java:241] [main] Processing chromosome C1513 Processing chromosome C1513 INFO [2014-07-02 14:58:30,743] [Preprocessor.java:241] [main] Processing chromosome C15142 Processing chromosome C15142 INFO [2014-07-02 14:58:30,780] [Preprocessor.java:241] [main] Processing chromosome C15156 Processing chromosome C15156 INFO [2014-07-02 14:58:30,831] [Preprocessor.java:241] [main] Processing chromosome C15162 Processing chromosome C15162 INFO [2014-07-02 14:58:30,846] [Preprocessor.java:241] [main] Processing chromosome C15180 Processing chromosome C15180 INFO [2014-07-02 14:58:30,929] [Preprocessor.java:241] [main] Processing chromosome C15188 Processing chromosome C15188 INFO [2014-07-02 14:58:30,990] [Preprocessor.java:241] [main] Processing chromosome C15190 Processing chromosome C15190 INFO [2014-07-02 14:58:31,012] [Preprocessor.java:241] [main] Processing chromosome C15202 Processing chromosome C15202 INFO [2014-07-02 14:58:31,025] [Preprocessor.java:241] [main] Processing chromosome C15204 Processing chromosome C15204 INFO [2014-07-02 14:58:31,046] [Preprocessor.java:241] [main] Processing chromosome C15208 Processing chromosome C15208 INFO [2014-07-02 14:58:31,067] [Preprocessor.java:241] [main] Processing chromosome C15210 Processing chromosome C15210 INFO [2014-07-02 14:58:31,088] [Preprocessor.java:241] [main] Processing chromosome C15212 Processing chromosome C15212 INFO [2014-07-02 14:58:31,121] [Preprocessor.java:241] [main] Processing chromosome C15240 Processing chromosome C15240 INFO [2014-07-02 14:58:31,157] [Preprocessor.java:241] [main] Processing chromosome C15242 Processing chromosome C15242 INFO [2014-07-02 14:58:31,218] [Preprocessor.java:241] [main] Processing chromosome C15260 Processing chromosome C15260 INFO [2014-07-02 14:58:31,274] [Preprocessor.java:241] [main] Processing chromosome C1531 Processing chromosome C1531 INFO [2014-07-02 14:58:31,335] [Preprocessor.java:241] [main] Processing chromosome C15322 Processing chromosome C15322 INFO [2014-07-02 14:58:31,366] [Preprocessor.java:241] [main] Processing chromosome C15324 Processing chromosome C15324 INFO [2014-07-02 14:58:31,433] [Preprocessor.java:241] [main] Processing chromosome C15338 Processing chromosome C15338 INFO [2014-07-02 14:58:31,473] [Preprocessor.java:241] [main] Processing chromosome C15342 Processing chromosome C15342 INFO [2014-07-02 14:58:31,505] [Preprocessor.java:241] [main] Processing chromosome C15346 Processing chromosome C15346 INFO [2014-07-02 14:58:31,517] [Preprocessor.java:241] [main] Processing chromosome C1535 Processing chromosome C1535 INFO [2014-07-02 14:58:31,559] [Preprocessor.java:241] [main] Processing chromosome C15352 Processing chromosome C15352 INFO [2014-07-02 14:58:31,611] [Preprocessor.java:241] [main] Processing chromosome C15386 Processing chromosome C15386 INFO [2014-07-02 14:58:31,671] [Preprocessor.java:241] [main] Processing chromosome C15404 Processing chromosome C15404 INFO [2014-07-02 14:58:31,720] [Preprocessor.java:241] [main] Processing chromosome C15430 Processing chromosome C15430 INFO [2014-07-02 14:58:31,792] [Preprocessor.java:241] [main] Processing chromosome C15436 Processing chromosome C15436 INFO [2014-07-02 14:58:31,805] [Preprocessor.java:241] [main] Processing chromosome C15440 Processing chromosome C15440 INFO [2014-07-02 14:58:31,858] [Preprocessor.java:241] [main] Processing chromosome C15448 Processing chromosome C15448 INFO [2014-07-02 14:58:31,938] [Preprocessor.java:241] [main] Processing chromosome C15458 Processing chromosome C15458 INFO [2014-07-02 14:58:31,967] [Preprocessor.java:241] [main] Processing chromosome C15460 Processing chromosome C15460 INFO [2014-07-02 14:58:31,998] [Preprocessor.java:241] [main] Processing chromosome C15466 Processing chromosome C15466 INFO [2014-07-02 14:58:32,066] [Preprocessor.java:241] [main] Processing chromosome C15494 Processing chromosome C15494 INFO [2014-07-02 14:58:32,078] [Preprocessor.java:241] [main] Processing chromosome C15498 Processing chromosome C15498 INFO [2014-07-02 14:58:32,120] [Preprocessor.java:241] [main] Processing chromosome C15522 Processing chromosome C15522 INFO [2014-07-02 14:58:32,190] [Preprocessor.java:241] [main] Processing chromosome C15538 Processing chromosome C15538 INFO [2014-07-02 14:58:32,232] [Preprocessor.java:241] [main] Processing chromosome C15544 Processing chromosome C15544 INFO [2014-07-02 14:58:32,262] [Preprocessor.java:241] [main] Processing chromosome C15552 Processing chromosome C15552 INFO [2014-07-02 14:58:32,282] [Preprocessor.java:241] [main] Processing chromosome C15560 Processing chromosome C15560 INFO [2014-07-02 14:58:32,344] [Preprocessor.java:241] [main] Processing chromosome C15568 Processing chromosome C15568 INFO [2014-07-02 14:58:32,401] [Preprocessor.java:241] [main] Processing chromosome C15592 Processing chromosome C15592 INFO [2014-07-02 14:58:32,469] [Preprocessor.java:241] [main] Processing chromosome C15646 Processing chromosome C15646 INFO [2014-07-02 14:58:32,529] [Preprocessor.java:241] [main] Processing chromosome C15678 Processing chromosome C15678 INFO [2014-07-02 14:58:32,576] [Preprocessor.java:241] [main] Processing chromosome C15720 Processing chromosome C15720 INFO [2014-07-02 14:58:32,645] [Preprocessor.java:241] [main] Processing chromosome C15750 Processing chromosome C15750 INFO [2014-07-02 14:58:32,658] [Preprocessor.java:241] [main] Processing chromosome C15766 Processing chromosome C15766 INFO [2014-07-02 14:58:32,704] [Preprocessor.java:241] [main] Processing chromosome C15798 Processing chromosome C15798 INFO [2014-07-02 14:58:32,754] [Preprocessor.java:241] [main] Processing chromosome C15814 Processing chromosome C15814 INFO [2014-07-02 14:58:32,764] [Preprocessor.java:241] [main] Processing chromosome C15816 Processing chromosome C15816 INFO [2014-07-02 14:58:32,828] [Preprocessor.java:241] [main] Processing chromosome C15818 Processing chromosome C15818 INFO [2014-07-02 14:58:32,840] [Preprocessor.java:241] [main] Processing chromosome C15846 Processing chromosome C15846 INFO [2014-07-02 14:58:32,914] [Preprocessor.java:241] [main] Processing chromosome C15848 Processing chromosome C15848 INFO [2014-07-02 14:58:32,974] [Preprocessor.java:241] [main] Processing chromosome C1587 Processing chromosome C1587 INFO [2014-07-02 14:58:33,010] [Preprocessor.java:241] [main] Processing chromosome C15892 Processing chromosome C15892 INFO [2014-07-02 14:58:33,078] [Preprocessor.java:241] [main] Processing chromosome C15894 Processing chromosome C15894 INFO [2014-07-02 14:58:33,136] [Preprocessor.java:241] [main] Processing chromosome C15902 Processing chromosome C15902 INFO [2014-07-02 14:58:33,174] [Preprocessor.java:241] [main] Processing chromosome C15904 Processing chromosome C15904 INFO [2014-07-02 14:58:33,209] [Preprocessor.java:241] [main] Processing chromosome C15908 Processing chromosome C15908 INFO [2014-07-02 14:58:33,228] [Preprocessor.java:241] [main] Processing chromosome C15922 Processing chromosome C15922 INFO [2014-07-02 14:58:33,254] [Preprocessor.java:241] [main] Processing chromosome C15932 Processing chromosome C15932 INFO [2014-07-02 14:58:33,312] [Preprocessor.java:241] [main] Processing chromosome C15934 Processing chromosome C15934 INFO [2014-07-02 14:58:33,343] [Preprocessor.java:241] [main] Processing chromosome C15944 Processing chromosome C15944 INFO [2014-07-02 14:58:33,362] [Preprocessor.java:241] [main] Processing chromosome C15952 Processing chromosome C15952 INFO [2014-07-02 14:58:33,451] [Preprocessor.java:241] [main] Processing chromosome C15982 Processing chromosome C15982 INFO [2014-07-02 14:58:33,479] [Preprocessor.java:241] [main] Processing chromosome C15990 Processing chromosome C15990 INFO [2014-07-02 14:58:33,494] [Preprocessor.java:241] [main] Processing chromosome C15992 Processing chromosome C15992 INFO [2014-07-02 14:58:33,548] [Preprocessor.java:241] [main] Processing chromosome C15994 Processing chromosome C15994 INFO [2014-07-02 14:58:33,607] [Preprocessor.java:241] [main] Processing chromosome C16002 Processing chromosome C16002 INFO [2014-07-02 14:58:33,659] [Preprocessor.java:241] [main] Processing chromosome C16004 Processing chromosome C16004 INFO [2014-07-02 14:58:33,724] [Preprocessor.java:241] [main] Processing chromosome C16014 Processing chromosome C16014 INFO [2014-07-02 14:58:33,744] [Preprocessor.java:241] [main] Processing chromosome C16022 Processing chromosome C16022 INFO [2014-07-02 14:58:33,809] [Preprocessor.java:241] [main] Processing chromosome C16024 Processing chromosome C16024 INFO [2014-07-02 14:58:33,821] [Preprocessor.java:241] [main] Processing chromosome C16042 Processing chromosome C16042 INFO [2014-07-02 14:58:33,912] [Preprocessor.java:241] [main] Processing chromosome C16058 Processing chromosome C16058 INFO [2014-07-02 14:58:33,969] [Preprocessor.java:241] [main] Processing chromosome C16062 Processing chromosome C16062 INFO [2014-07-02 14:58:33,991] [Preprocessor.java:241] [main] Processing chromosome C16066 Processing chromosome C16066 INFO [2014-07-02 14:58:34,060] [Preprocessor.java:241] [main] Processing chromosome C16068 Processing chromosome C16068 INFO [2014-07-02 14:58:34,084] [Preprocessor.java:241] [main] Processing chromosome C16070 Processing chromosome C16070 INFO [2014-07-02 14:58:34,114] [Preprocessor.java:241] [main] Processing chromosome C16072 Processing chromosome C16072 INFO [2014-07-02 14:58:34,125] [Preprocessor.java:241] [main] Processing chromosome C16088 Processing chromosome C16088 INFO [2014-07-02 14:58:34,190] [Preprocessor.java:241] [main] Processing chromosome C16102 Processing chromosome C16102 INFO [2014-07-02 14:58:34,245] [Preprocessor.java:241] [main] Processing chromosome C16106 Processing chromosome C16106 INFO [2014-07-02 14:58:34,271] [Preprocessor.java:241] [main] Processing chromosome C16108 Processing chromosome C16108 INFO [2014-07-02 14:58:34,297] [Preprocessor.java:241] [main] Processing chromosome C16110 Processing chromosome C16110 INFO [2014-07-02 14:58:34,319] [Preprocessor.java:241] [main] Processing chromosome C16144 Processing chromosome C16144 INFO [2014-07-02 14:58:34,389] [Preprocessor.java:241] [main] Processing chromosome C1619 Processing chromosome C1619 INFO [2014-07-02 14:58:34,447] [Preprocessor.java:241] [main] Processing chromosome C16192 Processing chromosome C16192 INFO [2014-07-02 14:58:34,519] [Preprocessor.java:241] [main] Processing chromosome C16194 Processing chromosome C16194 INFO [2014-07-02 14:58:34,551] [Preprocessor.java:241] [main] Processing chromosome C16204 Processing chromosome C16204 INFO [2014-07-02 14:58:34,625] [Preprocessor.java:241] [main] Processing chromosome C16208 Processing chromosome C16208 INFO [2014-07-02 14:58:34,680] [Preprocessor.java:241] [main] Processing chromosome C1623 Processing chromosome C1623 INFO [2014-07-02 14:58:34,713] [Preprocessor.java:241] [main] Processing chromosome C16244 Processing chromosome C16244 INFO [2014-07-02 14:58:34,776] [Preprocessor.java:241] [main] Processing chromosome C16250 Processing chromosome C16250 INFO [2014-07-02 14:58:34,841] [Preprocessor.java:241] [main] Processing chromosome C16262 Processing chromosome C16262 INFO [2014-07-02 14:58:34,867] [Preprocessor.java:241] [main] Processing chromosome C16282 Processing chromosome C16282 INFO [2014-07-02 14:58:34,889] [Preprocessor.java:241] [main] Processing chromosome C16296 Processing chromosome C16296 INFO [2014-07-02 14:58:34,943] [Preprocessor.java:241] [main] Processing chromosome C16298 Processing chromosome C16298 INFO [2014-07-02 14:58:34,988] [Preprocessor.java:241] [main] Processing chromosome C16312 Processing chromosome C16312 INFO [2014-07-02 14:58:35,014] [Preprocessor.java:241] [main] Processing chromosome C16338 Processing chromosome C16338 INFO [2014-07-02 14:58:35,081] [Preprocessor.java:241] [main] Processing chromosome C16390 Processing chromosome C16390 INFO [2014-07-02 14:58:35,152] [Preprocessor.java:241] [main] Processing chromosome C16392 Processing chromosome C16392 INFO [2014-07-02 14:58:35,172] [Preprocessor.java:241] [main] Processing chromosome C16400 Processing chromosome C16400 INFO [2014-07-02 14:58:35,237] [Preprocessor.java:241] [main] Processing chromosome C16404 Processing chromosome C16404 INFO [2014-07-02 14:58:35,261] [Preprocessor.java:241] [main] Processing chromosome C16420 Processing chromosome C16420 INFO [2014-07-02 14:58:35,309] [Preprocessor.java:241] [main] Processing chromosome C16428 Processing chromosome C16428 INFO [2014-07-02 14:58:35,373] [Preprocessor.java:241] [main] Processing chromosome C16434 Processing chromosome C16434 INFO [2014-07-02 14:58:35,395] [Preprocessor.java:241] [main] Processing chromosome C16458 Processing chromosome C16458 INFO [2014-07-02 14:58:35,439] [Preprocessor.java:241] [main] Processing chromosome C16462 Processing chromosome C16462 INFO [2014-07-02 14:58:35,461] [Preprocessor.java:241] [main] Processing chromosome C16492 Processing chromosome C16492 INFO [2014-07-02 14:58:35,473] [Preprocessor.java:241] [main] Processing chromosome C16494 Processing chromosome C16494 INFO [2014-07-02 14:58:35,503] [Preprocessor.java:241] [main] Processing chromosome C16512 Processing chromosome C16512 INFO [2014-07-02 14:58:35,568] [Preprocessor.java:241] [main] Processing chromosome C16516 Processing chromosome C16516 INFO [2014-07-02 14:58:35,605] [Preprocessor.java:241] [main] Processing chromosome C16520 Processing chromosome C16520 INFO [2014-07-02 14:58:35,647] [Preprocessor.java:241] [main] Processing chromosome C16540 Processing chromosome C16540 INFO [2014-07-02 14:58:35,685] [Preprocessor.java:241] [main] Processing chromosome C16542 Processing chromosome C16542 INFO [2014-07-02 14:58:35,697] [Preprocessor.java:241] [main] Processing chromosome C16554 Processing chromosome C16554 INFO [2014-07-02 14:58:35,740] [Preprocessor.java:241] [main] Processing chromosome C16556 Processing chromosome C16556 INFO [2014-07-02 14:58:35,765] [Preprocessor.java:241] [main] Processing chromosome C16564 Processing chromosome C16564 INFO [2014-07-02 14:58:35,797] [Preprocessor.java:241] [main] Processing chromosome C16582 Processing chromosome C16582 INFO [2014-07-02 14:58:35,844] [Preprocessor.java:241] [main] Processing chromosome C16586 Processing chromosome C16586 INFO [2014-07-02 14:58:35,873] [Preprocessor.java:241] [main] Processing chromosome C16606 Processing chromosome C16606 INFO [2014-07-02 14:58:35,931] [Preprocessor.java:241] [main] Processing chromosome C16608 Processing chromosome C16608 INFO [2014-07-02 14:58:35,948] [Preprocessor.java:241] [main] Processing chromosome C1661 Processing chromosome C1661 INFO [2014-07-02 14:58:36,002] [Preprocessor.java:241] [main] Processing chromosome C16612 Processing chromosome C16612 INFO [2014-07-02 14:58:36,019] [Preprocessor.java:241] [main] Processing chromosome C16622 Processing chromosome C16622 INFO [2014-07-02 14:58:36,044] [Preprocessor.java:241] [main] Processing chromosome C16636 Processing chromosome C16636 INFO [2014-07-02 14:58:36,074] [Preprocessor.java:241] [main] Processing chromosome C16666 Processing chromosome C16666 INFO [2014-07-02 14:58:36,084] [Preprocessor.java:241] [main] Processing chromosome C16700 Processing chromosome C16700 INFO [2014-07-02 14:58:36,098] [Preprocessor.java:241] [main] Processing chromosome C16708 Processing chromosome C16708 INFO [2014-07-02 14:58:36,155] [Preprocessor.java:241] [main] Processing chromosome C16710 Processing chromosome C16710 INFO [2014-07-02 14:58:36,165] [Preprocessor.java:241] [main] Processing chromosome C16742 Processing chromosome C16742 INFO [2014-07-02 14:58:36,190] [Preprocessor.java:241] [main] Processing chromosome C16744 Processing chromosome C16744 INFO [2014-07-02 14:58:36,212] [Preprocessor.java:241] [main] Processing chromosome C16760 Processing chromosome C16760 INFO [2014-07-02 14:58:36,278] [Preprocessor.java:241] [main] Processing chromosome C16766 Processing chromosome C16766 INFO [2014-07-02 14:58:36,309] [Preprocessor.java:241] [main] Processing chromosome C16768 Processing chromosome C16768 INFO [2014-07-02 14:58:36,343] [Preprocessor.java:241] [main] Processing chromosome C16786 Processing chromosome C16786 INFO [2014-07-02 14:58:36,403] [Preprocessor.java:241] [main] Processing chromosome C16796 Processing chromosome C16796 INFO [2014-07-02 14:58:36,415] [Preprocessor.java:241] [main] Processing chromosome C16798 Processing chromosome C16798 INFO [2014-07-02 14:58:36,477] [Preprocessor.java:241] [main] Processing chromosome C16806 Processing chromosome C16806 INFO [2014-07-02 14:58:36,488] [Preprocessor.java:241] [main] Processing chromosome C16818 Processing chromosome C16818 INFO [2014-07-02 14:58:36,511] [Preprocessor.java:241] [main] Processing chromosome C16842 Processing chromosome C16842 INFO [2014-07-02 14:58:36,541] [Preprocessor.java:241] [main] Processing chromosome C16854 Processing chromosome C16854 INFO [2014-07-02 14:58:36,565] [Preprocessor.java:241] [main] Processing chromosome C16858 Processing chromosome C16858 INFO [2014-07-02 14:58:36,581] [Preprocessor.java:241] [main] Processing chromosome C16864 Processing chromosome C16864 INFO [2014-07-02 14:58:36,620] [Preprocessor.java:241] [main] Processing chromosome C16870 Processing chromosome C16870 INFO [2014-07-02 14:58:36,680] [Preprocessor.java:241] [main] Processing chromosome C16902 Processing chromosome C16902 INFO [2014-07-02 14:58:36,691] [Preprocessor.java:241] [main] Processing chromosome C16928 Processing chromosome C16928 INFO [2014-07-02 14:58:36,706] [Preprocessor.java:241] [main] Processing chromosome C16936 Processing chromosome C16936 INFO [2014-07-02 14:58:36,763] [Preprocessor.java:241] [main] Processing chromosome C16948 Processing chromosome C16948 INFO [2014-07-02 14:58:36,802] [Preprocessor.java:241] [main] Processing chromosome C16958 Processing chromosome C16958 INFO [2014-07-02 14:58:36,829] [Preprocessor.java:241] [main] Processing chromosome C16978 Processing chromosome C16978 INFO [2014-07-02 14:58:36,844] [Preprocessor.java:241] [main] Processing chromosome C17 Processing chromosome C17 INFO [2014-07-02 14:58:36,882] [Preprocessor.java:241] [main] Processing chromosome C17000 Processing chromosome C17000 INFO [2014-07-02 14:58:36,913] [Preprocessor.java:241] [main] Processing chromosome C17006 Processing chromosome C17006 INFO [2014-07-02 14:58:36,927] [Preprocessor.java:241] [main] Processing chromosome C17014 Processing chromosome C17014 INFO [2014-07-02 14:58:36,950] [Preprocessor.java:241] [main] Processing chromosome C17016 Processing chromosome C17016 INFO [2014-07-02 14:58:37,002] [Preprocessor.java:241] [main] Processing chromosome C17028 Processing chromosome C17028 INFO [2014-07-02 14:58:37,052] [Preprocessor.java:241] [main] Processing chromosome C17036 Processing chromosome C17036 INFO [2014-07-02 14:58:37,076] [Preprocessor.java:241] [main] Processing chromosome C17052 Processing chromosome C17052 INFO [2014-07-02 14:58:37,135] [Preprocessor.java:241] [main] Processing chromosome C17054 Processing chromosome C17054 INFO [2014-07-02 14:58:37,146] [Preprocessor.java:241] [main] Processing chromosome C17056 Processing chromosome C17056 INFO [2014-07-02 14:58:37,193] [Preprocessor.java:241] [main] Processing chromosome C17064 Processing chromosome C17064 INFO [2014-07-02 14:58:37,245] [Preprocessor.java:241] [main] Processing chromosome C17076 Processing chromosome C17076 INFO [2014-07-02 14:58:37,269] [Preprocessor.java:241] [main] Processing chromosome C17080 Processing chromosome C17080 INFO [2014-07-02 14:58:37,279] [Preprocessor.java:241] [main] Processing chromosome C17098 Processing chromosome C17098 INFO [2014-07-02 14:58:37,318] [Preprocessor.java:241] [main] Processing chromosome C17102 Processing chromosome C17102 INFO [2014-07-02 14:58:37,356] [Preprocessor.java:241] [main] Processing chromosome C17108 Processing chromosome C17108 INFO [2014-07-02 14:58:37,414] [Preprocessor.java:241] [main] Processing chromosome C17116 Processing chromosome C17116 INFO [2014-07-02 14:58:37,464] [Preprocessor.java:241] [main] Processing chromosome C17130 Processing chromosome C17130 INFO [2014-07-02 14:58:37,487] [Preprocessor.java:241] [main] Processing chromosome C17134 Processing chromosome C17134 INFO [2014-07-02 14:58:37,542] [Preprocessor.java:241] [main] Processing chromosome C17150 Processing chromosome C17150 INFO [2014-07-02 14:58:37,595] [Preprocessor.java:241] [main] Processing chromosome C17158 Processing chromosome C17158 INFO [2014-07-02 14:58:37,650] [Preprocessor.java:241] [main] Processing chromosome C17170 Processing chromosome C17170 INFO [2014-07-02 14:58:37,670] [Preprocessor.java:241] [main] Processing chromosome C17174 Processing chromosome C17174 INFO [2014-07-02 14:58:37,711] [Preprocessor.java:241] [main] Processing chromosome C17186 Processing chromosome C17186 INFO [2014-07-02 14:58:37,749] [Preprocessor.java:241] [main] Processing chromosome C17210 Processing chromosome C17210 INFO [2014-07-02 14:58:37,787] [Preprocessor.java:241] [main] Processing chromosome C17212 Processing chromosome C17212 INFO [2014-07-02 14:58:37,857] [Preprocessor.java:241] [main] Processing chromosome C17240 Processing chromosome C17240 INFO [2014-07-02 14:58:37,877] [Preprocessor.java:241] [main] Processing chromosome C17242 Processing chromosome C17242 INFO [2014-07-02 14:58:37,913] [Preprocessor.java:241] [main] Processing chromosome C17244 Processing chromosome C17244 INFO [2014-07-02 14:58:37,934] [Preprocessor.java:241] [main] Processing chromosome C17262 Processing chromosome C17262 INFO [2014-07-02 14:58:37,967] [Preprocessor.java:241] [main] Processing chromosome C17274 Processing chromosome C17274 INFO [2014-07-02 14:58:38,017] [Preprocessor.java:241] [main] Processing chromosome C17300 Processing chromosome C17300 INFO [2014-07-02 14:58:38,053] [Preprocessor.java:241] [main] Processing chromosome C17316 Processing chromosome C17316 INFO [2014-07-02 14:58:38,096] [Preprocessor.java:241] [main] Processing chromosome C17332 Processing chromosome C17332 INFO [2014-07-02 14:58:38,122] [Preprocessor.java:241] [main] Processing chromosome C17342 Processing chromosome C17342 INFO [2014-07-02 14:58:38,165] [Preprocessor.java:241] [main] Processing chromosome C17348 Processing chromosome C17348 INFO [2014-07-02 14:58:38,174] [Preprocessor.java:241] [main] Processing chromosome C17358 Processing chromosome C17358 INFO [2014-07-02 14:58:38,221] [Preprocessor.java:241] [main] Processing chromosome C17362 Processing chromosome C17362 INFO [2014-07-02 14:58:38,230] [Preprocessor.java:241] [main] Processing chromosome C17376 Processing chromosome C17376 INFO [2014-07-02 14:58:38,275] [Preprocessor.java:241] [main] Processing chromosome C17388 Processing chromosome C17388 INFO [2014-07-02 14:58:38,287] [Preprocessor.java:241] [main] Processing chromosome C17394 Processing chromosome C17394 INFO [2014-07-02 14:58:38,309] [Preprocessor.java:241] [main] Processing chromosome C17402 Processing chromosome C17402 INFO [2014-07-02 14:58:38,375] [Preprocessor.java:241] [main] Processing chromosome C17406 Processing chromosome C17406 INFO [2014-07-02 14:58:38,403] [Preprocessor.java:241] [main] Processing chromosome C17424 Processing chromosome C17424 INFO [2014-07-02 14:58:38,412] [Preprocessor.java:241] [main] Processing chromosome C17470 Processing chromosome C17470 INFO [2014-07-02 14:58:38,458] [Preprocessor.java:241] [main] Processing chromosome C17472 Processing chromosome C17472 INFO [2014-07-02 14:58:38,512] [Preprocessor.java:241] [main] Processing chromosome C17476 Processing chromosome C17476 INFO [2014-07-02 14:58:38,537] [Preprocessor.java:241] [main] Processing chromosome C17480 Processing chromosome C17480 INFO [2014-07-02 14:58:38,574] [Preprocessor.java:241] [main] Processing chromosome C17486 Processing chromosome C17486 INFO [2014-07-02 14:58:38,599] [Preprocessor.java:241] [main] Processing chromosome C17494 Processing chromosome C17494 INFO [2014-07-02 14:58:38,673] [Preprocessor.java:241] [main] Processing chromosome C1751 Processing chromosome C1751 INFO [2014-07-02 14:58:38,734] [Preprocessor.java:241] [main] Processing chromosome C17514 Processing chromosome C17514 INFO [2014-07-02 14:58:38,771] [Preprocessor.java:241] [main] Processing chromosome C17526 Processing chromosome C17526 INFO [2014-07-02 14:58:38,822] [Preprocessor.java:241] [main] Processing chromosome C17540 Processing chromosome C17540 INFO [2014-07-02 14:58:38,869] [Preprocessor.java:241] [main] Processing chromosome C17544 Processing chromosome C17544 INFO [2014-07-02 14:58:38,891] [Preprocessor.java:241] [main] Processing chromosome C17552 Processing chromosome C17552 INFO [2014-07-02 14:58:38,929] [Preprocessor.java:241] [main] Processing chromosome C17556 Processing chromosome C17556 INFO [2014-07-02 14:58:38,968] [Preprocessor.java:241] [main] Processing chromosome C17574 Processing chromosome C17574 INFO [2014-07-02 14:58:39,018] [Preprocessor.java:241] [main] Processing chromosome C17580 Processing chromosome C17580 INFO [2014-07-02 14:58:39,072] [Preprocessor.java:241] [main] Processing chromosome C17582 Processing chromosome C17582 INFO [2014-07-02 14:58:39,082] [Preprocessor.java:241] [main] Processing chromosome C17602 Processing chromosome C17602 INFO [2014-07-02 14:58:39,161] [Preprocessor.java:241] [main] Processing chromosome C17604 Processing chromosome C17604 INFO [2014-07-02 14:58:39,212] [Preprocessor.java:241] [main] Processing chromosome C17630 Processing chromosome C17630 INFO [2014-07-02 14:58:39,240] [Preprocessor.java:241] [main] Processing chromosome C17634 Processing chromosome C17634 INFO [2014-07-02 14:58:39,249] [Preprocessor.java:241] [main] Processing chromosome C17662 Processing chromosome C17662 INFO [2014-07-02 14:58:39,275] [Preprocessor.java:241] [main] Processing chromosome C17664 Processing chromosome C17664 INFO [2014-07-02 14:58:39,289] [Preprocessor.java:241] [main] Processing chromosome C17666 Processing chromosome C17666 INFO [2014-07-02 14:58:39,297] [Preprocessor.java:241] [main] Processing chromosome C17676 Processing chromosome C17676 INFO [2014-07-02 14:58:39,351] [Preprocessor.java:241] [main] Processing chromosome C17678 Processing chromosome C17678 INFO [2014-07-02 14:58:39,404] [Preprocessor.java:241] [main] Processing chromosome C17682 Processing chromosome C17682 INFO [2014-07-02 14:58:39,430] [Preprocessor.java:241] [main] Processing chromosome C17684 Processing chromosome C17684 INFO [2014-07-02 14:58:39,458] [Preprocessor.java:241] [main] Processing chromosome C17688 Processing chromosome C17688 INFO [2014-07-02 14:58:39,478] [Preprocessor.java:241] [main] Processing chromosome C17710 Processing chromosome C17710 INFO [2014-07-02 14:58:39,519] [Preprocessor.java:241] [main] Processing chromosome C17728 Processing chromosome C17728 INFO [2014-07-02 14:58:39,528] [Preprocessor.java:241] [main] Processing chromosome C17738 Processing chromosome C17738 INFO [2014-07-02 14:58:39,588] [Preprocessor.java:241] [main] Processing chromosome C17746 Processing chromosome C17746 INFO [2014-07-02 14:58:39,647] [Preprocessor.java:241] [main] Processing chromosome C17748 Processing chromosome C17748 INFO [2014-07-02 14:58:39,661] [Preprocessor.java:241] [main] Processing chromosome C17750 Processing chromosome C17750 INFO [2014-07-02 14:58:39,686] [Preprocessor.java:241] [main] Processing chromosome C17762 Processing chromosome C17762 INFO [2014-07-02 14:58:39,748] [Preprocessor.java:241] [main] Processing chromosome C17770 Processing chromosome C17770 INFO [2014-07-02 14:58:39,765] [Preprocessor.java:241] [main] Processing chromosome C17772 Processing chromosome C17772 INFO [2014-07-02 14:58:39,775] [Preprocessor.java:241] [main] Processing chromosome C17794 Processing chromosome C17794 INFO [2014-07-02 14:58:39,799] [Preprocessor.java:241] [main] Processing chromosome C17802 Processing chromosome C17802 INFO [2014-07-02 14:58:39,834] [Preprocessor.java:241] [main] Processing chromosome C1781 Processing chromosome C1781 INFO [2014-07-02 14:58:39,871] [Preprocessor.java:241] [main] Processing chromosome C1783 Processing chromosome C1783 INFO [2014-07-02 14:58:39,924] [Preprocessor.java:241] [main] Processing chromosome C17830 Processing chromosome C17830 INFO [2014-07-02 14:58:39,965] [Preprocessor.java:241] [main] Processing chromosome C17838 Processing chromosome C17838 INFO [2014-07-02 14:58:39,978] [Preprocessor.java:241] [main] Processing chromosome C17852 Processing chromosome C17852 INFO [2014-07-02 14:58:40,001] [Preprocessor.java:241] [main] Processing chromosome C17864 Processing chromosome C17864 INFO [2014-07-02 14:58:40,021] [Preprocessor.java:241] [main] Processing chromosome C17886 Processing chromosome C17886 INFO [2014-07-02 14:58:40,033] [Preprocessor.java:241] [main] Processing chromosome C17888 Processing chromosome C17888 INFO [2014-07-02 14:58:40,045] [Preprocessor.java:241] [main] Processing chromosome C17894 Processing chromosome C17894 INFO [2014-07-02 14:58:40,060] [Preprocessor.java:241] [main] Processing chromosome C17906 Processing chromosome C17906 INFO [2014-07-02 14:58:40,077] [Preprocessor.java:241] [main] Processing chromosome C17920 Processing chromosome C17920 INFO [2014-07-02 14:58:40,086] [Preprocessor.java:241] [main] Processing chromosome C17940 Processing chromosome C17940 INFO [2014-07-02 14:58:40,141] [Preprocessor.java:241] [main] Processing chromosome C17944 Processing chromosome C17944 INFO [2014-07-02 14:58:40,164] [Preprocessor.java:241] [main] Processing chromosome C1795 Processing chromosome C1795 INFO [2014-07-02 14:58:40,224] [Preprocessor.java:241] [main] Processing chromosome C17950 Processing chromosome C17950 INFO [2014-07-02 14:58:40,258] [Preprocessor.java:241] [main] Processing chromosome C17954 Processing chromosome C17954 INFO [2014-07-02 14:58:40,291] [Preprocessor.java:241] [main] Processing chromosome C17958 Processing chromosome C17958 INFO [2014-07-02 14:58:40,308] [Preprocessor.java:241] [main] Processing chromosome C17960 Processing chromosome C17960 INFO [2014-07-02 14:58:40,371] [Preprocessor.java:241] [main] Processing chromosome C18008 Processing chromosome C18008 INFO [2014-07-02 14:58:40,392] [Preprocessor.java:241] [main] Processing chromosome C1801 Processing chromosome C1801 INFO [2014-07-02 14:58:40,430] [Preprocessor.java:241] [main] Processing chromosome C18010 Processing chromosome C18010 INFO [2014-07-02 14:58:40,498] [Preprocessor.java:241] [main] Processing chromosome C18050 Processing chromosome C18050 INFO [2014-07-02 14:58:40,551] [Preprocessor.java:241] [main] Processing chromosome C18054 Processing chromosome C18054 INFO [2014-07-02 14:58:40,614] [Preprocessor.java:241] [main] Processing chromosome C18062 Processing chromosome C18062 INFO [2014-07-02 14:58:40,623] [Preprocessor.java:241] [main] Processing chromosome C18072 Processing chromosome C18072 INFO [2014-07-02 14:58:40,634] [Preprocessor.java:241] [main] Processing chromosome C18086 Processing chromosome C18086 INFO [2014-07-02 14:58:40,651] [Preprocessor.java:241] [main] Processing chromosome C181 Processing chromosome C181 INFO [2014-07-02 14:58:40,683] [Preprocessor.java:241] [main] Processing chromosome C18104 Processing chromosome C18104 INFO [2014-07-02 14:58:40,748] [Preprocessor.java:241] [main] Processing chromosome C18108 Processing chromosome C18108 INFO [2014-07-02 14:58:40,780] [Preprocessor.java:241] [main] Processing chromosome C18122 Processing chromosome C18122 INFO [2014-07-02 14:58:40,829] [Preprocessor.java:241] [main] Processing chromosome C18128 Processing chromosome C18128 INFO [2014-07-02 14:58:40,878] [Preprocessor.java:241] [main] Processing chromosome C18136 Processing chromosome C18136 INFO [2014-07-02 14:58:40,930] [Preprocessor.java:241] [main] Processing chromosome C18154 Processing chromosome C18154 INFO [2014-07-02 14:58:40,948] [Preprocessor.java:241] [main] Processing chromosome C18168 Processing chromosome C18168 INFO [2014-07-02 14:58:40,995] [Preprocessor.java:241] [main] Processing chromosome C18184 Processing chromosome C18184 INFO [2014-07-02 14:58:41,020] [Preprocessor.java:241] [main] Processing chromosome C18226 Processing chromosome C18226 INFO [2014-07-02 14:58:41,053] [Preprocessor.java:241] [main] Processing chromosome C18238 Processing chromosome C18238 INFO [2014-07-02 14:58:41,103] [Preprocessor.java:241] [main] Processing chromosome C18244 Processing chromosome C18244 INFO [2014-07-02 14:58:41,137] [Preprocessor.java:241] [main] Processing chromosome C18254 Processing chromosome C18254 INFO [2014-07-02 14:58:41,180] [Preprocessor.java:241] [main] Processing chromosome C18256 Processing chromosome C18256 INFO [2014-07-02 14:58:41,196] [Preprocessor.java:241] [main] Processing chromosome C18278 Processing chromosome C18278 INFO [2014-07-02 14:58:41,260] [Preprocessor.java:241] [main] Processing chromosome C18288 Processing chromosome C18288 INFO [2014-07-02 14:58:41,326] [Preprocessor.java:241] [main] Processing chromosome C18316 Processing chromosome C18316 INFO [2014-07-02 14:58:41,350] [Preprocessor.java:241] [main] Processing chromosome C1833 Processing chromosome C1833 INFO [2014-07-02 14:58:41,384] [Preprocessor.java:241] [main] Processing chromosome C18334 Processing chromosome C18334 INFO [2014-07-02 14:58:41,421] [Preprocessor.java:241] [main] Processing chromosome C18346 Processing chromosome C18346 INFO [2014-07-02 14:58:41,474] [Preprocessor.java:241] [main] Processing chromosome C18366 Processing chromosome C18366 INFO [2014-07-02 14:58:41,489] [Preprocessor.java:241] [main] Processing chromosome C18378 Processing chromosome C18378 INFO [2014-07-02 14:58:41,511] [Preprocessor.java:241] [main] Processing chromosome C18396 Processing chromosome C18396 INFO [2014-07-02 14:58:41,554] [Preprocessor.java:241] [main] Processing chromosome C18398 Processing chromosome C18398 INFO [2014-07-02 14:58:41,581] [Preprocessor.java:241] [main] Processing chromosome C18412 Processing chromosome C18412 INFO [2014-07-02 14:58:41,589] [Preprocessor.java:241] [main] Processing chromosome C18414 Processing chromosome C18414 INFO [2014-07-02 14:58:41,627] [Preprocessor.java:241] [main] Processing chromosome C18428 Processing chromosome C18428 INFO [2014-07-02 14:58:41,673] [Preprocessor.java:241] [main] Processing chromosome C1843 Processing chromosome C1843 INFO [2014-07-02 14:58:41,731] [Preprocessor.java:241] [main] Processing chromosome C18430 Processing chromosome C18430 INFO [2014-07-02 14:58:41,757] [Preprocessor.java:241] [main] Processing chromosome C18434 Processing chromosome C18434 INFO [2014-07-02 14:58:41,787] [Preprocessor.java:241] [main] Processing chromosome C18448 Processing chromosome C18448 INFO [2014-07-02 14:58:41,827] [Preprocessor.java:241] [main] Processing chromosome C18452 Processing chromosome C18452 INFO [2014-07-02 14:58:41,834] [Preprocessor.java:241] [main] Processing chromosome C18492 Processing chromosome C18492 INFO [2014-07-02 14:58:41,887] [Preprocessor.java:241] [main] Processing chromosome C18502 Processing chromosome C18502 INFO [2014-07-02 14:58:41,896] [Preprocessor.java:241] [main] Processing chromosome C18508 Processing chromosome C18508 INFO [2014-07-02 14:58:41,951] [Preprocessor.java:241] [main] Processing chromosome C18522 Processing chromosome C18522 INFO [2014-07-02 14:58:41,971] [Preprocessor.java:241] [main] Processing chromosome C18526 Processing chromosome C18526 INFO [2014-07-02 14:58:42,004] [Preprocessor.java:241] [main] Processing chromosome C18538 Processing chromosome C18538 INFO [2014-07-02 14:58:42,038] [Preprocessor.java:241] [main] Processing chromosome C18546 Processing chromosome C18546 INFO [2014-07-02 14:58:42,083] [Preprocessor.java:241] [main] Processing chromosome C18548 Processing chromosome C18548 INFO [2014-07-02 14:58:42,123] [Preprocessor.java:241] [main] Processing chromosome C18572 Processing chromosome C18572 INFO [2014-07-02 14:58:42,144] [Preprocessor.java:241] [main] Processing chromosome C18578 Processing chromosome C18578 INFO [2014-07-02 14:58:42,176] [Preprocessor.java:241] [main] Processing chromosome C18580 Processing chromosome C18580 INFO [2014-07-02 14:58:42,221] [Preprocessor.java:241] [main] Processing chromosome C18600 Processing chromosome C18600 INFO [2014-07-02 14:58:42,283] [Preprocessor.java:241] [main] Processing chromosome C18638 Processing chromosome C18638 INFO [2014-07-02 14:58:42,322] [Preprocessor.java:241] [main] Processing chromosome C18652 Processing chromosome C18652 INFO [2014-07-02 14:58:42,386] [Preprocessor.java:241] [main] Processing chromosome C18674 Processing chromosome C18674 INFO [2014-07-02 14:58:42,453] [Preprocessor.java:241] [main] Processing chromosome C18682 Processing chromosome C18682 INFO [2014-07-02 14:58:42,468] [Preprocessor.java:241] [main] Processing chromosome C18688 Processing chromosome C18688 INFO [2014-07-02 14:58:42,508] [Preprocessor.java:241] [main] Processing chromosome C18694 Processing chromosome C18694 INFO [2014-07-02 14:58:42,518] [Preprocessor.java:241] [main] Processing chromosome C18708 Processing chromosome C18708 INFO [2014-07-02 14:58:42,578] [Preprocessor.java:241] [main] Processing chromosome C18710 Processing chromosome C18710 INFO [2014-07-02 14:58:42,586] [Preprocessor.java:241] [main] Processing chromosome C18726 Processing chromosome C18726 INFO [2014-07-02 14:58:42,607] [Preprocessor.java:241] [main] Processing chromosome C18740 Processing chromosome C18740 INFO [2014-07-02 14:58:42,630] [Preprocessor.java:241] [main] Processing chromosome C18752 Processing chromosome C18752 INFO [2014-07-02 14:58:42,693] [Preprocessor.java:241] [main] Processing chromosome C18754 Processing chromosome C18754 INFO [2014-07-02 14:58:42,712] [Preprocessor.java:241] [main] Processing chromosome C18758 Processing chromosome C18758 INFO [2014-07-02 14:58:42,734] [Preprocessor.java:241] [main] Processing chromosome C18772 Processing chromosome C18772 INFO [2014-07-02 14:58:42,757] [Preprocessor.java:241] [main] Processing chromosome C18774 Processing chromosome C18774 INFO [2014-07-02 14:58:42,795] [Preprocessor.java:241] [main] Processing chromosome C18792 Processing chromosome C18792 INFO [2014-07-02 14:58:42,822] [Preprocessor.java:241] [main] Processing chromosome C18802 Processing chromosome C18802 INFO [2014-07-02 14:58:42,841] [Preprocessor.java:241] [main] Processing chromosome C18804 Processing chromosome C18804 INFO [2014-07-02 14:58:42,886] [Preprocessor.java:241] [main] Processing chromosome C18824 Processing chromosome C18824 INFO [2014-07-02 14:58:42,933] [Preprocessor.java:241] [main] Processing chromosome C18832 Processing chromosome C18832 INFO [2014-07-02 14:58:42,994] [Preprocessor.java:241] [main] Processing chromosome C18836 Processing chromosome C18836 INFO [2014-07-02 14:58:43,002] [Preprocessor.java:241] [main] Processing chromosome C18850 Processing chromosome C18850 INFO [2014-07-02 14:58:43,031] [Preprocessor.java:241] [main] Processing chromosome C18858 Processing chromosome C18858 INFO [2014-07-02 14:58:43,052] [Preprocessor.java:241] [main] Processing chromosome C18860 Processing chromosome C18860 INFO [2014-07-02 14:58:43,074] [Preprocessor.java:241] [main] Processing chromosome C18862 Processing chromosome C18862 INFO [2014-07-02 14:58:43,131] [Preprocessor.java:241] [main] Processing chromosome C18868 Processing chromosome C18868 INFO [2014-07-02 14:58:43,150] [Preprocessor.java:241] [main] Processing chromosome C1887 Processing chromosome C1887 INFO [2014-07-02 14:58:43,208] [Preprocessor.java:241] [main] Processing chromosome C18884 Processing chromosome C18884 INFO [2014-07-02 14:58:43,215] [Preprocessor.java:241] [main] Processing chromosome C18894 Processing chromosome C18894 INFO [2014-07-02 14:58:43,226] [Preprocessor.java:241] [main] Processing chromosome C18924 Processing chromosome C18924 INFO [2014-07-02 14:58:43,241] [Preprocessor.java:241] [main] Processing chromosome C18932 Processing chromosome C18932 INFO [2014-07-02 14:58:43,268] [Preprocessor.java:241] [main] Processing chromosome C18938 Processing chromosome C18938 INFO [2014-07-02 14:58:43,324] [Preprocessor.java:241] [main] Processing chromosome C18950 Processing chromosome C18950 INFO [2014-07-02 14:58:43,333] [Preprocessor.java:241] [main] Processing chromosome C18952 Processing chromosome C18952 INFO [2014-07-02 14:58:43,343] [Preprocessor.java:241] [main] Processing chromosome C18966 Processing chromosome C18966 INFO [2014-07-02 14:58:43,353] [Preprocessor.java:241] [main] Processing chromosome C18968 Processing chromosome C18968 INFO [2014-07-02 14:58:43,390] [Preprocessor.java:241] [main] Processing chromosome C18974 Processing chromosome C18974 INFO [2014-07-02 14:58:43,397] [Preprocessor.java:241] [main] Processing chromosome C18976 Processing chromosome C18976 INFO [2014-07-02 14:58:43,460] [Preprocessor.java:241] [main] Processing chromosome C18996 Processing chromosome C18996 INFO [2014-07-02 14:58:43,480] [Preprocessor.java:241] [main] Processing chromosome C18998 Processing chromosome C18998 INFO [2014-07-02 14:58:43,497] [Preprocessor.java:241] [main] Processing chromosome C19008 Processing chromosome C19008 INFO [2014-07-02 14:58:43,516] [Preprocessor.java:241] [main] Processing chromosome C19012 Processing chromosome C19012 INFO [2014-07-02 14:58:43,526] [Preprocessor.java:241] [main] Processing chromosome C19018 Processing chromosome C19018 INFO [2014-07-02 14:58:43,583] [Preprocessor.java:241] [main] Processing chromosome C19030 Processing chromosome C19030 INFO [2014-07-02 14:58:43,597] [Preprocessor.java:241] [main] Processing chromosome C19042 Processing chromosome C19042 INFO [2014-07-02 14:58:43,664] [Preprocessor.java:241] [main] Processing chromosome C19056 Processing chromosome C19056 INFO [2014-07-02 14:58:43,708] [Preprocessor.java:241] [main] Processing chromosome C19058 Processing chromosome C19058 INFO [2014-07-02 14:58:43,715] [Preprocessor.java:241] [main] Processing chromosome C19072 Processing chromosome C19072 INFO [2014-07-02 14:58:43,729] [Preprocessor.java:241] [main] Processing chromosome C19082 Processing chromosome C19082 INFO [2014-07-02 14:58:43,749] [Preprocessor.java:241] [main] Processing chromosome C19094 Processing chromosome C19094 INFO [2014-07-02 14:58:43,756] [Preprocessor.java:241] [main] Processing chromosome C19100 Processing chromosome C19100 INFO [2014-07-02 14:58:43,819] [Preprocessor.java:241] [main] Processing chromosome C19108 Processing chromosome C19108 INFO [2014-07-02 14:58:43,871] [Preprocessor.java:241] [main] Processing chromosome C19112 Processing chromosome C19112 INFO [2014-07-02 14:58:43,889] [Preprocessor.java:241] [main] Processing chromosome C19142 Processing chromosome C19142 INFO [2014-07-02 14:58:43,919] [Preprocessor.java:241] [main] Processing chromosome C19146 Processing chromosome C19146 INFO [2014-07-02 14:58:43,926] [Preprocessor.java:241] [main] Processing chromosome C19148 Processing chromosome C19148 INFO [2014-07-02 14:58:43,944] [Preprocessor.java:241] [main] Processing chromosome C19160 Processing chromosome C19160 INFO [2014-07-02 14:58:43,993] [Preprocessor.java:241] [main] Processing chromosome C19178 Processing chromosome C19178 INFO [2014-07-02 14:58:44,004] [Preprocessor.java:241] [main] Processing chromosome C19194 Processing chromosome C19194 INFO [2014-07-02 14:58:44,054] [Preprocessor.java:241] [main] Processing chromosome C19196 Processing chromosome C19196 INFO [2014-07-02 14:58:44,101] [Preprocessor.java:241] [main] Processing chromosome C19200 Processing chromosome C19200 INFO [2014-07-02 14:58:44,136] [Preprocessor.java:241] [main] Processing chromosome C19204 Processing chromosome C19204 INFO [2014-07-02 14:58:44,164] [Preprocessor.java:241] [main] Processing chromosome C19216 Processing chromosome C19216 INFO [2014-07-02 14:58:44,182] [Preprocessor.java:241] [main] Processing chromosome C19224 Processing chromosome C19224 INFO [2014-07-02 14:58:44,227] [Preprocessor.java:241] [main] Processing chromosome C19228 Processing chromosome C19228 INFO [2014-07-02 14:58:44,292] [Preprocessor.java:241] [main] Processing chromosome C19242 Processing chromosome C19242 INFO [2014-07-02 14:58:44,343] [Preprocessor.java:241] [main] Processing chromosome C19250 Processing chromosome C19250 INFO [2014-07-02 14:58:44,381] [Preprocessor.java:241] [main] Processing chromosome C19258 Processing chromosome C19258 INFO [2014-07-02 14:58:44,388] [Preprocessor.java:241] [main] Processing chromosome C19270 Processing chromosome C19270 INFO [2014-07-02 14:58:44,429] [Preprocessor.java:241] [main] Processing chromosome C19276 Processing chromosome C19276 INFO [2014-07-02 14:58:44,439] [Preprocessor.java:241] [main] Processing chromosome C19284 Processing chromosome C19284 INFO [2014-07-02 14:58:44,454] [Preprocessor.java:241] [main] Processing chromosome C19288 Processing chromosome C19288 INFO [2014-07-02 14:58:44,507] [Preprocessor.java:241] [main] Processing chromosome C19298 Processing chromosome C19298 INFO [2014-07-02 14:58:44,538] [Preprocessor.java:241] [main] Processing chromosome C19300 Processing chromosome C19300 INFO [2014-07-02 14:58:44,604] [Preprocessor.java:241] [main] Processing chromosome C19308 Processing chromosome C19308 INFO [2014-07-02 14:58:44,619] [Preprocessor.java:241] [main] Processing chromosome C19314 Processing chromosome C19314 INFO [2014-07-02 14:58:44,679] [Preprocessor.java:241] [main] Processing chromosome C19336 Processing chromosome C19336 INFO [2014-07-02 14:58:44,685] [Preprocessor.java:241] [main] Processing chromosome C19340 Processing chromosome C19340 INFO [2014-07-02 14:58:44,744] [Preprocessor.java:241] [main] Processing chromosome C19344 Processing chromosome C19344 INFO [2014-07-02 14:58:44,754] [Preprocessor.java:241] [main] Processing chromosome C19346 Processing chromosome C19346 INFO [2014-07-02 14:58:44,806] [Preprocessor.java:241] [main] Processing chromosome C19348 Processing chromosome C19348 INFO [2014-07-02 14:58:44,856] [Preprocessor.java:241] [main] Processing chromosome C19354 Processing chromosome C19354 INFO [2014-07-02 14:58:44,866] [Preprocessor.java:241] [main] Processing chromosome C19356 Processing chromosome C19356 INFO [2014-07-02 14:58:44,907] [Preprocessor.java:241] [main] Processing chromosome C19382 Processing chromosome C19382 INFO [2014-07-02 14:58:44,958] [Preprocessor.java:241] [main] Processing chromosome C19386 Processing chromosome C19386 INFO [2014-07-02 14:58:44,990] [Preprocessor.java:241] [main] Processing chromosome C19392 Processing chromosome C19392 INFO [2014-07-02 14:58:45,039] [Preprocessor.java:241] [main] Processing chromosome C19410 Processing chromosome C19410 INFO [2014-07-02 14:58:45,062] [Preprocessor.java:241] [main] Processing chromosome C19416 Processing chromosome C19416 INFO [2014-07-02 14:58:45,104] [Preprocessor.java:241] [main] Processing chromosome C19448 Processing chromosome C19448 INFO [2014-07-02 14:58:45,117] [Preprocessor.java:241] [main] Processing chromosome C19460 Processing chromosome C19460 INFO [2014-07-02 14:58:45,133] [Preprocessor.java:241] [main] Processing chromosome C19472 Processing chromosome C19472 INFO [2014-07-02 14:58:45,181] [Preprocessor.java:241] [main] Processing chromosome C19476 Processing chromosome C19476 INFO [2014-07-02 14:58:45,239] [Preprocessor.java:241] [main] Processing chromosome C19480 Processing chromosome C19480 INFO [2014-07-02 14:58:45,257] [Preprocessor.java:241] [main] Processing chromosome C19494 Processing chromosome C19494 INFO [2014-07-02 14:58:45,313] [Preprocessor.java:241] [main] Processing chromosome C19510 Processing chromosome C19510 INFO [2014-07-02 14:58:45,324] [Preprocessor.java:241] [main] Processing chromosome C19516 Processing chromosome C19516 INFO [2014-07-02 14:58:45,333] [Preprocessor.java:241] [main] Processing chromosome C19522 Processing chromosome C19522 INFO [2014-07-02 14:58:45,377] [Preprocessor.java:241] [main] Processing chromosome C19532 Processing chromosome C19532 INFO [2014-07-02 14:58:45,420] [Preprocessor.java:241] [main] Processing chromosome C19556 Processing chromosome C19556 INFO [2014-07-02 14:58:45,455] [Preprocessor.java:241] [main] Processing chromosome C19560 Processing chromosome C19560 INFO [2014-07-02 14:58:45,470] [Preprocessor.java:241] [main] Processing chromosome C19570 Processing chromosome C19570 INFO [2014-07-02 14:58:45,502] [Preprocessor.java:241] [main] Processing chromosome C19572 Processing chromosome C19572 INFO [2014-07-02 14:58:45,514] [Preprocessor.java:241] [main] Processing chromosome C19576 Processing chromosome C19576 INFO [2014-07-02 14:58:45,523] [Preprocessor.java:241] [main] Processing chromosome C19582 Processing chromosome C19582 INFO [2014-07-02 14:58:45,584] [Preprocessor.java:241] [main] Processing chromosome C19584 Processing chromosome C19584 INFO [2014-07-02 14:58:45,590] [Preprocessor.java:241] [main] Processing chromosome C19586 Processing chromosome C19586 INFO [2014-07-02 14:58:45,633] [Preprocessor.java:241] [main] Processing chromosome C19594 Processing chromosome C19594 INFO [2014-07-02 14:58:45,649] [Preprocessor.java:241] [main] Processing chromosome C19600 Processing chromosome C19600 INFO [2014-07-02 14:58:45,658] [Preprocessor.java:241] [main] Processing chromosome C19602 Processing chromosome C19602 INFO [2014-07-02 14:58:45,684] [Preprocessor.java:241] [main] Processing chromosome C19612 Processing chromosome C19612 INFO [2014-07-02 14:58:45,748] [Preprocessor.java:241] [main] Processing chromosome C19622 Processing chromosome C19622 INFO [2014-07-02 14:58:45,797] [Preprocessor.java:241] [main] Processing chromosome C19626 Processing chromosome C19626 INFO [2014-07-02 14:58:45,828] [Preprocessor.java:241] [main] Processing chromosome C19630 Processing chromosome C19630 INFO [2014-07-02 14:58:45,884] [Preprocessor.java:241] [main] Processing chromosome C19636 Processing chromosome C19636 INFO [2014-07-02 14:58:45,909] [Preprocessor.java:241] [main] Processing chromosome C19642 Processing chromosome C19642 INFO [2014-07-02 14:58:45,970] [Preprocessor.java:241] [main] Processing chromosome C19648 Processing chromosome C19648 INFO [2014-07-02 14:58:46,015] [Preprocessor.java:241] [main] Processing chromosome C19658 Processing chromosome C19658 INFO [2014-07-02 14:58:46,075] [Preprocessor.java:241] [main] Processing chromosome C19660 Processing chromosome C19660 INFO [2014-07-02 14:58:46,131] [Preprocessor.java:241] [main] Processing chromosome C19672 Processing chromosome C19672 INFO [2014-07-02 14:58:46,167] [Preprocessor.java:241] [main] Processing chromosome C19680 Processing chromosome C19680 INFO [2014-07-02 14:58:46,221] [Preprocessor.java:241] [main] Processing chromosome C19682 Processing chromosome C19682 INFO [2014-07-02 14:58:46,275] [Preprocessor.java:241] [main] Processing chromosome C19686 Processing chromosome C19686 INFO [2014-07-02 14:58:46,292] [Preprocessor.java:241] [main] Processing chromosome C19688 Processing chromosome C19688 INFO [2014-07-02 14:58:46,298] [Preprocessor.java:241] [main] Processing chromosome C19718 Processing chromosome C19718 INFO [2014-07-02 14:58:46,335] [Preprocessor.java:241] [main] Processing chromosome C19722 Processing chromosome C19722 INFO [2014-07-02 14:58:46,382] [Preprocessor.java:241] [main] Processing chromosome C19750 Processing chromosome C19750 INFO [2014-07-02 14:58:46,454] [Preprocessor.java:241] [main] Processing chromosome C19764 Processing chromosome C19764 INFO [2014-07-02 14:58:46,515] [Preprocessor.java:241] [main] Processing chromosome C19770 Processing chromosome C19770 INFO [2014-07-02 14:58:46,590] [Preprocessor.java:241] [main] Processing chromosome C19774 Processing chromosome C19774 INFO [2014-07-02 14:58:46,598] [Preprocessor.java:241] [main] Processing chromosome C19776 Processing chromosome C19776 INFO [2014-07-02 14:58:46,633] [Preprocessor.java:241] [main] Processing chromosome C19780 Processing chromosome C19780 INFO [2014-07-02 14:58:46,697] [Preprocessor.java:241] [main] Processing chromosome C19782 Processing chromosome C19782 INFO [2014-07-02 14:58:46,721] [Preprocessor.java:241] [main] Processing chromosome C19784 Processing chromosome C19784 INFO [2014-07-02 14:58:46,782] [Preprocessor.java:241] [main] Processing chromosome C19786 Processing chromosome C19786 INFO [2014-07-02 14:58:46,797] [Preprocessor.java:241] [main] Processing chromosome C19812 Processing chromosome C19812 INFO [2014-07-02 14:58:46,825] [Preprocessor.java:241] [main] Processing chromosome C19816 Processing chromosome C19816 INFO [2014-07-02 14:58:46,839] [Preprocessor.java:241] [main] Processing chromosome C19822 Processing chromosome C19822 INFO [2014-07-02 14:58:46,852] [Preprocessor.java:241] [main] Processing chromosome C19824 Processing chromosome C19824 INFO [2014-07-02 14:58:46,887] [Preprocessor.java:241] [main] Processing chromosome C19830 Processing chromosome C19830 INFO [2014-07-02 14:58:46,902] [Preprocessor.java:241] [main] Processing chromosome C19838 Processing chromosome C19838 INFO [2014-07-02 14:58:46,912] [Preprocessor.java:241] [main] Processing chromosome C19842 Processing chromosome C19842 INFO [2014-07-02 14:58:46,972] [Preprocessor.java:241] [main] Processing chromosome C19850 Processing chromosome C19850 INFO [2014-07-02 14:58:46,993] [Preprocessor.java:241] [main] Processing chromosome C19868 Processing chromosome C19868 INFO [2014-07-02 14:58:46,998] [Preprocessor.java:241] [main] Processing chromosome C19902 Processing chromosome C19902 INFO [2014-07-02 14:58:47,045] [Preprocessor.java:241] [main] Processing chromosome C19916 Processing chromosome C19916 INFO [2014-07-02 14:58:47,085] [Preprocessor.java:241] [main] Processing chromosome C19918 Processing chromosome C19918 INFO [2014-07-02 14:58:47,090] [Preprocessor.java:241] [main] Processing chromosome C19958 Processing chromosome C19958 INFO [2014-07-02 14:58:47,108] [Preprocessor.java:241] [main] Processing chromosome C19960 Processing chromosome C19960 INFO [2014-07-02 14:58:47,114] [Preprocessor.java:241] [main] Processing chromosome C19964 Processing chromosome C19964 INFO [2014-07-02 14:58:47,121] [Preprocessor.java:241] [main] Processing chromosome C19966 Processing chromosome C19966 INFO [2014-07-02 14:58:47,128] [Preprocessor.java:241] [main] Processing chromosome C19972 Processing chromosome C19972 INFO [2014-07-02 14:58:47,152] [Preprocessor.java:241] [main] Processing chromosome C19974 Processing chromosome C19974 INFO [2014-07-02 14:58:47,186] [Preprocessor.java:241] [main] Processing chromosome C19976 Processing chromosome C19976 INFO [2014-07-02 14:58:47,191] [Preprocessor.java:241] [main] Processing chromosome C19984 Processing chromosome C19984 INFO [2014-07-02 14:58:47,260] [Preprocessor.java:241] [main] Processing chromosome C19990 Processing chromosome C19990 INFO [2014-07-02 14:58:47,329] [Preprocessor.java:241] [main] Processing chromosome C19996 Processing chromosome C19996 INFO [2014-07-02 14:58:47,341] [Preprocessor.java:241] [main] Processing chromosome C20004 Processing chromosome C20004 INFO [2014-07-02 14:58:47,358] [Preprocessor.java:241] [main] Processing chromosome C20012 Processing chromosome C20012 INFO [2014-07-02 14:58:47,368] [Preprocessor.java:241] [main] Processing chromosome C20014 Processing chromosome C20014 INFO [2014-07-02 14:58:47,399] [Preprocessor.java:241] [main] Processing chromosome C20018 Processing chromosome C20018 INFO [2014-07-02 14:58:47,453] [Preprocessor.java:241] [main] Processing chromosome C20032 Processing chromosome C20032 INFO [2014-07-02 14:58:47,458] [Preprocessor.java:241] [main] Processing chromosome C2005 Processing chromosome C2005 INFO [2014-07-02 14:58:47,493] [Preprocessor.java:241] [main] Processing chromosome C20052 Processing chromosome C20052 INFO [2014-07-02 14:58:47,537] [Preprocessor.java:241] [main] Processing chromosome C20054 Processing chromosome C20054 INFO [2014-07-02 14:58:47,576] [Preprocessor.java:241] [main] Processing chromosome C20080 Processing chromosome C20080 INFO [2014-07-02 14:58:47,587] [Preprocessor.java:241] [main] Processing chromosome C20084 Processing chromosome C20084 INFO [2014-07-02 14:58:47,607] [Preprocessor.java:241] [main] Processing chromosome C20088 Processing chromosome C20088 INFO [2014-07-02 14:58:47,645] [Preprocessor.java:241] [main] Processing chromosome C20090 Processing chromosome C20090 INFO [2014-07-02 14:58:47,702] [Preprocessor.java:241] [main] Processing chromosome C20094 Processing chromosome C20094 INFO [2014-07-02 14:58:47,734] [Preprocessor.java:241] [main] Processing chromosome C20102 Processing chromosome C20102 INFO [2014-07-02 14:58:47,777] [Preprocessor.java:241] [main] Processing chromosome C20104 Processing chromosome C20104 INFO [2014-07-02 14:58:47,786] [Preprocessor.java:241] [main] Processing chromosome C20108 Processing chromosome C20108 INFO [2014-07-02 14:58:47,802] [Preprocessor.java:241] [main] Processing chromosome C20120 Processing chromosome C20120 INFO [2014-07-02 14:58:47,830] [Preprocessor.java:241] [main] Processing chromosome C2013 Processing chromosome C2013 INFO [2014-07-02 14:58:47,890] [Preprocessor.java:241] [main] Processing chromosome C20170 Processing chromosome C20170 INFO [2014-07-02 14:58:47,918] [Preprocessor.java:241] [main] Processing chromosome C20176 Processing chromosome C20176 INFO [2014-07-02 14:58:47,950] [Preprocessor.java:241] [main] Processing chromosome C20188 Processing chromosome C20188 INFO [2014-07-02 14:58:47,998] [Preprocessor.java:241] [main] Processing chromosome C20192 Processing chromosome C20192 INFO [2014-07-02 14:58:48,012] [Preprocessor.java:241] [main] Processing chromosome C20198 Processing chromosome C20198 INFO [2014-07-02 14:58:48,076] [Preprocessor.java:241] [main] Processing chromosome C20210 Processing chromosome C20210 INFO [2014-07-02 14:58:48,101] [Preprocessor.java:241] [main] Processing chromosome C20234 Processing chromosome C20234 INFO [2014-07-02 14:58:48,107] [Preprocessor.java:241] [main] Processing chromosome C20238 Processing chromosome C20238 INFO [2014-07-02 14:58:48,177] [Preprocessor.java:241] [main] Processing chromosome C20244 Processing chromosome C20244 INFO [2014-07-02 14:58:48,222] [Preprocessor.java:241] [main] Processing chromosome C20248 Processing chromosome C20248 INFO [2014-07-02 14:58:48,272] [Preprocessor.java:241] [main] Processing chromosome C20250 Processing chromosome C20250 INFO [2014-07-02 14:58:48,299] [Preprocessor.java:241] [main] Processing chromosome C20252 Processing chromosome C20252 INFO [2014-07-02 14:58:48,319] [Preprocessor.java:241] [main] Processing chromosome C20256 Processing chromosome C20256 INFO [2014-07-02 14:58:48,342] [Preprocessor.java:241] [main] Processing chromosome C20262 Processing chromosome C20262 INFO [2014-07-02 14:58:48,360] [Preprocessor.java:241] [main] Processing chromosome C20282 Processing chromosome C20282 INFO [2014-07-02 14:58:48,404] [Preprocessor.java:241] [main] Processing chromosome C20284 Processing chromosome C20284 INFO [2014-07-02 14:58:48,427] [Preprocessor.java:241] [main] Processing chromosome C20294 Processing chromosome C20294 INFO [2014-07-02 14:58:48,451] [Preprocessor.java:241] [main] Processing chromosome C20300 Processing chromosome C20300 INFO [2014-07-02 14:58:48,468] [Preprocessor.java:241] [main] Processing chromosome C20316 Processing chromosome C20316 INFO [2014-07-02 14:58:48,520] [Preprocessor.java:241] [main] Processing chromosome C20318 Processing chromosome C20318 INFO [2014-07-02 14:58:48,538] [Preprocessor.java:241] [main] Processing chromosome C20322 Processing chromosome C20322 INFO [2014-07-02 14:58:48,593] [Preprocessor.java:241] [main] Processing chromosome C20332 Processing chromosome C20332 INFO [2014-07-02 14:58:48,638] [Preprocessor.java:241] [main] Processing chromosome C20334 Processing chromosome C20334 INFO [2014-07-02 14:58:48,669] [Preprocessor.java:241] [main] Processing chromosome C20340 Processing chromosome C20340 INFO [2014-07-02 14:58:48,675] [Preprocessor.java:241] [main] Processing chromosome C20344 Processing chromosome C20344 INFO [2014-07-02 14:58:48,716] [Preprocessor.java:241] [main] Processing chromosome C20350 Processing chromosome C20350 INFO [2014-07-02 14:58:48,771] [Preprocessor.java:241] [main] Processing chromosome C20360 Processing chromosome C20360 INFO [2014-07-02 14:58:48,786] [Preprocessor.java:241] [main] Processing chromosome C20364 Processing chromosome C20364 INFO [2014-07-02 14:58:48,841] [Preprocessor.java:241] [main] Processing chromosome C20366 Processing chromosome C20366 INFO [2014-07-02 14:58:48,902] [Preprocessor.java:241] [main] Processing chromosome C20368 Processing chromosome C20368 INFO [2014-07-02 14:58:48,953] [Preprocessor.java:241] [main] Processing chromosome C20374 Processing chromosome C20374 INFO [2014-07-02 14:58:48,980] [Preprocessor.java:241] [main] Processing chromosome C20390 Processing chromosome C20390 INFO [2014-07-02 14:58:49,022] [Preprocessor.java:241] [main] Processing chromosome C20392 Processing chromosome C20392 INFO [2014-07-02 14:58:49,086] [Preprocessor.java:241] [main] Processing chromosome C20398 Processing chromosome C20398 INFO [2014-07-02 14:58:49,104] [Preprocessor.java:241] [main] Processing chromosome C20400 Processing chromosome C20400 INFO [2014-07-02 14:58:49,147] [Preprocessor.java:241] [main] Processing chromosome C20410 Processing chromosome C20410 INFO [2014-07-02 14:58:49,158] [Preprocessor.java:241] [main] Processing chromosome C20422 Processing chromosome C20422 INFO [2014-07-02 14:58:49,197] [Preprocessor.java:241] [main] Processing chromosome C20426 Processing chromosome C20426 INFO [2014-07-02 14:58:49,265] [Preprocessor.java:241] [main] Processing chromosome C20430 Processing chromosome C20430 INFO [2014-07-02 14:58:49,322] [Preprocessor.java:241] [main] Processing chromosome C20434 Processing chromosome C20434 INFO [2014-07-02 14:58:49,334] [Preprocessor.java:241] [main] Processing chromosome C20446 Processing chromosome C20446 INFO [2014-07-02 14:58:49,392] [Preprocessor.java:241] [main] Processing chromosome C20452 Processing chromosome C20452 INFO [2014-07-02 14:58:49,415] [Preprocessor.java:241] [main] Processing chromosome C20462 Processing chromosome C20462 INFO [2014-07-02 14:58:49,442] [Preprocessor.java:241] [main] Processing chromosome C20470 Processing chromosome C20470 INFO [2014-07-02 14:58:49,491] [Preprocessor.java:241] [main] Processing chromosome C20474 Processing chromosome C20474 INFO [2014-07-02 14:58:49,515] [Preprocessor.java:241] [main] Processing chromosome C20476 Processing chromosome C20476 INFO [2014-07-02 14:58:49,550] [Preprocessor.java:241] [main] Processing chromosome C20478 Processing chromosome C20478 INFO [2014-07-02 14:58:49,574] [Preprocessor.java:241] [main] Processing chromosome C20480 Processing chromosome C20480 INFO [2014-07-02 14:58:49,634] [Preprocessor.java:241] [main] Processing chromosome C20482 Processing chromosome C20482 INFO [2014-07-02 14:58:51,399] [Preprocessor.java:241] [main] Processing chromosome C20484 Processing chromosome C20484 INFO [2014-07-02 14:58:51,426] [Preprocessor.java:241] [main] Processing chromosome C20522 Processing chromosome C20522 INFO [2014-07-02 14:58:51,459] [Preprocessor.java:241] [main] Processing chromosome C20524 Processing chromosome C20524 INFO [2014-07-02 14:58:51,488] [Preprocessor.java:241] [main] Processing chromosome C20532 Processing chromosome C20532 INFO [2014-07-02 14:58:51,500] [Preprocessor.java:241] [main] Processing chromosome C20538 Processing chromosome C20538 INFO [2014-07-02 14:58:51,523] [Preprocessor.java:241] [main] Processing chromosome C20544 Processing chromosome C20544 INFO [2014-07-02 14:58:51,575] [Preprocessor.java:241] [main] Processing chromosome C20546 Processing chromosome C20546 INFO [2014-07-02 14:58:51,588] [Preprocessor.java:241] [main] Processing chromosome C20550 Processing chromosome C20550 INFO [2014-07-02 14:58:51,644] [Preprocessor.java:241] [main] Processing chromosome C20552 Processing chromosome C20552 INFO [2014-07-02 14:58:51,690] [Preprocessor.java:241] [main] Processing chromosome C20554 Processing chromosome C20554 INFO [2014-07-02 14:58:51,696] [Preprocessor.java:241] [main] Processing chromosome C20574 Processing chromosome C20574 INFO [2014-07-02 14:58:51,713] [Preprocessor.java:241] [main] Processing chromosome C20576 Processing chromosome C20576 INFO [2014-07-02 14:58:51,770] [Preprocessor.java:241] [main] Processing chromosome C20578 Processing chromosome C20578 INFO [2014-07-02 14:58:51,794] [Preprocessor.java:241] [main] Processing chromosome C20582 Processing chromosome C20582 INFO [2014-07-02 14:58:51,833] [Preprocessor.java:241] [main] Processing chromosome C20586 Processing chromosome C20586 INFO [2014-07-02 14:58:51,893] [Preprocessor.java:241] [main] Processing chromosome C20594 Processing chromosome C20594 INFO [2014-07-02 14:58:51,930] [Preprocessor.java:241] [main] Processing chromosome C20614 Processing chromosome C20614 INFO [2014-07-02 14:58:52,001] [Preprocessor.java:241] [main] Processing chromosome C20624 Processing chromosome C20624 INFO [2014-07-02 14:58:52,009] [Preprocessor.java:241] [main] Processing chromosome C20626 Processing chromosome C20626 INFO [2014-07-02 14:58:52,062] [Preprocessor.java:241] [main] Processing chromosome C20630 Processing chromosome C20630 INFO [2014-07-02 14:58:52,088] [Preprocessor.java:241] [main] Processing chromosome C20640 Processing chromosome C20640 INFO [2014-07-02 14:58:52,103] [Preprocessor.java:241] [main] Processing chromosome C20642 Processing chromosome C20642 INFO [2014-07-02 14:58:52,123] [Preprocessor.java:241] [main] Processing chromosome C20644 Processing chromosome C20644 INFO [2014-07-02 14:58:52,195] [Preprocessor.java:241] [main] Processing chromosome C20646 Processing chromosome C20646 INFO [2014-07-02 14:58:52,239] [Preprocessor.java:241] [main] Processing chromosome C20652 Processing chromosome C20652 INFO [2014-07-02 14:58:52,261] [Preprocessor.java:241] [main] Processing chromosome C20654 Processing chromosome C20654 INFO [2014-07-02 14:58:52,288] [Preprocessor.java:241] [main] Processing chromosome C20664 Processing chromosome C20664 INFO [2014-07-02 14:58:52,326] [Preprocessor.java:241] [main] Processing chromosome C2067 Processing chromosome C2067 INFO [2014-07-02 14:58:52,360] [Preprocessor.java:241] [main] Processing chromosome C20678 Processing chromosome C20678 INFO [2014-07-02 14:58:52,404] [Preprocessor.java:241] [main] Processing chromosome C20680 Processing chromosome C20680 INFO [2014-07-02 14:58:52,414] [Preprocessor.java:241] [main] Processing chromosome C20688 Processing chromosome C20688 INFO [2014-07-02 14:58:52,469] [Preprocessor.java:241] [main] Processing chromosome C20692 Processing chromosome C20692 INFO [2014-07-02 14:58:52,503] [Preprocessor.java:241] [main] Processing chromosome C20694 Processing chromosome C20694 INFO [2014-07-02 14:58:52,528] [Preprocessor.java:241] [main] Processing chromosome C20704 Processing chromosome C20704 INFO [2014-07-02 14:58:52,558] [Preprocessor.java:241] [main] Processing chromosome C2071 Processing chromosome C2071 INFO [2014-07-02 14:58:52,614] [Preprocessor.java:241] [main] Processing chromosome C20716 Processing chromosome C20716 INFO [2014-07-02 14:58:52,623] [Preprocessor.java:241] [main] Processing chromosome C20720 Processing chromosome C20720 INFO [2014-07-02 14:58:52,659] [Preprocessor.java:241] [main] Processing chromosome C20734 Processing chromosome C20734 INFO [2014-07-02 14:58:52,675] [Preprocessor.java:241] [main] Processing chromosome C20740 Processing chromosome C20740 INFO [2014-07-02 14:58:52,704] [Preprocessor.java:241] [main] Processing chromosome C20748 Processing chromosome C20748 INFO [2014-07-02 14:58:52,718] [Preprocessor.java:241] [main] Processing chromosome C20754 Processing chromosome C20754 INFO [2014-07-02 14:58:52,740] [Preprocessor.java:241] [main] Processing chromosome C20760 Processing chromosome C20760 INFO [2014-07-02 14:58:52,799] [Preprocessor.java:241] [main] Processing chromosome C20764 Processing chromosome C20764 INFO [2014-07-02 14:58:52,816] [Preprocessor.java:241] [main] Processing chromosome C20766 Processing chromosome C20766 INFO [2014-07-02 14:58:52,822] [Preprocessor.java:241] [main] Processing chromosome C20768 Processing chromosome C20768 INFO [2014-07-02 14:58:52,861] [Preprocessor.java:241] [main] Processing chromosome C20774 Processing chromosome C20774 INFO [2014-07-02 14:58:52,898] [Preprocessor.java:241] [main] Processing chromosome C20790 Processing chromosome C20790 INFO [2014-07-02 14:58:52,955] [Preprocessor.java:241] [main] Processing chromosome C20808 Processing chromosome C20808 INFO [2014-07-02 14:58:52,983] [Preprocessor.java:241] [main] Processing chromosome C20846 Processing chromosome C20846 INFO [2014-07-02 14:58:52,994] [Preprocessor.java:241] [main] Processing chromosome C20848 Processing chromosome C20848 INFO [2014-07-02 14:58:53,018] [Preprocessor.java:241] [main] Processing chromosome C20850 Processing chromosome C20850 INFO [2014-07-02 14:58:53,027] [Preprocessor.java:241] [main] Processing chromosome C20858 Processing chromosome C20858 INFO [2014-07-02 14:58:53,060] [Preprocessor.java:241] [main] Processing chromosome C20870 Processing chromosome C20870 INFO [2014-07-02 14:58:53,083] [Preprocessor.java:241] [main] Processing chromosome C20874 Processing chromosome C20874 INFO [2014-07-02 14:58:53,121] [Preprocessor.java:241] [main] Processing chromosome C20884 Processing chromosome C20884 INFO [2014-07-02 14:58:53,159] [Preprocessor.java:241] [main] Processing chromosome C20888 Processing chromosome C20888 INFO [2014-07-02 14:58:53,195] [Preprocessor.java:241] [main] Processing chromosome C20900 Processing chromosome C20900 INFO [2014-07-02 14:58:53,223] [Preprocessor.java:241] [main] Processing chromosome C20906 Processing chromosome C20906 INFO [2014-07-02 14:58:53,273] [Preprocessor.java:241] [main] Processing chromosome C20916 Processing chromosome C20916 INFO [2014-07-02 14:58:53,319] [Preprocessor.java:241] [main] Processing chromosome C20920 Processing chromosome C20920 INFO [2014-07-02 14:58:53,331] [Preprocessor.java:241] [main] Processing chromosome C20926 Processing chromosome C20926 INFO [2014-07-02 14:58:53,338] [Preprocessor.java:241] [main] Processing chromosome C20936 Processing chromosome C20936 INFO [2014-07-02 14:58:53,358] [Preprocessor.java:241] [main] Processing chromosome C20942 Processing chromosome C20942 INFO [2014-07-02 14:58:53,376] [Preprocessor.java:241] [main] Processing chromosome C2095 Processing chromosome C2095 INFO [2014-07-02 14:58:53,413] [Preprocessor.java:241] [main] Processing chromosome C20986 Processing chromosome C20986 INFO [2014-07-02 14:58:53,450] [Preprocessor.java:241] [main] Processing chromosome C21000 Processing chromosome C21000 INFO [2014-07-02 14:58:53,497] [Preprocessor.java:241] [main] Processing chromosome C21008 Processing chromosome C21008 INFO [2014-07-02 14:58:53,502] [Preprocessor.java:241] [main] Processing chromosome C21012 Processing chromosome C21012 INFO [2014-07-02 14:58:53,535] [Preprocessor.java:241] [main] Processing chromosome C21018 Processing chromosome C21018 INFO [2014-07-02 14:58:53,569] [Preprocessor.java:241] [main] Processing chromosome C21036 Processing chromosome C21036 INFO [2014-07-02 14:58:53,577] [Preprocessor.java:241] [main] Processing chromosome C21038 Processing chromosome C21038 INFO [2014-07-02 14:58:53,614] [Preprocessor.java:241] [main] Processing chromosome C21046 Processing chromosome C21046 INFO [2014-07-02 14:58:53,655] [Preprocessor.java:241] [main] Processing chromosome C21050 Processing chromosome C21050 INFO [2014-07-02 14:58:53,671] [Preprocessor.java:241] [main] Processing chromosome C21060 Processing chromosome C21060 INFO [2014-07-02 14:58:53,711] [Preprocessor.java:241] [main] Processing chromosome C21062 Processing chromosome C21062 INFO [2014-07-02 14:58:53,726] [Preprocessor.java:241] [main] Processing chromosome C21064 Processing chromosome C21064 INFO [2014-07-02 14:58:53,800] [Preprocessor.java:241] [main] Processing chromosome C21072 Processing chromosome C21072 INFO [2014-07-02 14:58:53,837] [Preprocessor.java:241] [main] Processing chromosome C21094 Processing chromosome C21094 INFO [2014-07-02 14:58:53,946] [Preprocessor.java:241] [main] Processing chromosome C21096 Processing chromosome C21096 INFO [2014-07-02 14:58:53,959] [Preprocessor.java:241] [main] Processing chromosome C21102 Processing chromosome C21102 INFO [2014-07-02 14:58:53,968] [Preprocessor.java:241] [main] Processing chromosome C21108 Processing chromosome C21108 INFO [2014-07-02 14:58:53,999] [Preprocessor.java:241] [main] Processing chromosome C21120 Processing chromosome C21120 INFO [2014-07-02 14:58:54,034] [Preprocessor.java:241] [main] Processing chromosome C21128 Processing chromosome C21128 INFO [2014-07-02 14:58:54,073] [Preprocessor.java:241] [main] Processing chromosome C21144 Processing chromosome C21144 INFO [2014-07-02 14:58:54,105] [Preprocessor.java:241] [main] Processing chromosome C21154 Processing chromosome C21154 INFO [2014-07-02 14:58:54,126] [Preprocessor.java:241] [main] Processing chromosome C21156 Processing chromosome C21156 INFO [2014-07-02 14:58:54,158] [Preprocessor.java:241] [main] Processing chromosome C21160 Processing chromosome C21160 INFO [2014-07-02 14:58:54,241] [Preprocessor.java:241] [main] Processing chromosome C21170 Processing chromosome C21170 INFO [2014-07-02 14:58:54,285] [Preprocessor.java:241] [main] Processing chromosome C21176 Processing chromosome C21176 INFO [2014-07-02 14:58:54,353] [Preprocessor.java:241] [main] Processing chromosome C21178 Processing chromosome C21178 INFO [2014-07-02 14:58:54,392] [Preprocessor.java:241] [main] Processing chromosome C21186 Processing chromosome C21186 INFO [2014-07-02 14:58:54,456] [Preprocessor.java:241] [main] Processing chromosome C21188 Processing chromosome C21188 INFO [2014-07-02 14:58:54,510] [Preprocessor.java:241] [main] Processing chromosome C21190 Processing chromosome C21190 INFO [2014-07-02 14:58:54,516] [Preprocessor.java:241] [main] Processing chromosome C21226 Processing chromosome C21226 INFO [2014-07-02 14:58:54,548] [Preprocessor.java:241] [main] Processing chromosome C21236 Processing chromosome C21236 INFO [2014-07-02 14:58:54,569] [Preprocessor.java:241] [main] Processing chromosome C21260 Processing chromosome C21260 INFO [2014-07-02 14:58:54,612] [Preprocessor.java:241] [main] Processing chromosome C21276 Processing chromosome C21276 INFO [2014-07-02 14:58:54,624] [Preprocessor.java:241] [main] Processing chromosome C21278 Processing chromosome C21278 INFO [2014-07-02 14:58:54,655] [Preprocessor.java:241] [main] Processing chromosome C21282 Processing chromosome C21282 INFO [2014-07-02 14:58:54,681] [Preprocessor.java:241] [main] Processing chromosome C21286 Processing chromosome C21286 INFO [2014-07-02 14:58:54,750] [Preprocessor.java:241] [main] Processing chromosome C21292 Processing chromosome C21292 INFO [2014-07-02 14:58:54,763] [Preprocessor.java:241] [main] Processing chromosome C21304 Processing chromosome C21304 INFO [2014-07-02 14:58:54,793] [Preprocessor.java:241] [main] Processing chromosome C21306 Processing chromosome C21306 INFO [2014-07-02 14:58:54,812] [Preprocessor.java:241] [main] Processing chromosome C21308 Processing chromosome C21308 INFO [2014-07-02 14:58:54,849] [Preprocessor.java:241] [main] Processing chromosome C21310 Processing chromosome C21310 INFO [2014-07-02 14:58:54,904] [Preprocessor.java:241] [main] Processing chromosome C21312 Processing chromosome C21312 INFO [2014-07-02 14:58:54,963] [Preprocessor.java:241] [main] Processing chromosome C21314 Processing chromosome C21314 INFO [2014-07-02 14:58:54,972] [Preprocessor.java:241] [main] Processing chromosome C21330 Processing chromosome C21330 INFO [2014-07-02 14:58:54,988] [Preprocessor.java:241] [main] Processing chromosome C21336 Processing chromosome C21336 INFO [2014-07-02 14:58:55,052] [Preprocessor.java:241] [main] Processing chromosome C21340 Processing chromosome C21340 INFO [2014-07-02 14:58:55,060] [Preprocessor.java:241] [main] Processing chromosome C21346 Processing chromosome C21346 INFO [2014-07-02 14:58:55,109] [Preprocessor.java:241] [main] Processing chromosome C21354 Processing chromosome C21354 INFO [2014-07-02 14:58:55,143] [Preprocessor.java:241] [main] Processing chromosome C21356 Processing chromosome C21356 INFO [2014-07-02 14:58:55,148] [Preprocessor.java:241] [main] Processing chromosome C21372 Processing chromosome C21372 INFO [2014-07-02 14:58:55,180] [Preprocessor.java:241] [main] Processing chromosome C21374 Processing chromosome C21374 INFO [2014-07-02 14:58:55,226] [Preprocessor.java:241] [main] Processing chromosome C21378 Processing chromosome C21378 INFO [2014-07-02 14:58:55,273] [Preprocessor.java:241] [main] Processing chromosome C21380 Processing chromosome C21380 INFO [2014-07-02 14:58:55,355] [Preprocessor.java:241] [main] Processing chromosome C21386 Processing chromosome C21386 INFO [2014-07-02 14:58:55,375] [Preprocessor.java:241] [main] Processing chromosome C21400 Processing chromosome C21400 INFO [2014-07-02 14:58:55,381] [Preprocessor.java:241] [main] Processing chromosome C21404 Processing chromosome C21404 INFO [2014-07-02 14:58:55,394] [Preprocessor.java:241] [main] Processing chromosome C2141 Processing chromosome C2141 INFO [2014-07-02 14:58:55,431] [Preprocessor.java:241] [main] Processing chromosome C21418 Processing chromosome C21418 INFO [2014-07-02 14:58:55,484] [Preprocessor.java:241] [main] Processing chromosome C21438 Processing chromosome C21438 INFO [2014-07-02 14:58:55,511] [Preprocessor.java:241] [main] Processing chromosome C21454 Processing chromosome C21454 INFO [2014-07-02 14:58:55,545] [Preprocessor.java:241] [main] Processing chromosome C21460 Processing chromosome C21460 INFO [2014-07-02 14:58:55,582] [Preprocessor.java:241] [main] Processing chromosome C21474 Processing chromosome C21474 INFO [2014-07-02 14:58:55,640] [Preprocessor.java:241] [main] Processing chromosome C21484 Processing chromosome C21484 INFO [2014-07-02 14:58:55,688] [Preprocessor.java:241] [main] Processing chromosome C21494 Processing chromosome C21494 INFO [2014-07-02 14:58:55,693] [Preprocessor.java:241] [main] Processing chromosome C21500 Processing chromosome C21500 INFO [2014-07-02 14:58:55,739] [Preprocessor.java:241] [main] Processing chromosome C21502 Processing chromosome C21502 INFO [2014-07-02 14:58:55,805] [Preprocessor.java:241] [main] Processing chromosome C21504 Processing chromosome C21504 INFO [2014-07-02 14:58:55,828] [Preprocessor.java:241] [main] Processing chromosome C21508 Processing chromosome C21508 INFO [2014-07-02 14:58:55,855] [Preprocessor.java:241] [main] Processing chromosome C21516 Processing chromosome C21516 INFO [2014-07-02 14:58:55,917] [Preprocessor.java:241] [main] Processing chromosome C21528 Processing chromosome C21528 INFO [2014-07-02 14:58:55,927] [Preprocessor.java:241] [main] Processing chromosome C21548 Processing chromosome C21548 INFO [2014-07-02 14:58:55,965] [Preprocessor.java:241] [main] Processing chromosome C21550 Processing chromosome C21550 INFO [2014-07-02 14:58:55,999] [Preprocessor.java:241] [main] Processing chromosome C21554 Processing chromosome C21554 INFO [2014-07-02 14:58:56,038] [Preprocessor.java:241] [main] Processing chromosome C21560 Processing chromosome C21560 INFO [2014-07-02 14:58:56,070] [Preprocessor.java:241] [main] Processing chromosome C21564 Processing chromosome C21564 INFO [2014-07-02 14:58:56,084] [Preprocessor.java:241] [main] Processing chromosome C21566 Processing chromosome C21566 INFO [2014-07-02 14:58:56,108] [Preprocessor.java:241] [main] Processing chromosome C21570 Processing chromosome C21570 INFO [2014-07-02 14:58:56,115] [Preprocessor.java:241] [main] Processing chromosome C21572 Processing chromosome C21572 INFO [2014-07-02 14:58:56,165] [Preprocessor.java:241] [main] Processing chromosome C21586 Processing chromosome C21586 INFO [2014-07-02 14:58:56,178] [Preprocessor.java:241] [main] Processing chromosome C21588 Processing chromosome C21588 INFO [2014-07-02 14:58:56,206] [Preprocessor.java:241] [main] Processing chromosome C21590 Processing chromosome C21590 INFO [2014-07-02 14:58:56,263] [Preprocessor.java:241] [main] Processing chromosome C21594 Processing chromosome C21594 INFO [2014-07-02 14:58:56,291] [Preprocessor.java:241] [main] Processing chromosome C21596 Processing chromosome C21596 INFO [2014-07-02 14:58:56,296] [Preprocessor.java:241] [main] Processing chromosome C21610 Processing chromosome C21610 INFO [2014-07-02 14:58:56,335] [Preprocessor.java:241] [main] Processing chromosome C21614 Processing chromosome C21614 INFO [2014-07-02 14:58:56,385] [Preprocessor.java:241] [main] Processing chromosome C21616 Processing chromosome C21616 INFO [2014-07-02 14:58:56,407] [Preprocessor.java:241] [main] Processing chromosome C21622 Processing chromosome C21622 INFO [2014-07-02 14:58:56,434] [Preprocessor.java:241] [main] Processing chromosome C21624 Processing chromosome C21624 INFO [2014-07-02 14:58:56,451] [Preprocessor.java:241] [main] Processing chromosome C21634 Processing chromosome C21634 INFO [2014-07-02 14:58:56,458] [Preprocessor.java:241] [main] Processing chromosome C21636 Processing chromosome C21636 INFO [2014-07-02 14:58:56,495] [Preprocessor.java:241] [main] Processing chromosome C21638 Processing chromosome C21638 INFO [2014-07-02 14:58:56,519] [Preprocessor.java:241] [main] Processing chromosome C21650 Processing chromosome C21650 INFO [2014-07-02 14:58:56,538] [Preprocessor.java:241] [main] Processing chromosome C21652 Processing chromosome C21652 INFO [2014-07-02 14:58:56,569] [Preprocessor.java:241] [main] Processing chromosome C21654 Processing chromosome C21654 INFO [2014-07-02 14:58:56,620] [Preprocessor.java:241] [main] Processing chromosome C21684 Processing chromosome C21684 INFO [2014-07-02 14:58:56,635] [Preprocessor.java:241] [main] Processing chromosome C21694 Processing chromosome C21694 INFO [2014-07-02 14:58:56,672] [Preprocessor.java:241] [main] Processing chromosome C21696 Processing chromosome C21696 INFO [2014-07-02 14:58:56,679] [Preprocessor.java:241] [main] Processing chromosome C21702 Processing chromosome C21702 INFO [2014-07-02 14:58:56,745] [Preprocessor.java:241] [main] Processing chromosome C21712 Processing chromosome C21712 INFO [2014-07-02 14:58:56,751] [Preprocessor.java:241] [main] Processing chromosome C21716 Processing chromosome C21716 INFO [2014-07-02 14:58:56,783] [Preprocessor.java:241] [main] Processing chromosome C21720 Processing chromosome C21720 INFO [2014-07-02 14:58:56,825] [Preprocessor.java:241] [main] Processing chromosome C21722 Processing chromosome C21722 INFO [2014-07-02 14:58:56,883] [Preprocessor.java:241] [main] Processing chromosome C21724 Processing chromosome C21724 INFO [2014-07-02 14:58:56,903] [Preprocessor.java:241] [main] Processing chromosome C21728 Processing chromosome C21728 INFO [2014-07-02 14:58:56,919] [Preprocessor.java:241] [main] Processing chromosome C21730 Processing chromosome C21730 INFO [2014-07-02 14:58:56,963] [Preprocessor.java:241] [main] Processing chromosome C21750 Processing chromosome C21750 INFO [2014-07-02 14:58:56,985] [Preprocessor.java:241] [main] Processing chromosome C21756 Processing chromosome C21756 INFO [2014-07-02 14:58:57,031] [Preprocessor.java:241] [main] Processing chromosome C21764 Processing chromosome C21764 INFO [2014-07-02 14:58:57,080] [Preprocessor.java:241] [main] Processing chromosome C21766 Processing chromosome C21766 INFO [2014-07-02 14:58:57,089] [Preprocessor.java:241] [main] Processing chromosome C21784 Processing chromosome C21784 INFO [2014-07-02 14:58:57,103] [Preprocessor.java:241] [main] Processing chromosome C21790 Processing chromosome C21790 INFO [2014-07-02 14:58:57,110] [Preprocessor.java:241] [main] Processing chromosome C21792 Processing chromosome C21792 INFO [2014-07-02 14:58:57,126] [Preprocessor.java:241] [main] Processing chromosome C21794 Processing chromosome C21794 INFO [2014-07-02 14:58:57,133] [Preprocessor.java:241] [main] Processing chromosome C21796 Processing chromosome C21796 INFO [2014-07-02 14:58:57,155] [Preprocessor.java:241] [main] Processing chromosome C21802 Processing chromosome C21802 INFO [2014-07-02 14:58:57,171] [Preprocessor.java:241] [main] Processing chromosome C21804 Processing chromosome C21804 INFO [2014-07-02 14:58:57,175] [Preprocessor.java:241] [main] Processing chromosome C21820 Processing chromosome C21820 INFO [2014-07-02 14:58:57,186] [Preprocessor.java:241] [main] Processing chromosome C21834 Processing chromosome C21834 INFO [2014-07-02 14:58:57,195] [Preprocessor.java:241] [main] Processing chromosome C21844 Processing chromosome C21844 INFO [2014-07-02 14:58:57,209] [Preprocessor.java:241] [main] Processing chromosome C21850 Processing chromosome C21850 INFO [2014-07-02 14:58:57,220] [Preprocessor.java:241] [main] Processing chromosome C21852 Processing chromosome C21852 INFO [2014-07-02 14:58:57,228] [Preprocessor.java:241] [main] Processing chromosome C21854 Processing chromosome C21854 INFO [2014-07-02 14:58:57,253] [Preprocessor.java:241] [main] Processing chromosome C21858 Processing chromosome C21858 INFO [2014-07-02 14:58:57,257] [Preprocessor.java:241] [main] Processing chromosome C21860 Processing chromosome C21860 INFO [2014-07-02 14:58:57,269] [Preprocessor.java:241] [main] Processing chromosome C21862 Processing chromosome C21862 INFO [2014-07-02 14:58:57,306] [Preprocessor.java:241] [main] Processing chromosome C21866 Processing chromosome C21866 INFO [2014-07-02 14:58:57,311] [Preprocessor.java:241] [main] Processing chromosome C21868 Processing chromosome C21868 INFO [2014-07-02 14:58:57,317] [Preprocessor.java:241] [main] Processing chromosome C21870 Processing chromosome C21870 INFO [2014-07-02 14:58:57,330] [Preprocessor.java:241] [main] Processing chromosome C21884 Processing chromosome C21884 INFO [2014-07-02 14:58:57,349] [Preprocessor.java:241] [main] Processing chromosome C21892 Processing chromosome C21892 INFO [2014-07-02 14:58:57,409] [Preprocessor.java:241] [main] Processing chromosome C21896 Processing chromosome C21896 INFO [2014-07-02 14:58:57,424] [Preprocessor.java:241] [main] Processing chromosome C21924 Processing chromosome C21924 INFO [2014-07-02 14:58:57,490] [Preprocessor.java:241] [main] Processing chromosome C21942 Processing chromosome C21942 INFO [2014-07-02 14:58:57,509] [Preprocessor.java:241] [main] Processing chromosome C21944 Processing chromosome C21944 INFO [2014-07-02 14:58:57,565] [Preprocessor.java:241] [main] Processing chromosome C21956 Processing chromosome C21956 INFO [2014-07-02 14:58:57,596] [Preprocessor.java:241] [main] Processing chromosome C21994 Processing chromosome C21994 INFO [2014-07-02 14:58:57,642] [Preprocessor.java:241] [main] Processing chromosome C22000 Processing chromosome C22000 INFO [2014-07-02 14:58:57,685] [Preprocessor.java:241] [main] Processing chromosome C2201 Processing chromosome C2201 INFO [2014-07-02 14:58:57,745] [Preprocessor.java:241] [main] Processing chromosome C22012 Processing chromosome C22012 INFO [2014-07-02 14:58:57,770] [Preprocessor.java:241] [main] Processing chromosome C22018 Processing chromosome C22018 INFO [2014-07-02 14:58:57,775] [Preprocessor.java:241] [main] Processing chromosome C22020 Processing chromosome C22020 INFO [2014-07-02 14:58:57,812] [Preprocessor.java:241] [main] Processing chromosome C22032 Processing chromosome C22032 INFO [2014-07-02 14:58:57,819] [Preprocessor.java:241] [main] Processing chromosome C22036 Processing chromosome C22036 INFO [2014-07-02 14:58:57,847] [Preprocessor.java:241] [main] Processing chromosome C22058 Processing chromosome C22058 INFO [2014-07-02 14:58:57,866] [Preprocessor.java:241] [main] Processing chromosome C22060 Processing chromosome C22060 INFO [2014-07-02 14:58:57,908] [Preprocessor.java:241] [main] Processing chromosome C22074 Processing chromosome C22074 INFO [2014-07-02 14:58:57,930] [Preprocessor.java:241] [main] Processing chromosome C22084 Processing chromosome C22084 INFO [2014-07-02 14:58:57,949] [Preprocessor.java:241] [main] Processing chromosome C22092 Processing chromosome C22092 INFO [2014-07-02 14:58:57,967] [Preprocessor.java:241] [main] Processing chromosome C22094 Processing chromosome C22094 INFO [2014-07-02 14:58:58,002] [Preprocessor.java:241] [main] Processing chromosome C22096 Processing chromosome C22096 INFO [2014-07-02 14:58:58,022] [Preprocessor.java:241] [main] Processing chromosome C22110 Processing chromosome C22110 INFO [2014-07-02 14:58:58,031] [Preprocessor.java:241] [main] Processing chromosome C22112 Processing chromosome C22112 INFO [2014-07-02 14:58:58,089] [Preprocessor.java:241] [main] Processing chromosome C22114 Processing chromosome C22114 INFO [2014-07-02 14:58:58,108] [Preprocessor.java:241] [main] Processing chromosome C22120 Processing chromosome C22120 INFO [2014-07-02 14:58:58,134] [Preprocessor.java:241] [main] Processing chromosome C22124 Processing chromosome C22124 INFO [2014-07-02 14:58:58,139] [Preprocessor.java:241] [main] Processing chromosome C22130 Processing chromosome C22130 INFO [2014-07-02 14:58:58,168] [Preprocessor.java:241] [main] Processing chromosome C22136 Processing chromosome C22136 INFO [2014-07-02 14:58:58,195] [Preprocessor.java:241] [main] Processing chromosome C22138 Processing chromosome C22138 INFO [2014-07-02 14:58:58,201] [Preprocessor.java:241] [main] Processing chromosome C22140 Processing chromosome C22140 INFO [2014-07-02 14:58:58,233] [Preprocessor.java:241] [main] Processing chromosome C22142 Processing chromosome C22142 INFO [2014-07-02 14:59:03,568] [Preprocessor.java:241] [main] Processing chromosome C22146 Processing chromosome C22146 INFO [2014-07-02 14:59:03,595] [Preprocessor.java:241] [main] Processing chromosome C22164 Processing chromosome C22164 INFO [2014-07-02 14:59:03,625] [Preprocessor.java:241] [main] Processing chromosome C22168 Processing chromosome C22168 INFO [2014-07-02 14:59:03,653] [Preprocessor.java:241] [main] Processing chromosome C22174 Processing chromosome C22174 INFO [2014-07-02 14:59:03,699] [Preprocessor.java:241] [main] Processing chromosome C22192 Processing chromosome C22192 INFO [2014-07-02 14:59:03,751] [Preprocessor.java:241] [main] Processing chromosome C22194 Processing chromosome C22194 INFO [2014-07-02 14:59:03,802] [Preprocessor.java:241] [main] Processing chromosome C22202 Processing chromosome C22202 INFO [2014-07-02 14:59:03,836] [Preprocessor.java:241] [main] Processing chromosome C22208 Processing chromosome C22208 INFO [2014-07-02 14:59:03,846] [Preprocessor.java:241] [main] Processing chromosome C22220 Processing chromosome C22220 INFO [2014-07-02 14:59:03,874] [Preprocessor.java:241] [main] Processing chromosome C22232 Processing chromosome C22232 INFO [2014-07-02 14:59:03,901] [Preprocessor.java:241] [main] Processing chromosome C22236 Processing chromosome C22236 INFO [2014-07-02 14:59:03,939] [Preprocessor.java:241] [main] Processing chromosome C22242 Processing chromosome C22242 INFO [2014-07-02 14:59:03,973] [Preprocessor.java:241] [main] Processing chromosome C22248 Processing chromosome C22248 INFO [2014-07-02 14:59:04,020] [Preprocessor.java:241] [main] Processing chromosome C22264 Processing chromosome C22264 INFO [2014-07-02 14:59:04,067] [Preprocessor.java:241] [main] Processing chromosome C22268 Processing chromosome C22268 INFO [2014-07-02 14:59:04,114] [Preprocessor.java:241] [main] Processing chromosome C22274 Processing chromosome C22274 INFO [2014-07-02 14:59:04,144] [Preprocessor.java:241] [main] Processing chromosome C22276 Processing chromosome C22276 INFO [2014-07-02 14:59:04,156] [Preprocessor.java:241] [main] Processing chromosome C22280 Processing chromosome C22280 INFO [2014-07-02 14:59:04,206] [Preprocessor.java:241] [main] Processing chromosome C22284 Processing chromosome C22284 INFO [2014-07-02 14:59:04,219] [Preprocessor.java:241] [main] Processing chromosome C22288 Processing chromosome C22288 INFO [2014-07-02 14:59:04,229] [Preprocessor.java:241] [main] Processing chromosome C22290 Processing chromosome C22290 INFO [2014-07-02 14:59:04,269] [Preprocessor.java:241] [main] Processing chromosome C22294 Processing chromosome C22294 INFO [2014-07-02 14:59:04,321] [Preprocessor.java:241] [main] Processing chromosome C22298 Processing chromosome C22298 INFO [2014-07-02 14:59:04,335] [Preprocessor.java:241] [main] Processing chromosome C22302 Processing chromosome C22302 INFO [2014-07-02 14:59:04,375] [Preprocessor.java:241] [main] Processing chromosome C22304 Processing chromosome C22304 INFO [2014-07-02 14:59:04,383] [Preprocessor.java:241] [main] Processing chromosome C22310 Processing chromosome C22310 INFO [2014-07-02 14:59:04,406] [Preprocessor.java:241] [main] Processing chromosome C22322 Processing chromosome C22322 INFO [2014-07-02 14:59:04,418] [Preprocessor.java:241] [main] Processing chromosome C22324 Processing chromosome C22324 INFO [2014-07-02 14:59:04,456] [Preprocessor.java:241] [main] Processing chromosome C22326 Processing chromosome C22326 INFO [2014-07-02 14:59:04,478] [Preprocessor.java:241] [main] Processing chromosome C22340 Processing chromosome C22340 INFO [2014-07-02 14:59:04,532] [Preprocessor.java:241] [main] Processing chromosome C22344 Processing chromosome C22344 INFO [2014-07-02 14:59:04,560] [Preprocessor.java:241] [main] Processing chromosome C22346 Processing chromosome C22346 INFO [2014-07-02 14:59:04,586] [Preprocessor.java:241] [main] Processing chromosome C22360 Processing chromosome C22360 INFO [2014-07-02 14:59:04,603] [Preprocessor.java:241] [main] Processing chromosome C22368 Processing chromosome C22368 INFO [2014-07-02 14:59:04,670] [Preprocessor.java:241] [main] Processing chromosome C22382 Processing chromosome C22382 INFO [2014-07-02 14:59:04,685] [Preprocessor.java:241] [main] Processing chromosome C22388 Processing chromosome C22388 INFO [2014-07-02 14:59:04,717] [Preprocessor.java:241] [main] Processing chromosome C22390 Processing chromosome C22390 INFO [2014-07-02 14:59:04,741] [Preprocessor.java:241] [main] Processing chromosome C22400 Processing chromosome C22400 INFO [2014-07-02 14:59:04,765] [Preprocessor.java:241] [main] Processing chromosome C22402 Processing chromosome C22402 INFO [2014-07-02 14:59:04,773] [Preprocessor.java:241] [main] Processing chromosome C22406 Processing chromosome C22406 INFO [2014-07-02 14:59:04,839] [Preprocessor.java:241] [main] Processing chromosome C22414 Processing chromosome C22414 INFO [2014-07-02 14:59:04,848] [Preprocessor.java:241] [main] Processing chromosome C22422 Processing chromosome C22422 INFO [2014-07-02 14:59:04,918] [Preprocessor.java:241] [main] Processing chromosome C22424 Processing chromosome C22424 INFO [2014-07-02 14:59:04,933] [Preprocessor.java:241] [main] Processing chromosome C22440 Processing chromosome C22440 INFO [2014-07-02 14:59:04,961] [Preprocessor.java:241] [main] Processing chromosome C22444 Processing chromosome C22444 INFO [2014-07-02 14:59:04,973] [Preprocessor.java:241] [main] Processing chromosome C22452 Processing chromosome C22452 INFO [2014-07-02 14:59:05,005] [Preprocessor.java:241] [main] Processing chromosome C22456 Processing chromosome C22456 INFO [2014-07-02 14:59:05,045] [Preprocessor.java:241] [main] Processing chromosome C22458 Processing chromosome C22458 INFO [2014-07-02 14:59:05,117] [Preprocessor.java:241] [main] Processing chromosome C22470 Processing chromosome C22470 INFO [2014-07-02 14:59:05,162] [Preprocessor.java:241] [main] Processing chromosome C22484 Processing chromosome C22484 INFO [2014-07-02 14:59:05,171] [Preprocessor.java:241] [main] Processing chromosome C22492 Processing chromosome C22492 INFO [2014-07-02 14:59:05,192] [Preprocessor.java:241] [main] Processing chromosome C22494 Processing chromosome C22494 INFO [2014-07-02 14:59:08,322] [Preprocessor.java:241] [main] Processing chromosome C22500 Processing chromosome C22500 INFO [2014-07-02 14:59:08,332] [Preprocessor.java:241] [main] Processing chromosome C22504 Processing chromosome C22504 INFO [2014-07-02 14:59:08,341] [Preprocessor.java:241] [main] Processing chromosome C2251 Processing chromosome C2251 INFO [2014-07-02 14:59:08,418] [Preprocessor.java:241] [main] Processing chromosome C22514 Processing chromosome C22514 INFO [2014-07-02 14:59:08,462] [Preprocessor.java:241] [main] Processing chromosome C22516 Processing chromosome C22516 INFO [2014-07-02 14:59:08,501] [Preprocessor.java:241] [main] Processing chromosome C22518 Processing chromosome C22518 INFO [2014-07-02 14:59:08,567] [Preprocessor.java:241] [main] Processing chromosome C22520 Processing chromosome C22520 INFO [2014-07-02 14:59:08,578] [Preprocessor.java:241] [main] Processing chromosome C22524 Processing chromosome C22524 INFO [2014-07-02 14:59:08,623] [Preprocessor.java:241] [main] Processing chromosome C22536 Processing chromosome C22536 INFO [2014-07-02 14:59:08,649] [Preprocessor.java:241] [main] Processing chromosome C22538 Processing chromosome C22538 INFO [2014-07-02 14:59:08,691] [Preprocessor.java:241] [main] Processing chromosome C22542 Processing chromosome C22542 INFO [2014-07-02 14:59:08,709] [Preprocessor.java:241] [main] Processing chromosome C22546 Processing chromosome C22546 INFO [2014-07-02 14:59:08,734] [Preprocessor.java:241] [main] Processing chromosome C2255 Processing chromosome C2255 INFO [2014-07-02 14:59:08,773] [Preprocessor.java:241] [main] Processing chromosome C22552 Processing chromosome C22552 INFO [2014-07-02 14:59:08,808] [Preprocessor.java:241] [main] Processing chromosome C22558 Processing chromosome C22558 INFO [2014-07-02 14:59:08,831] [Preprocessor.java:241] [main] Processing chromosome C22566 Processing chromosome C22566 INFO [2014-07-02 14:59:08,856] [Preprocessor.java:241] [main] Processing chromosome C22570 Processing chromosome C22570 INFO [2014-07-02 14:59:08,867] [Preprocessor.java:241] [main] Processing chromosome C22584 Processing chromosome C22584 INFO [2014-07-02 14:59:08,908] [Preprocessor.java:241] [main] Processing chromosome C22586 Processing chromosome C22586 INFO [2014-07-02 14:59:08,912] [Preprocessor.java:241] [main] Processing chromosome C22594 Processing chromosome C22594 INFO [2014-07-02 14:59:08,962] [Preprocessor.java:241] [main] Processing chromosome C22598 Processing chromosome C22598 INFO [2014-07-02 14:59:09,045] [Preprocessor.java:241] [main] Processing chromosome C22600 Processing chromosome C22600 INFO [2014-07-02 14:59:09,072] [Preprocessor.java:241] [main] Processing chromosome C22602 Processing chromosome C22602 INFO [2014-07-02 14:59:09,089] [Preprocessor.java:241] [main] Processing chromosome C22604 Processing chromosome C22604 INFO [2014-07-02 14:59:09,093] [Preprocessor.java:241] [main] Processing chromosome C22610 Processing chromosome C22610 INFO [2014-07-02 14:59:09,136] [Preprocessor.java:241] [main] Processing chromosome C22614 Processing chromosome C22614 INFO [2014-07-02 14:59:09,171] [Preprocessor.java:241] [main] Processing chromosome C22624 Processing chromosome C22624 INFO [2014-07-02 14:59:09,201] [Preprocessor.java:241] [main] Processing chromosome C22626 Processing chromosome C22626 INFO [2014-07-02 14:59:09,237] [Preprocessor.java:241] [main] Processing chromosome C22628 Processing chromosome C22628 INFO [2014-07-02 14:59:09,301] [Preprocessor.java:241] [main] Processing chromosome C2263 Processing chromosome C2263 INFO [2014-07-02 14:59:09,337] [Preprocessor.java:241] [main] Processing chromosome C22632 Processing chromosome C22632 INFO [2014-07-02 14:59:09,365] [Preprocessor.java:241] [main] Processing chromosome C22636 Processing chromosome C22636 INFO [2014-07-02 14:59:09,397] [Preprocessor.java:241] [main] Processing chromosome C22638 Processing chromosome C22638 INFO [2014-07-02 14:59:09,434] [Preprocessor.java:241] [main] Processing chromosome C22644 Processing chromosome C22644 INFO [2014-07-02 14:59:09,447] [Preprocessor.java:241] [main] Processing chromosome C22648 Processing chromosome C22648 INFO [2014-07-02 14:59:09,499] [Preprocessor.java:241] [main] Processing chromosome C22662 Processing chromosome C22662 INFO [2014-07-02 14:59:09,525] [Preprocessor.java:241] [main] Processing chromosome C22666 Processing chromosome C22666 INFO [2014-07-02 14:59:09,591] [Preprocessor.java:241] [main] Processing chromosome C22668 Processing chromosome C22668 INFO [2014-07-02 14:59:09,605] [Preprocessor.java:241] [main] Processing chromosome C22676 Processing chromosome C22676 INFO [2014-07-02 14:59:09,636] [Preprocessor.java:241] [main] Processing chromosome C22678 Processing chromosome C22678 INFO [2014-07-02 14:59:09,659] [Preprocessor.java:241] [main] Processing chromosome C22682 Processing chromosome C22682 INFO [2014-07-02 14:59:09,678] [Preprocessor.java:241] [main] Processing chromosome C22704 Processing chromosome C22704 INFO [2014-07-02 14:59:09,691] [Preprocessor.java:241] [main] Processing chromosome C22708 Processing chromosome C22708 INFO [2014-07-02 14:59:09,771] [Preprocessor.java:241] [main] Processing chromosome C22712 Processing chromosome C22712 INFO [2014-07-02 14:59:09,820] [Preprocessor.java:241] [main] Processing chromosome C22714 Processing chromosome C22714 INFO [2014-07-02 14:59:09,834] [Preprocessor.java:241] [main] Processing chromosome C22722 Processing chromosome C22722 INFO [2014-07-02 14:59:09,851] [Preprocessor.java:241] [main] Processing chromosome C22728 Processing chromosome C22728 INFO [2014-07-02 14:59:09,855] [Preprocessor.java:241] [main] Processing chromosome C22732 Processing chromosome C22732 INFO [2014-07-02 14:59:09,874] [Preprocessor.java:241] [main] Processing chromosome C22734 Processing chromosome C22734 INFO [2014-07-02 14:59:09,887] [Preprocessor.java:241] [main] Processing chromosome C22748 Processing chromosome C22748 INFO [2014-07-02 14:59:10,863] [Preprocessor.java:241] [main] Processing chromosome C22750 Processing chromosome C22750 INFO [2014-07-02 14:59:10,887] [Preprocessor.java:241] [main] Processing chromosome C22752 Processing chromosome C22752 INFO [2014-07-02 14:59:10,892] [Preprocessor.java:241] [main] Processing chromosome C22754 Processing chromosome C22754 INFO [2014-07-02 14:59:10,911] [Preprocessor.java:241] [main] Processing chromosome C22758 Processing chromosome C22758 INFO [2014-07-02 14:59:10,919] [Preprocessor.java:241] [main] Processing chromosome C2277 Processing chromosome C2277 INFO [2014-07-02 14:59:10,977] [Preprocessor.java:241] [main] Processing chromosome C22772 Processing chromosome C22772 INFO [2014-07-02 14:59:10,995] [Preprocessor.java:241] [main] Processing chromosome C22778 Processing chromosome C22778 INFO [2014-07-02 14:59:11,040] [Preprocessor.java:241] [main] Processing chromosome C22784 Processing chromosome C22784 INFO [2014-07-02 14:59:11,079] [Preprocessor.java:241] [main] Processing chromosome C22790 Processing chromosome C22790 INFO [2014-07-02 14:59:11,132] [Preprocessor.java:241] [main] Processing chromosome C22794 Processing chromosome C22794 INFO [2014-07-02 14:59:11,141] [Preprocessor.java:241] [main] Processing chromosome C22798 Processing chromosome C22798 INFO [2014-07-02 14:59:11,144] [Preprocessor.java:241] [main] Processing chromosome C22800 Processing chromosome C22800 INFO [2014-07-02 14:59:11,167] [Preprocessor.java:241] [main] Processing chromosome C22802 Processing chromosome C22802 INFO [2014-07-02 14:59:11,232] [Preprocessor.java:241] [main] Processing chromosome C22804 Processing chromosome C22804 INFO [2014-07-02 14:59:11,276] [Preprocessor.java:241] [main] Processing chromosome C22810 Processing chromosome C22810 INFO [2014-07-02 14:59:11,323] [Preprocessor.java:241] [main] Processing chromosome C22820 Processing chromosome C22820 INFO [2014-07-02 14:59:11,335] [Preprocessor.java:241] [main] Processing chromosome C22822 Processing chromosome C22822 INFO [2014-07-02 14:59:11,370] [Preprocessor.java:241] [main] Processing chromosome C22824 Processing chromosome C22824 INFO [2014-07-02 14:59:11,406] [Preprocessor.java:241] [main] Processing chromosome C22834 Processing chromosome C22834 INFO [2014-07-02 14:59:11,410] [Preprocessor.java:241] [main] Processing chromosome C22842 Processing chromosome C22842 INFO [2014-07-02 14:59:11,464] [Preprocessor.java:241] [main] Processing chromosome C22844 Processing chromosome C22844 INFO [2014-07-02 14:59:11,503] [Preprocessor.java:241] [main] Processing chromosome C22856 Processing chromosome C22856 INFO [2014-07-02 14:59:11,518] [Preprocessor.java:241] [main] Processing chromosome C22862 Processing chromosome C22862 INFO [2014-07-02 14:59:11,551] [Preprocessor.java:241] [main] Processing chromosome C22866 Processing chromosome C22866 INFO [2014-07-02 14:59:11,583] [Preprocessor.java:241] [main] Processing chromosome C22868 Processing chromosome C22868 INFO [2014-07-02 14:59:11,595] [Preprocessor.java:241] [main] Processing chromosome C22870 Processing chromosome C22870 INFO [2014-07-02 14:59:11,669] [Preprocessor.java:241] [main] Processing chromosome C22880 Processing chromosome C22880 INFO [2014-07-02 14:59:11,673] [Preprocessor.java:241] [main] Processing chromosome C22888 Processing chromosome C22888 INFO [2014-07-02 14:59:11,750] [Preprocessor.java:241] [main] Processing chromosome C22892 Processing chromosome C22892 INFO [2014-07-02 14:59:11,799] [Preprocessor.java:241] [main] Processing chromosome C22894 Processing chromosome C22894 INFO [2014-07-02 14:59:11,803] [Preprocessor.java:241] [main] Processing chromosome C22902 Processing chromosome C22902 INFO [2014-07-02 14:59:11,829] [Preprocessor.java:241] [main] Processing chromosome C22904 Processing chromosome C22904 INFO [2014-07-02 14:59:11,843] [Preprocessor.java:241] [main] Processing chromosome C22910 Processing chromosome C22910 INFO [2014-07-02 14:59:11,850] [Preprocessor.java:241] [main] Processing chromosome C22926 Processing chromosome C22926 INFO [2014-07-02 14:59:11,911] [Preprocessor.java:241] [main] Processing chromosome C22928 Processing chromosome C22928 INFO [2014-07-02 14:59:11,940] [Preprocessor.java:241] [main] Processing chromosome C22940 Processing chromosome C22940 INFO [2014-07-02 14:59:11,970] [Preprocessor.java:241] [main] Processing chromosome C22948 Processing chromosome C22948 INFO [2014-07-02 14:59:12,049] [Preprocessor.java:241] [main] Processing chromosome C22958 Processing chromosome C22958 INFO [2014-07-02 14:59:12,082] [Preprocessor.java:241] [main] Processing chromosome C22968 Processing chromosome C22968 INFO [2014-07-02 14:59:12,105] [Preprocessor.java:241] [main] Processing chromosome C22972 Processing chromosome C22972 INFO [2014-07-02 14:59:12,166] [Preprocessor.java:241] [main] Processing chromosome C22978 Processing chromosome C22978 INFO [2014-07-02 14:59:12,212] [Preprocessor.java:241] [main] Processing chromosome C22980 Processing chromosome C22980 INFO [2014-07-02 14:59:12,242] [Preprocessor.java:241] [main] Processing chromosome C22982 Processing chromosome C22982 INFO [2014-07-02 14:59:12,301] [Preprocessor.java:241] [main] Processing chromosome C22990 Processing chromosome C22990 INFO [2014-07-02 14:59:12,357] [Preprocessor.java:241] [main] Processing chromosome C22994 Processing chromosome C22994 INFO [2014-07-02 14:59:12,383] [Preprocessor.java:241] [main] Processing chromosome C22996 Processing chromosome C22996 INFO [2014-07-02 14:59:12,466] [Preprocessor.java:241] [main] Processing chromosome C22998 Processing chromosome C22998 INFO [2014-07-02 14:59:12,487] [Preprocessor.java:241] [main] Processing chromosome C23000 Processing chromosome C23000 INFO [2014-07-02 14:59:12,517] [Preprocessor.java:241] [main] Processing chromosome C23010 Processing chromosome C23010 INFO [2014-07-02 14:59:12,549] [Preprocessor.java:241] [main] Processing chromosome C23014 Processing chromosome C23014 INFO [2014-07-02 14:59:12,558] [Preprocessor.java:241] [main] Processing chromosome C23016 Processing chromosome C23016 INFO [2014-07-02 14:59:12,597] [Preprocessor.java:241] [main] Processing chromosome C23024 Processing chromosome C23024 INFO [2014-07-02 14:59:12,653] [Preprocessor.java:241] [main] Processing chromosome C23030 Processing chromosome C23030 INFO [2014-07-02 14:59:12,692] [Preprocessor.java:241] [main] Processing chromosome C23036 Processing chromosome C23036 INFO [2014-07-02 14:59:12,726] [Preprocessor.java:241] [main] Processing chromosome C23040 Processing chromosome C23040 INFO [2014-07-02 14:59:12,760] [Preprocessor.java:241] [main] Processing chromosome C23048 Processing chromosome C23048 INFO [2014-07-02 14:59:12,787] [Preprocessor.java:241] [main] Processing chromosome C23080 Processing chromosome C23080 INFO [2014-07-02 14:59:12,839] [Preprocessor.java:241] [main] Processing chromosome C23092 Processing chromosome C23092 INFO [2014-07-02 14:59:12,857] [Preprocessor.java:241] [main] Processing chromosome C23096 Processing chromosome C23096 INFO [2014-07-02 14:59:12,891] [Preprocessor.java:241] [main] Processing chromosome C23098 Processing chromosome C23098 INFO [2014-07-02 14:59:12,919] [Preprocessor.java:241] [main] Processing chromosome C23102 Processing chromosome C23102 INFO [2014-07-02 14:59:12,965] [Preprocessor.java:241] [main] Processing chromosome C23104 Processing chromosome C23104 INFO [2014-07-02 14:59:12,998] [Preprocessor.java:241] [main] Processing chromosome C23110 Processing chromosome C23110 INFO [2014-07-02 14:59:13,094] [Preprocessor.java:241] [main] Processing chromosome C23116 Processing chromosome C23116 INFO [2014-07-02 14:59:13,117] [Preprocessor.java:241] [main] Processing chromosome C2313 Processing chromosome C2313 INFO [2014-07-02 14:59:13,186] [Preprocessor.java:241] [main] Processing chromosome C23144 Processing chromosome C23144 INFO [2014-07-02 14:59:13,193] [Preprocessor.java:241] [main] Processing chromosome C23154 Processing chromosome C23154 INFO [2014-07-02 14:59:13,225] [Preprocessor.java:241] [main] Processing chromosome C23158 Processing chromosome C23158 INFO [2014-07-02 14:59:13,252] [Preprocessor.java:241] [main] Processing chromosome C23162 Processing chromosome C23162 INFO [2014-07-02 14:59:13,272] [Preprocessor.java:241] [main] Processing chromosome C23166 Processing chromosome C23166 INFO [2014-07-02 14:59:13,277] [Preprocessor.java:241] [main] Processing chromosome C23172 Processing chromosome C23172 INFO [2014-07-02 14:59:13,310] [Preprocessor.java:241] [main] Processing chromosome C23180 Processing chromosome C23180 INFO [2014-07-02 14:59:13,368] [Preprocessor.java:241] [main] Processing chromosome C23196 Processing chromosome C23196 INFO [2014-07-02 14:59:13,386] [Preprocessor.java:241] [main] Processing chromosome C23202 Processing chromosome C23202 INFO [2014-07-02 14:59:13,402] [Preprocessor.java:241] [main] Processing chromosome C23204 Processing chromosome C23204 INFO [2014-07-02 14:59:13,406] [Preprocessor.java:241] [main] Processing chromosome C23214 Processing chromosome C23214 INFO [2014-07-02 14:59:13,424] [Preprocessor.java:241] [main] Processing chromosome C23220 Processing chromosome C23220 INFO [2014-07-02 14:59:13,450] [Preprocessor.java:241] [main] Processing chromosome C23222 Processing chromosome C23222 INFO [2014-07-02 14:59:13,464] [Preprocessor.java:241] [main] Processing chromosome C23230 Processing chromosome C23230 INFO [2014-07-02 14:59:13,525] [Preprocessor.java:241] [main] Processing chromosome C23232 Processing chromosome C23232 INFO [2014-07-02 14:59:13,566] [Preprocessor.java:241] [main] Processing chromosome C23238 Processing chromosome C23238 INFO [2014-07-02 14:59:13,583] [Preprocessor.java:241] [main] Processing chromosome C23248 Processing chromosome C23248 INFO [2014-07-02 14:59:13,624] [Preprocessor.java:241] [main] Processing chromosome C23254 Processing chromosome C23254 INFO [2014-07-02 14:59:13,652] [Preprocessor.java:241] [main] Processing chromosome C23256 Processing chromosome C23256 INFO [2014-07-02 14:59:13,690] [Preprocessor.java:241] [main] Processing chromosome C23258 Processing chromosome C23258 INFO [2014-07-02 14:59:13,699] [Preprocessor.java:241] [main] Processing chromosome C23264 Processing chromosome C23264 INFO [2014-07-02 14:59:13,752] [Preprocessor.java:241] [main] Processing chromosome C23272 Processing chromosome C23272 INFO [2014-07-02 14:59:13,796] [Preprocessor.java:241] [main] Processing chromosome C23274 Processing chromosome C23274 INFO [2014-07-02 14:59:13,805] [Preprocessor.java:241] [main] Processing chromosome C23278 Processing chromosome C23278 INFO [2014-07-02 14:59:13,822] [Preprocessor.java:241] [main] Processing chromosome C23298 Processing chromosome C23298 INFO [2014-07-02 14:59:13,857] [Preprocessor.java:241] [main] Processing chromosome C23312 Processing chromosome C23312 INFO [2014-07-02 14:59:13,886] [Preprocessor.java:241] [main] Processing chromosome C23316 Processing chromosome C23316 INFO [2014-07-02 14:59:13,897] [Preprocessor.java:241] [main] Processing chromosome C23328 Processing chromosome C23328 INFO [2014-07-02 14:59:13,930] [Preprocessor.java:241] [main] Processing chromosome C23330 Processing chromosome C23330 INFO [2014-07-02 14:59:13,934] [Preprocessor.java:241] [main] Processing chromosome C23338 Processing chromosome C23338 INFO [2014-07-02 14:59:14,001] [Preprocessor.java:241] [main] Processing chromosome C23360 Processing chromosome C23360 INFO [2014-07-02 14:59:14,071] [Preprocessor.java:241] [main] Processing chromosome C23362 Processing chromosome C23362 INFO [2014-07-02 14:59:14,122] [Preprocessor.java:241] [main] Processing chromosome C23366 Processing chromosome C23366 INFO [2014-07-02 14:59:14,195] [Preprocessor.java:241] [main] Processing chromosome C23370 Processing chromosome C23370 INFO [2014-07-02 14:59:14,236] [Preprocessor.java:241] [main] Processing chromosome C23372 Processing chromosome C23372 INFO [2014-07-02 14:59:14,278] [Preprocessor.java:241] [main] Processing chromosome C23378 Processing chromosome C23378 INFO [2014-07-02 14:59:14,293] [Preprocessor.java:241] [main] Processing chromosome C23390 Processing chromosome C23390 INFO [2014-07-02 14:59:14,317] [Preprocessor.java:241] [main] Processing chromosome C23400 Processing chromosome C23400 INFO [2014-07-02 14:59:14,360] [Preprocessor.java:241] [main] Processing chromosome C23410 Processing chromosome C23410 INFO [2014-07-02 14:59:14,364] [Preprocessor.java:241] [main] Processing chromosome C23422 Processing chromosome C23422 INFO [2014-07-02 14:59:14,378] [Preprocessor.java:241] [main] Processing chromosome C23424 Processing chromosome C23424 INFO [2014-07-02 14:59:14,412] [Preprocessor.java:241] [main] Processing chromosome C23426 Processing chromosome C23426 INFO [2014-07-02 14:59:14,438] [Preprocessor.java:241] [main] Processing chromosome C23428 Processing chromosome C23428 INFO [2014-07-02 14:59:14,448] [Preprocessor.java:241] [main] Processing chromosome C23432 Processing chromosome C23432 INFO [2014-07-02 14:59:14,481] [Preprocessor.java:241] [main] Processing chromosome C23438 Processing chromosome C23438 INFO [2014-07-02 14:59:14,504] [Preprocessor.java:241] [main] Processing chromosome C23442 Processing chromosome C23442 INFO [2014-07-02 14:59:14,554] [Preprocessor.java:241] [main] Processing chromosome C23444 Processing chromosome C23444 INFO [2014-07-02 14:59:14,603] [Preprocessor.java:241] [main] Processing chromosome C23446 Processing chromosome C23446 INFO [2014-07-02 14:59:14,625] [Preprocessor.java:241] [main] Processing chromosome C23452 Processing chromosome C23452 INFO [2014-07-02 14:59:14,630] [Preprocessor.java:241] [main] Processing chromosome C23454 Processing chromosome C23454 INFO [2014-07-02 14:59:14,665] [Preprocessor.java:241] [main] Processing chromosome C23456 Processing chromosome C23456 INFO [2014-07-02 14:59:14,714] [Preprocessor.java:241] [main] Processing chromosome C23460 Processing chromosome C23460 INFO [2014-07-02 14:59:14,756] [Preprocessor.java:241] [main] Processing chromosome C23468 Processing chromosome C23468 INFO [2014-07-02 14:59:14,773] [Preprocessor.java:241] [main] Processing chromosome C23470 Processing chromosome C23470 INFO [2014-07-02 14:59:14,784] [Preprocessor.java:241] [main] Processing chromosome C23472 Processing chromosome C23472 INFO [2014-07-02 14:59:14,812] [Preprocessor.java:241] [main] Processing chromosome C23482 Processing chromosome C23482 INFO [2014-07-02 14:59:14,835] [Preprocessor.java:241] [main] Processing chromosome C23484 Processing chromosome C23484 INFO [2014-07-02 14:59:14,880] [Preprocessor.java:241] [main] Processing chromosome C23492 Processing chromosome C23492 INFO [2014-07-02 14:59:14,907] [Preprocessor.java:241] [main] Processing chromosome C23494 Processing chromosome C23494 INFO [2014-07-02 14:59:14,947] [Preprocessor.java:241] [main] Processing chromosome C23496 Processing chromosome C23496 INFO [2014-07-02 14:59:14,957] [Preprocessor.java:241] [main] Processing chromosome C23498 Processing chromosome C23498 INFO [2014-07-02 14:59:14,992] [Preprocessor.java:241] [main] Processing chromosome C23500 Processing chromosome C23500 INFO [2014-07-02 14:59:15,028] [Preprocessor.java:241] [main] Processing chromosome C23502 Processing chromosome C23502 INFO [2014-07-02 14:59:15,032] [Preprocessor.java:241] [main] Processing chromosome C23512 Processing chromosome C23512 INFO [2014-07-02 14:59:15,036] [Preprocessor.java:241] [main] Processing chromosome C23514 Processing chromosome C23514 INFO [2014-07-02 14:59:15,053] [Preprocessor.java:241] [main] Processing chromosome C23530 Processing chromosome C23530 INFO [2014-07-02 14:59:15,063] [Preprocessor.java:241] [main] Processing chromosome C2355 Processing chromosome C2355 INFO [2014-07-02 14:59:15,125] [Preprocessor.java:241] [main] Processing chromosome C23564 Processing chromosome C23564 INFO [2014-07-02 14:59:15,165] [Preprocessor.java:241] [main] Processing chromosome C23566 Processing chromosome C23566 INFO [2014-07-02 14:59:15,184] [Preprocessor.java:241] [main] Processing chromosome C23570 Processing chromosome C23570 INFO [2014-07-02 14:59:15,211] [Preprocessor.java:241] [main] Processing chromosome C23572 Processing chromosome C23572 INFO [2014-07-02 14:59:15,258] [Preprocessor.java:241] [main] Processing chromosome C23580 Processing chromosome C23580 INFO [2014-07-02 14:59:15,300] [Preprocessor.java:241] [main] Processing chromosome C23582 Processing chromosome C23582 INFO [2014-07-02 14:59:15,322] [Preprocessor.java:241] [main] Processing chromosome C23586 Processing chromosome C23586 INFO [2014-07-02 14:59:15,361] [Preprocessor.java:241] [main] Processing chromosome C23592 Processing chromosome C23592 INFO [2014-07-02 14:59:15,399] [Preprocessor.java:241] [main] Processing chromosome C23594 Processing chromosome C23594 INFO [2014-07-02 14:59:15,415] [Preprocessor.java:241] [main] Processing chromosome C23608 Processing chromosome C23608 INFO [2014-07-02 14:59:15,429] [Preprocessor.java:241] [main] Processing chromosome C23616 Processing chromosome C23616 INFO [2014-07-02 14:59:15,449] [Preprocessor.java:241] [main] Processing chromosome C23626 Processing chromosome C23626 INFO [2014-07-02 14:59:15,463] [Preprocessor.java:241] [main] Processing chromosome C23638 Processing chromosome C23638 INFO [2014-07-02 14:59:15,552] [Preprocessor.java:241] [main] Processing chromosome C23642 Processing chromosome C23642 INFO [2014-07-02 14:59:15,579] [Preprocessor.java:241] [main] Processing chromosome C23648 Processing chromosome C23648 INFO [2014-07-02 14:59:15,604] [Preprocessor.java:241] [main] Processing chromosome C23662 Processing chromosome C23662 INFO [2014-07-02 14:59:15,612] [Preprocessor.java:241] [main] Processing chromosome C23676 Processing chromosome C23676 INFO [2014-07-02 14:59:15,634] [Preprocessor.java:241] [main] Processing chromosome C23682 Processing chromosome C23682 INFO [2014-07-02 14:59:15,663] [Preprocessor.java:241] [main] Processing chromosome C23700 Processing chromosome C23700 INFO [2014-07-02 14:59:15,672] [Preprocessor.java:241] [main] Processing chromosome C23702 Processing chromosome C23702 INFO [2014-07-02 14:59:15,703] [Preprocessor.java:241] [main] Processing chromosome C23714 Processing chromosome C23714 INFO [2014-07-02 14:59:15,707] [Preprocessor.java:241] [main] Processing chromosome C23716 Processing chromosome C23716 INFO [2014-07-02 14:59:15,743] [Preprocessor.java:241] [main] Processing chromosome C23726 Processing chromosome C23726 INFO [2014-07-02 14:59:15,748] [Preprocessor.java:241] [main] Processing chromosome C23732 Processing chromosome C23732 INFO [2014-07-02 14:59:15,759] [Preprocessor.java:241] [main] Processing chromosome C23734 Processing chromosome C23734 INFO [2014-07-02 14:59:15,770] [Preprocessor.java:241] [main] Processing chromosome C23742 Processing chromosome C23742 INFO [2014-07-02 14:59:15,791] [Preprocessor.java:241] [main] Processing chromosome C23744 Processing chromosome C23744 INFO [2014-07-02 14:59:15,851] [Preprocessor.java:241] [main] Processing chromosome C23752 Processing chromosome C23752 INFO [2014-07-02 14:59:15,855] [Preprocessor.java:241] [main] Processing chromosome C23756 Processing chromosome C23756 INFO [2014-07-02 14:59:15,930] [Preprocessor.java:241] [main] Processing chromosome C23760 Processing chromosome C23760 INFO [2014-07-02 14:59:18,450] [Preprocessor.java:241] [main] Processing chromosome C23772 Processing chromosome C23772 INFO [2014-07-02 14:59:18,490] [Preprocessor.java:241] [main] Processing chromosome C23776 Processing chromosome C23776 INFO [2014-07-02 14:59:18,496] [Preprocessor.java:241] [main] Processing chromosome C23778 Processing chromosome C23778 INFO [2014-07-02 14:59:18,507] [Preprocessor.java:241] [main] Processing chromosome C23786 Processing chromosome C23786 INFO [2014-07-02 14:59:18,520] [Preprocessor.java:241] [main] Processing chromosome C23796 Processing chromosome C23796 INFO [2014-07-02 14:59:18,550] [Preprocessor.java:241] [main] Processing chromosome C23800 Processing chromosome C23800 INFO [2014-07-02 14:59:18,559] [Preprocessor.java:241] [main] Processing chromosome C23804 Processing chromosome C23804 INFO [2014-07-02 14:59:18,564] [Preprocessor.java:241] [main] Processing chromosome C23808 Processing chromosome C23808 INFO [2014-07-02 14:59:18,572] [Preprocessor.java:241] [main] Processing chromosome C23812 Processing chromosome C23812 INFO [2014-07-02 14:59:18,598] [Preprocessor.java:241] [main] Processing chromosome C23818 Processing chromosome C23818 INFO [2014-07-02 14:59:18,648] [Preprocessor.java:241] [main] Processing chromosome C23822 Processing chromosome C23822 INFO [2014-07-02 14:59:18,662] [Preprocessor.java:241] [main] Processing chromosome C23828 Processing chromosome C23828 INFO [2014-07-02 14:59:18,699] [Preprocessor.java:241] [main] Processing chromosome C23836 Processing chromosome C23836 INFO [2014-07-02 14:59:18,747] [Preprocessor.java:241] [main] Processing chromosome C23838 Processing chromosome C23838 INFO [2014-07-02 14:59:18,790] [Preprocessor.java:241] [main] Processing chromosome C23856 Processing chromosome C23856 INFO [2014-07-02 14:59:18,799] [Preprocessor.java:241] [main] Processing chromosome C23858 Processing chromosome C23858 INFO [2014-07-02 14:59:18,828] [Preprocessor.java:241] [main] Processing chromosome C23860 Processing chromosome C23860 INFO [2014-07-02 14:59:18,849] [Preprocessor.java:241] [main] Processing chromosome C23868 Processing chromosome C23868 INFO [2014-07-02 14:59:18,908] [Preprocessor.java:241] [main] Processing chromosome C23878 Processing chromosome C23878 INFO [2014-07-02 14:59:18,936] [Preprocessor.java:241] [main] Processing chromosome C23882 Processing chromosome C23882 INFO [2014-07-02 14:59:18,949] [Preprocessor.java:241] [main] Processing chromosome C23886 Processing chromosome C23886 INFO [2014-07-02 14:59:18,974] [Preprocessor.java:241] [main] Processing chromosome C23890 Processing chromosome C23890 INFO [2014-07-02 14:59:19,003] [Preprocessor.java:241] [main] Processing chromosome C23898 Processing chromosome C23898 INFO [2014-07-02 14:59:19,012] [Preprocessor.java:241] [main] Processing chromosome C23900 Processing chromosome C23900 INFO [2014-07-02 14:59:19,047] [Preprocessor.java:241] [main] Processing chromosome C23908 Processing chromosome C23908 INFO [2014-07-02 14:59:19,053] [Preprocessor.java:241] [main] Processing chromosome C23922 Processing chromosome C23922 INFO [2014-07-02 14:59:19,080] [Preprocessor.java:241] [main] Processing chromosome C23926 Processing chromosome C23926 INFO [2014-07-02 14:59:19,101] [Preprocessor.java:241] [main] Processing chromosome C23930 Processing chromosome C23930 INFO [2014-07-02 14:59:19,141] [Preprocessor.java:241] [main] Processing chromosome C23944 Processing chromosome C23944 INFO [2014-07-02 14:59:19,157] [Preprocessor.java:241] [main] Processing chromosome C23946 Processing chromosome C23946 INFO [2014-07-02 14:59:19,192] [Preprocessor.java:241] [main] Processing chromosome C23956 Processing chromosome C23956 INFO [2014-07-02 14:59:19,214] [Preprocessor.java:241] [main] Processing chromosome C23962 Processing chromosome C23962 INFO [2014-07-02 14:59:19,221] [Preprocessor.java:241] [main] Processing chromosome C23984 Processing chromosome C23984 INFO [2014-07-02 14:59:19,224] [Preprocessor.java:241] [main] Processing chromosome C24000 Processing chromosome C24000 INFO [2014-07-02 14:59:19,273] [Preprocessor.java:241] [main] Processing chromosome C24008 Processing chromosome C24008 INFO [2014-07-02 14:59:19,280] [Preprocessor.java:241] [main] Processing chromosome C24014 Processing chromosome C24014 INFO [2014-07-02 14:59:19,297] [Preprocessor.java:241] [main] Processing chromosome C24020 Processing chromosome C24020 INFO [2014-07-02 14:59:19,346] [Preprocessor.java:241] [main] Processing chromosome C24022 Processing chromosome C24022 INFO [2014-07-02 14:59:19,380] [Preprocessor.java:241] [main] Processing chromosome C24024 Processing chromosome C24024 INFO [2014-07-02 14:59:19,400] [Preprocessor.java:241] [main] Processing chromosome C24030 Processing chromosome C24030 INFO [2014-07-02 14:59:19,430] [Preprocessor.java:241] [main] Processing chromosome C24036 Processing chromosome C24036 INFO [2014-07-02 14:59:19,487] [Preprocessor.java:241] [main] Processing chromosome C24042 Processing chromosome C24042 INFO [2014-07-02 14:59:19,525] [Preprocessor.java:241] [main] Processing chromosome C24046 Processing chromosome C24046 INFO [2014-07-02 14:59:19,528] [Preprocessor.java:241] [main] Processing chromosome C24052 Processing chromosome C24052 INFO [2014-07-02 14:59:19,565] [Preprocessor.java:241] [main] Processing chromosome C24068 Processing chromosome C24068 INFO [2014-07-02 14:59:19,618] [Preprocessor.java:241] [main] Processing chromosome C24074 Processing chromosome C24074 INFO [2014-07-02 14:59:19,637] [Preprocessor.java:241] [main] Processing chromosome C24090 Processing chromosome C24090 INFO [2014-07-02 14:59:19,661] [Preprocessor.java:241] [main] Processing chromosome C24098 Processing chromosome C24098 INFO [2014-07-02 14:59:19,667] [Preprocessor.java:241] [main] Processing chromosome C24112 Processing chromosome C24112 INFO [2014-07-02 14:59:19,677] [Preprocessor.java:241] [main] Processing chromosome C24114 Processing chromosome C24114 INFO [2014-07-02 14:59:19,698] [Preprocessor.java:241] [main] Processing chromosome C24118 Processing chromosome C24118 INFO [2014-07-02 14:59:19,724] [Preprocessor.java:241] [main] Processing chromosome C24128 Processing chromosome C24128 INFO [2014-07-02 14:59:19,730] [Preprocessor.java:241] [main] Processing chromosome C24134 Processing chromosome C24134 INFO [2014-07-02 14:59:19,735] [Preprocessor.java:241] [main] Processing chromosome C24138 Processing chromosome C24138 INFO [2014-07-02 14:59:19,756] [Preprocessor.java:241] [main] Processing chromosome C24148 Processing chromosome C24148 INFO [2014-07-02 14:59:19,789] [Preprocessor.java:241] [main] Processing chromosome C24158 Processing chromosome C24158 INFO [2014-07-02 14:59:19,812] [Preprocessor.java:241] [main] Processing chromosome C24160 Processing chromosome C24160 INFO [2014-07-02 14:59:19,820] [Preprocessor.java:241] [main] Processing chromosome C24184 Processing chromosome C24184 INFO [2014-07-02 14:59:19,850] [Preprocessor.java:241] [main] Processing chromosome C24196 Processing chromosome C24196 INFO [2014-07-02 14:59:19,887] [Preprocessor.java:241] [main] Processing chromosome C24204 Processing chromosome C24204 INFO [2014-07-02 14:59:19,891] [Preprocessor.java:241] [main] Processing chromosome C24224 Processing chromosome C24224 INFO [2014-07-02 14:59:19,932] [Preprocessor.java:241] [main] Processing chromosome C24226 Processing chromosome C24226 INFO [2014-07-02 14:59:19,954] [Preprocessor.java:241] [main] Processing chromosome C24232 Processing chromosome C24232 INFO [2014-07-02 14:59:20,000] [Preprocessor.java:241] [main] Processing chromosome C24242 Processing chromosome C24242 INFO [2014-07-02 14:59:20,014] [Preprocessor.java:241] [main] Processing chromosome C24244 Processing chromosome C24244 INFO [2014-07-02 14:59:20,060] [Preprocessor.java:241] [main] Processing chromosome C24248 Processing chromosome C24248 INFO [2014-07-02 14:59:20,073] [Preprocessor.java:241] [main] Processing chromosome C24252 Processing chromosome C24252 INFO [2014-07-02 14:59:20,096] [Preprocessor.java:241] [main] Processing chromosome C24254 Processing chromosome C24254 INFO [2014-07-02 14:59:20,125] [Preprocessor.java:241] [main] Processing chromosome C24270 Processing chromosome C24270 INFO [2014-07-02 14:59:20,169] [Preprocessor.java:241] [main] Processing chromosome C24274 Processing chromosome C24274 INFO [2014-07-02 14:59:20,192] [Preprocessor.java:241] [main] Processing chromosome C24276 Processing chromosome C24276 INFO [2014-07-02 14:59:20,245] [Preprocessor.java:241] [main] Processing chromosome C24280 Processing chromosome C24280 INFO [2014-07-02 14:59:20,254] [Preprocessor.java:241] [main] Processing chromosome C24292 Processing chromosome C24292 INFO [2014-07-02 14:59:20,259] [Preprocessor.java:241] [main] Processing chromosome C24294 Processing chromosome C24294 INFO [2014-07-02 14:59:20,265] [Preprocessor.java:241] [main] Processing chromosome C24316 Processing chromosome C24316 INFO [2014-07-02 14:59:20,300] [Preprocessor.java:241] [main] Processing chromosome C24318 Processing chromosome C24318 INFO [2014-07-02 14:59:20,316] [Preprocessor.java:241] [main] Processing chromosome C24320 Processing chromosome C24320 INFO [2014-07-02 14:59:20,331] [Preprocessor.java:241] [main] Processing chromosome C24328 Processing chromosome C24328 INFO [2014-07-02 14:59:20,338] [Preprocessor.java:241] [main] Processing chromosome C24334 Processing chromosome C24334 INFO [2014-07-02 14:59:20,371] [Preprocessor.java:241] [main] Processing chromosome C24342 Processing chromosome C24342 INFO [2014-07-02 14:59:20,382] [Preprocessor.java:241] [main] Processing chromosome C24346 Processing chromosome C24346 INFO [2014-07-02 14:59:20,399] [Preprocessor.java:241] [main] Processing chromosome C24380 Processing chromosome C24380 INFO [2014-07-02 14:59:20,424] [Preprocessor.java:241] [main] Processing chromosome C24384 Processing chromosome C24384 INFO [2014-07-02 14:59:20,443] [Preprocessor.java:241] [main] Processing chromosome C24398 Processing chromosome C24398 INFO [2014-07-02 14:59:20,497] [Preprocessor.java:241] [main] Processing chromosome C24400 Processing chromosome C24400 INFO [2014-07-02 14:59:20,534] [Preprocessor.java:241] [main] Processing chromosome C24418 Processing chromosome C24418 INFO [2014-07-02 14:59:20,544] [Preprocessor.java:241] [main] Processing chromosome C24420 Processing chromosome C24420 INFO [2014-07-02 14:59:20,574] [Preprocessor.java:241] [main] Processing chromosome C24426 Processing chromosome C24426 INFO [2014-07-02 14:59:20,592] [Preprocessor.java:241] [main] Processing chromosome C24428 Processing chromosome C24428 INFO [2014-07-02 14:59:20,617] [Preprocessor.java:241] [main] Processing chromosome C24432 Processing chromosome C24432 INFO [2014-07-02 14:59:20,651] [Preprocessor.java:241] [main] Processing chromosome C24436 Processing chromosome C24436 INFO [2014-07-02 14:59:20,658] [Preprocessor.java:241] [main] Processing chromosome C24438 Processing chromosome C24438 INFO [2014-07-02 14:59:20,693] [Preprocessor.java:241] [main] Processing chromosome C24440 Processing chromosome C24440 INFO [2014-07-02 14:59:20,696] [Preprocessor.java:241] [main] Processing chromosome C24442 Processing chromosome C24442 INFO [2014-07-02 14:59:20,765] [Preprocessor.java:241] [main] Processing chromosome C24446 Processing chromosome C24446 INFO [2014-07-02 14:59:20,771] [Preprocessor.java:241] [main] Processing chromosome C24450 Processing chromosome C24450 INFO [2014-07-02 14:59:20,835] [Preprocessor.java:241] [main] Processing chromosome C24454 Processing chromosome C24454 INFO [2014-07-02 14:59:20,844] [Preprocessor.java:241] [main] Processing chromosome C24456 Processing chromosome C24456 INFO [2014-07-02 14:59:20,852] [Preprocessor.java:241] [main] Processing chromosome C24464 Processing chromosome C24464 INFO [2014-07-02 14:59:20,906] [Preprocessor.java:241] [main] Processing chromosome C24470 Processing chromosome C24470 INFO [2014-07-02 14:59:20,910] [Preprocessor.java:241] [main] Processing chromosome C24478 Processing chromosome C24478 INFO [2014-07-02 14:59:20,931] [Preprocessor.java:241] [main] Processing chromosome C24494 Processing chromosome C24494 INFO [2014-07-02 14:59:20,947] [Preprocessor.java:241] [main] Processing chromosome C24498 Processing chromosome C24498 INFO [2014-07-02 14:59:20,965] [Preprocessor.java:241] [main] Processing chromosome C24514 Processing chromosome C24514 INFO [2014-07-02 14:59:20,996] [Preprocessor.java:241] [main] Processing chromosome C24516 Processing chromosome C24516 INFO [2014-07-02 14:59:21,005] [Preprocessor.java:241] [main] Processing chromosome C24520 Processing chromosome C24520 INFO [2014-07-02 14:59:21,052] [Preprocessor.java:241] [main] Processing chromosome C24524 Processing chromosome C24524 INFO [2014-07-02 14:59:21,063] [Preprocessor.java:241] [main] Processing chromosome C2455 Processing chromosome C2455 INFO [2014-07-02 14:59:21,095] [Preprocessor.java:241] [main] Processing chromosome C24556 Processing chromosome C24556 INFO [2014-07-02 14:59:21,124] [Preprocessor.java:241] [main] Processing chromosome C24562 Processing chromosome C24562 INFO [2014-07-02 14:59:21,176] [Preprocessor.java:241] [main] Processing chromosome C24564 Processing chromosome C24564 INFO [2014-07-02 14:59:21,184] [Preprocessor.java:241] [main] Processing chromosome C24566 Processing chromosome C24566 INFO [2014-07-02 14:59:21,200] [Preprocessor.java:241] [main] Processing chromosome C24570 Processing chromosome C24570 INFO [2014-07-02 14:59:21,232] [Preprocessor.java:241] [main] Processing chromosome C24590 Processing chromosome C24590 INFO [2014-07-02 14:59:21,263] [Preprocessor.java:241] [main] Processing chromosome C24596 Processing chromosome C24596 INFO [2014-07-02 14:59:21,266] [Preprocessor.java:241] [main] Processing chromosome C24604 Processing chromosome C24604 INFO [2014-07-02 14:59:21,270] [Preprocessor.java:241] [main] Processing chromosome C24608 Processing chromosome C24608 INFO [2014-07-02 14:59:21,330] [Preprocessor.java:241] [main] Processing chromosome C24616 Processing chromosome C24616 INFO [2014-07-02 14:59:21,363] [Preprocessor.java:241] [main] Processing chromosome C24628 Processing chromosome C24628 INFO [2014-07-02 14:59:21,366] [Preprocessor.java:241] [main] Processing chromosome C24632 Processing chromosome C24632 INFO [2014-07-02 14:59:21,398] [Preprocessor.java:241] [main] Processing chromosome C24634 Processing chromosome C24634 INFO [2014-07-02 14:59:21,436] [Preprocessor.java:241] [main] Processing chromosome C24640 Processing chromosome C24640 INFO [2014-07-02 14:59:21,442] [Preprocessor.java:241] [main] Processing chromosome C24642 Processing chromosome C24642 INFO [2014-07-02 14:59:21,477] [Preprocessor.java:241] [main] Processing chromosome C24650 Processing chromosome C24650 INFO [2014-07-02 14:59:21,487] [Preprocessor.java:241] [main] Processing chromosome C24654 Processing chromosome C24654 INFO [2014-07-02 14:59:21,516] [Preprocessor.java:241] [main] Processing chromosome C24658 Processing chromosome C24658 INFO [2014-07-02 14:59:21,522] [Preprocessor.java:241] [main] Processing chromosome C24672 Processing chromosome C24672 INFO [2014-07-02 14:59:21,528] [Preprocessor.java:241] [main] Processing chromosome C24676 Processing chromosome C24676 INFO [2014-07-02 14:59:21,555] [Preprocessor.java:241] [main] Processing chromosome C24678 Processing chromosome C24678 INFO [2014-07-02 14:59:21,588] [Preprocessor.java:241] [main] Processing chromosome C24686 Processing chromosome C24686 INFO [2014-07-02 14:59:21,611] [Preprocessor.java:241] [main] Processing chromosome C24688 Processing chromosome C24688 INFO [2014-07-02 14:59:21,615] [Preprocessor.java:241] [main] Processing chromosome C24698 Processing chromosome C24698 INFO [2014-07-02 14:59:21,653] [Preprocessor.java:241] [main] Processing chromosome C24704 Processing chromosome C24704 INFO [2014-07-02 14:59:21,686] [Preprocessor.java:241] [main] Processing chromosome C24710 Processing chromosome C24710 INFO [2014-07-02 14:59:21,712] [Preprocessor.java:241] [main] Processing chromosome C24716 Processing chromosome C24716 INFO [2014-07-02 14:59:21,715] [Preprocessor.java:241] [main] Processing chromosome C24718 Processing chromosome C24718 INFO [2014-07-02 14:59:21,763] [Preprocessor.java:241] [main] Processing chromosome C24724 Processing chromosome C24724 INFO [2014-07-02 14:59:21,793] [Preprocessor.java:241] [main] Processing chromosome C24734 Processing chromosome C24734 INFO [2014-07-02 14:59:21,823] [Preprocessor.java:241] [main] Processing chromosome C24740 Processing chromosome C24740 INFO [2014-07-02 14:59:21,840] [Preprocessor.java:241] [main] Processing chromosome C24744 Processing chromosome C24744 INFO [2014-07-02 14:59:21,863] [Preprocessor.java:241] [main] Processing chromosome C24748 Processing chromosome C24748 INFO [2014-07-02 14:59:21,884] [Preprocessor.java:241] [main] Processing chromosome C24750 Processing chromosome C24750 INFO [2014-07-02 14:59:21,908] [Preprocessor.java:241] [main] Processing chromosome C24756 Processing chromosome C24756 INFO [2014-07-02 14:59:21,913] [Preprocessor.java:241] [main] Processing chromosome C24758 Processing chromosome C24758 INFO [2014-07-02 14:59:21,936] [Preprocessor.java:241] [main] Processing chromosome C24766 Processing chromosome C24766 INFO [2014-07-02 14:59:21,942] [Preprocessor.java:241] [main] Processing chromosome C24778 Processing chromosome C24778 INFO [2014-07-02 14:59:21,948] [Preprocessor.java:241] [main] Processing chromosome C2479 Processing chromosome C2479 INFO [2014-07-02 14:59:21,989] [Preprocessor.java:241] [main] Processing chromosome C24790 Processing chromosome C24790 INFO [2014-07-02 14:59:22,042] [Preprocessor.java:241] [main] Processing chromosome C24804 Processing chromosome C24804 INFO [2014-07-02 14:59:22,077] [Preprocessor.java:241] [main] Processing chromosome C24814 Processing chromosome C24814 INFO [2014-07-02 14:59:22,100] [Preprocessor.java:241] [main] Processing chromosome C24818 Processing chromosome C24818 INFO [2014-07-02 14:59:22,156] [Preprocessor.java:241] [main] Processing chromosome C24820 Processing chromosome C24820 INFO [2014-07-02 14:59:22,161] [Preprocessor.java:241] [main] Processing chromosome C24824 Processing chromosome C24824 INFO [2014-07-02 14:59:22,209] [Preprocessor.java:241] [main] Processing chromosome C24826 Processing chromosome C24826 INFO [2014-07-02 14:59:22,241] [Preprocessor.java:241] [main] Processing chromosome C24828 Processing chromosome C24828 INFO [2014-07-02 14:59:22,261] [Preprocessor.java:241] [main] Processing chromosome C24850 Processing chromosome C24850 INFO [2014-07-02 14:59:22,283] [Preprocessor.java:241] [main] Processing chromosome C24862 Processing chromosome C24862 INFO [2014-07-02 14:59:22,307] [Preprocessor.java:241] [main] Processing chromosome C24868 Processing chromosome C24868 INFO [2014-07-02 14:59:22,489] [Preprocessor.java:241] [main] Processing chromosome C24874 Processing chromosome C24874 INFO [2014-07-02 14:59:22,528] [Preprocessor.java:241] [main] Processing chromosome C24888 Processing chromosome C24888 INFO [2014-07-02 14:59:22,562] [Preprocessor.java:241] [main] Processing chromosome C24892 Processing chromosome C24892 INFO [2014-07-02 14:59:22,569] [Preprocessor.java:241] [main] Processing chromosome C24900 Processing chromosome C24900 INFO [2014-07-02 14:59:22,578] [Preprocessor.java:241] [main] Processing chromosome C24902 Processing chromosome C24902 INFO [2014-07-02 14:59:22,584] [Preprocessor.java:241] [main] Processing chromosome C24910 Processing chromosome C24910 INFO [2014-07-02 14:59:22,599] [Preprocessor.java:241] [main] Processing chromosome C24914 Processing chromosome C24914 INFO [2014-07-02 14:59:22,629] [Preprocessor.java:241] [main] Processing chromosome C24916 Processing chromosome C24916 INFO [2014-07-02 14:59:22,682] [Preprocessor.java:241] [main] Processing chromosome C24920 Processing chromosome C24920 INFO [2014-07-02 14:59:22,698] [Preprocessor.java:241] [main] Processing chromosome C24932 Processing chromosome C24932 INFO [2014-07-02 14:59:22,723] [Preprocessor.java:241] [main] Processing chromosome C24934 Processing chromosome C24934 INFO [2014-07-02 14:59:22,768] [Preprocessor.java:241] [main] Processing chromosome C24942 Processing chromosome C24942 INFO [2014-07-02 14:59:22,799] [Preprocessor.java:241] [main] Processing chromosome C24952 Processing chromosome C24952 INFO [2014-07-02 14:59:22,840] [Preprocessor.java:241] [main] Processing chromosome C24960 Processing chromosome C24960 INFO [2014-07-02 14:59:22,888] [Preprocessor.java:241] [main] Processing chromosome C24962 Processing chromosome C24962 INFO [2014-07-02 14:59:22,929] [Preprocessor.java:241] [main] Processing chromosome C24964 Processing chromosome C24964 INFO [2014-07-02 14:59:22,953] [Preprocessor.java:241] [main] Processing chromosome C24966 Processing chromosome C24966 INFO [2014-07-02 14:59:22,973] [Preprocessor.java:241] [main] Processing chromosome C2497 Processing chromosome C2497 INFO [2014-07-02 14:59:23,036] [Preprocessor.java:241] [main] Processing chromosome C24974 Processing chromosome C24974 INFO [2014-07-02 14:59:23,075] [Preprocessor.java:241] [main] Processing chromosome C24984 Processing chromosome C24984 INFO [2014-07-02 14:59:23,103] [Preprocessor.java:241] [main] Processing chromosome C24994 Processing chromosome C24994 INFO [2014-07-02 14:59:23,162] [Preprocessor.java:241] [main] Processing chromosome C25 Processing chromosome C25 INFO [2014-07-02 14:59:23,194] [Preprocessor.java:241] [main] Processing chromosome C25014 Processing chromosome C25014 INFO [2014-07-02 14:59:23,231] [Preprocessor.java:241] [main] Processing chromosome C25026 Processing chromosome C25026 INFO [2014-07-02 14:59:23,248] [Preprocessor.java:241] [main] Processing chromosome C25030 Processing chromosome C25030 INFO [2014-07-02 14:59:23,288] [Preprocessor.java:241] [main] Processing chromosome C25032 Processing chromosome C25032 INFO [2014-07-02 14:59:23,304] [Preprocessor.java:241] [main] Processing chromosome C25050 Processing chromosome C25050 INFO [2014-07-02 14:59:23,308] [Preprocessor.java:241] [main] Processing chromosome C25052 Processing chromosome C25052 INFO [2014-07-02 14:59:23,318] [Preprocessor.java:241] [main] Processing chromosome C25054 Processing chromosome C25054 INFO [2014-07-02 14:59:23,334] [Preprocessor.java:241] [main] Processing chromosome C25056 Processing chromosome C25056 INFO [2014-07-02 14:59:23,340] [Preprocessor.java:241] [main] Processing chromosome C25064 Processing chromosome C25064 INFO [2014-07-02 14:59:23,355] [Preprocessor.java:241] [main] Processing chromosome C25066 Processing chromosome C25066 INFO [2014-07-02 14:59:23,369] [Preprocessor.java:241] [main] Processing chromosome C25074 Processing chromosome C25074 INFO [2014-07-02 14:59:23,382] [Preprocessor.java:241] [main] Processing chromosome C25084 Processing chromosome C25084 INFO [2014-07-02 14:59:23,385] [Preprocessor.java:241] [main] Processing chromosome C25088 Processing chromosome C25088 INFO [2014-07-02 14:59:23,395] [Preprocessor.java:241] [main] Processing chromosome C25096 Processing chromosome C25096 INFO [2014-07-02 14:59:23,406] [Preprocessor.java:241] [main] Processing chromosome C25102 Processing chromosome C25102 INFO [2014-07-02 14:59:23,432] [Preprocessor.java:241] [main] Processing chromosome C25106 Processing chromosome C25106 INFO [2014-07-02 14:59:23,495] [Preprocessor.java:241] [main] Processing chromosome C25108 Processing chromosome C25108 INFO [2014-07-02 14:59:23,536] [Preprocessor.java:241] [main] Processing chromosome C25116 Processing chromosome C25116 INFO [2014-07-02 14:59:23,563] [Preprocessor.java:241] [main] Processing chromosome C25118 Processing chromosome C25118 INFO [2014-07-02 14:59:23,569] [Preprocessor.java:241] [main] Processing chromosome C25124 Processing chromosome C25124 INFO [2014-07-02 14:59:23,591] [Preprocessor.java:241] [main] Processing chromosome C25140 Processing chromosome C25140 INFO [2014-07-02 14:59:23,608] [Preprocessor.java:241] [main] Processing chromosome C25176 Processing chromosome C25176 INFO [2014-07-02 14:59:23,614] [Preprocessor.java:241] [main] Processing chromosome C25178 Processing chromosome C25178 INFO [2014-07-02 14:59:23,652] [Preprocessor.java:241] [main] Processing chromosome C25180 Processing chromosome C25180 INFO [2014-07-02 14:59:23,680] [Preprocessor.java:241] [main] Processing chromosome C25190 Processing chromosome C25190 INFO [2014-07-02 14:59:23,683] [Preprocessor.java:241] [main] Processing chromosome C25196 Processing chromosome C25196 INFO [2014-07-02 14:59:23,690] [Preprocessor.java:241] [main] Processing chromosome C25206 Processing chromosome C25206 INFO [2014-07-02 14:59:23,710] [Preprocessor.java:241] [main] Processing chromosome C25214 Processing chromosome C25214 INFO [2014-07-02 14:59:23,720] [Preprocessor.java:241] [main] Processing chromosome C25218 Processing chromosome C25218 INFO [2014-07-02 14:59:23,739] [Preprocessor.java:241] [main] Processing chromosome C25228 Processing chromosome C25228 INFO [2014-07-02 14:59:23,759] [Preprocessor.java:241] [main] Processing chromosome C25230 Processing chromosome C25230 INFO [2014-07-02 14:59:23,783] [Preprocessor.java:241] [main] Processing chromosome C25248 Processing chromosome C25248 INFO [2014-07-02 14:59:23,792] [Preprocessor.java:241] [main] Processing chromosome C25274 Processing chromosome C25274 INFO [2014-07-02 14:59:23,811] [Preprocessor.java:241] [main] Processing chromosome C25290 Processing chromosome C25290 INFO [2014-07-02 14:59:23,847] [Preprocessor.java:241] [main] Processing chromosome C25298 Processing chromosome C25298 INFO [2014-07-02 14:59:23,864] [Preprocessor.java:241] [main] Processing chromosome C25310 Processing chromosome C25310 INFO [2014-07-02 14:59:23,904] [Preprocessor.java:241] [main] Processing chromosome C25314 Processing chromosome C25314 INFO [2014-07-02 14:59:23,917] [Preprocessor.java:241] [main] Processing chromosome C25324 Processing chromosome C25324 INFO [2014-07-02 14:59:23,939] [Preprocessor.java:241] [main] Processing chromosome C25328 Processing chromosome C25328 INFO [2014-07-02 14:59:23,985] [Preprocessor.java:241] [main] Processing chromosome C2533 Processing chromosome C2533 INFO [2014-07-02 14:59:24,049] [Preprocessor.java:241] [main] Processing chromosome C25334 Processing chromosome C25334 INFO [2014-07-02 14:59:24,052] [Preprocessor.java:241] [main] Processing chromosome C25336 Processing chromosome C25336 INFO [2014-07-02 14:59:24,068] [Preprocessor.java:241] [main] Processing chromosome C25344 Processing chromosome C25344 INFO [2014-07-02 14:59:24,074] [Preprocessor.java:241] [main] Processing chromosome C25346 Processing chromosome C25346 INFO [2014-07-02 14:59:24,087] [Preprocessor.java:241] [main] Processing chromosome C25352 Processing chromosome C25352 INFO [2014-07-02 14:59:24,123] [Preprocessor.java:241] [main] Processing chromosome C25360 Processing chromosome C25360 INFO [2014-07-02 14:59:24,150] [Preprocessor.java:241] [main] Processing chromosome C25366 Processing chromosome C25366 INFO [2014-07-02 14:59:24,167] [Preprocessor.java:241] [main] Processing chromosome C25370 Processing chromosome C25370 INFO [2014-07-02 14:59:24,171] [Preprocessor.java:241] [main] Processing chromosome C25384 Processing chromosome C25384 INFO [2014-07-02 14:59:24,183] [Preprocessor.java:241] [main] Processing chromosome C25394 Processing chromosome C25394 INFO [2014-07-02 14:59:24,198] [Preprocessor.java:241] [main] Processing chromosome C25404 Processing chromosome C25404 INFO [2014-07-02 14:59:24,219] [Preprocessor.java:241] [main] Processing chromosome C25414 Processing chromosome C25414 INFO [2014-07-02 14:59:24,227] [Preprocessor.java:241] [main] Processing chromosome C25418 Processing chromosome C25418 INFO [2014-07-02 14:59:24,251] [Preprocessor.java:241] [main] Processing chromosome C25420 Processing chromosome C25420 INFO [2014-07-02 14:59:24,273] [Preprocessor.java:241] [main] Processing chromosome C25424 Processing chromosome C25424 INFO [2014-07-02 14:59:24,301] [Preprocessor.java:241] [main] Processing chromosome C2543 Processing chromosome C2543 INFO [2014-07-02 14:59:24,361] [Preprocessor.java:241] [main] Processing chromosome C25434 Processing chromosome C25434 INFO [2014-07-02 14:59:24,379] [Preprocessor.java:241] [main] Processing chromosome C25444 Processing chromosome C25444 INFO [2014-07-02 14:59:24,384] [Preprocessor.java:241] [main] Processing chromosome C25448 Processing chromosome C25448 INFO [2014-07-02 14:59:24,416] [Preprocessor.java:241] [main] Processing chromosome C2545 Processing chromosome C2545 INFO [2014-07-02 14:59:24,523] [Preprocessor.java:241] [main] Processing chromosome C25452 Processing chromosome C25452 INFO [2014-07-02 14:59:24,531] [Preprocessor.java:241] [main] Processing chromosome C25456 Processing chromosome C25456 INFO [2014-07-02 14:59:24,544] [Preprocessor.java:241] [main] Processing chromosome C25466 Processing chromosome C25466 INFO [2014-07-02 14:59:24,562] [Preprocessor.java:241] [main] Processing chromosome C25468 Processing chromosome C25468 INFO [2014-07-02 14:59:24,594] [Preprocessor.java:241] [main] Processing chromosome C25470 Processing chromosome C25470 INFO [2014-07-02 14:59:24,599] [Preprocessor.java:241] [main] Processing chromosome C25480 Processing chromosome C25480 INFO [2014-07-02 14:59:24,605] [Preprocessor.java:241] [main] Processing chromosome C25494 Processing chromosome C25494 INFO [2014-07-02 14:59:24,633] [Preprocessor.java:241] [main] Processing chromosome C25496 Processing chromosome C25496 INFO [2014-07-02 14:59:24,643] [Preprocessor.java:241] [main] Processing chromosome C25498 Processing chromosome C25498 INFO [2014-07-02 14:59:24,679] [Preprocessor.java:241] [main] Processing chromosome C25504 Processing chromosome C25504 INFO [2014-07-02 14:59:24,719] [Preprocessor.java:241] [main] Processing chromosome C25528 Processing chromosome C25528 INFO [2014-07-02 14:59:24,768] [Preprocessor.java:241] [main] Processing chromosome C25540 Processing chromosome C25540 INFO [2014-07-02 14:59:24,780] [Preprocessor.java:241] [main] Processing chromosome C25542 Processing chromosome C25542 INFO [2014-07-02 14:59:24,789] [Preprocessor.java:241] [main] Processing chromosome C25544 Processing chromosome C25544 INFO [2014-07-02 14:59:24,803] [Preprocessor.java:241] [main] Processing chromosome C25546 Processing chromosome C25546 INFO [2014-07-02 14:59:24,824] [Preprocessor.java:241] [main] Processing chromosome C25550 Processing chromosome C25550 INFO [2014-07-02 14:59:24,875] [Preprocessor.java:241] [main] Processing chromosome C25556 Processing chromosome C25556 INFO [2014-07-02 14:59:24,881] [Preprocessor.java:241] [main] Processing chromosome C25558 Processing chromosome C25558 INFO [2014-07-02 14:59:24,910] [Preprocessor.java:241] [main] Processing chromosome C25564 Processing chromosome C25564 INFO [2014-07-02 14:59:24,919] [Preprocessor.java:241] [main] Processing chromosome C25572 Processing chromosome C25572 INFO [2014-07-02 14:59:24,928] [Preprocessor.java:241] [main] Processing chromosome C25580 Processing chromosome C25580 INFO [2014-07-02 14:59:24,963] [Preprocessor.java:241] [main] Processing chromosome C25592 Processing chromosome C25592 INFO [2014-07-02 14:59:24,980] [Preprocessor.java:241] [main] Processing chromosome C25596 Processing chromosome C25596 INFO [2014-07-02 14:59:24,985] [Preprocessor.java:241] [main] Processing chromosome C25612 Processing chromosome C25612 INFO [2014-07-02 14:59:24,995] [Preprocessor.java:241] [main] Processing chromosome C25620 Processing chromosome C25620 INFO [2014-07-02 14:59:25,025] [Preprocessor.java:241] [main] Processing chromosome C25630 Processing chromosome C25630 INFO [2014-07-02 14:59:25,049] [Preprocessor.java:241] [main] Processing chromosome C25634 Processing chromosome C25634 INFO [2014-07-02 14:59:25,086] [Preprocessor.java:241] [main] Processing chromosome C25642 Processing chromosome C25642 INFO [2014-07-02 14:59:25,093] [Preprocessor.java:241] [main] Processing chromosome C25644 Processing chromosome C25644 INFO [2014-07-02 14:59:25,213] [Preprocessor.java:241] [main] Processing chromosome C25648 Processing chromosome C25648 INFO [2014-07-02 14:59:25,238] [Preprocessor.java:241] [main] Processing chromosome C25652 Processing chromosome C25652 INFO [2014-07-02 14:59:25,241] [Preprocessor.java:241] [main] Processing chromosome C25654 Processing chromosome C25654 INFO [2014-07-02 14:59:25,264] [Preprocessor.java:241] [main] Processing chromosome C25662 Processing chromosome C25662 INFO [2014-07-02 14:59:25,271] [Preprocessor.java:241] [main] Processing chromosome C25670 Processing chromosome C25670 INFO [2014-07-02 14:59:25,281] [Preprocessor.java:241] [main] Processing chromosome C25676 Processing chromosome C25676 INFO [2014-07-02 14:59:25,291] [Preprocessor.java:241] [main] Processing chromosome C25678 Processing chromosome C25678 INFO [2014-07-02 14:59:25,303] [Preprocessor.java:241] [main] Processing chromosome C25698 Processing chromosome C25698 INFO [2014-07-02 14:59:25,355] [Preprocessor.java:241] [main] Processing chromosome C25702 Processing chromosome C25702 INFO [2014-07-02 14:59:25,365] [Preprocessor.java:241] [main] Processing chromosome C25706 Processing chromosome C25706 INFO [2014-07-02 14:59:25,379] [Preprocessor.java:241] [main] Processing chromosome C25708 Processing chromosome C25708 INFO [2014-07-02 14:59:25,386] [Preprocessor.java:241] [main] Processing chromosome C2571 Processing chromosome C2571 INFO [2014-07-02 14:59:25,424] [Preprocessor.java:241] [main] Processing chromosome C25722 Processing chromosome C25722 INFO [2014-07-02 14:59:25,507] [Preprocessor.java:241] [main] Processing chromosome C25730 Processing chromosome C25730 INFO [2014-07-02 14:59:25,513] [Preprocessor.java:241] [main] Processing chromosome C25734 Processing chromosome C25734 INFO [2014-07-02 14:59:25,563] [Preprocessor.java:241] [main] Processing chromosome C25740 Processing chromosome C25740 INFO [2014-07-02 14:59:25,614] [Preprocessor.java:241] [main] Processing chromosome C25744 Processing chromosome C25744 INFO [2014-07-02 14:59:25,657] [Preprocessor.java:241] [main] Processing chromosome C25750 Processing chromosome C25750 INFO [2014-07-02 14:59:25,667] [Preprocessor.java:241] [main] Processing chromosome C25752 Processing chromosome C25752 INFO [2014-07-02 14:59:25,692] [Preprocessor.java:241] [main] Processing chromosome C25756 Processing chromosome C25756 INFO [2014-07-02 14:59:25,715] [Preprocessor.java:241] [main] Processing chromosome C25758 Processing chromosome C25758 INFO [2014-07-02 14:59:25,735] [Preprocessor.java:241] [main] Processing chromosome C25762 Processing chromosome C25762 INFO [2014-07-02 14:59:25,752] [Preprocessor.java:241] [main] Processing chromosome C25766 Processing chromosome C25766 INFO [2014-07-02 14:59:25,756] [Preprocessor.java:241] [main] Processing chromosome C25778 Processing chromosome C25778 INFO [2014-07-02 14:59:25,787] [Preprocessor.java:241] [main] Processing chromosome C25792 Processing chromosome C25792 INFO [2014-07-02 14:59:25,820] [Preprocessor.java:241] [main] Processing chromosome C25804 Processing chromosome C25804 INFO [2014-07-02 14:59:25,850] [Preprocessor.java:241] [main] Processing chromosome C25806 Processing chromosome C25806 INFO [2014-07-02 14:59:25,854] [Preprocessor.java:241] [main] Processing chromosome C25818 Processing chromosome C25818 INFO [2014-07-02 14:59:25,879] [Preprocessor.java:241] [main] Processing chromosome C25820 Processing chromosome C25820 INFO [2014-07-02 14:59:25,888] [Preprocessor.java:241] [main] Processing chromosome C25822 Processing chromosome C25822 INFO [2014-07-02 14:59:25,941] [Preprocessor.java:241] [main] Processing chromosome C25826 Processing chromosome C25826 INFO [2014-07-02 14:59:25,990] [Preprocessor.java:241] [main] Processing chromosome C25828 Processing chromosome C25828 INFO [2014-07-02 14:59:26,009] [Preprocessor.java:241] [main] Processing chromosome C25832 Processing chromosome C25832 INFO [2014-07-02 14:59:26,014] [Preprocessor.java:241] [main] Processing chromosome C25834 Processing chromosome C25834 INFO [2014-07-02 14:59:26,062] [Preprocessor.java:241] [main] Processing chromosome C25838 Processing chromosome C25838 INFO [2014-07-02 14:59:26,083] [Preprocessor.java:241] [main] Processing chromosome C25850 Processing chromosome C25850 INFO [2014-07-02 14:59:26,086] [Preprocessor.java:241] [main] Processing chromosome C25858 Processing chromosome C25858 INFO [2014-07-02 14:59:26,097] [Preprocessor.java:241] [main] Processing chromosome C25864 Processing chromosome C25864 INFO [2014-07-02 14:59:26,131] [Preprocessor.java:241] [main] Processing chromosome C25866 Processing chromosome C25866 INFO [2014-07-02 14:59:26,150] [Preprocessor.java:241] [main] Processing chromosome C25876 Processing chromosome C25876 INFO [2014-07-02 14:59:26,185] [Preprocessor.java:241] [main] Processing chromosome C25882 Processing chromosome C25882 INFO [2014-07-02 14:59:26,213] [Preprocessor.java:241] [main] Processing chromosome C25896 Processing chromosome C25896 INFO [2014-07-02 14:59:26,268] [Preprocessor.java:241] [main] Processing chromosome C25898 Processing chromosome C25898 INFO [2014-07-02 14:59:26,306] [Preprocessor.java:241] [main] Processing chromosome C25912 Processing chromosome C25912 INFO [2014-07-02 14:59:26,342] [Preprocessor.java:241] [main] Processing chromosome C25928 Processing chromosome C25928 INFO [2014-07-02 14:59:26,385] [Preprocessor.java:241] [main] Processing chromosome C25932 Processing chromosome C25932 INFO [2014-07-02 14:59:26,447] [Preprocessor.java:241] [main] Processing chromosome C25938 Processing chromosome C25938 INFO [2014-07-02 14:59:26,451] [Preprocessor.java:241] [main] Processing chromosome C25940 Processing chromosome C25940 INFO [2014-07-02 14:59:26,520] [Preprocessor.java:241] [main] Processing chromosome C25946 Processing chromosome C25946 INFO [2014-07-02 14:59:26,532] [Preprocessor.java:241] [main] Processing chromosome C25954 Processing chromosome C25954 INFO [2014-07-02 14:59:26,591] [Preprocessor.java:241] [main] Processing chromosome C25962 Processing chromosome C25962 INFO [2014-07-02 14:59:26,603] [Preprocessor.java:241] [main] Processing chromosome C25966 Processing chromosome C25966 INFO [2014-07-02 14:59:26,656] [Preprocessor.java:241] [main] Processing chromosome C25968 Processing chromosome C25968 INFO [2014-07-02 14:59:26,678] [Preprocessor.java:241] [main] Processing chromosome C25970 Processing chromosome C25970 INFO [2014-07-02 14:59:26,704] [Preprocessor.java:241] [main] Processing chromosome C25972 Processing chromosome C25972 INFO [2014-07-02 14:59:26,734] [Preprocessor.java:241] [main] Processing chromosome C25980 Processing chromosome C25980 INFO [2014-07-02 14:59:26,795] [Preprocessor.java:241] [main] Processing chromosome C25990 Processing chromosome C25990 INFO [2014-07-02 14:59:26,839] [Preprocessor.java:241] [main] Processing chromosome C25998 Processing chromosome C25998 INFO [2014-07-02 14:59:26,881] [Preprocessor.java:241] [main] Processing chromosome C26002 Processing chromosome C26002 INFO [2014-07-02 14:59:26,900] [Preprocessor.java:241] [main] Processing chromosome C26004 Processing chromosome C26004 INFO [2014-07-02 14:59:26,934] [Preprocessor.java:241] [main] Processing chromosome C26016 Processing chromosome C26016 INFO [2014-07-02 14:59:26,941] [Preprocessor.java:241] [main] Processing chromosome C26018 Processing chromosome C26018 INFO [2014-07-02 14:59:26,957] [Preprocessor.java:241] [main] Processing chromosome C26032 Processing chromosome C26032 INFO [2014-07-02 14:59:27,013] [Preprocessor.java:241] [main] Processing chromosome C26040 Processing chromosome C26040 INFO [2014-07-02 14:59:27,027] [Preprocessor.java:241] [main] Processing chromosome C26054 Processing chromosome C26054 INFO [2014-07-02 14:59:27,034] [Preprocessor.java:241] [main] Processing chromosome C26064 Processing chromosome C26064 INFO [2014-07-02 14:59:27,042] [Preprocessor.java:241] [main] Processing chromosome C26066 Processing chromosome C26066 INFO [2014-07-02 14:59:27,075] [Preprocessor.java:241] [main] Processing chromosome C26070 Processing chromosome C26070 INFO [2014-07-02 14:59:27,083] [Preprocessor.java:241] [main] Processing chromosome C26078 Processing chromosome C26078 INFO [2014-07-02 14:59:27,129] [Preprocessor.java:241] [main] Processing chromosome C26082 Processing chromosome C26082 INFO [2014-07-02 14:59:27,141] [Preprocessor.java:241] [main] Processing chromosome C26084 Processing chromosome C26084 INFO [2014-07-02 14:59:27,170] [Preprocessor.java:241] [main] Processing chromosome C26088 Processing chromosome C26088 INFO [2014-07-02 14:59:27,176] [Preprocessor.java:241] [main] Processing chromosome C26094 Processing chromosome C26094 INFO [2014-07-02 14:59:27,181] [Preprocessor.java:241] [main] Processing chromosome C26096 Processing chromosome C26096 INFO [2014-07-02 14:59:27,186] [Preprocessor.java:241] [main] Processing chromosome C26102 Processing chromosome C26102 INFO [2014-07-02 14:59:27,230] [Preprocessor.java:241] [main] Processing chromosome C26108 Processing chromosome C26108 INFO [2014-07-02 14:59:27,246] [Preprocessor.java:241] [main] Processing chromosome C26118 Processing chromosome C26118 INFO [2014-07-02 14:59:27,279] [Preprocessor.java:241] [main] Processing chromosome C26122 Processing chromosome C26122 INFO [2014-07-02 14:59:27,286] [Preprocessor.java:241] [main] Processing chromosome C26128 Processing chromosome C26128 INFO [2014-07-02 14:59:27,292] [Preprocessor.java:241] [main] Processing chromosome C26134 Processing chromosome C26134 INFO [2014-07-02 14:59:27,329] [Preprocessor.java:241] [main] Processing chromosome C26140 Processing chromosome C26140 INFO [2014-07-02 14:59:27,347] [Preprocessor.java:241] [main] Processing chromosome C26148 Processing chromosome C26148 INFO [2014-07-02 14:59:27,378] [Preprocessor.java:241] [main] Processing chromosome C26150 Processing chromosome C26150 INFO [2014-07-02 14:59:27,419] [Preprocessor.java:241] [main] Processing chromosome C26152 Processing chromosome C26152 INFO [2014-07-02 14:59:27,427] [Preprocessor.java:241] [main] Processing chromosome C26154 Processing chromosome C26154 INFO [2014-07-02 14:59:27,439] [Preprocessor.java:241] [main] Processing chromosome C26156 Processing chromosome C26156 INFO [2014-07-02 14:59:27,456] [Preprocessor.java:241] [main] Processing chromosome C26168 Processing chromosome C26168 INFO [2014-07-02 14:59:27,567] [Preprocessor.java:241] [main] Processing chromosome C26174 Processing chromosome C26174 INFO [2014-07-02 14:59:27,616] [Preprocessor.java:241] [main] Processing chromosome C26180 Processing chromosome C26180 INFO [2014-07-02 14:59:27,657] [Preprocessor.java:241] [main] Processing chromosome C26184 Processing chromosome C26184 INFO [2014-07-02 14:59:27,672] [Preprocessor.java:241] [main] Processing chromosome C26190 Processing chromosome C26190 INFO [2014-07-02 14:59:27,745] [Preprocessor.java:241] [main] Processing chromosome C26192 Processing chromosome C26192 INFO [2014-07-02 14:59:27,821] [Preprocessor.java:241] [main] Processing chromosome C26196 Processing chromosome C26196 INFO [2014-07-02 14:59:27,834] [Preprocessor.java:241] [main] Processing chromosome C26198 Processing chromosome C26198 INFO [2014-07-02 14:59:27,851] [Preprocessor.java:241] [main] Processing chromosome C26204 Processing chromosome C26204 INFO [2014-07-02 14:59:27,854] [Preprocessor.java:241] [main] Processing chromosome C26206 Processing chromosome C26206 INFO [2014-07-02 14:59:27,942] [Preprocessor.java:241] [main] Processing chromosome C26212 Processing chromosome C26212 INFO [2014-07-02 14:59:27,983] [Preprocessor.java:241] [main] Processing chromosome C26226 Processing chromosome C26226 INFO [2014-07-02 14:59:27,990] [Preprocessor.java:241] [main] Processing chromosome C26228 Processing chromosome C26228 INFO [2014-07-02 14:59:28,006] [Preprocessor.java:241] [main] Processing chromosome C26236 Processing chromosome C26236 INFO [2014-07-02 14:59:28,033] [Preprocessor.java:241] [main] Processing chromosome C26240 Processing chromosome C26240 INFO [2014-07-02 14:59:28,079] [Preprocessor.java:241] [main] Processing chromosome C26244 Processing chromosome C26244 INFO [2014-07-02 14:59:28,155] [Preprocessor.java:241] [main] Processing chromosome C26246 Processing chromosome C26246 INFO [2014-07-02 14:59:28,190] [Preprocessor.java:241] [main] Processing chromosome C26256 Processing chromosome C26256 INFO [2014-07-02 14:59:28,251] [Preprocessor.java:241] [main] Processing chromosome C26262 Processing chromosome C26262 INFO [2014-07-02 14:59:28,255] [Preprocessor.java:241] [main] Processing chromosome C26268 Processing chromosome C26268 INFO [2014-07-02 14:59:28,298] [Preprocessor.java:241] [main] Processing chromosome C26276 Processing chromosome C26276 INFO [2014-07-02 14:59:28,318] [Preprocessor.java:241] [main] Processing chromosome C26278 Processing chromosome C26278 INFO [2014-07-02 14:59:28,324] [Preprocessor.java:241] [main] Processing chromosome C26292 Processing chromosome C26292 INFO [2014-07-02 14:59:28,388] [Preprocessor.java:241] [main] Processing chromosome C26298 Processing chromosome C26298 INFO [2014-07-02 14:59:28,398] [Preprocessor.java:241] [main] Processing chromosome C26302 Processing chromosome C26302 INFO [2014-07-02 14:59:28,402] [Preprocessor.java:241] [main] Processing chromosome C26306 Processing chromosome C26306 INFO [2014-07-02 14:59:28,462] [Preprocessor.java:241] [main] Processing chromosome C26312 Processing chromosome C26312 INFO [2014-07-02 14:59:28,485] [Preprocessor.java:241] [main] Processing chromosome C26314 Processing chromosome C26314 INFO [2014-07-02 14:59:28,488] [Preprocessor.java:241] [main] Processing chromosome C26318 Processing chromosome C26318 INFO [2014-07-02 14:59:28,526] [Preprocessor.java:241] [main] Processing chromosome C26320 Processing chromosome C26320 INFO [2014-07-02 14:59:28,542] [Preprocessor.java:241] [main] Processing chromosome C26336 Processing chromosome C26336 INFO [2014-07-02 14:59:28,579] [Preprocessor.java:241] [main] Processing chromosome C26338 Processing chromosome C26338 INFO [2014-07-02 14:59:28,591] [Preprocessor.java:241] [main] Processing chromosome C26342 Processing chromosome C26342 INFO [2014-07-02 14:59:28,620] [Preprocessor.java:241] [main] Processing chromosome C26344 Processing chromosome C26344 INFO [2014-07-02 14:59:28,623] [Preprocessor.java:241] [main] Processing chromosome C26354 Processing chromosome C26354 INFO [2014-07-02 14:59:28,647] [Preprocessor.java:241] [main] Processing chromosome C26356 Processing chromosome C26356 INFO [2014-07-02 14:59:28,651] [Preprocessor.java:241] [main] Processing chromosome C26364 Processing chromosome C26364 INFO [2014-07-02 14:59:28,710] [Preprocessor.java:241] [main] Processing chromosome C26368 Processing chromosome C26368 INFO [2014-07-02 14:59:28,713] [Preprocessor.java:241] [main] Processing chromosome C26370 Processing chromosome C26370 INFO [2014-07-02 14:59:28,724] [Preprocessor.java:241] [main] Processing chromosome C26374 Processing chromosome C26374 INFO [2014-07-02 14:59:28,739] [Preprocessor.java:241] [main] Processing chromosome C26384 Processing chromosome C26384 INFO [2014-07-02 14:59:28,755] [Preprocessor.java:241] [main] Processing chromosome C26390 Processing chromosome C26390 INFO [2014-07-02 14:59:28,785] [Preprocessor.java:241] [main] Processing chromosome C26402 Processing chromosome C26402 INFO [2014-07-02 14:59:28,824] [Preprocessor.java:241] [main] Processing chromosome C26416 Processing chromosome C26416 INFO [2014-07-02 14:59:28,835] [Preprocessor.java:241] [main] Processing chromosome C26422 Processing chromosome C26422 INFO [2014-07-02 14:59:28,868] [Preprocessor.java:241] [main] Processing chromosome C26430 Processing chromosome C26430 INFO [2014-07-02 14:59:28,883] [Preprocessor.java:241] [main] Processing chromosome C26440 Processing chromosome C26440 INFO [2014-07-02 14:59:28,892] [Preprocessor.java:241] [main] Processing chromosome C26448 Processing chromosome C26448 INFO [2014-07-02 14:59:28,906] [Preprocessor.java:241] [main] Processing chromosome C26452 Processing chromosome C26452 INFO [2014-07-02 14:59:28,944] [Preprocessor.java:241] [main] Processing chromosome C26454 Processing chromosome C26454 INFO [2014-07-02 14:59:29,000] [Preprocessor.java:241] [main] Processing chromosome C26458 Processing chromosome C26458 INFO [2014-07-02 14:59:29,012] [Preprocessor.java:241] [main] Processing chromosome C26460 Processing chromosome C26460 INFO [2014-07-02 14:59:29,023] [Preprocessor.java:241] [main] Processing chromosome C26466 Processing chromosome C26466 INFO [2014-07-02 14:59:29,038] [Preprocessor.java:241] [main] Processing chromosome C26472 Processing chromosome C26472 INFO [2014-07-02 14:59:29,044] [Preprocessor.java:241] [main] Processing chromosome C26474 Processing chromosome C26474 INFO [2014-07-02 14:59:29,049] [Preprocessor.java:241] [main] Processing chromosome C26482 Processing chromosome C26482 INFO [2014-07-02 14:59:29,066] [Preprocessor.java:241] [main] Processing chromosome C26486 Processing chromosome C26486 INFO [2014-07-02 14:59:29,099] [Preprocessor.java:241] [main] Processing chromosome C26492 Processing chromosome C26492 INFO [2014-07-02 14:59:29,119] [Preprocessor.java:241] [main] Processing chromosome C26500 Processing chromosome C26500 INFO [2014-07-02 14:59:29,145] [Preprocessor.java:241] [main] Processing chromosome C26506 Processing chromosome C26506 INFO [2014-07-02 14:59:29,179] [Preprocessor.java:241] [main] Processing chromosome C26508 Processing chromosome C26508 INFO [2014-07-02 14:59:29,202] [Preprocessor.java:241] [main] Processing chromosome C26516 Processing chromosome C26516 INFO [2014-07-02 14:59:29,239] [Preprocessor.java:241] [main] Processing chromosome C26518 Processing chromosome C26518 INFO [2014-07-02 14:59:29,243] [Preprocessor.java:241] [main] Processing chromosome C26526 Processing chromosome C26526 INFO [2014-07-02 14:59:29,272] [Preprocessor.java:241] [main] Processing chromosome C26532 Processing chromosome C26532 INFO [2014-07-02 14:59:29,294] [Preprocessor.java:241] [main] Processing chromosome C26534 Processing chromosome C26534 INFO [2014-07-02 14:59:29,315] [Preprocessor.java:241] [main] Processing chromosome C26536 Processing chromosome C26536 INFO [2014-07-02 14:59:29,357] [Preprocessor.java:241] [main] Processing chromosome C26550 Processing chromosome C26550 INFO [2014-07-02 14:59:29,402] [Preprocessor.java:241] [main] Processing chromosome C26552 Processing chromosome C26552 INFO [2014-07-02 14:59:29,417] [Preprocessor.java:241] [main] Processing chromosome C26556 Processing chromosome C26556 INFO [2014-07-02 14:59:29,420] [Preprocessor.java:241] [main] Processing chromosome C26562 Processing chromosome C26562 INFO [2014-07-02 14:59:29,425] [Preprocessor.java:241] [main] Processing chromosome C26566 Processing chromosome C26566 INFO [2014-07-02 14:59:29,432] [Preprocessor.java:241] [main] Processing chromosome C26568 Processing chromosome C26568 INFO [2014-07-02 14:59:29,478] [Preprocessor.java:241] [main] Processing chromosome C26570 Processing chromosome C26570 INFO [2014-07-02 14:59:29,503] [Preprocessor.java:241] [main] Processing chromosome C26574 Processing chromosome C26574 INFO [2014-07-02 14:59:29,507] [Preprocessor.java:241] [main] Processing chromosome C26578 Processing chromosome C26578 INFO [2014-07-02 14:59:29,517] [Preprocessor.java:241] [main] Processing chromosome C26582 Processing chromosome C26582 INFO [2014-07-02 14:59:29,519] [Preprocessor.java:241] [main] Processing chromosome C26584 Processing chromosome C26584 INFO [2014-07-02 14:59:29,545] [Preprocessor.java:241] [main] Processing chromosome C26602 Processing chromosome C26602 INFO [2014-07-02 14:59:29,562] [Preprocessor.java:241] [main] Processing chromosome C26612 Processing chromosome C26612 INFO [2014-07-02 14:59:29,572] [Preprocessor.java:241] [main] Processing chromosome C26614 Processing chromosome C26614 INFO [2014-07-02 14:59:29,583] [Preprocessor.java:241] [main] Processing chromosome C26624 Processing chromosome C26624 INFO [2014-07-02 14:59:29,600] [Preprocessor.java:241] [main] Processing chromosome C26626 Processing chromosome C26626 INFO [2014-07-02 14:59:29,628] [Preprocessor.java:241] [main] Processing chromosome C26628 Processing chromosome C26628 INFO [2014-07-02 14:59:29,643] [Preprocessor.java:241] [main] Processing chromosome C26640 Processing chromosome C26640 INFO [2014-07-02 14:59:29,652] [Preprocessor.java:241] [main] Processing chromosome C26646 Processing chromosome C26646 INFO [2014-07-02 14:59:29,660] [Preprocessor.java:241] [main] Processing chromosome C26654 Processing chromosome C26654 INFO [2014-07-02 14:59:29,689] [Preprocessor.java:241] [main] Processing chromosome C26660 Processing chromosome C26660 INFO [2014-07-02 14:59:29,698] [Preprocessor.java:241] [main] Processing chromosome C26674 Processing chromosome C26674 INFO [2014-07-02 14:59:29,701] [Preprocessor.java:241] [main] Processing chromosome C26684 Processing chromosome C26684 INFO [2014-07-02 14:59:29,723] [Preprocessor.java:241] [main] Processing chromosome C26688 Processing chromosome C26688 INFO [2014-07-02 14:59:29,735] [Preprocessor.java:241] [main] Processing chromosome C26690 Processing chromosome C26690 INFO [2014-07-02 14:59:29,768] [Preprocessor.java:241] [main] Processing chromosome C26692 Processing chromosome C26692 INFO [2014-07-02 14:59:29,785] [Preprocessor.java:241] [main] Processing chromosome C26708 Processing chromosome C26708 INFO [2014-07-02 14:59:29,791] [Preprocessor.java:241] [main] Processing chromosome C26712 Processing chromosome C26712 INFO [2014-07-02 14:59:29,797] [Preprocessor.java:241] [main] Processing chromosome C26726 Processing chromosome C26726 INFO [2014-07-02 14:59:29,817] [Preprocessor.java:241] [main] Processing chromosome C26728 Processing chromosome C26728 INFO [2014-07-02 14:59:29,832] [Preprocessor.java:241] [main] Processing chromosome C26738 Processing chromosome C26738 INFO [2014-07-02 14:59:29,854] [Preprocessor.java:241] [main] Processing chromosome C26740 Processing chromosome C26740 INFO [2014-07-02 14:59:29,878] [Preprocessor.java:241] [main] Processing chromosome C26742 Processing chromosome C26742 INFO [2014-07-02 14:59:29,904] [Preprocessor.java:241] [main] Processing chromosome C26762 Processing chromosome C26762 INFO [2014-07-02 14:59:29,919] [Preprocessor.java:241] [main] Processing chromosome C26768 Processing chromosome C26768 INFO [2014-07-02 14:59:29,921] [Preprocessor.java:241] [main] Processing chromosome C26774 Processing chromosome C26774 INFO [2014-07-02 14:59:29,936] [Preprocessor.java:241] [main] Processing chromosome C26784 Processing chromosome C26784 INFO [2014-07-02 14:59:29,952] [Preprocessor.java:241] [main] Processing chromosome C2681 Processing chromosome C2681 INFO [2014-07-02 14:59:29,985] [Preprocessor.java:241] [main] Processing chromosome C26812 Processing chromosome C26812 INFO [2014-07-02 14:59:30,068] [Preprocessor.java:241] [main] Processing chromosome C26820 Processing chromosome C26820 INFO [2014-07-02 14:59:30,118] [Preprocessor.java:241] [main] Processing chromosome C26824 Processing chromosome C26824 INFO [2014-07-02 14:59:30,154] [Preprocessor.java:241] [main] Processing chromosome C26828 Processing chromosome C26828 INFO [2014-07-02 14:59:30,163] [Preprocessor.java:241] [main] Processing chromosome C26838 Processing chromosome C26838 INFO [2014-07-02 14:59:30,171] [Preprocessor.java:241] [main] Processing chromosome C26844 Processing chromosome C26844 INFO [2014-07-02 14:59:30,213] [Preprocessor.java:241] [main] Processing chromosome C26852 Processing chromosome C26852 INFO [2014-07-02 14:59:30,217] [Preprocessor.java:241] [main] Processing chromosome C26860 Processing chromosome C26860 INFO [2014-07-02 14:59:30,229] [Preprocessor.java:241] [main] Processing chromosome C26862 Processing chromosome C26862 INFO [2014-07-02 14:59:30,260] [Preprocessor.java:241] [main] Processing chromosome C26866 Processing chromosome C26866 INFO [2014-07-02 14:59:30,279] [Preprocessor.java:241] [main] Processing chromosome C26872 Processing chromosome C26872 INFO [2014-07-02 14:59:30,287] [Preprocessor.java:241] [main] Processing chromosome C26878 Processing chromosome C26878 INFO [2014-07-02 14:59:30,291] [Preprocessor.java:241] [main] Processing chromosome C26888 Processing chromosome C26888 INFO [2014-07-02 14:59:30,298] [Preprocessor.java:241] [main] Processing chromosome C26890 Processing chromosome C26890 INFO [2014-07-02 14:59:30,329] [Preprocessor.java:241] [main] Processing chromosome C26900 Processing chromosome C26900 INFO [2014-07-02 14:59:30,333] [Preprocessor.java:241] [main] Processing chromosome C26920 Processing chromosome C26920 INFO [2014-07-02 14:59:30,341] [Preprocessor.java:241] [main] Processing chromosome C26932 Processing chromosome C26932 INFO [2014-07-02 14:59:30,363] [Preprocessor.java:241] [main] Processing chromosome C26934 Processing chromosome C26934 INFO [2014-07-02 14:59:30,385] [Preprocessor.java:241] [main] Processing chromosome C26936 Processing chromosome C26936 INFO [2014-07-02 14:59:30,393] [Preprocessor.java:241] [main] Processing chromosome C26938 Processing chromosome C26938 INFO [2014-07-02 14:59:30,445] [Preprocessor.java:241] [main] Processing chromosome C26942 Processing chromosome C26942 INFO [2014-07-02 14:59:30,483] [Preprocessor.java:241] [main] Processing chromosome C26948 Processing chromosome C26948 INFO [2014-07-02 14:59:30,504] [Preprocessor.java:241] [main] Processing chromosome C26950 Processing chromosome C26950 INFO [2014-07-02 14:59:30,535] [Preprocessor.java:241] [main] Processing chromosome C26958 Processing chromosome C26958 INFO [2014-07-02 14:59:30,542] [Preprocessor.java:241] [main] Processing chromosome C26960 Processing chromosome C26960 INFO [2014-07-02 14:59:30,551] [Preprocessor.java:241] [main] Processing chromosome C26966 Processing chromosome C26966 INFO [2014-07-02 14:59:30,599] [Preprocessor.java:241] [main] Processing chromosome C26976 Processing chromosome C26976 INFO [2014-07-02 14:59:30,634] [Preprocessor.java:241] [main] Processing chromosome C26978 Processing chromosome C26978 INFO [2014-07-02 14:59:30,648] [Preprocessor.java:241] [main] Processing chromosome C26980 Processing chromosome C26980 INFO [2014-07-02 14:59:30,654] [Preprocessor.java:241] [main] Processing chromosome C26982 Processing chromosome C26982 INFO [2014-07-02 14:59:30,673] [Preprocessor.java:241] [main] Processing chromosome C26992 Processing chromosome C26992 INFO [2014-07-02 14:59:30,678] [Preprocessor.java:241] [main] Processing chromosome C26998 Processing chromosome C26998 INFO [2014-07-02 14:59:30,681] [Preprocessor.java:241] [main] Processing chromosome C27016 Processing chromosome C27016 INFO [2014-07-02 14:59:30,737] [Preprocessor.java:241] [main] Processing chromosome C27020 Processing chromosome C27020 INFO [2014-07-02 14:59:30,753] [Preprocessor.java:241] [main] Processing chromosome C27026 Processing chromosome C27026 INFO [2014-07-02 14:59:30,767] [Preprocessor.java:241] [main] Processing chromosome C27038 Processing chromosome C27038 INFO [2014-07-02 14:59:30,778] [Preprocessor.java:241] [main] Processing chromosome C27052 Processing chromosome C27052 INFO [2014-07-02 14:59:30,788] [Preprocessor.java:241] [main] Processing chromosome C27054 Processing chromosome C27054 INFO [2014-07-02 14:59:30,799] [Preprocessor.java:241] [main] Processing chromosome C27058 Processing chromosome C27058 INFO [2014-07-02 14:59:30,809] [Preprocessor.java:241] [main] Processing chromosome C27066 Processing chromosome C27066 INFO [2014-07-02 14:59:30,829] [Preprocessor.java:241] [main] Processing chromosome C27086 Processing chromosome C27086 INFO [2014-07-02 14:59:30,838] [Preprocessor.java:241] [main] Processing chromosome C27092 Processing chromosome C27092 INFO [2014-07-02 14:59:30,846] [Preprocessor.java:241] [main] Processing chromosome C27100 Processing chromosome C27100 INFO [2014-07-02 14:59:30,852] [Preprocessor.java:241] [main] Processing chromosome C27102 Processing chromosome C27102 INFO [2014-07-02 14:59:30,863] [Preprocessor.java:241] [main] Processing chromosome C27106 Processing chromosome C27106 INFO [2014-07-02 14:59:30,883] [Preprocessor.java:241] [main] Processing chromosome C27116 Processing chromosome C27116 INFO [2014-07-02 14:59:30,908] [Preprocessor.java:241] [main] Processing chromosome C27118 Processing chromosome C27118 INFO [2014-07-02 14:59:30,929] [Preprocessor.java:241] [main] Processing chromosome C27132 Processing chromosome C27132 INFO [2014-07-02 14:59:30,959] [Preprocessor.java:241] [main] Processing chromosome C27154 Processing chromosome C27154 INFO [2014-07-02 14:59:30,969] [Preprocessor.java:241] [main] Processing chromosome C27158 Processing chromosome C27158 INFO [2014-07-02 14:59:30,971] [Preprocessor.java:241] [main] Processing chromosome C27160 Processing chromosome C27160 INFO [2014-07-02 14:59:30,975] [Preprocessor.java:241] [main] Processing chromosome C27162 Processing chromosome C27162 INFO [2014-07-02 14:59:30,997] [Preprocessor.java:241] [main] Processing chromosome C27168 Processing chromosome C27168 INFO [2014-07-02 14:59:31,033] [Preprocessor.java:241] [main] Processing chromosome C27176 Processing chromosome C27176 INFO [2014-07-02 14:59:31,040] [Preprocessor.java:241] [main] Processing chromosome C27178 Processing chromosome C27178 INFO [2014-07-02 14:59:31,067] [Preprocessor.java:241] [main] Processing chromosome C27196 Processing chromosome C27196 INFO [2014-07-02 14:59:31,072] [Preprocessor.java:241] [main] Processing chromosome C27210 Processing chromosome C27210 INFO [2014-07-02 14:59:31,089] [Preprocessor.java:241] [main] Processing chromosome C27218 Processing chromosome C27218 INFO [2014-07-02 14:59:31,137] [Preprocessor.java:241] [main] Processing chromosome C27242 Processing chromosome C27242 INFO [2014-07-02 14:59:31,185] [Preprocessor.java:241] [main] Processing chromosome C27244 Processing chromosome C27244 INFO [2014-07-02 14:59:31,200] [Preprocessor.java:241] [main] Processing chromosome C27252 Processing chromosome C27252 INFO [2014-07-02 14:59:31,202] [Preprocessor.java:241] [main] Processing chromosome C27258 Processing chromosome C27258 INFO [2014-07-02 14:59:31,209] [Preprocessor.java:241] [main] Processing chromosome C27268 Processing chromosome C27268 INFO [2014-07-02 14:59:31,235] [Preprocessor.java:241] [main] Processing chromosome C27272 Processing chromosome C27272 INFO [2014-07-02 14:59:31,238] [Preprocessor.java:241] [main] Processing chromosome C27276 Processing chromosome C27276 INFO [2014-07-02 14:59:31,274] [Preprocessor.java:241] [main] Processing chromosome C27282 Processing chromosome C27282 INFO [2014-07-02 14:59:31,291] [Preprocessor.java:241] [main] Processing chromosome C27284 Processing chromosome C27284 INFO [2014-07-02 14:59:31,313] [Preprocessor.java:241] [main] Processing chromosome C27296 Processing chromosome C27296 INFO [2014-07-02 14:59:31,321] [Preprocessor.java:241] [main] Processing chromosome C27304 Processing chromosome C27304 INFO [2014-07-02 14:59:31,323] [Preprocessor.java:241] [main] Processing chromosome C27310 Processing chromosome C27310 INFO [2014-07-02 14:59:31,336] [Preprocessor.java:241] [main] Processing chromosome C27314 Processing chromosome C27314 INFO [2014-07-02 14:59:31,356] [Preprocessor.java:241] [main] Processing chromosome C27320 Processing chromosome C27320 INFO [2014-07-02 14:59:31,362] [Preprocessor.java:241] [main] Processing chromosome C27342 Processing chromosome C27342 INFO [2014-07-02 14:59:31,372] [Preprocessor.java:241] [main] Processing chromosome C27356 Processing chromosome C27356 INFO [2014-07-02 14:59:31,383] [Preprocessor.java:241] [main] Processing chromosome C27358 Processing chromosome C27358 INFO [2014-07-02 14:59:31,389] [Preprocessor.java:241] [main] Processing chromosome C27360 Processing chromosome C27360 INFO [2014-07-02 14:59:31,424] [Preprocessor.java:241] [main] Processing chromosome C27364 Processing chromosome C27364 INFO [2014-07-02 14:59:31,439] [Preprocessor.java:241] [main] Processing chromosome C27378 Processing chromosome C27378 INFO [2014-07-02 14:59:31,452] [Preprocessor.java:241] [main] Processing chromosome C27386 Processing chromosome C27386 INFO [2014-07-02 14:59:31,466] [Preprocessor.java:241] [main] Processing chromosome C27394 Processing chromosome C27394 INFO [2014-07-02 14:59:31,477] [Preprocessor.java:241] [main] Processing chromosome C27400 Processing chromosome C27400 INFO [2014-07-02 14:59:31,487] [Preprocessor.java:241] [main] Processing chromosome C27410 Processing chromosome C27410 INFO [2014-07-02 14:59:31,509] [Preprocessor.java:241] [main] Processing chromosome C27412 Processing chromosome C27412 INFO [2014-07-02 14:59:31,513] [Preprocessor.java:241] [main] Processing chromosome C27428 Processing chromosome C27428 INFO [2014-07-02 14:59:31,528] [Preprocessor.java:241] [main] Processing chromosome C2743 Processing chromosome C2743 INFO [2014-07-02 14:59:31,561] [Preprocessor.java:241] [main] Processing chromosome C27432 Processing chromosome C27432 INFO [2014-07-02 14:59:31,590] [Preprocessor.java:241] [main] Processing chromosome C27444 Processing chromosome C27444 INFO [2014-07-02 14:59:31,620] [Preprocessor.java:241] [main] Processing chromosome C27446 Processing chromosome C27446 INFO [2014-07-02 14:59:31,637] [Preprocessor.java:241] [main] Processing chromosome C27452 Processing chromosome C27452 INFO [2014-07-02 14:59:31,651] [Preprocessor.java:241] [main] Processing chromosome C27456 Processing chromosome C27456 INFO [2014-07-02 14:59:31,655] [Preprocessor.java:241] [main] Processing chromosome C27460 Processing chromosome C27460 INFO [2014-07-02 14:59:31,663] [Preprocessor.java:241] [main] Processing chromosome C27462 Processing chromosome C27462 INFO [2014-07-02 14:59:31,670] [Preprocessor.java:241] [main] Processing chromosome C2747 Processing chromosome C2747 INFO [2014-07-02 14:59:31,705] [Preprocessor.java:241] [main] Processing chromosome C27478 Processing chromosome C27478 INFO [2014-07-02 14:59:31,746] [Preprocessor.java:241] [main] Processing chromosome C27480 Processing chromosome C27480 INFO [2014-07-02 14:59:31,754] [Preprocessor.java:241] [main] Processing chromosome C27482 Processing chromosome C27482 INFO [2014-07-02 14:59:31,760] [Preprocessor.java:241] [main] Processing chromosome C27500 Processing chromosome C27500 INFO [2014-07-02 14:59:31,780] [Preprocessor.java:241] [main] Processing chromosome C27510 Processing chromosome C27510 INFO [2014-07-02 14:59:31,790] [Preprocessor.java:241] [main] Processing chromosome C27526 Processing chromosome C27526 INFO [2014-07-02 14:59:31,800] [Preprocessor.java:241] [main] Processing chromosome C27530 Processing chromosome C27530 INFO [2014-07-02 14:59:31,822] [Preprocessor.java:241] [main] Processing chromosome C27552 Processing chromosome C27552 INFO [2014-07-02 14:59:31,829] [Preprocessor.java:241] [main] Processing chromosome C27556 Processing chromosome C27556 INFO [2014-07-02 14:59:31,856] [Preprocessor.java:241] [main] Processing chromosome C27558 Processing chromosome C27558 INFO [2014-07-02 14:59:31,861] [Preprocessor.java:241] [main] Processing chromosome C27566 Processing chromosome C27566 INFO [2014-07-02 14:59:31,909] [Preprocessor.java:241] [main] Processing chromosome C27570 Processing chromosome C27570 INFO [2014-07-02 14:59:31,920] [Preprocessor.java:241] [main] Processing chromosome C27578 Processing chromosome C27578 INFO [2014-07-02 14:59:31,929] [Preprocessor.java:241] [main] Processing chromosome C2761 Processing chromosome C2761 INFO [2014-07-02 14:59:31,989] [Preprocessor.java:241] [main] Processing chromosome C27612 Processing chromosome C27612 INFO [2014-07-02 14:59:31,999] [Preprocessor.java:241] [main] Processing chromosome C27614 Processing chromosome C27614 INFO [2014-07-02 14:59:32,024] [Preprocessor.java:241] [main] Processing chromosome C27630 Processing chromosome C27630 INFO [2014-07-02 14:59:32,037] [Preprocessor.java:241] [main] Processing chromosome C27638 Processing chromosome C27638 INFO [2014-07-02 14:59:32,051] [Preprocessor.java:241] [main] Processing chromosome C27640 Processing chromosome C27640 INFO [2014-07-02 14:59:32,061] [Preprocessor.java:241] [main] Processing chromosome C27644 Processing chromosome C27644 INFO [2014-07-02 14:59:32,102] [Preprocessor.java:241] [main] Processing chromosome C2765 Processing chromosome C2765 INFO [2014-07-02 14:59:32,163] [Preprocessor.java:241] [main] Processing chromosome C27668 Processing chromosome C27668 INFO [2014-07-02 14:59:32,186] [Preprocessor.java:241] [main] Processing chromosome C27688 Processing chromosome C27688 INFO [2014-07-02 14:59:32,198] [Preprocessor.java:241] [main] Processing chromosome C27692 Processing chromosome C27692 INFO [2014-07-02 14:59:32,206] [Preprocessor.java:241] [main] Processing chromosome C27694 Processing chromosome C27694 INFO [2014-07-02 14:59:32,218] [Preprocessor.java:241] [main] Processing chromosome C27696 Processing chromosome C27696 INFO [2014-07-02 14:59:32,250] [Preprocessor.java:241] [main] Processing chromosome C27698 Processing chromosome C27698 INFO [2014-07-02 14:59:32,293] [Preprocessor.java:241] [main] Processing chromosome C27700 Processing chromosome C27700 INFO [2014-07-02 14:59:32,303] [Preprocessor.java:241] [main] Processing chromosome C27706 Processing chromosome C27706 INFO [2014-07-02 14:59:32,306] [Preprocessor.java:241] [main] Processing chromosome C27712 Processing chromosome C27712 INFO [2014-07-02 14:59:32,315] [Preprocessor.java:241] [main] Processing chromosome C27718 Processing chromosome C27718 INFO [2014-07-02 14:59:32,356] [Preprocessor.java:241] [main] Processing chromosome C27722 Processing chromosome C27722 INFO [2014-07-02 14:59:32,363] [Preprocessor.java:241] [main] Processing chromosome C27726 Processing chromosome C27726 INFO [2014-07-02 14:59:32,368] [Preprocessor.java:241] [main] Processing chromosome C27732 Processing chromosome C27732 INFO [2014-07-02 14:59:32,382] [Preprocessor.java:241] [main] Processing chromosome C27742 Processing chromosome C27742 INFO [2014-07-02 14:59:32,417] [Preprocessor.java:241] [main] Processing chromosome C27746 Processing chromosome C27746 INFO [2014-07-02 14:59:32,454] [Preprocessor.java:241] [main] Processing chromosome C27748 Processing chromosome C27748 INFO [2014-07-02 14:59:32,468] [Preprocessor.java:241] [main] Processing chromosome C27754 Processing chromosome C27754 INFO [2014-07-02 14:59:32,483] [Preprocessor.java:241] [main] Processing chromosome C27762 Processing chromosome C27762 INFO [2014-07-02 14:59:38,518] [Preprocessor.java:241] [main] Processing chromosome C27764 Processing chromosome C27764 INFO [2014-07-02 14:59:38,522] [Preprocessor.java:241] [main] Processing chromosome C27770 Processing chromosome C27770 INFO [2014-07-02 14:59:38,544] [Preprocessor.java:241] [main] Processing chromosome C27784 Processing chromosome C27784 INFO [2014-07-02 14:59:38,604] [Preprocessor.java:241] [main] Processing chromosome C27792 Processing chromosome C27792 INFO [2014-07-02 14:59:38,622] [Preprocessor.java:241] [main] Processing chromosome C27794 Processing chromosome C27794 INFO [2014-07-02 14:59:38,624] [Preprocessor.java:241] [main] Processing chromosome C27812 Processing chromosome C27812 INFO [2014-07-02 14:59:38,673] [Preprocessor.java:241] [main] Processing chromosome C27816 Processing chromosome C27816 INFO [2014-07-02 14:59:38,702] [Preprocessor.java:241] [main] Processing chromosome C27830 Processing chromosome C27830 INFO [2014-07-02 14:59:38,713] [Preprocessor.java:241] [main] Processing chromosome C27850 Processing chromosome C27850 INFO [2014-07-02 14:59:38,738] [Preprocessor.java:241] [main] Processing chromosome C27874 Processing chromosome C27874 INFO [2014-07-02 14:59:38,748] [Preprocessor.java:241] [main] Processing chromosome C27882 Processing chromosome C27882 INFO [2014-07-02 14:59:38,751] [Preprocessor.java:241] [main] Processing chromosome C2789 Processing chromosome C2789 INFO [2014-07-02 14:59:38,820] [Preprocessor.java:241] [main] Processing chromosome C27890 Processing chromosome C27890 INFO [2014-07-02 14:59:38,831] [Preprocessor.java:241] [main] Processing chromosome C27902 Processing chromosome C27902 INFO [2014-07-02 14:59:38,836] [Preprocessor.java:241] [main] Processing chromosome C27928 Processing chromosome C27928 INFO [2014-07-02 14:59:38,863] [Preprocessor.java:241] [main] Processing chromosome C27944 Processing chromosome C27944 INFO [2014-07-02 14:59:38,877] [Preprocessor.java:241] [main] Processing chromosome C27954 Processing chromosome C27954 INFO [2014-07-02 14:59:38,909] [Preprocessor.java:241] [main] Processing chromosome C27962 Processing chromosome C27962 INFO [2014-07-02 14:59:38,938] [Preprocessor.java:241] [main] Processing chromosome C27964 Processing chromosome C27964 INFO [2014-07-02 14:59:38,959] [Preprocessor.java:241] [main] Processing chromosome C27966 Processing chromosome C27966 INFO [2014-07-02 14:59:38,971] [Preprocessor.java:241] [main] Processing chromosome C2797 Processing chromosome C2797 INFO [2014-07-02 14:59:39,005] [Preprocessor.java:241] [main] Processing chromosome C27984 Processing chromosome C27984 INFO [2014-07-02 14:59:39,032] [Preprocessor.java:241] [main] Processing chromosome C28002 Processing chromosome C28002 INFO [2014-07-02 14:59:39,046] [Preprocessor.java:241] [main] Processing chromosome C28004 Processing chromosome C28004 INFO [2014-07-02 14:59:39,066] [Preprocessor.java:241] [main] Processing chromosome C28006 Processing chromosome C28006 INFO [2014-07-02 14:59:39,075] [Preprocessor.java:241] [main] Processing chromosome C28016 Processing chromosome C28016 INFO [2014-07-02 14:59:39,090] [Preprocessor.java:241] [main] Processing chromosome C28026 Processing chromosome C28026 INFO [2014-07-02 14:59:39,100] [Preprocessor.java:241] [main] Processing chromosome C28030 Processing chromosome C28030 INFO [2014-07-02 14:59:39,103] [Preprocessor.java:241] [main] Processing chromosome C28036 Processing chromosome C28036 INFO [2014-07-02 14:59:39,128] [Preprocessor.java:241] [main] Processing chromosome C28044 Processing chromosome C28044 INFO [2014-07-02 14:59:39,162] [Preprocessor.java:241] [main] Processing chromosome C28062 Processing chromosome C28062 INFO [2014-07-02 14:59:39,199] [Preprocessor.java:241] [main] Processing chromosome C28064 Processing chromosome C28064 INFO [2014-07-02 14:59:39,257] [Preprocessor.java:241] [main] Processing chromosome C28070 Processing chromosome C28070 INFO [2014-07-02 14:59:39,297] [Preprocessor.java:241] [main] Processing chromosome C28076 Processing chromosome C28076 INFO [2014-07-02 14:59:39,301] [Preprocessor.java:241] [main] Processing chromosome C28082 Processing chromosome C28082 INFO [2014-07-02 14:59:39,320] [Preprocessor.java:241] [main] Processing chromosome C28090 Processing chromosome C28090 INFO [2014-07-02 14:59:39,350] [Preprocessor.java:241] [main] Processing chromosome C28108 Processing chromosome C28108 INFO [2014-07-02 14:59:39,372] [Preprocessor.java:241] [main] Processing chromosome C28120 Processing chromosome C28120 INFO [2014-07-02 14:59:39,385] [Preprocessor.java:241] [main] Processing chromosome C28132 Processing chromosome C28132 INFO [2014-07-02 14:59:39,404] [Preprocessor.java:241] [main] Processing chromosome C28144 Processing chromosome C28144 INFO [2014-07-02 14:59:39,424] [Preprocessor.java:241] [main] Processing chromosome C28150 Processing chromosome C28150 INFO [2014-07-02 14:59:39,442] [Preprocessor.java:241] [main] Processing chromosome C28152 Processing chromosome C28152 INFO [2014-07-02 14:59:39,459] [Preprocessor.java:241] [main] Processing chromosome C28168 Processing chromosome C28168 INFO [2014-07-02 14:59:39,478] [Preprocessor.java:241] [main] Processing chromosome C28170 Processing chromosome C28170 INFO [2014-07-02 14:59:39,486] [Preprocessor.java:241] [main] Processing chromosome C28184 Processing chromosome C28184 INFO [2014-07-02 14:59:39,508] [Preprocessor.java:241] [main] Processing chromosome C28190 Processing chromosome C28190 INFO [2014-07-02 14:59:39,531] [Preprocessor.java:241] [main] Processing chromosome C28194 Processing chromosome C28194 INFO [2014-07-02 14:59:39,543] [Preprocessor.java:241] [main] Processing chromosome C28206 Processing chromosome C28206 INFO [2014-07-02 14:59:39,564] [Preprocessor.java:241] [main] Processing chromosome C28216 Processing chromosome C28216 INFO [2014-07-02 14:59:39,600] [Preprocessor.java:241] [main] Processing chromosome C28218 Processing chromosome C28218 INFO [2014-07-02 14:59:39,636] [Preprocessor.java:241] [main] Processing chromosome C28224 Processing chromosome C28224 INFO [2014-07-02 14:59:39,646] [Preprocessor.java:241] [main] Processing chromosome C28230 Processing chromosome C28230 INFO [2014-07-02 14:59:39,664] [Preprocessor.java:241] [main] Processing chromosome C28242 Processing chromosome C28242 INFO [2014-07-02 14:59:39,682] [Preprocessor.java:241] [main] Processing chromosome C28246 Processing chromosome C28246 INFO [2014-07-02 14:59:39,704] [Preprocessor.java:241] [main] Processing chromosome C28254 Processing chromosome C28254 INFO [2014-07-02 14:59:39,744] [Preprocessor.java:241] [main] Processing chromosome C28256 Processing chromosome C28256 INFO [2014-07-02 14:59:39,750] [Preprocessor.java:241] [main] Processing chromosome C28258 Processing chromosome C28258 INFO [2014-07-02 14:59:39,766] [Preprocessor.java:241] [main] Processing chromosome C28260 Processing chromosome C28260 INFO [2014-07-02 14:59:39,799] [Preprocessor.java:241] [main] Processing chromosome C28272 Processing chromosome C28272 INFO [2014-07-02 14:59:39,815] [Preprocessor.java:241] [main] Processing chromosome C28282 Processing chromosome C28282 INFO [2014-07-02 14:59:39,826] [Preprocessor.java:241] [main] Processing chromosome C28286 Processing chromosome C28286 INFO [2014-07-02 14:59:39,848] [Preprocessor.java:241] [main] Processing chromosome C28296 Processing chromosome C28296 INFO [2014-07-02 14:59:39,883] [Preprocessor.java:241] [main] Processing chromosome C28298 Processing chromosome C28298 INFO [2014-07-02 14:59:39,900] [Preprocessor.java:241] [main] Processing chromosome C28306 Processing chromosome C28306 INFO [2014-07-02 14:59:39,928] [Preprocessor.java:241] [main] Processing chromosome C28310 Processing chromosome C28310 INFO [2014-07-02 14:59:39,959] [Preprocessor.java:241] [main] Processing chromosome C28316 Processing chromosome C28316 INFO [2014-07-02 14:59:39,962] [Preprocessor.java:241] [main] Processing chromosome C28328 Processing chromosome C28328 INFO [2014-07-02 14:59:39,969] [Preprocessor.java:241] [main] Processing chromosome C28340 Processing chromosome C28340 INFO [2014-07-02 14:59:39,981] [Preprocessor.java:241] [main] Processing chromosome C28348 Processing chromosome C28348 INFO [2014-07-02 14:59:39,999] [Preprocessor.java:241] [main] Processing chromosome C28350 Processing chromosome C28350 INFO [2014-07-02 14:59:40,010] [Preprocessor.java:241] [main] Processing chromosome C28362 Processing chromosome C28362 INFO [2014-07-02 14:59:40,033] [Preprocessor.java:241] [main] Processing chromosome C28364 Processing chromosome C28364 INFO [2014-07-02 14:59:40,045] [Preprocessor.java:241] [main] Processing chromosome C28366 Processing chromosome C28366 INFO [2014-07-02 14:59:40,050] [Preprocessor.java:241] [main] Processing chromosome C28382 Processing chromosome C28382 INFO [2014-07-02 14:59:40,065] [Preprocessor.java:241] [main] Processing chromosome C28398 Processing chromosome C28398 INFO [2014-07-02 14:59:40,132] [Preprocessor.java:241] [main] Processing chromosome C28408 Processing chromosome C28408 INFO [2014-07-02 14:59:40,155] [Preprocessor.java:241] [main] Processing chromosome C28414 Processing chromosome C28414 INFO [2014-07-02 14:59:40,163] [Preprocessor.java:241] [main] Processing chromosome C28420 Processing chromosome C28420 INFO [2014-07-02 14:59:40,177] [Preprocessor.java:241] [main] Processing chromosome C28426 Processing chromosome C28426 INFO [2014-07-02 14:59:40,199] [Preprocessor.java:241] [main] Processing chromosome C28430 Processing chromosome C28430 INFO [2014-07-02 14:59:40,224] [Preprocessor.java:241] [main] Processing chromosome C28432 Processing chromosome C28432 INFO [2014-07-02 14:59:40,245] [Preprocessor.java:241] [main] Processing chromosome C28444 Processing chromosome C28444 INFO [2014-07-02 14:59:40,254] [Preprocessor.java:241] [main] Processing chromosome C28450 Processing chromosome C28450 INFO [2014-07-02 14:59:40,259] [Preprocessor.java:241] [main] Processing chromosome C28454 Processing chromosome C28454 INFO [2014-07-02 14:59:40,295] [Preprocessor.java:241] [main] Processing chromosome C28462 Processing chromosome C28462 INFO [2014-07-02 14:59:40,320] [Preprocessor.java:241] [main] Processing chromosome C28468 Processing chromosome C28468 INFO [2014-07-02 14:59:40,347] [Preprocessor.java:241] [main] Processing chromosome C28470 Processing chromosome C28470 INFO [2014-07-02 14:59:40,358] [Preprocessor.java:241] [main] Processing chromosome C28472 Processing chromosome C28472 INFO [2014-07-02 14:59:40,363] [Preprocessor.java:241] [main] Processing chromosome C28476 Processing chromosome C28476 INFO [2014-07-02 14:59:40,379] [Preprocessor.java:241] [main] Processing chromosome C28486 Processing chromosome C28486 INFO [2014-07-02 14:59:40,383] [Preprocessor.java:241] [main] Processing chromosome C28498 Processing chromosome C28498 INFO [2014-07-02 14:59:40,403] [Preprocessor.java:241] [main] Processing chromosome C28502 Processing chromosome C28502 INFO [2014-07-02 14:59:40,409] [Preprocessor.java:241] [main] Processing chromosome C28506 Processing chromosome C28506 INFO [2014-07-02 14:59:40,424] [Preprocessor.java:241] [main] Processing chromosome C28510 Processing chromosome C28510 INFO [2014-07-02 14:59:40,430] [Preprocessor.java:241] [main] Processing chromosome C28512 Processing chromosome C28512 INFO [2014-07-02 14:59:40,462] [Preprocessor.java:241] [main] Processing chromosome C28514 Processing chromosome C28514 INFO [2014-07-02 14:59:40,465] [Preprocessor.java:241] [main] Processing chromosome C28522 Processing chromosome C28522 INFO [2014-07-02 14:59:40,489] [Preprocessor.java:241] [main] Processing chromosome C28526 Processing chromosome C28526 INFO [2014-07-02 14:59:40,504] [Preprocessor.java:241] [main] Processing chromosome C28534 Processing chromosome C28534 INFO [2014-07-02 14:59:40,537] [Preprocessor.java:241] [main] Processing chromosome C28536 Processing chromosome C28536 INFO [2014-07-02 14:59:40,598] [Preprocessor.java:241] [main] Processing chromosome C28540 Processing chromosome C28540 INFO [2014-07-02 14:59:40,631] [Preprocessor.java:241] [main] Processing chromosome C28544 Processing chromosome C28544 INFO [2014-07-02 14:59:40,647] [Preprocessor.java:241] [main] Processing chromosome C28546 Processing chromosome C28546 INFO [2014-07-02 14:59:40,655] [Preprocessor.java:241] [main] Processing chromosome C28550 Processing chromosome C28550 INFO [2014-07-02 14:59:40,666] [Preprocessor.java:241] [main] Processing chromosome C28554 Processing chromosome C28554 INFO [2014-07-02 14:59:40,674] [Preprocessor.java:241] [main] Processing chromosome C28588 Processing chromosome C28588 INFO [2014-07-02 14:59:40,700] [Preprocessor.java:241] [main] Processing chromosome C28592 Processing chromosome C28592 INFO [2014-07-02 14:59:40,713] [Preprocessor.java:241] [main] Processing chromosome C28594 Processing chromosome C28594 INFO [2014-07-02 14:59:40,733] [Preprocessor.java:241] [main] Processing chromosome C28602 Processing chromosome C28602 INFO [2014-07-02 14:59:40,753] [Preprocessor.java:241] [main] Processing chromosome C28618 Processing chromosome C28618 INFO [2014-07-02 14:59:40,769] [Preprocessor.java:241] [main] Processing chromosome C28622 Processing chromosome C28622 INFO [2014-07-02 14:59:40,816] [Preprocessor.java:241] [main] Processing chromosome C28626 Processing chromosome C28626 INFO [2014-07-02 14:59:40,830] [Preprocessor.java:241] [main] Processing chromosome C28628 Processing chromosome C28628 INFO [2014-07-02 14:59:40,844] [Preprocessor.java:241] [main] Processing chromosome C28632 Processing chromosome C28632 INFO [2014-07-02 14:59:40,851] [Preprocessor.java:241] [main] Processing chromosome C28644 Processing chromosome C28644 INFO [2014-07-02 14:59:40,872] [Preprocessor.java:241] [main] Processing chromosome C28652 Processing chromosome C28652 INFO [2014-07-02 14:59:40,885] [Preprocessor.java:241] [main] Processing chromosome C28654 Processing chromosome C28654 INFO [2014-07-02 14:59:40,897] [Preprocessor.java:241] [main] Processing chromosome C28666 Processing chromosome C28666 INFO [2014-07-02 14:59:40,923] [Preprocessor.java:241] [main] Processing chromosome C28676 Processing chromosome C28676 INFO [2014-07-02 14:59:40,926] [Preprocessor.java:241] [main] Processing chromosome C28678 Processing chromosome C28678 INFO [2014-07-02 14:59:40,957] [Preprocessor.java:241] [main] Processing chromosome C28684 Processing chromosome C28684 INFO [2014-07-02 14:59:40,970] [Preprocessor.java:241] [main] Processing chromosome C28702 Processing chromosome C28702 INFO [2014-07-02 14:59:40,984] [Preprocessor.java:241] [main] Processing chromosome C28704 Processing chromosome C28704 INFO [2014-07-02 14:59:40,987] [Preprocessor.java:241] [main] Processing chromosome C28708 Processing chromosome C28708 INFO [2014-07-02 14:59:41,021] [Preprocessor.java:241] [main] Processing chromosome C28716 Processing chromosome C28716 INFO [2014-07-02 14:59:41,045] [Preprocessor.java:241] [main] Processing chromosome C28718 Processing chromosome C28718 INFO [2014-07-02 14:59:41,055] [Preprocessor.java:241] [main] Processing chromosome C28722 Processing chromosome C28722 INFO [2014-07-02 14:59:41,076] [Preprocessor.java:241] [main] Processing chromosome C28726 Processing chromosome C28726 INFO [2014-07-02 14:59:41,082] [Preprocessor.java:241] [main] Processing chromosome C28728 Processing chromosome C28728 INFO [2014-07-02 14:59:41,091] [Preprocessor.java:241] [main] Processing chromosome C28732 Processing chromosome C28732 INFO [2014-07-02 14:59:41,104] [Preprocessor.java:241] [main] Processing chromosome C28734 Processing chromosome C28734 INFO [2014-07-02 14:59:41,121] [Preprocessor.java:241] [main] Processing chromosome C28736 Processing chromosome C28736 INFO [2014-07-02 14:59:41,148] [Preprocessor.java:241] [main] Processing chromosome C28748 Processing chromosome C28748 INFO [2014-07-02 14:59:41,152] [Preprocessor.java:241] [main] Processing chromosome C28752 Processing chromosome C28752 INFO [2014-07-02 14:59:41,168] [Preprocessor.java:241] [main] Processing chromosome C28760 Processing chromosome C28760 INFO [2014-07-02 14:59:41,198] [Preprocessor.java:241] [main] Processing chromosome C28766 Processing chromosome C28766 INFO [2014-07-02 14:59:41,210] [Preprocessor.java:241] [main] Processing chromosome C28772 Processing chromosome C28772 INFO [2014-07-02 14:59:41,228] [Preprocessor.java:241] [main] Processing chromosome C28784 Processing chromosome C28784 INFO [2014-07-02 14:59:41,237] [Preprocessor.java:241] [main] Processing chromosome C28800 Processing chromosome C28800 INFO [2014-07-02 14:59:41,249] [Preprocessor.java:241] [main] Processing chromosome C28802 Processing chromosome C28802 INFO [2014-07-02 14:59:41,259] [Preprocessor.java:241] [main] Processing chromosome C28806 Processing chromosome C28806 INFO [2014-07-02 14:59:41,284] [Preprocessor.java:241] [main] Processing chromosome C28808 Processing chromosome C28808 INFO [2014-07-02 14:59:41,294] [Preprocessor.java:241] [main] Processing chromosome C28816 Processing chromosome C28816 INFO [2014-07-02 14:59:41,302] [Preprocessor.java:241] [main] Processing chromosome C28830 Processing chromosome C28830 INFO [2014-07-02 14:59:41,307] [Preprocessor.java:241] [main] Processing chromosome C28836 Processing chromosome C28836 INFO [2014-07-02 14:59:41,309] [Preprocessor.java:241] [main] Processing chromosome C28838 Processing chromosome C28838 INFO [2014-07-02 14:59:41,329] [Preprocessor.java:241] [main] Processing chromosome C28840 Processing chromosome C28840 INFO [2014-07-02 14:59:41,339] [Preprocessor.java:241] [main] Processing chromosome C28846 Processing chromosome C28846 INFO [2014-07-02 14:59:41,347] [Preprocessor.java:241] [main] Processing chromosome C28850 Processing chromosome C28850 INFO [2014-07-02 14:59:41,371] [Preprocessor.java:241] [main] Processing chromosome C28852 Processing chromosome C28852 INFO [2014-07-02 14:59:41,397] [Preprocessor.java:241] [main] Processing chromosome C28858 Processing chromosome C28858 INFO [2014-07-02 14:59:41,402] [Preprocessor.java:241] [main] Processing chromosome C28864 Processing chromosome C28864 INFO [2014-07-02 14:59:41,431] [Preprocessor.java:241] [main] Processing chromosome C28876 Processing chromosome C28876 INFO [2014-07-02 14:59:41,436] [Preprocessor.java:241] [main] Processing chromosome C28884 Processing chromosome C28884 INFO [2014-07-02 14:59:41,440] [Preprocessor.java:241] [main] Processing chromosome C28898 Processing chromosome C28898 INFO [2014-07-02 14:59:41,465] [Preprocessor.java:241] [main] Processing chromosome C28902 Processing chromosome C28902 INFO [2014-07-02 14:59:41,471] [Preprocessor.java:241] [main] Processing chromosome C28906 Processing chromosome C28906 INFO [2014-07-02 14:59:41,481] [Preprocessor.java:241] [main] Processing chromosome C28910 Processing chromosome C28910 INFO [2014-07-02 14:59:41,489] [Preprocessor.java:241] [main] Processing chromosome C28934 Processing chromosome C28934 INFO [2014-07-02 14:59:41,495] [Preprocessor.java:241] [main] Processing chromosome C28952 Processing chromosome C28952 INFO [2014-07-02 14:59:41,512] [Preprocessor.java:241] [main] Processing chromosome C28958 Processing chromosome C28958 INFO [2014-07-02 14:59:41,520] [Preprocessor.java:241] [main] Processing chromosome C28962 Processing chromosome C28962 INFO [2014-07-02 14:59:41,524] [Preprocessor.java:241] [main] Processing chromosome C28974 Processing chromosome C28974 INFO [2014-07-02 14:59:41,546] [Preprocessor.java:241] [main] Processing chromosome C28982 Processing chromosome C28982 INFO [2014-07-02 14:59:41,570] [Preprocessor.java:241] [main] Processing chromosome C28990 Processing chromosome C28990 INFO [2014-07-02 14:59:41,579] [Preprocessor.java:241] [main] Processing chromosome C28992 Processing chromosome C28992 INFO [2014-07-02 14:59:41,628] [Preprocessor.java:241] [main] Processing chromosome C28996 Processing chromosome C28996 INFO [2014-07-02 14:59:41,645] [Preprocessor.java:241] [main] Processing chromosome C28998 Processing chromosome C28998 INFO [2014-07-02 14:59:41,669] [Preprocessor.java:241] [main] Processing chromosome C29006 Processing chromosome C29006 INFO [2014-07-02 14:59:41,672] [Preprocessor.java:241] [main] Processing chromosome C29008 Processing chromosome C29008 INFO [2014-07-02 14:59:41,702] [Preprocessor.java:241] [main] Processing chromosome C29010 Processing chromosome C29010 INFO [2014-07-02 14:59:41,722] [Preprocessor.java:241] [main] Processing chromosome C29022 Processing chromosome C29022 INFO [2014-07-02 14:59:41,725] [Preprocessor.java:241] [main] Processing chromosome C29030 Processing chromosome C29030 INFO [2014-07-02 14:59:41,747] [Preprocessor.java:241] [main] Processing chromosome C29038 Processing chromosome C29038 INFO [2014-07-02 14:59:41,756] [Preprocessor.java:241] [main] Processing chromosome C29044 Processing chromosome C29044 INFO [2014-07-02 14:59:41,760] [Preprocessor.java:241] [main] Processing chromosome C29048 Processing chromosome C29048 INFO [2014-07-02 14:59:41,787] [Preprocessor.java:241] [main] Processing chromosome C29050 Processing chromosome C29050 INFO [2014-07-02 14:59:41,801] [Preprocessor.java:241] [main] Processing chromosome C29052 Processing chromosome C29052 INFO [2014-07-02 14:59:41,818] [Preprocessor.java:241] [main] Processing chromosome C29066 Processing chromosome C29066 INFO [2014-07-02 14:59:41,833] [Preprocessor.java:241] [main] Processing chromosome C29070 Processing chromosome C29070 INFO [2014-07-02 14:59:41,853] [Preprocessor.java:241] [main] Processing chromosome C29072 Processing chromosome C29072 INFO [2014-07-02 14:59:41,860] [Preprocessor.java:241] [main] Processing chromosome C29100 Processing chromosome C29100 INFO [2014-07-02 14:59:41,896] [Preprocessor.java:241] [main] Processing chromosome C29106 Processing chromosome C29106 INFO [2014-07-02 14:59:41,899] [Preprocessor.java:241] [main] Processing chromosome C29108 Processing chromosome C29108 INFO [2014-07-02 14:59:41,907] [Preprocessor.java:241] [main] Processing chromosome C29110 Processing chromosome C29110 INFO [2014-07-02 14:59:41,915] [Preprocessor.java:241] [main] Processing chromosome C29112 Processing chromosome C29112 INFO [2014-07-02 14:59:41,931] [Preprocessor.java:241] [main] Processing chromosome C29114 Processing chromosome C29114 INFO [2014-07-02 14:59:41,941] [Preprocessor.java:241] [main] Processing chromosome C29132 Processing chromosome C29132 INFO [2014-07-02 14:59:41,971] [Preprocessor.java:241] [main] Processing chromosome C29134 Processing chromosome C29134 INFO [2014-07-02 14:59:41,986] [Preprocessor.java:241] [main] Processing chromosome C29144 Processing chromosome C29144 INFO [2014-07-02 14:59:42,007] [Preprocessor.java:241] [main] Processing chromosome C29154 Processing chromosome C29154 INFO [2014-07-02 14:59:42,013] [Preprocessor.java:241] [main] Processing chromosome C29164 Processing chromosome C29164 INFO [2014-07-02 14:59:42,039] [Preprocessor.java:241] [main] Processing chromosome C29168 Processing chromosome C29168 INFO [2014-07-02 14:59:42,099] [Preprocessor.java:241] [main] Processing chromosome C29178 Processing chromosome C29178 INFO [2014-07-02 14:59:42,114] [Preprocessor.java:241] [main] Processing chromosome C29184 Processing chromosome C29184 INFO [2014-07-02 14:59:42,124] [Preprocessor.java:241] [main] Processing chromosome C29186 Processing chromosome C29186 INFO [2014-07-02 14:59:42,145] [Preprocessor.java:241] [main] Processing chromosome C29192 Processing chromosome C29192 INFO [2014-07-02 14:59:42,159] [Preprocessor.java:241] [main] Processing chromosome C29194 Processing chromosome C29194 INFO [2014-07-02 14:59:42,168] [Preprocessor.java:241] [main] Processing chromosome C29202 Processing chromosome C29202 INFO [2014-07-02 14:59:42,184] [Preprocessor.java:241] [main] Processing chromosome C29208 Processing chromosome C29208 INFO [2014-07-02 14:59:42,201] [Preprocessor.java:241] [main] Processing chromosome C29214 Processing chromosome C29214 INFO [2014-07-02 14:59:42,210] [Preprocessor.java:241] [main] Processing chromosome C29222 Processing chromosome C29222 INFO [2014-07-02 14:59:42,219] [Preprocessor.java:241] [main] Processing chromosome C29224 Processing chromosome C29224 INFO [2014-07-02 14:59:42,222] [Preprocessor.java:241] [main] Processing chromosome C29238 Processing chromosome C29238 INFO [2014-07-02 14:59:42,232] [Preprocessor.java:241] [main] Processing chromosome C29244 Processing chromosome C29244 INFO [2014-07-02 14:59:42,251] [Preprocessor.java:241] [main] Processing chromosome C29254 Processing chromosome C29254 INFO [2014-07-02 14:59:42,282] [Preprocessor.java:241] [main] Processing chromosome C29258 Processing chromosome C29258 INFO [2014-07-02 14:59:42,305] [Preprocessor.java:241] [main] Processing chromosome C29260 Processing chromosome C29260 INFO [2014-07-02 14:59:42,316] [Preprocessor.java:241] [main] Processing chromosome C29272 Processing chromosome C29272 INFO [2014-07-02 14:59:42,324] [Preprocessor.java:241] [main] Processing chromosome C29274 Processing chromosome C29274 INFO [2014-07-02 14:59:42,344] [Preprocessor.java:241] [main] Processing chromosome C29280 Processing chromosome C29280 INFO [2014-07-02 14:59:42,369] [Preprocessor.java:241] [main] Processing chromosome C29290 Processing chromosome C29290 INFO [2014-07-02 14:59:42,375] [Preprocessor.java:241] [main] Processing chromosome C29294 Processing chromosome C29294 INFO [2014-07-02 14:59:42,406] [Preprocessor.java:241] [main] Processing chromosome C29298 Processing chromosome C29298 INFO [2014-07-02 14:59:42,433] [Preprocessor.java:241] [main] Processing chromosome C29300 Processing chromosome C29300 INFO [2014-07-02 14:59:42,464] [Preprocessor.java:241] [main] Processing chromosome C29308 Processing chromosome C29308 INFO [2014-07-02 14:59:42,477] [Preprocessor.java:241] [main] Processing chromosome C2931 Processing chromosome C2931 INFO [2014-07-02 14:59:42,539] [Preprocessor.java:241] [main] Processing chromosome C29320 Processing chromosome C29320 INFO [2014-07-02 14:59:42,558] [Preprocessor.java:241] [main] Processing chromosome C29322 Processing chromosome C29322 INFO [2014-07-02 14:59:42,568] [Preprocessor.java:241] [main] Processing chromosome C29340 Processing chromosome C29340 INFO [2014-07-02 14:59:42,574] [Preprocessor.java:241] [main] Processing chromosome C29344 Processing chromosome C29344 INFO [2014-07-02 14:59:42,580] [Preprocessor.java:241] [main] Processing chromosome C29346 Processing chromosome C29346 INFO [2014-07-02 14:59:42,608] [Preprocessor.java:241] [main] Processing chromosome C29348 Processing chromosome C29348 INFO [2014-07-02 14:59:42,620] [Preprocessor.java:241] [main] Processing chromosome C29354 Processing chromosome C29354 INFO [2014-07-02 14:59:42,659] [Preprocessor.java:241] [main] Processing chromosome C29356 Processing chromosome C29356 INFO [2014-07-02 14:59:42,665] [Preprocessor.java:241] [main] Processing chromosome C29362 Processing chromosome C29362 INFO [2014-07-02 14:59:42,676] [Preprocessor.java:241] [main] Processing chromosome C29364 Processing chromosome C29364 INFO [2014-07-02 14:59:42,690] [Preprocessor.java:241] [main] Processing chromosome C29368 Processing chromosome C29368 INFO [2014-07-02 14:59:42,721] [Preprocessor.java:241] [main] Processing chromosome C29380 Processing chromosome C29380 INFO [2014-07-02 14:59:42,738] [Preprocessor.java:241] [main] Processing chromosome C29388 Processing chromosome C29388 INFO [2014-07-02 14:59:42,764] [Preprocessor.java:241] [main] Processing chromosome C29394 Processing chromosome C29394 INFO [2014-07-02 14:59:42,782] [Preprocessor.java:241] [main] Processing chromosome C29398 Processing chromosome C29398 INFO [2014-07-02 14:59:42,791] [Preprocessor.java:241] [main] Processing chromosome C29400 Processing chromosome C29400 INFO [2014-07-02 14:59:42,795] [Preprocessor.java:241] [main] Processing chromosome C29408 Processing chromosome C29408 INFO [2014-07-02 14:59:42,802] [Preprocessor.java:241] [main] Processing chromosome C29410 Processing chromosome C29410 INFO [2014-07-02 14:59:42,831] [Preprocessor.java:241] [main] Processing chromosome C29414 Processing chromosome C29414 INFO [2014-07-02 14:59:42,862] [Preprocessor.java:241] [main] Processing chromosome C29416 Processing chromosome C29416 INFO [2014-07-02 14:59:42,866] [Preprocessor.java:241] [main] Processing chromosome C29424 Processing chromosome C29424 INFO [2014-07-02 14:59:42,875] [Preprocessor.java:241] [main] Processing chromosome C29428 Processing chromosome C29428 INFO [2014-07-02 14:59:42,900] [Preprocessor.java:241] [main] Processing chromosome C29432 Processing chromosome C29432 INFO [2014-07-02 14:59:42,934] [Preprocessor.java:241] [main] Processing chromosome C29438 Processing chromosome C29438 INFO [2014-07-02 14:59:42,940] [Preprocessor.java:241] [main] Processing chromosome C29444 Processing chromosome C29444 INFO [2014-07-02 14:59:42,965] [Preprocessor.java:241] [main] Processing chromosome C29446 Processing chromosome C29446 INFO [2014-07-02 14:59:42,969] [Preprocessor.java:241] [main] Processing chromosome C29450 Processing chromosome C29450 INFO [2014-07-02 14:59:42,982] [Preprocessor.java:241] [main] Processing chromosome C29458 Processing chromosome C29458 INFO [2014-07-02 14:59:43,013] [Preprocessor.java:241] [main] Processing chromosome C29472 Processing chromosome C29472 INFO [2014-07-02 14:59:43,026] [Preprocessor.java:241] [main] Processing chromosome C29474 Processing chromosome C29474 INFO [2014-07-02 14:59:43,053] [Preprocessor.java:241] [main] Processing chromosome C29494 Processing chromosome C29494 INFO [2014-07-02 14:59:43,062] [Preprocessor.java:241] [main] Processing chromosome C29498 Processing chromosome C29498 INFO [2014-07-02 14:59:43,064] [Preprocessor.java:241] [main] Processing chromosome C29506 Processing chromosome C29506 INFO [2014-07-02 14:59:43,075] [Preprocessor.java:241] [main] Processing chromosome C29510 Processing chromosome C29510 INFO [2014-07-02 14:59:43,084] [Preprocessor.java:241] [main] Processing chromosome C29518 Processing chromosome C29518 INFO [2014-07-02 14:59:43,088] [Preprocessor.java:241] [main] Processing chromosome C29524 Processing chromosome C29524 INFO [2014-07-02 14:59:43,097] [Preprocessor.java:241] [main] Processing chromosome C29526 Processing chromosome C29526 INFO [2014-07-02 14:59:43,107] [Preprocessor.java:241] [main] Processing chromosome C29530 Processing chromosome C29530 INFO [2014-07-02 14:59:43,121] [Preprocessor.java:241] [main] Processing chromosome C29538 Processing chromosome C29538 INFO [2014-07-02 14:59:43,129] [Preprocessor.java:241] [main] Processing chromosome C29540 Processing chromosome C29540 INFO [2014-07-02 14:59:43,154] [Preprocessor.java:241] [main] Processing chromosome C29544 Processing chromosome C29544 INFO [2014-07-02 14:59:43,159] [Preprocessor.java:241] [main] Processing chromosome C29548 Processing chromosome C29548 INFO [2014-07-02 14:59:43,165] [Preprocessor.java:241] [main] Processing chromosome C29554 Processing chromosome C29554 INFO [2014-07-02 14:59:43,181] [Preprocessor.java:241] [main] Processing chromosome C29558 Processing chromosome C29558 INFO [2014-07-02 14:59:43,192] [Preprocessor.java:241] [main] Processing chromosome C29566 Processing chromosome C29566 INFO [2014-07-02 14:59:43,198] [Preprocessor.java:241] [main] Processing chromosome C29572 Processing chromosome C29572 INFO [2014-07-02 14:59:43,225] [Preprocessor.java:241] [main] Processing chromosome C29574 Processing chromosome C29574 INFO [2014-07-02 14:59:43,228] [Preprocessor.java:241] [main] Processing chromosome C29576 Processing chromosome C29576 INFO [2014-07-02 14:59:43,243] [Preprocessor.java:241] [main] Processing chromosome C29582 Processing chromosome C29582 INFO [2014-07-02 14:59:43,252] [Preprocessor.java:241] [main] Processing chromosome C29584 Processing chromosome C29584 INFO [2014-07-02 14:59:43,274] [Preprocessor.java:241] [main] Processing chromosome C29612 Processing chromosome C29612 INFO [2014-07-02 14:59:43,293] [Preprocessor.java:241] [main] Processing chromosome C29614 Processing chromosome C29614 INFO [2014-07-02 14:59:43,323] [Preprocessor.java:241] [main] Processing chromosome C29618 Processing chromosome C29618 INFO [2014-07-02 14:59:43,340] [Preprocessor.java:241] [main] Processing chromosome C29620 Processing chromosome C29620 INFO [2014-07-02 14:59:43,347] [Preprocessor.java:241] [main] Processing chromosome C29624 Processing chromosome C29624 INFO [2014-07-02 14:59:43,371] [Preprocessor.java:241] [main] Processing chromosome C29632 Processing chromosome C29632 INFO [2014-07-02 14:59:43,401] [Preprocessor.java:241] [main] Processing chromosome C29634 Processing chromosome C29634 INFO [2014-07-02 14:59:43,437] [Preprocessor.java:241] [main] Processing chromosome C29638 Processing chromosome C29638 INFO [2014-07-02 14:59:43,449] [Preprocessor.java:241] [main] Processing chromosome C29642 Processing chromosome C29642 INFO [2014-07-02 14:59:43,464] [Preprocessor.java:241] [main] Processing chromosome C29644 Processing chromosome C29644 INFO [2014-07-02 14:59:43,479] [Preprocessor.java:241] [main] Processing chromosome C29662 Processing chromosome C29662 INFO [2014-07-02 14:59:43,517] [Preprocessor.java:241] [main] Processing chromosome C29664 Processing chromosome C29664 INFO [2014-07-02 14:59:43,520] [Preprocessor.java:241] [main] Processing chromosome C2967 Processing chromosome C2967 INFO [2014-07-02 14:59:43,578] [Preprocessor.java:241] [main] Processing chromosome C29670 Processing chromosome C29670 INFO [2014-07-02 14:59:43,586] [Preprocessor.java:241] [main] Processing chromosome C29678 Processing chromosome C29678 INFO [2014-07-02 14:59:43,595] [Preprocessor.java:241] [main] Processing chromosome C29682 Processing chromosome C29682 INFO [2014-07-02 14:59:43,603] [Preprocessor.java:241] [main] Processing chromosome C29698 Processing chromosome C29698 INFO [2014-07-02 14:59:43,611] [Preprocessor.java:241] [main] Processing chromosome C29704 Processing chromosome C29704 INFO [2014-07-02 14:59:43,631] [Preprocessor.java:241] [main] Processing chromosome C29722 Processing chromosome C29722 INFO [2014-07-02 14:59:43,662] [Preprocessor.java:241] [main] Processing chromosome C29724 Processing chromosome C29724 INFO [2014-07-02 14:59:43,675] [Preprocessor.java:241] [main] Processing chromosome C29730 Processing chromosome C29730 INFO [2014-07-02 14:59:43,680] [Preprocessor.java:241] [main] Processing chromosome C29734 Processing chromosome C29734 INFO [2014-07-02 14:59:43,698] [Preprocessor.java:241] [main] Processing chromosome C29736 Processing chromosome C29736 INFO [2014-07-02 14:59:43,703] [Preprocessor.java:241] [main] Processing chromosome C29750 Processing chromosome C29750 INFO [2014-07-02 14:59:43,721] [Preprocessor.java:241] [main] Processing chromosome C29758 Processing chromosome C29758 INFO [2014-07-02 14:59:43,752] [Preprocessor.java:241] [main] Processing chromosome C29764 Processing chromosome C29764 INFO [2014-07-02 14:59:43,777] [Preprocessor.java:241] [main] Processing chromosome C29766 Processing chromosome C29766 INFO [2014-07-02 14:59:43,799] [Preprocessor.java:241] [main] Processing chromosome C29768 Processing chromosome C29768 INFO [2014-07-02 14:59:43,810] [Preprocessor.java:241] [main] Processing chromosome C29774 Processing chromosome C29774 INFO [2014-07-02 14:59:43,831] [Preprocessor.java:241] [main] Processing chromosome C29784 Processing chromosome C29784 INFO [2014-07-02 14:59:43,856] [Preprocessor.java:241] [main] Processing chromosome C29786 Processing chromosome C29786 INFO [2014-07-02 14:59:43,859] [Preprocessor.java:241] [main] Processing chromosome C29788 Processing chromosome C29788 INFO [2014-07-02 14:59:43,879] [Preprocessor.java:241] [main] Processing chromosome C29798 Processing chromosome C29798 INFO [2014-07-02 14:59:43,910] [Preprocessor.java:241] [main] Processing chromosome C29820 Processing chromosome C29820 INFO [2014-07-02 14:59:43,928] [Preprocessor.java:241] [main] Processing chromosome C29848 Processing chromosome C29848 INFO [2014-07-02 14:59:43,944] [Preprocessor.java:241] [main] Processing chromosome C29876 Processing chromosome C29876 INFO [2014-07-02 14:59:43,982] [Preprocessor.java:241] [main] Processing chromosome C29878 Processing chromosome C29878 INFO [2014-07-02 14:59:44,020] [Preprocessor.java:241] [main] Processing chromosome C29898 Processing chromosome C29898 INFO [2014-07-02 14:59:44,028] [Preprocessor.java:241] [main] Processing chromosome C29902 Processing chromosome C29902 INFO [2014-07-02 14:59:44,054] [Preprocessor.java:241] [main] Processing chromosome C29904 Processing chromosome C29904 INFO [2014-07-02 14:59:44,066] [Preprocessor.java:241] [main] Processing chromosome C29908 Processing chromosome C29908 INFO [2014-07-02 14:59:44,073] [Preprocessor.java:241] [main] Processing chromosome C29914 Processing chromosome C29914 INFO [2014-07-02 14:59:44,085] [Preprocessor.java:241] [main] Processing chromosome C29928 Processing chromosome C29928 INFO [2014-07-02 14:59:44,094] [Preprocessor.java:241] [main] Processing chromosome C29936 Processing chromosome C29936 INFO [2014-07-02 14:59:44,106] [Preprocessor.java:241] [main] Processing chromosome C29942 Processing chromosome C29942 INFO [2014-07-02 14:59:44,125] [Preprocessor.java:241] [main] Processing chromosome C29946 Processing chromosome C29946 INFO [2014-07-02 14:59:44,140] [Preprocessor.java:241] [main] Processing chromosome C29950 Processing chromosome C29950 INFO [2014-07-02 14:59:44,156] [Preprocessor.java:241] [main] Processing chromosome C29954 Processing chromosome C29954 INFO [2014-07-02 14:59:44,175] [Preprocessor.java:241] [main] Processing chromosome C29956 Processing chromosome C29956 INFO [2014-07-02 14:59:44,212] [Preprocessor.java:241] [main] Processing chromosome C29958 Processing chromosome C29958 INFO [2014-07-02 14:59:44,242] [Preprocessor.java:241] [main] Processing chromosome C29960 Processing chromosome C29960 INFO [2014-07-02 14:59:44,265] [Preprocessor.java:241] [main] Processing chromosome C29966 Processing chromosome C29966 INFO [2014-07-02 14:59:44,269] [Preprocessor.java:241] [main] Processing chromosome C29968 Processing chromosome C29968 INFO [2014-07-02 14:59:44,286] [Preprocessor.java:241] [main] Processing chromosome C29970 Processing chromosome C29970 INFO [2014-07-02 14:59:44,292] [Preprocessor.java:241] [main] Processing chromosome C29974 Processing chromosome C29974 INFO [2014-07-02 14:59:44,299] [Preprocessor.java:241] [main] Processing chromosome C29976 Processing chromosome C29976 INFO [2014-07-02 14:59:44,306] [Preprocessor.java:241] [main] Processing chromosome C29980 Processing chromosome C29980 INFO [2014-07-02 14:59:44,324] [Preprocessor.java:241] [main] Processing chromosome C29986 Processing chromosome C29986 INFO [2014-07-02 14:59:44,345] [Preprocessor.java:241] [main] Processing chromosome C29988 Processing chromosome C29988 INFO [2014-07-02 14:59:44,355] [Preprocessor.java:241] [main] Processing chromosome C29992 Processing chromosome C29992 INFO [2014-07-02 14:59:44,364] [Preprocessor.java:241] [main] Processing chromosome C29994 Processing chromosome C29994 INFO [2014-07-02 14:59:44,385] [Preprocessor.java:241] [main] Processing chromosome C30012 Processing chromosome C30012 INFO [2014-07-02 14:59:44,394] [Preprocessor.java:241] [main] Processing chromosome C30022 Processing chromosome C30022 INFO [2014-07-02 14:59:44,397] [Preprocessor.java:241] [main] Processing chromosome C30040 Processing chromosome C30040 INFO [2014-07-02 14:59:44,420] [Preprocessor.java:241] [main] Processing chromosome C30042 Processing chromosome C30042 INFO [2014-07-02 14:59:44,433] [Preprocessor.java:241] [main] Processing chromosome C30044 Processing chromosome C30044 INFO [2014-07-02 14:59:44,453] [Preprocessor.java:241] [main] Processing chromosome C30046 Processing chromosome C30046 INFO [2014-07-02 14:59:44,487] [Preprocessor.java:241] [main] Processing chromosome C30058 Processing chromosome C30058 INFO [2014-07-02 14:59:44,493] [Preprocessor.java:241] [main] Processing chromosome C30060 Processing chromosome C30060 INFO [2014-07-02 14:59:44,497] [Preprocessor.java:241] [main] Processing chromosome C30064 Processing chromosome C30064 INFO [2014-07-02 14:59:44,500] [Preprocessor.java:241] [main] Processing chromosome C30072 Processing chromosome C30072 INFO [2014-07-02 14:59:44,521] [Preprocessor.java:241] [main] Processing chromosome C30084 Processing chromosome C30084 INFO [2014-07-02 14:59:44,542] [Preprocessor.java:241] [main] Processing chromosome C30100 Processing chromosome C30100 INFO [2014-07-02 14:59:44,553] [Preprocessor.java:241] [main] Processing chromosome C30110 Processing chromosome C30110 INFO [2014-07-02 14:59:44,561] [Preprocessor.java:241] [main] Processing chromosome C30118 Processing chromosome C30118 INFO [2014-07-02 14:59:44,577] [Preprocessor.java:241] [main] Processing chromosome C30120 Processing chromosome C30120 INFO [2014-07-02 14:59:44,582] [Preprocessor.java:241] [main] Processing chromosome C30124 Processing chromosome C30124 INFO [2014-07-02 14:59:44,631] [Preprocessor.java:241] [main] Processing chromosome C30126 Processing chromosome C30126 INFO [2014-07-02 14:59:44,661] [Preprocessor.java:241] [main] Processing chromosome C30130 Processing chromosome C30130 INFO [2014-07-02 14:59:44,665] [Preprocessor.java:241] [main] Processing chromosome C30140 Processing chromosome C30140 INFO [2014-07-02 14:59:44,667] [Preprocessor.java:241] [main] Processing chromosome C30144 Processing chromosome C30144 INFO [2014-07-02 14:59:44,674] [Preprocessor.java:241] [main] Processing chromosome C30162 Processing chromosome C30162 INFO [2014-07-02 14:59:44,682] [Preprocessor.java:241] [main] Processing chromosome C30166 Processing chromosome C30166 INFO [2014-07-02 14:59:44,694] [Preprocessor.java:241] [main] Processing chromosome C30176 Processing chromosome C30176 INFO [2014-07-02 14:59:44,702] [Preprocessor.java:241] [main] Processing chromosome C30178 Processing chromosome C30178 INFO [2014-07-02 14:59:44,711] [Preprocessor.java:241] [main] Processing chromosome C30186 Processing chromosome C30186 INFO [2014-07-02 14:59:44,737] [Preprocessor.java:241] [main] Processing chromosome C30188 Processing chromosome C30188 INFO [2014-07-02 14:59:44,750] [Preprocessor.java:241] [main] Processing chromosome C30206 Processing chromosome C30206 INFO [2014-07-02 14:59:44,783] [Preprocessor.java:241] [main] Processing chromosome C30216 Processing chromosome C30216 INFO [2014-07-02 14:59:44,808] [Preprocessor.java:241] [main] Processing chromosome C30224 Processing chromosome C30224 INFO [2014-07-02 14:59:44,819] [Preprocessor.java:241] [main] Processing chromosome C30226 Processing chromosome C30226 INFO [2014-07-02 14:59:44,821] [Preprocessor.java:241] [main] Processing chromosome C30232 Processing chromosome C30232 INFO [2014-07-02 14:59:44,823] [Preprocessor.java:241] [main] Processing chromosome C30238 Processing chromosome C30238 INFO [2014-07-02 14:59:44,851] [Preprocessor.java:241] [main] Processing chromosome C30240 Processing chromosome C30240 INFO [2014-07-02 14:59:44,866] [Preprocessor.java:241] [main] Processing chromosome C30252 Processing chromosome C30252 INFO [2014-07-02 14:59:44,902] [Preprocessor.java:241] [main] Processing chromosome C30258 Processing chromosome C30258 INFO [2014-07-02 14:59:44,921] [Preprocessor.java:241] [main] Processing chromosome C30260 Processing chromosome C30260 INFO [2014-07-02 14:59:44,935] [Preprocessor.java:241] [main] Processing chromosome C30262 Processing chromosome C30262 INFO [2014-07-02 14:59:44,971] [Preprocessor.java:241] [main] Processing chromosome C30282 Processing chromosome C30282 INFO [2014-07-02 14:59:44,998] [Preprocessor.java:241] [main] Processing chromosome C30292 Processing chromosome C30292 INFO [2014-07-02 14:59:45,001] [Preprocessor.java:241] [main] Processing chromosome C30294 Processing chromosome C30294 INFO [2014-07-02 14:59:45,035] [Preprocessor.java:241] [main] Processing chromosome C30296 Processing chromosome C30296 INFO [2014-07-02 14:59:45,091] [Preprocessor.java:241] [main] Processing chromosome C30300 Processing chromosome C30300 INFO [2014-07-02 14:59:45,116] [Preprocessor.java:241] [main] Processing chromosome C30322 Processing chromosome C30322 INFO [2014-07-02 14:59:45,126] [Preprocessor.java:241] [main] Processing chromosome C30324 Processing chromosome C30324 INFO [2014-07-02 14:59:45,131] [Preprocessor.java:241] [main] Processing chromosome C30332 Processing chromosome C30332 INFO [2014-07-02 14:59:45,143] [Preprocessor.java:241] [main] Processing chromosome C30336 Processing chromosome C30336 INFO [2014-07-02 14:59:45,147] [Preprocessor.java:241] [main] Processing chromosome C30340 Processing chromosome C30340 INFO [2014-07-02 14:59:45,184] [Preprocessor.java:241] [main] Processing chromosome C30344 Processing chromosome C30344 INFO [2014-07-02 14:59:45,187] [Preprocessor.java:241] [main] Processing chromosome C30354 Processing chromosome C30354 INFO [2014-07-02 14:59:45,193] [Preprocessor.java:241] [main] Processing chromosome C30356 Processing chromosome C30356 INFO [2014-07-02 14:59:45,221] [Preprocessor.java:241] [main] Processing chromosome C30362 Processing chromosome C30362 INFO [2014-07-02 14:59:45,241] [Preprocessor.java:241] [main] Processing chromosome C30368 Processing chromosome C30368 INFO [2014-07-02 14:59:45,252] [Preprocessor.java:241] [main] Processing chromosome C30398 Processing chromosome C30398 INFO [2014-07-02 14:59:45,267] [Preprocessor.java:241] [main] Processing chromosome C30414 Processing chromosome C30414 INFO [2014-07-02 14:59:45,291] [Preprocessor.java:241] [main] Processing chromosome C30426 Processing chromosome C30426 INFO [2014-07-02 14:59:45,309] [Preprocessor.java:241] [main] Processing chromosome C30430 Processing chromosome C30430 INFO [2014-07-02 14:59:45,342] [Preprocessor.java:241] [main] Processing chromosome C30434 Processing chromosome C30434 INFO [2014-07-02 14:59:45,357] [Preprocessor.java:241] [main] Processing chromosome C30444 Processing chromosome C30444 INFO [2014-07-02 14:59:45,369] [Preprocessor.java:241] [main] Processing chromosome C30458 Processing chromosome C30458 INFO [2014-07-02 14:59:45,383] [Preprocessor.java:241] [main] Processing chromosome C30460 Processing chromosome C30460 INFO [2014-07-02 14:59:45,392] [Preprocessor.java:241] [main] Processing chromosome C30472 Processing chromosome C30472 INFO [2014-07-02 14:59:45,412] [Preprocessor.java:241] [main] Processing chromosome C30476 Processing chromosome C30476 INFO [2014-07-02 14:59:45,443] [Preprocessor.java:241] [main] Processing chromosome C30482 Processing chromosome C30482 INFO [2014-07-02 14:59:45,451] [Preprocessor.java:241] [main] Processing chromosome C30496 Processing chromosome C30496 INFO [2014-07-02 14:59:45,478] [Preprocessor.java:241] [main] Processing chromosome C30498 Processing chromosome C30498 INFO [2014-07-02 14:59:45,502] [Preprocessor.java:241] [main] Processing chromosome C30500 Processing chromosome C30500 INFO [2014-07-02 14:59:45,524] [Preprocessor.java:241] [main] Processing chromosome C30504 Processing chromosome C30504 INFO [2014-07-02 14:59:45,534] [Preprocessor.java:241] [main] Processing chromosome C30506 Processing chromosome C30506 INFO [2014-07-02 14:59:45,563] [Preprocessor.java:241] [main] Processing chromosome C30508 Processing chromosome C30508 INFO [2014-07-02 14:59:45,580] [Preprocessor.java:241] [main] Processing chromosome C30514 Processing chromosome C30514 INFO [2014-07-02 14:59:45,628] [Preprocessor.java:241] [main] Processing chromosome C30522 Processing chromosome C30522 INFO [2014-07-02 14:59:45,652] [Preprocessor.java:241] [main] Processing chromosome C30526 Processing chromosome C30526 INFO [2014-07-02 14:59:45,670] [Preprocessor.java:241] [main] Processing chromosome C30534 Processing chromosome C30534 INFO [2014-07-02 14:59:45,682] [Preprocessor.java:241] [main] Processing chromosome C30538 Processing chromosome C30538 INFO [2014-07-02 14:59:45,689] [Preprocessor.java:241] [main] Processing chromosome C30560 Processing chromosome C30560 INFO [2014-07-02 14:59:45,694] [Preprocessor.java:241] [main] Processing chromosome C30566 Processing chromosome C30566 INFO [2014-07-02 14:59:45,726] [Preprocessor.java:241] [main] Processing chromosome C30570 Processing chromosome C30570 INFO [2014-07-02 14:59:45,755] [Preprocessor.java:241] [main] Processing chromosome C30576 Processing chromosome C30576 INFO [2014-07-02 14:59:45,764] [Preprocessor.java:241] [main] Processing chromosome C30582 Processing chromosome C30582 INFO [2014-07-02 14:59:45,778] [Preprocessor.java:241] [main] Processing chromosome C30584 Processing chromosome C30584 INFO [2014-07-02 14:59:45,804] [Preprocessor.java:241] [main] Processing chromosome C30592 Processing chromosome C30592 INFO [2014-07-02 14:59:45,809] [Preprocessor.java:241] [main] Processing chromosome C30608 Processing chromosome C30608 INFO [2014-07-02 14:59:45,820] [Preprocessor.java:241] [main] Processing chromosome C30620 Processing chromosome C30620 INFO [2014-07-02 14:59:45,838] [Preprocessor.java:241] [main] Processing chromosome C30622 Processing chromosome C30622 INFO [2014-07-02 14:59:45,840] [Preprocessor.java:241] [main] Processing chromosome C30632 Processing chromosome C30632 INFO [2014-07-02 14:59:45,864] [Preprocessor.java:241] [main] Processing chromosome C30650 Processing chromosome C30650 INFO [2014-07-02 14:59:45,868] [Preprocessor.java:241] [main] Processing chromosome C30662 Processing chromosome C30662 INFO [2014-07-02 14:59:45,870] [Preprocessor.java:241] [main] Processing chromosome C30668 Processing chromosome C30668 INFO [2014-07-02 14:59:45,875] [Preprocessor.java:241] [main] Processing chromosome C30680 Processing chromosome C30680 INFO [2014-07-02 14:59:45,919] [Preprocessor.java:241] [main] Processing chromosome C30686 Processing chromosome C30686 INFO [2014-07-02 14:59:45,924] [Preprocessor.java:241] [main] Processing chromosome C30694 Processing chromosome C30694 INFO [2014-07-02 14:59:45,930] [Preprocessor.java:241] [main] Processing chromosome C30708 Processing chromosome C30708 INFO [2014-07-02 14:59:45,939] [Preprocessor.java:241] [main] Processing chromosome C30724 Processing chromosome C30724 INFO [2014-07-02 14:59:45,982] [Preprocessor.java:241] [main] Processing chromosome C30728 Processing chromosome C30728 INFO [2014-07-02 14:59:45,989] [Preprocessor.java:241] [main] Processing chromosome C30736 Processing chromosome C30736 INFO [2014-07-02 14:59:45,995] [Preprocessor.java:241] [main] Processing chromosome C30746 Processing chromosome C30746 INFO [2014-07-02 14:59:46,028] [Preprocessor.java:241] [main] Processing chromosome C30752 Processing chromosome C30752 INFO [2014-07-02 14:59:46,031] [Preprocessor.java:241] [main] Processing chromosome C30754 Processing chromosome C30754 INFO [2014-07-02 14:59:46,071] [Preprocessor.java:241] [main] Processing chromosome C30756 Processing chromosome C30756 INFO [2014-07-02 14:59:46,077] [Preprocessor.java:241] [main] Processing chromosome C30766 Processing chromosome C30766 INFO [2014-07-02 14:59:46,083] [Preprocessor.java:241] [main] Processing chromosome C30768 Processing chromosome C30768 INFO [2014-07-02 14:59:46,092] [Preprocessor.java:241] [main] Processing chromosome C30770 Processing chromosome C30770 INFO [2014-07-02 14:59:46,111] [Preprocessor.java:241] [main] Processing chromosome C30792 Processing chromosome C30792 INFO [2014-07-02 14:59:46,123] [Preprocessor.java:241] [main] Processing chromosome C30796 Processing chromosome C30796 INFO [2014-07-02 14:59:46,164] [Preprocessor.java:241] [main] Processing chromosome C30800 Processing chromosome C30800 INFO [2014-07-02 14:59:46,174] [Preprocessor.java:241] [main] Processing chromosome C30802 Processing chromosome C30802 INFO [2014-07-02 14:59:46,187] [Preprocessor.java:241] [main] Processing chromosome C30804 Processing chromosome C30804 INFO [2014-07-02 14:59:46,190] [Preprocessor.java:241] [main] Processing chromosome C30806 Processing chromosome C30806 INFO [2014-07-02 14:59:46,222] [Preprocessor.java:241] [main] Processing chromosome C30816 Processing chromosome C30816 INFO [2014-07-02 14:59:46,248] [Preprocessor.java:241] [main] Processing chromosome C30820 Processing chromosome C30820 INFO [2014-07-02 14:59:46,254] [Preprocessor.java:241] [main] Processing chromosome C30832 Processing chromosome C30832 INFO [2014-07-02 14:59:46,256] [Preprocessor.java:241] [main] Processing chromosome C30848 Processing chromosome C30848 INFO [2014-07-02 14:59:46,274] [Preprocessor.java:241] [main] Processing chromosome C30852 Processing chromosome C30852 INFO [2014-07-02 14:59:46,320] [Preprocessor.java:241] [main] Processing chromosome C30862 Processing chromosome C30862 INFO [2014-07-02 14:59:46,340] [Preprocessor.java:241] [main] Processing chromosome C30864 Processing chromosome C30864 INFO [2014-07-02 14:59:46,344] [Preprocessor.java:241] [main] Processing chromosome C30870 Processing chromosome C30870 INFO [2014-07-02 14:59:46,354] [Preprocessor.java:241] [main] Processing chromosome C30874 Processing chromosome C30874 INFO [2014-07-02 14:59:46,390] [Preprocessor.java:241] [main] Processing chromosome C30882 Processing chromosome C30882 INFO [2014-07-02 14:59:46,401] [Preprocessor.java:241] [main] Processing chromosome C30886 Processing chromosome C30886 INFO [2014-07-02 14:59:46,408] [Preprocessor.java:241] [main] Processing chromosome C30898 Processing chromosome C30898 INFO [2014-07-02 14:59:46,420] [Preprocessor.java:241] [main] Processing chromosome C30908 Processing chromosome C30908 INFO [2014-07-02 14:59:46,441] [Preprocessor.java:241] [main] Processing chromosome C30924 Processing chromosome C30924 INFO [2014-07-02 14:59:46,452] [Preprocessor.java:241] [main] Processing chromosome C30946 Processing chromosome C30946 INFO [2014-07-02 14:59:46,465] [Preprocessor.java:241] [main] Processing chromosome C30954 Processing chromosome C30954 INFO [2014-07-02 14:59:46,480] [Preprocessor.java:241] [main] Processing chromosome C30956 Processing chromosome C30956 INFO [2014-07-02 14:59:46,486] [Preprocessor.java:241] [main] Processing chromosome C30958 Processing chromosome C30958 INFO [2014-07-02 14:59:46,499] [Preprocessor.java:241] [main] Processing chromosome C30966 Processing chromosome C30966 INFO [2014-07-02 14:59:46,528] [Preprocessor.java:241] [main] Processing chromosome C30974 Processing chromosome C30974 INFO [2014-07-02 14:59:46,566] [Preprocessor.java:241] [main] Processing chromosome C30982 Processing chromosome C30982 INFO [2014-07-02 14:59:46,582] [Preprocessor.java:241] [main] Processing chromosome C30988 Processing chromosome C30988 INFO [2014-07-02 14:59:46,593] [Preprocessor.java:241] [main] Processing chromosome C30994 Processing chromosome C30994 INFO [2014-07-02 14:59:46,609] [Preprocessor.java:241] [main] Processing chromosome C30998 Processing chromosome C30998 INFO [2014-07-02 14:59:46,626] [Preprocessor.java:241] [main] Processing chromosome C31004 Processing chromosome C31004 INFO [2014-07-02 14:59:46,637] [Preprocessor.java:241] [main] Processing chromosome C31012 Processing chromosome C31012 INFO [2014-07-02 14:59:46,661] [Preprocessor.java:241] [main] Processing chromosome C31020 Processing chromosome C31020 INFO [2014-07-02 14:59:46,690] [Preprocessor.java:241] [main] Processing chromosome C31022 Processing chromosome C31022 INFO [2014-07-02 14:59:46,693] [Preprocessor.java:241] [main] Processing chromosome C31036 Processing chromosome C31036 INFO [2014-07-02 14:59:46,716] [Preprocessor.java:241] [main] Processing chromosome C31056 Processing chromosome C31056 INFO [2014-07-02 14:59:46,733] [Preprocessor.java:241] [main] Processing chromosome C31060 Processing chromosome C31060 INFO [2014-07-02 14:59:46,768] [Preprocessor.java:241] [main] Processing chromosome C31062 Processing chromosome C31062 INFO [2014-07-02 14:59:46,793] [Preprocessor.java:241] [main] Processing chromosome C31070 Processing chromosome C31070 INFO [2014-07-02 14:59:46,805] [Preprocessor.java:241] [main] Processing chromosome C31072 Processing chromosome C31072 INFO [2014-07-02 14:59:46,809] [Preprocessor.java:241] [main] Processing chromosome C31096 Processing chromosome C31096 INFO [2014-07-02 14:59:46,831] [Preprocessor.java:241] [main] Processing chromosome C31106 Processing chromosome C31106 INFO [2014-07-02 14:59:46,865] [Preprocessor.java:241] [main] Processing chromosome C31130 Processing chromosome C31130 INFO [2014-07-02 14:59:46,894] [Preprocessor.java:241] [main] Processing chromosome C31132 Processing chromosome C31132 INFO [2014-07-02 14:59:46,918] [Preprocessor.java:241] [main] Processing chromosome C31144 Processing chromosome C31144 INFO [2014-07-02 14:59:46,923] [Preprocessor.java:241] [main] Processing chromosome C31156 Processing chromosome C31156 INFO [2014-07-02 14:59:46,928] [Preprocessor.java:241] [main] Processing chromosome C31176 Processing chromosome C31176 INFO [2014-07-02 14:59:46,933] [Preprocessor.java:241] [main] Processing chromosome C31202 Processing chromosome C31202 INFO [2014-07-02 14:59:46,937] [Preprocessor.java:241] [main] Processing chromosome C31242 Processing chromosome C31242 INFO [2014-07-02 14:59:46,943] [Preprocessor.java:241] [main] Processing chromosome C31246 Processing chromosome C31246 INFO [2014-07-02 14:59:46,948] [Preprocessor.java:241] [main] Processing chromosome C31256 Processing chromosome C31256 INFO [2014-07-02 14:59:46,966] [Preprocessor.java:241] [main] Processing chromosome C31260 Processing chromosome C31260 INFO [2014-07-02 14:59:46,988] [Preprocessor.java:241] [main] Processing chromosome C31262 Processing chromosome C31262 INFO [2014-07-02 14:59:47,009] [Preprocessor.java:241] [main] Processing chromosome C31264 Processing chromosome C31264 INFO [2014-07-02 14:59:47,020] [Preprocessor.java:241] [main] Processing chromosome C31270 Processing chromosome C31270 INFO [2014-07-02 14:59:47,030] [Preprocessor.java:241] [main] Processing chromosome C31278 Processing chromosome C31278 INFO [2014-07-02 14:59:47,039] [Preprocessor.java:241] [main] Processing chromosome C31292 Processing chromosome C31292 INFO [2014-07-02 14:59:47,042] [Preprocessor.java:241] [main] Processing chromosome C31304 Processing chromosome C31304 INFO [2014-07-02 14:59:47,052] [Preprocessor.java:241] [main] Processing chromosome C31322 Processing chromosome C31322 INFO [2014-07-02 14:59:47,068] [Preprocessor.java:241] [main] Processing chromosome C31324 Processing chromosome C31324 INFO [2014-07-02 14:59:47,082] [Preprocessor.java:241] [main] Processing chromosome C31336 Processing chromosome C31336 INFO [2014-07-02 14:59:47,101] [Preprocessor.java:241] [main] Processing chromosome C31340 Processing chromosome C31340 INFO [2014-07-02 14:59:47,109] [Preprocessor.java:241] [main] Processing chromosome C31346 Processing chromosome C31346 INFO [2014-07-02 14:59:47,119] [Preprocessor.java:241] [main] Processing chromosome C31354 Processing chromosome C31354 INFO [2014-07-02 14:59:47,153] [Preprocessor.java:241] [main] Processing chromosome C31366 Processing chromosome C31366 INFO [2014-07-02 14:59:47,158] [Preprocessor.java:241] [main] Processing chromosome C31370 Processing chromosome C31370 INFO [2014-07-02 14:59:47,165] [Preprocessor.java:241] [main] Processing chromosome C31380 Processing chromosome C31380 INFO [2014-07-02 14:59:47,174] [Preprocessor.java:241] [main] Processing chromosome C31386 Processing chromosome C31386 INFO [2014-07-02 14:59:47,182] [Preprocessor.java:241] [main] Processing chromosome C31390 Processing chromosome C31390 INFO [2014-07-02 14:59:47,197] [Preprocessor.java:241] [main] Processing chromosome C31396 Processing chromosome C31396 INFO [2014-07-02 14:59:47,204] [Preprocessor.java:241] [main] Processing chromosome C31398 Processing chromosome C31398 INFO [2014-07-02 14:59:47,206] [Preprocessor.java:241] [main] Processing chromosome C31400 Processing chromosome C31400 INFO [2014-07-02 14:59:47,231] [Preprocessor.java:241] [main] Processing chromosome C31408 Processing chromosome C31408 INFO [2014-07-02 14:59:47,254] [Preprocessor.java:241] [main] Processing chromosome C31410 Processing chromosome C31410 INFO [2014-07-02 14:59:47,264] [Preprocessor.java:241] [main] Processing chromosome C31414 Processing chromosome C31414 INFO [2014-07-02 14:59:47,278] [Preprocessor.java:241] [main] Processing chromosome C31446 Processing chromosome C31446 INFO [2014-07-02 14:59:47,281] [Preprocessor.java:241] [main] Processing chromosome C3145 Processing chromosome C3145 INFO [2014-07-02 14:59:47,311] [Preprocessor.java:241] [main] Processing chromosome C31458 Processing chromosome C31458 INFO [2014-07-02 14:59:47,369] [Preprocessor.java:241] [main] Processing chromosome C31460 Processing chromosome C31460 INFO [2014-07-02 14:59:47,392] [Preprocessor.java:241] [main] Processing chromosome C31466 Processing chromosome C31466 INFO [2014-07-02 14:59:47,406] [Preprocessor.java:241] [main] Processing chromosome C31482 Processing chromosome C31482 INFO [2014-07-02 14:59:47,411] [Preprocessor.java:241] [main] Processing chromosome C31486 Processing chromosome C31486 INFO [2014-07-02 14:59:47,414] [Preprocessor.java:241] [main] Processing chromosome C31488 Processing chromosome C31488 INFO [2014-07-02 14:59:47,462] [Preprocessor.java:241] [main] Processing chromosome C31500 Processing chromosome C31500 INFO [2014-07-02 14:59:47,479] [Preprocessor.java:241] [main] Processing chromosome C31504 Processing chromosome C31504 INFO [2014-07-02 14:59:47,501] [Preprocessor.java:241] [main] Processing chromosome C31510 Processing chromosome C31510 INFO [2014-07-02 14:59:47,522] [Preprocessor.java:241] [main] Processing chromosome C31526 Processing chromosome C31526 INFO [2014-07-02 14:59:47,543] [Preprocessor.java:241] [main] Processing chromosome C31542 Processing chromosome C31542 INFO [2014-07-02 14:59:47,554] [Preprocessor.java:241] [main] Processing chromosome C31546 Processing chromosome C31546 INFO [2014-07-02 14:59:47,577] [Preprocessor.java:241] [main] Processing chromosome C31564 Processing chromosome C31564 INFO [2014-07-02 14:59:47,593] [Preprocessor.java:241] [main] Processing chromosome C31572 Processing chromosome C31572 INFO [2014-07-02 14:59:47,609] [Preprocessor.java:241] [main] Processing chromosome C31574 Processing chromosome C31574 INFO [2014-07-02 14:59:47,612] [Preprocessor.java:241] [main] Processing chromosome C31584 Processing chromosome C31584 INFO [2014-07-02 14:59:47,772] [Preprocessor.java:241] [main] Processing chromosome C31590 Processing chromosome C31590 INFO [2014-07-02 14:59:47,780] [Preprocessor.java:241] [main] Processing chromosome C31602 Processing chromosome C31602 INFO [2014-07-02 14:59:47,783] [Preprocessor.java:241] [main] Processing chromosome C31626 Processing chromosome C31626 INFO [2014-07-02 14:59:47,796] [Preprocessor.java:241] [main] Processing chromosome C31630 Processing chromosome C31630 INFO [2014-07-02 14:59:47,805] [Preprocessor.java:241] [main] Processing chromosome C31632 Processing chromosome C31632 INFO [2014-07-02 14:59:47,812] [Preprocessor.java:241] [main] Processing chromosome C31644 Processing chromosome C31644 INFO [2014-07-02 14:59:47,859] [Preprocessor.java:241] [main] Processing chromosome C31654 Processing chromosome C31654 INFO [2014-07-02 14:59:47,873] [Preprocessor.java:241] [main] Processing chromosome C31668 Processing chromosome C31668 INFO [2014-07-02 14:59:47,880] [Preprocessor.java:241] [main] Processing chromosome C31694 Processing chromosome C31694 INFO [2014-07-02 14:59:47,901] [Preprocessor.java:241] [main] Processing chromosome C31698 Processing chromosome C31698 INFO [2014-07-02 14:59:47,906] [Preprocessor.java:241] [main] Processing chromosome C31706 Processing chromosome C31706 INFO [2014-07-02 14:59:47,924] [Preprocessor.java:241] [main] Processing chromosome C31714 Processing chromosome C31714 INFO [2014-07-02 14:59:47,935] [Preprocessor.java:241] [main] Processing chromosome C31724 Processing chromosome C31724 INFO [2014-07-02 14:59:47,954] [Preprocessor.java:241] [main] Processing chromosome C31730 Processing chromosome C31730 INFO [2014-07-02 14:59:47,985] [Preprocessor.java:241] [main] Processing chromosome C31738 Processing chromosome C31738 INFO [2014-07-02 14:59:48,002] [Preprocessor.java:241] [main] Processing chromosome C31746 Processing chromosome C31746 INFO [2014-07-02 14:59:48,019] [Preprocessor.java:241] [main] Processing chromosome C3175 Processing chromosome C3175 INFO [2014-07-02 14:59:48,118] [Preprocessor.java:241] [main] Processing chromosome C31762 Processing chromosome C31762 INFO [2014-07-02 14:59:48,166] [Preprocessor.java:241] [main] Processing chromosome C31776 Processing chromosome C31776 INFO [2014-07-02 14:59:48,179] [Preprocessor.java:241] [main] Processing chromosome C31778 Processing chromosome C31778 INFO [2014-07-02 14:59:48,210] [Preprocessor.java:241] [main] Processing chromosome C31806 Processing chromosome C31806 INFO [2014-07-02 14:59:48,221] [Preprocessor.java:241] [main] Processing chromosome C31808 Processing chromosome C31808 INFO [2014-07-02 14:59:48,244] [Preprocessor.java:241] [main] Processing chromosome C31814 Processing chromosome C31814 INFO [2014-07-02 14:59:48,261] [Preprocessor.java:241] [main] Processing chromosome C31828 Processing chromosome C31828 INFO [2014-07-02 14:59:48,293] [Preprocessor.java:241] [main] Processing chromosome C3183 Processing chromosome C3183 INFO [2014-07-02 14:59:48,352] [Preprocessor.java:241] [main] Processing chromosome C31832 Processing chromosome C31832 INFO [2014-07-02 14:59:48,372] [Preprocessor.java:241] [main] Processing chromosome C31838 Processing chromosome C31838 INFO [2014-07-02 14:59:48,376] [Preprocessor.java:241] [main] Processing chromosome C31840 Processing chromosome C31840 INFO [2014-07-02 14:59:48,385] [Preprocessor.java:241] [main] Processing chromosome C31846 Processing chromosome C31846 INFO [2014-07-02 14:59:48,391] [Preprocessor.java:241] [main] Processing chromosome C31876 Processing chromosome C31876 INFO [2014-07-02 14:59:48,398] [Preprocessor.java:241] [main] Processing chromosome C31882 Processing chromosome C31882 INFO [2014-07-02 14:59:48,417] [Preprocessor.java:241] [main] Processing chromosome C31884 Processing chromosome C31884 INFO [2014-07-02 14:59:48,428] [Preprocessor.java:241] [main] Processing chromosome C31896 Processing chromosome C31896 INFO [2014-07-02 14:59:48,453] [Preprocessor.java:241] [main] Processing chromosome C31902 Processing chromosome C31902 INFO [2014-07-02 14:59:48,465] [Preprocessor.java:241] [main] Processing chromosome C31910 Processing chromosome C31910 INFO [2014-07-02 14:59:48,484] [Preprocessor.java:241] [main] Processing chromosome C31912 Processing chromosome C31912 INFO [2014-07-02 14:59:48,490] [Preprocessor.java:241] [main] Processing chromosome C31940 Processing chromosome C31940 INFO [2014-07-02 14:59:48,496] [Preprocessor.java:241] [main] Processing chromosome C31964 Processing chromosome C31964 INFO [2014-07-02 14:59:48,525] [Preprocessor.java:241] [main] Processing chromosome C31968 Processing chromosome C31968 INFO [2014-07-02 14:59:48,528] [Preprocessor.java:241] [main] Processing chromosome C3197 Processing chromosome C3197 INFO [2014-07-02 14:59:48,588] [Preprocessor.java:241] [main] Processing chromosome C31978 Processing chromosome C31978 INFO [2014-07-02 14:59:48,596] [Preprocessor.java:241] [main] Processing chromosome C31982 Processing chromosome C31982 INFO [2014-07-02 14:59:48,600] [Preprocessor.java:241] [main] Processing chromosome C31986 Processing chromosome C31986 INFO [2014-07-02 14:59:48,629] [Preprocessor.java:241] [main] Processing chromosome C31988 Processing chromosome C31988 INFO [2014-07-02 14:59:48,669] [Preprocessor.java:241] [main] Processing chromosome C31996 Processing chromosome C31996 INFO [2014-07-02 14:59:48,691] [Preprocessor.java:241] [main] Processing chromosome C32002 Processing chromosome C32002 INFO [2014-07-02 14:59:48,704] [Preprocessor.java:241] [main] Processing chromosome C32006 Processing chromosome C32006 INFO [2014-07-02 14:59:48,716] [Preprocessor.java:241] [main] Processing chromosome C32026 Processing chromosome C32026 INFO [2014-07-02 14:59:48,729] [Preprocessor.java:241] [main] Processing chromosome C32028 Processing chromosome C32028 INFO [2014-07-02 14:59:48,738] [Preprocessor.java:241] [main] Processing chromosome C32054 Processing chromosome C32054 INFO [2014-07-02 14:59:48,759] [Preprocessor.java:241] [main] Processing chromosome C32056 Processing chromosome C32056 INFO [2014-07-02 14:59:48,764] [Preprocessor.java:241] [main] Processing chromosome C32082 Processing chromosome C32082 INFO [2014-07-02 14:59:48,822] [Preprocessor.java:241] [main] Processing chromosome C32084 Processing chromosome C32084 INFO [2014-07-02 14:59:48,865] [Preprocessor.java:241] [main] Processing chromosome C32088 Processing chromosome C32088 INFO [2014-07-02 14:59:48,870] [Preprocessor.java:241] [main] Processing chromosome C32098 Processing chromosome C32098 INFO [2014-07-02 14:59:48,880] [Preprocessor.java:241] [main] Processing chromosome C32106 Processing chromosome C32106 INFO [2014-07-02 14:59:48,882] [Preprocessor.java:241] [main] Processing chromosome C32108 Processing chromosome C32108 INFO [2014-07-02 14:59:48,890] [Preprocessor.java:241] [main] Processing chromosome C32110 Processing chromosome C32110 INFO [2014-07-02 14:59:48,915] [Preprocessor.java:241] [main] Processing chromosome C32122 Processing chromosome C32122 INFO [2014-07-02 14:59:48,925] [Preprocessor.java:241] [main] Processing chromosome C32130 Processing chromosome C32130 INFO [2014-07-02 14:59:48,928] [Preprocessor.java:241] [main] Processing chromosome C32150 Processing chromosome C32150 INFO [2014-07-02 14:59:48,933] [Preprocessor.java:241] [main] Processing chromosome C32156 Processing chromosome C32156 INFO [2014-07-02 14:59:48,966] [Preprocessor.java:241] [main] Processing chromosome C32176 Processing chromosome C32176 INFO [2014-07-02 14:59:48,985] [Preprocessor.java:241] [main] Processing chromosome C32184 Processing chromosome C32184 INFO [2014-07-02 14:59:48,996] [Preprocessor.java:241] [main] Processing chromosome C32186 Processing chromosome C32186 INFO [2014-07-02 14:59:49,004] [Preprocessor.java:241] [main] Processing chromosome C32196 Processing chromosome C32196 INFO [2014-07-02 14:59:49,036] [Preprocessor.java:241] [main] Processing chromosome C32216 Processing chromosome C32216 INFO [2014-07-02 14:59:49,114] [Preprocessor.java:241] [main] Processing chromosome C32222 Processing chromosome C32222 INFO [2014-07-02 14:59:49,133] [Preprocessor.java:241] [main] Processing chromosome C32224 Processing chromosome C32224 INFO [2014-07-02 14:59:49,154] [Preprocessor.java:241] [main] Processing chromosome C32228 Processing chromosome C32228 INFO [2014-07-02 14:59:49,176] [Preprocessor.java:241] [main] Processing chromosome C32240 Processing chromosome C32240 INFO [2014-07-02 14:59:49,193] [Preprocessor.java:241] [main] Processing chromosome C32242 Processing chromosome C32242 INFO [2014-07-02 14:59:49,203] [Preprocessor.java:241] [main] Processing chromosome C32246 Processing chromosome C32246 INFO [2014-07-02 14:59:49,227] [Preprocessor.java:241] [main] Processing chromosome C3225 Processing chromosome C3225 INFO [2014-07-02 14:59:49,259] [Preprocessor.java:241] [main] Processing chromosome C32260 Processing chromosome C32260 INFO [2014-07-02 14:59:49,287] [Preprocessor.java:241] [main] Processing chromosome C32264 Processing chromosome C32264 INFO [2014-07-02 14:59:49,308] [Preprocessor.java:241] [main] Processing chromosome C32270 Processing chromosome C32270 INFO [2014-07-02 14:59:49,314] [Preprocessor.java:241] [main] Processing chromosome C32272 Processing chromosome C32272 INFO [2014-07-02 14:59:49,330] [Preprocessor.java:241] [main] Processing chromosome C32276 Processing chromosome C32276 INFO [2014-07-02 14:59:49,345] [Preprocessor.java:241] [main] Processing chromosome C32278 Processing chromosome C32278 INFO [2014-07-02 14:59:49,350] [Preprocessor.java:241] [main] Processing chromosome C32292 Processing chromosome C32292 INFO [2014-07-02 14:59:49,378] [Preprocessor.java:241] [main] Processing chromosome C3231 Processing chromosome C3231 INFO [2014-07-02 14:59:49,436] [Preprocessor.java:241] [main] Processing chromosome C32314 Processing chromosome C32314 INFO [2014-07-02 14:59:52,083] [Preprocessor.java:241] [main] Processing chromosome C32318 Processing chromosome C32318 INFO [2014-07-02 14:59:52,093] [Preprocessor.java:241] [main] Processing chromosome C32328 Processing chromosome C32328 INFO [2014-07-02 14:59:52,109] [Preprocessor.java:241] [main] Processing chromosome C32332 Processing chromosome C32332 INFO [2014-07-02 14:59:52,112] [Preprocessor.java:241] [main] Processing chromosome C32340 Processing chromosome C32340 INFO [2014-07-02 14:59:52,123] [Preprocessor.java:241] [main] Processing chromosome C32382 Processing chromosome C32382 INFO [2014-07-02 14:59:52,125] [Preprocessor.java:241] [main] Processing chromosome C32390 Processing chromosome C32390 INFO [2014-07-02 14:59:52,129] [Preprocessor.java:241] [main] Processing chromosome C32398 Processing chromosome C32398 INFO [2014-07-02 14:59:52,143] [Preprocessor.java:241] [main] Processing chromosome C32402 Processing chromosome C32402 INFO [2014-07-02 14:59:52,168] [Preprocessor.java:241] [main] Processing chromosome C32406 Processing chromosome C32406 INFO [2014-07-02 14:59:52,194] [Preprocessor.java:241] [main] Processing chromosome C32424 Processing chromosome C32424 INFO [2014-07-02 14:59:52,234] [Preprocessor.java:241] [main] Processing chromosome C32426 Processing chromosome C32426 INFO [2014-07-02 14:59:52,257] [Preprocessor.java:241] [main] Processing chromosome C3243 Processing chromosome C3243 INFO [2014-07-02 14:59:52,312] [Preprocessor.java:241] [main] Processing chromosome C32438 Processing chromosome C32438 INFO [2014-07-02 14:59:52,326] [Preprocessor.java:241] [main] Processing chromosome C32444 Processing chromosome C32444 INFO [2014-07-02 14:59:52,360] [Preprocessor.java:241] [main] Processing chromosome C32458 Processing chromosome C32458 INFO [2014-07-02 14:59:52,364] [Preprocessor.java:241] [main] Processing chromosome C32468 Processing chromosome C32468 INFO [2014-07-02 14:59:52,370] [Preprocessor.java:241] [main] Processing chromosome C32472 Processing chromosome C32472 INFO [2014-07-02 14:59:52,375] [Preprocessor.java:241] [main] Processing chromosome C32482 Processing chromosome C32482 INFO [2014-07-02 14:59:52,387] [Preprocessor.java:241] [main] Processing chromosome C32484 Processing chromosome C32484 INFO [2014-07-02 14:59:52,420] [Preprocessor.java:241] [main] Processing chromosome C3249 Processing chromosome C3249 INFO [2014-07-02 14:59:52,496] [Preprocessor.java:241] [main] Processing chromosome C32512 Processing chromosome C32512 INFO [2014-07-02 14:59:52,528] [Preprocessor.java:241] [main] Processing chromosome C32516 Processing chromosome C32516 INFO [2014-07-02 14:59:52,544] [Preprocessor.java:241] [main] Processing chromosome C32532 Processing chromosome C32532 INFO [2014-07-02 14:59:52,547] [Preprocessor.java:241] [main] Processing chromosome C32536 Processing chromosome C32536 INFO [2014-07-02 14:59:52,565] [Preprocessor.java:241] [main] Processing chromosome C32542 Processing chromosome C32542 INFO [2014-07-02 14:59:52,583] [Preprocessor.java:241] [main] Processing chromosome C32552 Processing chromosome C32552 INFO [2014-07-02 14:59:52,610] [Preprocessor.java:241] [main] Processing chromosome C32554 Processing chromosome C32554 INFO [2014-07-02 14:59:52,647] [Preprocessor.java:241] [main] Processing chromosome C32568 Processing chromosome C32568 INFO [2014-07-02 14:59:52,657] [Preprocessor.java:241] [main] Processing chromosome C32576 Processing chromosome C32576 INFO [2014-07-02 14:59:52,666] [Preprocessor.java:241] [main] Processing chromosome C32578 Processing chromosome C32578 INFO [2014-07-02 14:59:52,678] [Preprocessor.java:241] [main] Processing chromosome C32582 Processing chromosome C32582 INFO [2014-07-02 14:59:52,681] [Preprocessor.java:241] [main] Processing chromosome C32596 Processing chromosome C32596 INFO [2014-07-02 14:59:52,698] [Preprocessor.java:241] [main] Processing chromosome C32606 Processing chromosome C32606 INFO [2014-07-02 14:59:52,717] [Preprocessor.java:241] [main] Processing chromosome C3261 Processing chromosome C3261 INFO [2014-07-02 14:59:52,799] [Preprocessor.java:241] [main] Processing chromosome C32614 Processing chromosome C32614 INFO [2014-07-02 14:59:52,823] [Preprocessor.java:241] [main] Processing chromosome C32636 Processing chromosome C32636 INFO [2014-07-02 14:59:52,835] [Preprocessor.java:241] [main] Processing chromosome C32644 Processing chromosome C32644 INFO [2014-07-02 14:59:52,851] [Preprocessor.java:241] [main] Processing chromosome C32654 Processing chromosome C32654 INFO [2014-07-02 14:59:52,887] [Preprocessor.java:241] [main] Processing chromosome C32656 Processing chromosome C32656 INFO [2014-07-02 14:59:52,919] [Preprocessor.java:241] [main] Processing chromosome C32660 Processing chromosome C32660 INFO [2014-07-02 14:59:52,946] [Preprocessor.java:241] [main] Processing chromosome C32674 Processing chromosome C32674 INFO [2014-07-02 14:59:52,950] [Preprocessor.java:241] [main] Processing chromosome C32682 Processing chromosome C32682 INFO [2014-07-02 14:59:52,953] [Preprocessor.java:241] [main] Processing chromosome C32694 Processing chromosome C32694 INFO [2014-07-02 14:59:52,971] [Preprocessor.java:241] [main] Processing chromosome C32700 Processing chromosome C32700 INFO [2014-07-02 14:59:52,974] [Preprocessor.java:241] [main] Processing chromosome C32714 Processing chromosome C32714 INFO [2014-07-02 14:59:52,991] [Preprocessor.java:241] [main] Processing chromosome C32728 Processing chromosome C32728 INFO [2014-07-02 14:59:52,998] [Preprocessor.java:241] [main] Processing chromosome C32748 Processing chromosome C32748 INFO [2014-07-02 14:59:53,004] [Preprocessor.java:241] [main] Processing chromosome C32774 Processing chromosome C32774 INFO [2014-07-02 14:59:53,035] [Preprocessor.java:241] [main] Processing chromosome C32778 Processing chromosome C32778 INFO [2014-07-02 14:59:53,046] [Preprocessor.java:241] [main] Processing chromosome C32794 Processing chromosome C32794 INFO [2014-07-02 14:59:53,048] [Preprocessor.java:241] [main] Processing chromosome C32810 Processing chromosome C32810 INFO [2014-07-02 14:59:53,066] [Preprocessor.java:241] [main] Processing chromosome C32812 Processing chromosome C32812 INFO [2014-07-02 14:59:53,088] [Preprocessor.java:241] [main] Processing chromosome C32814 Processing chromosome C32814 INFO [2014-07-02 14:59:53,117] [Preprocessor.java:241] [main] Processing chromosome C32818 Processing chromosome C32818 INFO [2014-07-02 14:59:53,125] [Preprocessor.java:241] [main] Processing chromosome C32838 Processing chromosome C32838 INFO [2014-07-02 14:59:53,128] [Preprocessor.java:241] [main] Processing chromosome C32842 Processing chromosome C32842 INFO [2014-07-02 14:59:53,140] [Preprocessor.java:241] [main] Processing chromosome C32848 Processing chromosome C32848 INFO [2014-07-02 14:59:53,169] [Preprocessor.java:241] [main] Processing chromosome C32884 Processing chromosome C32884 INFO [2014-07-02 14:59:53,189] [Preprocessor.java:241] [main] Processing chromosome C32888 Processing chromosome C32888 INFO [2014-07-02 14:59:53,195] [Preprocessor.java:241] [main] Processing chromosome C32906 Processing chromosome C32906 INFO [2014-07-02 14:59:54,584] [Preprocessor.java:241] [main] Processing chromosome C32914 Processing chromosome C32914 INFO [2014-07-02 14:59:54,594] [Preprocessor.java:241] [main] Processing chromosome C32918 Processing chromosome C32918 INFO [2014-07-02 14:59:54,601] [Preprocessor.java:241] [main] Processing chromosome C32930 Processing chromosome C32930 INFO [2014-07-02 14:59:54,642] [Preprocessor.java:241] [main] Processing chromosome C32966 Processing chromosome C32966 INFO [2014-07-02 14:59:54,646] [Preprocessor.java:241] [main] Processing chromosome C32974 Processing chromosome C32974 INFO [2014-07-02 14:59:54,648] [Preprocessor.java:241] [main] Processing chromosome C32984 Processing chromosome C32984 INFO [2014-07-02 14:59:54,670] [Preprocessor.java:241] [main] Processing chromosome C32986 Processing chromosome C32986 INFO [2014-07-02 14:59:54,676] [Preprocessor.java:241] [main] Processing chromosome C32992 Processing chromosome C32992 INFO [2014-07-02 14:59:54,690] [Preprocessor.java:241] [main] Processing chromosome C32994 Processing chromosome C32994 INFO [2014-07-02 14:59:54,705] [Preprocessor.java:241] [main] Processing chromosome C33024 Processing chromosome C33024 INFO [2014-07-02 14:59:54,712] [Preprocessor.java:241] [main] Processing chromosome C33038 Processing chromosome C33038 INFO [2014-07-02 14:59:54,724] [Preprocessor.java:241] [main] Processing chromosome C33084 Processing chromosome C33084 INFO [2014-07-02 14:59:54,730] [Preprocessor.java:241] [main] Processing chromosome C33102 Processing chromosome C33102 INFO [2014-07-02 14:59:54,768] [Preprocessor.java:241] [main] Processing chromosome C33126 Processing chromosome C33126 INFO [2014-07-02 14:59:54,778] [Preprocessor.java:241] [main] Processing chromosome C33128 Processing chromosome C33128 INFO [2014-07-02 14:59:54,823] [Preprocessor.java:241] [main] Processing chromosome C33136 Processing chromosome C33136 INFO [2014-07-02 14:59:54,842] [Preprocessor.java:241] [main] Processing chromosome C33148 Processing chromosome C33148 INFO [2014-07-02 14:59:54,866] [Preprocessor.java:241] [main] Processing chromosome C33162 Processing chromosome C33162 INFO [2014-07-02 14:59:54,871] [Preprocessor.java:241] [main] Processing chromosome C33172 Processing chromosome C33172 INFO [2014-07-02 14:59:54,879] [Preprocessor.java:241] [main] Processing chromosome C33174 Processing chromosome C33174 INFO [2014-07-02 14:59:54,887] [Preprocessor.java:241] [main] Processing chromosome C33176 Processing chromosome C33176 INFO [2014-07-02 14:59:54,891] [Preprocessor.java:241] [main] Processing chromosome C33182 Processing chromosome C33182 INFO [2014-07-02 14:59:54,894] [Preprocessor.java:241] [main] Processing chromosome C33188 Processing chromosome C33188 INFO [2014-07-02 14:59:54,899] [Preprocessor.java:241] [main] Processing chromosome C33200 Processing chromosome C33200 INFO [2014-07-02 14:59:54,904] [Preprocessor.java:241] [main] Processing chromosome C33204 Processing chromosome C33204 INFO [2014-07-02 14:59:54,914] [Preprocessor.java:241] [main] Processing chromosome C33220 Processing chromosome C33220 INFO [2014-07-02 14:59:54,946] [Preprocessor.java:241] [main] Processing chromosome C33222 Processing chromosome C33222 INFO [2014-07-02 14:59:54,954] [Preprocessor.java:241] [main] Processing chromosome C33230 Processing chromosome C33230 INFO [2014-07-02 14:59:54,978] [Preprocessor.java:241] [main] Processing chromosome C33236 Processing chromosome C33236 INFO [2014-07-02 14:59:54,997] [Preprocessor.java:241] [main] Processing chromosome C33244 Processing chromosome C33244 INFO [2014-07-02 14:59:55,031] [Preprocessor.java:241] [main] Processing chromosome C33256 Processing chromosome C33256 INFO [2014-07-02 14:59:55,039] [Preprocessor.java:241] [main] Processing chromosome C33260 Processing chromosome C33260 INFO [2014-07-02 14:59:55,072] [Preprocessor.java:241] [main] Processing chromosome C33308 Processing chromosome C33308 INFO [2014-07-02 14:59:55,096] [Preprocessor.java:241] [main] Processing chromosome C33310 Processing chromosome C33310 INFO [2014-07-02 14:59:55,122] [Preprocessor.java:241] [main] Processing chromosome C33320 Processing chromosome C33320 INFO [2014-07-02 14:59:55,139] [Preprocessor.java:241] [main] Processing chromosome C33332 Processing chromosome C33332 INFO [2014-07-02 14:59:55,144] [Preprocessor.java:241] [main] Processing chromosome C33368 Processing chromosome C33368 INFO [2014-07-02 14:59:55,159] [Preprocessor.java:241] [main] Processing chromosome C33378 Processing chromosome C33378 INFO [2014-07-02 14:59:55,167] [Preprocessor.java:241] [main] Processing chromosome C33408 Processing chromosome C33408 INFO [2014-07-02 14:59:55,180] [Preprocessor.java:241] [main] Processing chromosome C33436 Processing chromosome C33436 INFO [2014-07-02 14:59:55,187] [Preprocessor.java:241] [main] Processing chromosome C33442 Processing chromosome C33442 INFO [2014-07-02 14:59:55,211] [Preprocessor.java:241] [main] Processing chromosome C33464 Processing chromosome C33464 INFO [2014-07-02 14:59:55,232] [Preprocessor.java:241] [main] Processing chromosome C33472 Processing chromosome C33472 INFO [2014-07-02 14:59:55,257] [Preprocessor.java:241] [main] Processing chromosome C33478 Processing chromosome C33478 INFO [2014-07-02 14:59:55,274] [Preprocessor.java:241] [main] Processing chromosome C33482 Processing chromosome C33482 INFO [2014-07-02 14:59:55,283] [Preprocessor.java:241] [main] Processing chromosome C33496 Processing chromosome C33496 INFO [2014-07-02 14:59:55,287] [Preprocessor.java:241] [main] Processing chromosome C33510 Processing chromosome C33510 INFO [2014-07-02 14:59:55,317] [Preprocessor.java:241] [main] Processing chromosome C33524 Processing chromosome C33524 INFO [2014-07-02 14:59:55,328] [Preprocessor.java:241] [main] Processing chromosome C3353 Processing chromosome C3353 INFO [2014-07-02 14:59:55,387] [Preprocessor.java:241] [main] Processing chromosome C33534 Processing chromosome C33534 INFO [2014-07-02 14:59:55,402] [Preprocessor.java:241] [main] Processing chromosome C33560 Processing chromosome C33560 INFO [2014-07-02 14:59:55,409] [Preprocessor.java:241] [main] Processing chromosome C33576 Processing chromosome C33576 INFO [2014-07-02 14:59:55,419] [Preprocessor.java:241] [main] Processing chromosome C33580 Processing chromosome C33580 INFO [2014-07-02 14:59:55,422] [Preprocessor.java:241] [main] Processing chromosome C33592 Processing chromosome C33592 INFO [2014-07-02 14:59:55,436] [Preprocessor.java:241] [main] Processing chromosome C3361 Processing chromosome C3361 INFO [2014-07-02 14:59:55,524] [Preprocessor.java:241] [main] Processing chromosome C33614 Processing chromosome C33614 INFO [2014-07-02 14:59:55,540] [Preprocessor.java:241] [main] Processing chromosome C33646 Processing chromosome C33646 INFO [2014-07-02 14:59:55,551] [Preprocessor.java:241] [main] Processing chromosome C3365 Processing chromosome C3365 INFO [2014-07-02 14:59:55,606] [Preprocessor.java:241] [main] Processing chromosome C33654 Processing chromosome C33654 INFO [2014-07-02 14:59:55,626] [Preprocessor.java:241] [main] Processing chromosome C33658 Processing chromosome C33658 INFO [2014-07-02 14:59:55,638] [Preprocessor.java:241] [main] Processing chromosome C33664 Processing chromosome C33664 INFO [2014-07-02 14:59:55,792] [Preprocessor.java:241] [main] Processing chromosome C33666 Processing chromosome C33666 INFO [2014-07-02 14:59:55,805] [Preprocessor.java:241] [main] Processing chromosome C33688 Processing chromosome C33688 INFO [2014-07-02 14:59:55,841] [Preprocessor.java:241] [main] Processing chromosome C33708 Processing chromosome C33708 INFO [2014-07-02 14:59:55,870] [Preprocessor.java:241] [main] Processing chromosome C33730 Processing chromosome C33730 INFO [2014-07-02 14:59:55,884] [Preprocessor.java:241] [main] Processing chromosome C33734 Processing chromosome C33734 INFO [2014-07-02 14:59:55,889] [Preprocessor.java:241] [main] Processing chromosome C33748 Processing chromosome C33748 INFO [2014-07-02 14:59:55,924] [Preprocessor.java:241] [main] Processing chromosome C33762 Processing chromosome C33762 INFO [2014-07-02 14:59:55,943] [Preprocessor.java:241] [main] Processing chromosome C33776 Processing chromosome C33776 INFO [2014-07-02 14:59:55,968] [Preprocessor.java:241] [main] Processing chromosome C33812 Processing chromosome C33812 INFO [2014-07-02 14:59:55,995] [Preprocessor.java:241] [main] Processing chromosome C33864 Processing chromosome C33864 INFO [2014-07-02 14:59:56,003] [Preprocessor.java:241] [main] Processing chromosome C33892 Processing chromosome C33892 INFO [2014-07-02 14:59:56,015] [Preprocessor.java:241] [main] Processing chromosome C33918 Processing chromosome C33918 INFO [2014-07-02 14:59:56,025] [Preprocessor.java:241] [main] Processing chromosome C33952 Processing chromosome C33952 INFO [2014-07-02 14:59:56,040] [Preprocessor.java:241] [main] Processing chromosome C34010 Processing chromosome C34010 INFO [2014-07-02 14:59:56,075] [Preprocessor.java:241] [main] Processing chromosome C34066 Processing chromosome C34066 INFO [2014-07-02 14:59:56,095] [Preprocessor.java:241] [main] Processing chromosome C3407 Processing chromosome C3407 INFO [2014-07-02 14:59:56,151] [Preprocessor.java:241] [main] Processing chromosome C34072 Processing chromosome C34072 INFO [2014-07-02 14:59:56,157] [Preprocessor.java:241] [main] Processing chromosome C3409 Processing chromosome C3409 INFO [2014-07-02 14:59:56,190] [Preprocessor.java:241] [main] Processing chromosome C34104 Processing chromosome C34104 INFO [2014-07-02 14:59:56,213] [Preprocessor.java:241] [main] Processing chromosome C34110 Processing chromosome C34110 INFO [2014-07-02 14:59:56,218] [Preprocessor.java:241] [main] Processing chromosome C34116 Processing chromosome C34116 INFO [2014-07-02 14:59:56,231] [Preprocessor.java:241] [main] Processing chromosome C34120 Processing chromosome C34120 INFO [2014-07-02 14:59:56,240] [Preprocessor.java:241] [main] Processing chromosome C34122 Processing chromosome C34122 INFO [2014-07-02 14:59:56,254] [Preprocessor.java:241] [main] Processing chromosome C34136 Processing chromosome C34136 INFO [2014-07-02 14:59:56,277] [Preprocessor.java:241] [main] Processing chromosome C3415 Processing chromosome C3415 INFO [2014-07-02 14:59:56,321] [Preprocessor.java:241] [main] Processing chromosome C34158 Processing chromosome C34158 INFO [2014-07-02 14:59:56,382] [Preprocessor.java:241] [main] Processing chromosome C34160 Processing chromosome C34160 INFO [2014-07-02 14:59:56,397] [Preprocessor.java:241] [main] Processing chromosome C34166 Processing chromosome C34166 INFO [2014-07-02 14:59:56,414] [Preprocessor.java:241] [main] Processing chromosome C34174 Processing chromosome C34174 INFO [2014-07-02 14:59:56,425] [Preprocessor.java:241] [main] Processing chromosome C34176 Processing chromosome C34176 INFO [2014-07-02 14:59:56,437] [Preprocessor.java:241] [main] Processing chromosome C3419 Processing chromosome C3419 INFO [2014-07-02 14:59:56,491] [Preprocessor.java:241] [main] Processing chromosome C34200 Processing chromosome C34200 INFO [2014-07-02 14:59:56,512] [Preprocessor.java:241] [main] Processing chromosome C34208 Processing chromosome C34208 INFO [2014-07-02 14:59:56,522] [Preprocessor.java:241] [main] Processing chromosome C34218 Processing chromosome C34218 INFO [2014-07-02 14:59:56,550] [Preprocessor.java:241] [main] Processing chromosome C34226 Processing chromosome C34226 INFO [2014-07-02 14:59:56,564] [Preprocessor.java:241] [main] Processing chromosome C34250 Processing chromosome C34250 INFO [2014-07-02 14:59:56,582] [Preprocessor.java:241] [main] Processing chromosome C34256 Processing chromosome C34256 INFO [2014-07-02 14:59:56,614] [Preprocessor.java:241] [main] Processing chromosome C34270 Processing chromosome C34270 INFO [2014-07-02 14:59:56,649] [Preprocessor.java:241] [main] Processing chromosome C34272 Processing chromosome C34272 INFO [2014-07-02 14:59:56,654] [Preprocessor.java:241] [main] Processing chromosome C34274 Processing chromosome C34274 INFO [2014-07-02 14:59:56,694] [Preprocessor.java:241] [main] Processing chromosome C34286 Processing chromosome C34286 INFO [2014-07-02 14:59:56,732] [Preprocessor.java:241] [main] Processing chromosome C34288 Processing chromosome C34288 INFO [2014-07-02 14:59:56,740] [Preprocessor.java:241] [main] Processing chromosome C34300 Processing chromosome C34300 INFO [2014-07-02 14:59:56,759] [Preprocessor.java:241] [main] Processing chromosome C34310 Processing chromosome C34310 INFO [2014-07-02 14:59:56,771] [Preprocessor.java:241] [main] Processing chromosome C34320 Processing chromosome C34320 INFO [2014-07-02 14:59:56,779] [Preprocessor.java:241] [main] Processing chromosome C34340 Processing chromosome C34340 INFO [2014-07-02 14:59:56,817] [Preprocessor.java:241] [main] Processing chromosome C34372 Processing chromosome C34372 INFO [2014-07-02 14:59:56,826] [Preprocessor.java:241] [main] Processing chromosome C34402 Processing chromosome C34402 INFO [2014-07-02 14:59:58,207] [Preprocessor.java:241] [main] Processing chromosome C34406 Processing chromosome C34406 INFO [2014-07-02 14:59:58,211] [Preprocessor.java:241] [main] Processing chromosome C34408 Processing chromosome C34408 INFO [2014-07-02 14:59:58,220] [Preprocessor.java:241] [main] Processing chromosome C34418 Processing chromosome C34418 INFO [2014-07-02 14:59:58,243] [Preprocessor.java:241] [main] Processing chromosome C34436 Processing chromosome C34436 INFO [2014-07-02 14:59:58,259] [Preprocessor.java:241] [main] Processing chromosome C34444 Processing chromosome C34444 INFO [2014-07-02 14:59:58,290] [Preprocessor.java:241] [main] Processing chromosome C34458 Processing chromosome C34458 INFO [2014-07-02 14:59:58,299] [Preprocessor.java:241] [main] Processing chromosome C34464 Processing chromosome C34464 INFO [2014-07-02 14:59:58,322] [Preprocessor.java:241] [main] Processing chromosome C34466 Processing chromosome C34466 INFO [2014-07-02 14:59:58,327] [Preprocessor.java:241] [main] Processing chromosome C34488 Processing chromosome C34488 INFO [2014-07-02 14:59:58,346] [Preprocessor.java:241] [main] Processing chromosome C3449 Processing chromosome C3449 INFO [2014-07-02 14:59:58,411] [Preprocessor.java:241] [main] Processing chromosome C34496 Processing chromosome C34496 INFO [2014-07-02 14:59:58,440] [Preprocessor.java:241] [main] Processing chromosome C34516 Processing chromosome C34516 INFO [2014-07-02 14:59:58,459] [Preprocessor.java:241] [main] Processing chromosome C34546 Processing chromosome C34546 INFO [2014-07-02 14:59:58,477] [Preprocessor.java:241] [main] Processing chromosome C34550 Processing chromosome C34550 INFO [2014-07-02 14:59:58,510] [Preprocessor.java:241] [main] Processing chromosome C34552 Processing chromosome C34552 INFO [2014-07-02 14:59:58,521] [Preprocessor.java:241] [main] Processing chromosome C34556 Processing chromosome C34556 INFO [2014-07-02 14:59:58,536] [Preprocessor.java:241] [main] Processing chromosome C34562 Processing chromosome C34562 INFO [2014-07-02 14:59:58,542] [Preprocessor.java:241] [main] Processing chromosome C34564 Processing chromosome C34564 INFO [2014-07-02 14:59:58,559] [Preprocessor.java:241] [main] Processing chromosome C34566 Processing chromosome C34566 INFO [2014-07-02 14:59:58,589] [Preprocessor.java:241] [main] Processing chromosome C34600 Processing chromosome C34600 INFO [2014-07-02 14:59:58,626] [Preprocessor.java:241] [main] Processing chromosome C34622 Processing chromosome C34622 INFO [2014-07-02 14:59:58,635] [Preprocessor.java:241] [main] Processing chromosome C34630 Processing chromosome C34630 INFO [2014-07-02 14:59:58,653] [Preprocessor.java:241] [main] Processing chromosome C34634 Processing chromosome C34634 INFO [2014-07-02 14:59:58,656] [Preprocessor.java:241] [main] Processing chromosome C34636 Processing chromosome C34636 INFO [2014-07-02 14:59:58,675] [Preprocessor.java:241] [main] Processing chromosome C34708 Processing chromosome C34708 INFO [2014-07-02 14:59:58,683] [Preprocessor.java:241] [main] Processing chromosome C34712 Processing chromosome C34712 INFO [2014-07-02 14:59:58,756] [Preprocessor.java:241] [main] Processing chromosome C34726 Processing chromosome C34726 INFO [2014-07-02 14:59:58,768] [Preprocessor.java:241] [main] Processing chromosome C34792 Processing chromosome C34792 INFO [2014-07-02 14:59:58,788] [Preprocessor.java:241] [main] Processing chromosome C34798 Processing chromosome C34798 INFO [2014-07-02 14:59:58,816] [Preprocessor.java:241] [main] Processing chromosome C34804 Processing chromosome C34804 INFO [2014-07-02 14:59:58,825] [Preprocessor.java:241] [main] Processing chromosome C34846 Processing chromosome C34846 INFO [2014-07-02 14:59:58,827] [Preprocessor.java:241] [main] Processing chromosome C34856 Processing chromosome C34856 INFO [2014-07-02 14:59:58,834] [Preprocessor.java:241] [main] Processing chromosome C34876 Processing chromosome C34876 INFO [2014-07-02 14:59:58,854] [Preprocessor.java:241] [main] Processing chromosome C34884 Processing chromosome C34884 INFO [2014-07-02 14:59:58,865] [Preprocessor.java:241] [main] Processing chromosome C349 Processing chromosome C349 INFO [2014-07-02 14:59:58,924] [Preprocessor.java:241] [main] Processing chromosome C34902 Processing chromosome C34902 INFO [2014-07-02 14:59:58,937] [Preprocessor.java:241] [main] Processing chromosome C34948 Processing chromosome C34948 INFO [2014-07-02 14:59:58,967] [Preprocessor.java:241] [main] Processing chromosome C35006 Processing chromosome C35006 INFO [2014-07-02 14:59:58,979] [Preprocessor.java:241] [main] Processing chromosome C35028 Processing chromosome C35028 INFO [2014-07-02 14:59:59,003] [Preprocessor.java:241] [main] Processing chromosome C35042 Processing chromosome C35042 INFO [2014-07-02 14:59:59,032] [Preprocessor.java:241] [main] Processing chromosome C35068 Processing chromosome C35068 INFO [2014-07-02 14:59:59,039] [Preprocessor.java:241] [main] Processing chromosome C35134 Processing chromosome C35134 INFO [2014-07-02 14:59:59,045] [Preprocessor.java:241] [main] Processing chromosome C35160 Processing chromosome C35160 INFO [2014-07-02 14:59:59,049] [Preprocessor.java:241] [main] Processing chromosome C35168 Processing chromosome C35168 INFO [2014-07-02 14:59:59,091] [Preprocessor.java:241] [main] Processing chromosome C35172 Processing chromosome C35172 INFO [2014-07-02 15:00:02,036] [Preprocessor.java:241] [main] Processing chromosome C35260 Processing chromosome C35260 INFO [2014-07-02 15:00:02,065] [Preprocessor.java:241] [main] Processing chromosome C35262 Processing chromosome C35262 INFO [2014-07-02 15:00:05,529] [Preprocessor.java:241] [main] Processing chromosome C35282 Processing chromosome C35282 INFO [2014-07-02 15:00:05,551] [Preprocessor.java:241] [main] Processing chromosome C35386 Processing chromosome C35386 INFO [2014-07-02 15:00:05,568] [Preprocessor.java:241] [main] Processing chromosome C35400 Processing chromosome C35400 INFO [2014-07-02 15:00:05,602] [Preprocessor.java:241] [main] Processing chromosome C355 Processing chromosome C355 INFO [2014-07-02 15:00:05,659] [Preprocessor.java:241] [main] Processing chromosome C35502 Processing chromosome C35502 INFO [2014-07-02 15:00:05,663] [Preprocessor.java:241] [main] Processing chromosome C3551 Processing chromosome C3551 INFO [2014-07-02 15:00:05,696] [Preprocessor.java:241] [main] Processing chromosome C35532 Processing chromosome C35532 INFO [2014-07-02 15:00:05,727] [Preprocessor.java:241] [main] Processing chromosome C35548 Processing chromosome C35548 INFO [2014-07-02 15:00:05,750] [Preprocessor.java:241] [main] Processing chromosome C3555 Processing chromosome C3555 INFO [2014-07-02 15:00:05,786] [Preprocessor.java:241] [main] Processing chromosome C35556 Processing chromosome C35556 INFO [2014-07-02 15:00:05,863] [Preprocessor.java:241] [main] Processing chromosome C35564 Processing chromosome C35564 INFO [2014-07-02 15:00:05,878] [Preprocessor.java:241] [main] Processing chromosome C35606 Processing chromosome C35606 INFO [2014-07-02 15:00:05,889] [Preprocessor.java:241] [main] Processing chromosome C35642 Processing chromosome C35642 INFO [2014-07-02 15:00:05,892] [Preprocessor.java:241] [main] Processing chromosome C35646 Processing chromosome C35646 INFO [2014-07-02 15:00:05,899] [Preprocessor.java:241] [main] Processing chromosome C35716 Processing chromosome C35716 INFO [2014-07-02 15:00:05,911] [Preprocessor.java:241] [main] Processing chromosome C35760 Processing chromosome C35760 INFO [2014-07-02 15:00:05,926] [Preprocessor.java:241] [main] Processing chromosome C35776 Processing chromosome C35776 INFO [2014-07-02 15:00:05,971] [Preprocessor.java:241] [main] Processing chromosome C35786 Processing chromosome C35786 INFO [2014-07-02 15:00:05,975] [Preprocessor.java:241] [main] Processing chromosome C3579 Processing chromosome C3579 INFO [2014-07-02 15:00:06,032] [Preprocessor.java:241] [main] Processing chromosome C35794 Processing chromosome C35794 INFO [2014-07-02 15:00:06,059] [Preprocessor.java:241] [main] Processing chromosome C35840 Processing chromosome C35840 INFO [2014-07-02 15:00:06,066] [Preprocessor.java:241] [main] Processing chromosome C35844 Processing chromosome C35844 INFO [2014-07-02 15:00:06,088] [Preprocessor.java:241] [main] Processing chromosome C35952 Processing chromosome C35952 INFO [2014-07-02 15:00:06,100] [Preprocessor.java:241] [main] Processing chromosome C35992 Processing chromosome C35992 INFO [2014-07-02 15:00:06,132] [Preprocessor.java:241] [main] Processing chromosome C36014 Processing chromosome C36014 INFO [2014-07-02 15:00:06,185] [Preprocessor.java:241] [main] Processing chromosome C36028 Processing chromosome C36028 INFO [2014-07-02 15:00:06,200] [Preprocessor.java:241] [main] Processing chromosome C36038 Processing chromosome C36038 INFO [2014-07-02 15:00:06,219] [Preprocessor.java:241] [main] Processing chromosome C3607 Processing chromosome C3607 INFO [2014-07-02 15:00:06,251] [Preprocessor.java:241] [main] Processing chromosome C3611 Processing chromosome C3611 INFO [2014-07-02 15:00:06,326] [Preprocessor.java:241] [main] Processing chromosome C36172 Processing chromosome C36172 INFO [2014-07-02 15:00:06,355] [Preprocessor.java:241] [main] Processing chromosome C3623 Processing chromosome C3623 INFO [2014-07-02 15:00:06,410] [Preprocessor.java:241] [main] Processing chromosome C3627 Processing chromosome C3627 INFO [2014-07-02 15:00:06,473] [Preprocessor.java:241] [main] Processing chromosome C363 Processing chromosome C363 INFO [2014-07-02 15:00:06,531] [Preprocessor.java:241] [main] Processing chromosome C36322 Processing chromosome C36322 INFO [2014-07-02 15:00:06,552] [Preprocessor.java:241] [main] Processing chromosome C3645 Processing chromosome C3645 INFO [2014-07-02 15:00:06,618] [Preprocessor.java:241] [main] Processing chromosome C3647 Processing chromosome C3647 INFO [2014-07-02 15:00:06,652] [Preprocessor.java:241] [main] Processing chromosome C365 Processing chromosome C365 INFO [2014-07-02 15:00:07,124] [Preprocessor.java:241] [main] Processing chromosome C3655 Processing chromosome C3655 INFO [2014-07-02 15:00:07,179] [Preprocessor.java:241] [main] Processing chromosome C36636 Processing chromosome C36636 INFO [2014-07-02 15:00:07,239] [Preprocessor.java:241] [main] Processing chromosome C36680 Processing chromosome C36680 INFO [2014-07-02 15:00:07,262] [Preprocessor.java:241] [main] Processing chromosome C37024 Processing chromosome C37024 INFO [2014-07-02 15:00:07,315] [Preprocessor.java:241] [main] Processing chromosome C3711 Processing chromosome C3711 INFO [2014-07-02 15:00:07,349] [Preprocessor.java:241] [main] Processing chromosome C3721 Processing chromosome C3721 INFO [2014-07-02 15:00:07,405] [Preprocessor.java:241] [main] Processing chromosome C37392 Processing chromosome C37392 INFO [2014-07-02 15:00:07,439] [Preprocessor.java:241] [main] Processing chromosome C3773 Processing chromosome C3773 INFO [2014-07-02 15:00:07,500] [Preprocessor.java:241] [main] Processing chromosome C381 Processing chromosome C381 INFO [2014-07-02 15:00:07,559] [Preprocessor.java:241] [main] Processing chromosome C3813 Processing chromosome C3813 INFO [2014-07-02 15:00:07,618] [Preprocessor.java:241] [main] Processing chromosome C3817 Processing chromosome C3817 INFO [2014-07-02 15:00:07,653] [Preprocessor.java:241] [main] Processing chromosome C3847 Processing chromosome C3847 INFO [2014-07-02 15:00:07,775] [Preprocessor.java:241] [main] Processing chromosome C3863 Processing chromosome C3863 INFO [2014-07-02 15:00:07,832] [Preprocessor.java:241] [main] Processing chromosome C3889 Processing chromosome C3889 INFO [2014-07-02 15:00:07,864] [Preprocessor.java:241] [main] Processing chromosome C3911 Processing chromosome C3911 INFO [2014-07-02 15:00:07,948] [Preprocessor.java:241] [main] Processing chromosome C3945 Processing chromosome C3945 INFO [2014-07-02 15:00:07,979] [Preprocessor.java:241] [main] Processing chromosome C3965 Processing chromosome C3965 INFO [2014-07-02 15:00:08,054] [Preprocessor.java:241] [main] Processing chromosome C4017 Processing chromosome C4017 INFO [2014-07-02 15:00:08,117] [Preprocessor.java:241] [main] Processing chromosome C4021 Processing chromosome C4021 INFO [2014-07-02 15:00:08,183] [Preprocessor.java:241] [main] Processing chromosome C4027 Processing chromosome C4027 INFO [2014-07-02 15:00:08,258] [Preprocessor.java:241] [main] Processing chromosome C4037 Processing chromosome C4037 INFO [2014-07-02 15:00:08,337] [Preprocessor.java:241] [main] Processing chromosome C415 Processing chromosome C415 INFO [2014-07-02 15:00:08,370] [Preprocessor.java:241] [main] Processing chromosome C4221 Processing chromosome C4221 INFO [2014-07-02 15:00:08,421] [Preprocessor.java:241] [main] Processing chromosome C4237 Processing chromosome C4237 INFO [2014-07-02 15:00:08,509] [Preprocessor.java:241] [main] Processing chromosome C4243 Processing chromosome C4243 INFO [2014-07-02 15:00:08,580] [Preprocessor.java:241] [main] Processing chromosome C4251 Processing chromosome C4251 INFO [2014-07-02 15:00:08,611] [Preprocessor.java:241] [main] Processing chromosome C4259 Processing chromosome C4259 INFO [2014-07-02 15:00:08,701] [Preprocessor.java:241] [main] Processing chromosome C4291 Processing chromosome C4291 INFO [2014-07-02 15:00:08,788] [Preprocessor.java:241] [main] Processing chromosome C4301 Processing chromosome C4301 INFO [2014-07-02 15:00:13,632] [Preprocessor.java:241] [main] Processing chromosome C4305 Processing chromosome C4305 INFO [2014-07-02 15:00:13,721] [Preprocessor.java:241] [main] Processing chromosome C4315 Processing chromosome C4315 INFO [2014-07-02 15:00:13,800] [Preprocessor.java:241] [main] Processing chromosome C4395 Processing chromosome C4395 INFO [2014-07-02 15:00:13,840] [Preprocessor.java:241] [main] Processing chromosome C4411 Processing chromosome C4411 INFO [2014-07-02 15:00:13,899] [Preprocessor.java:241] [main] Processing chromosome C4417 Processing chromosome C4417 INFO [2014-07-02 15:00:13,987] [Preprocessor.java:241] [main] Processing chromosome C4419 Processing chromosome C4419 INFO [2014-07-02 15:00:14,060] [Preprocessor.java:241] [main] Processing chromosome C4425 Processing chromosome C4425 INFO [2014-07-02 15:00:14,150] [Preprocessor.java:241] [main] Processing chromosome C4429 Processing chromosome C4429 INFO [2014-07-02 15:00:14,207] [Preprocessor.java:241] [main] Processing chromosome C4431 Processing chromosome C4431 INFO [2014-07-02 15:00:14,277] [Preprocessor.java:241] [main] Processing chromosome C4433 Processing chromosome C4433 INFO [2014-07-02 15:00:14,311] [Preprocessor.java:241] [main] Processing chromosome C4441 Processing chromosome C4441 INFO [2014-07-02 15:00:14,389] [Preprocessor.java:241] [main] Processing chromosome C4449 Processing chromosome C4449 INFO [2014-07-02 15:00:14,453] [Preprocessor.java:241] [main] Processing chromosome C4455 Processing chromosome C4455 INFO [2014-07-02 15:00:14,488] [Preprocessor.java:241] [main] Processing chromosome C4465 Processing chromosome C4465 INFO [2014-07-02 15:00:14,576] [Preprocessor.java:241] [main] Processing chromosome C4467 Processing chromosome C4467 INFO [2014-07-02 15:00:14,658] [Preprocessor.java:241] [main] Processing chromosome C4517 Processing chromosome C4517 INFO [2014-07-02 15:00:14,723] [Preprocessor.java:241] [main] Processing chromosome C4535 Processing chromosome C4535 INFO [2014-07-02 15:00:14,789] [Preprocessor.java:241] [main] Processing chromosome C4553 Processing chromosome C4553 INFO [2014-07-02 15:00:14,849] [Preprocessor.java:241] [main] Processing chromosome C4689 Processing chromosome C4689 INFO [2014-07-02 15:00:14,912] [Preprocessor.java:241] [main] Processing chromosome C4695 Processing chromosome C4695 INFO [2014-07-02 15:00:14,976] [Preprocessor.java:241] [main] Processing chromosome C4701 Processing chromosome C4701 INFO [2014-07-02 15:00:15,033] [Preprocessor.java:241] [main] Processing chromosome C4705 Processing chromosome C4705 INFO [2014-07-02 15:00:15,137] [Preprocessor.java:241] [main] Processing chromosome C4729 Processing chromosome C4729 INFO [2014-07-02 15:00:15,202] [Preprocessor.java:241] [main] Processing chromosome C4755 Processing chromosome C4755 INFO [2014-07-02 15:00:15,265] [Preprocessor.java:241] [main] Processing chromosome C4759 Processing chromosome C4759 INFO [2014-07-02 15:00:15,303] [Preprocessor.java:241] [main] Processing chromosome C4769 Processing chromosome C4769 INFO [2014-07-02 15:00:15,356] [Preprocessor.java:241] [main] Processing chromosome C4773 Processing chromosome C4773 INFO [2014-07-02 15:00:15,435] [Preprocessor.java:241] [main] Processing chromosome C4775 Processing chromosome C4775 INFO [2014-07-02 15:00:15,467] [Preprocessor.java:241] [main] Processing chromosome C4867 Processing chromosome C4867 INFO [2014-07-02 15:00:15,559] [Preprocessor.java:241] [main] Processing chromosome C4873 Processing chromosome C4873 INFO [2014-07-02 15:00:15,648] [Preprocessor.java:241] [main] Processing chromosome C4875 Processing chromosome C4875 INFO [2014-07-02 15:00:15,712] [Preprocessor.java:241] [main] Processing chromosome C4883 Processing chromosome C4883 INFO [2014-07-02 15:00:15,772] [Preprocessor.java:241] [main] Processing chromosome C4893 Processing chromosome C4893 INFO [2014-07-02 15:00:15,839] [Preprocessor.java:241] [main] Processing chromosome C4907 Processing chromosome C4907 INFO [2014-07-02 15:00:15,899] [Preprocessor.java:241] [main] Processing chromosome C4955 Processing chromosome C4955 INFO [2014-07-02 15:00:15,977] [Preprocessor.java:241] [main] Processing chromosome C4969 Processing chromosome C4969 INFO [2014-07-02 15:00:16,041] [Preprocessor.java:241] [main] Processing chromosome C4971 Processing chromosome C4971 INFO [2014-07-02 15:00:16,085] [Preprocessor.java:241] [main] Processing chromosome C4999 Processing chromosome C4999 INFO [2014-07-02 15:00:16,178] [Preprocessor.java:241] [main] Processing chromosome C5077 Processing chromosome C5077 INFO [2014-07-02 15:00:16,232] [Preprocessor.java:241] [main] Processing chromosome C5135 Processing chromosome C5135 INFO [2014-07-02 15:00:16,292] [Preprocessor.java:241] [main] Processing chromosome C5169 Processing chromosome C5169 INFO [2014-07-02 15:00:16,383] [Preprocessor.java:241] [main] Processing chromosome C5175 Processing chromosome C5175 INFO [2014-07-02 15:00:16,416] [Preprocessor.java:241] [main] Processing chromosome C5183 Processing chromosome C5183 INFO [2014-07-02 15:00:16,514] [Preprocessor.java:241] [main] Processing chromosome C5185 Processing chromosome C5185 INFO [2014-07-02 15:00:16,581] [Preprocessor.java:241] [main] Processing chromosome C5189 Processing chromosome C5189 INFO [2014-07-02 15:00:16,616] [Preprocessor.java:241] [main] Processing chromosome C5193 Processing chromosome C5193 INFO [2014-07-02 15:00:16,743] [Preprocessor.java:241] [main] Processing chromosome C5201 Processing chromosome C5201 INFO [2014-07-02 15:00:16,810] [Preprocessor.java:241] [main] Processing chromosome C5203 Processing chromosome C5203 INFO [2014-07-02 15:00:16,847] [Preprocessor.java:241] [main] Processing chromosome C5205 Processing chromosome C5205 INFO [2014-07-02 15:00:16,929] [Preprocessor.java:241] [main] Processing chromosome C523 Processing chromosome C523 INFO [2014-07-02 15:00:16,994] [Preprocessor.java:241] [main] Processing chromosome C5265 Processing chromosome C5265 INFO [2014-07-02 15:00:17,030] [Preprocessor.java:241] [main] Processing chromosome C5325 Processing chromosome C5325 INFO [2014-07-02 15:00:17,086] [Preprocessor.java:241] [main] Processing chromosome C5333 Processing chromosome C5333 INFO [2014-07-02 15:00:17,134] [Preprocessor.java:241] [main] Processing chromosome C5357 Processing chromosome C5357 INFO [2014-07-02 15:00:17,185] [Preprocessor.java:241] [main] Processing chromosome C5363 Processing chromosome C5363 INFO [2014-07-02 15:00:17,245] [Preprocessor.java:241] [main] Processing chromosome C5365 Processing chromosome C5365 INFO [2014-07-02 15:00:17,298] [Preprocessor.java:241] [main] Processing chromosome C539 Processing chromosome C539 INFO [2014-07-02 15:00:17,377] [Preprocessor.java:241] [main] Processing chromosome C5405 Processing chromosome C5405 INFO [2014-07-02 15:00:17,444] [Preprocessor.java:241] [main] Processing chromosome C5411 Processing chromosome C5411 INFO [2014-07-02 15:00:17,503] [Preprocessor.java:241] [main] Processing chromosome C5429 Processing chromosome C5429 INFO [2014-07-02 15:00:17,569] [Preprocessor.java:241] [main] Processing chromosome C543 Processing chromosome C543 INFO [2014-07-02 15:00:17,604] [Preprocessor.java:241] [main] Processing chromosome C55 Processing chromosome C55 INFO [2014-07-02 15:00:17,664] [Preprocessor.java:241] [main] Processing chromosome C551 Processing chromosome C551 INFO [2014-07-02 15:00:17,733] [Preprocessor.java:241] [main] Processing chromosome C5537 Processing chromosome C5537 INFO [2014-07-02 15:00:17,816] [Preprocessor.java:241] [main] Processing chromosome C5545 Processing chromosome C5545 INFO [2014-07-02 15:00:17,890] [Preprocessor.java:241] [main] Processing chromosome C5557 Processing chromosome C5557 INFO [2014-07-02 15:00:17,949] [Preprocessor.java:241] [main] Processing chromosome C5565 Processing chromosome C5565 INFO [2014-07-02 15:00:18,017] [Preprocessor.java:241] [main] Processing chromosome C5593 Processing chromosome C5593 INFO [2014-07-02 15:00:18,074] [Preprocessor.java:241] [main] Processing chromosome C5607 Processing chromosome C5607 INFO [2014-07-02 15:00:18,105] [Preprocessor.java:241] [main] Processing chromosome C5657 Processing chromosome C5657 INFO [2014-07-02 15:00:18,202] [Preprocessor.java:241] [main] Processing chromosome C5659 Processing chromosome C5659 INFO [2014-07-02 15:00:18,272] [Preprocessor.java:241] [main] Processing chromosome C5727 Processing chromosome C5727 INFO [2014-07-02 15:00:18,306] [Preprocessor.java:241] [main] Processing chromosome C5775 Processing chromosome C5775 INFO [2014-07-02 15:00:18,390] [Preprocessor.java:241] [main] Processing chromosome C5777 Processing chromosome C5777 INFO [2014-07-02 15:00:18,452] [Preprocessor.java:241] [main] Processing chromosome C5785 Processing chromosome C5785 INFO [2014-07-02 15:00:18,524] [Preprocessor.java:241] [main] Processing chromosome C5791 Processing chromosome C5791 INFO [2014-07-02 15:00:18,599] [Preprocessor.java:241] [main] Processing chromosome C5805 Processing chromosome C5805 INFO [2014-07-02 15:00:18,682] [Preprocessor.java:241] [main] Processing chromosome C5811 Processing chromosome C5811 INFO [2014-07-02 15:00:18,795] [Preprocessor.java:241] [main] Processing chromosome C5819 Processing chromosome C5819 INFO [2014-07-02 15:00:18,838] [Preprocessor.java:241] [main] Processing chromosome C5827 Processing chromosome C5827 INFO [2014-07-02 15:00:18,947] [Preprocessor.java:241] [main] Processing chromosome C5847 Processing chromosome C5847 INFO [2014-07-02 15:00:19,015] [Preprocessor.java:241] [main] Processing chromosome C5853 Processing chromosome C5853 INFO [2014-07-02 15:00:19,083] [Preprocessor.java:241] [main] Processing chromosome C587 Processing chromosome C587 INFO [2014-07-02 15:00:19,119] [Preprocessor.java:241] [main] Processing chromosome C593 Processing chromosome C593 INFO [2014-07-02 15:00:19,213] [Preprocessor.java:241] [main] Processing chromosome C6015 Processing chromosome C6015 INFO [2014-07-02 15:00:19,275] [Preprocessor.java:241] [main] Processing chromosome C603 Processing chromosome C603 INFO [2014-07-02 15:00:19,330] [Preprocessor.java:241] [main] Processing chromosome C6033 Processing chromosome C6033 INFO [2014-07-02 15:00:19,387] [Preprocessor.java:241] [main] Processing chromosome C6041 Processing chromosome C6041 INFO [2014-07-02 15:00:19,468] [Preprocessor.java:241] [main] Processing chromosome C6049 Processing chromosome C6049 INFO [2014-07-02 15:00:19,502] [Preprocessor.java:241] [main] Processing chromosome C605 Processing chromosome C605 INFO [2014-07-02 15:00:19,560] [Preprocessor.java:241] [main] Processing chromosome C6067 Processing chromosome C6067 INFO [2014-07-02 15:00:19,651] [Preprocessor.java:241] [main] Processing chromosome C6107 Processing chromosome C6107 INFO [2014-07-02 15:00:19,722] [Preprocessor.java:241] [main] Processing chromosome C6117 Processing chromosome C6117 INFO [2014-07-02 15:00:19,801] [Preprocessor.java:241] [main] Processing chromosome C6123 Processing chromosome C6123 INFO [2014-07-02 15:00:19,846] [Preprocessor.java:241] [main] Processing chromosome C6157 Processing chromosome C6157 INFO [2014-07-02 15:00:19,931] [Preprocessor.java:241] [main] Processing chromosome C6207 Processing chromosome C6207 INFO [2014-07-02 15:00:19,987] [Preprocessor.java:241] [main] Processing chromosome C6209 Processing chromosome C6209 INFO [2014-07-02 15:00:20,027] [Preprocessor.java:241] [main] Processing chromosome C621 Processing chromosome C621 INFO [2014-07-02 15:00:20,090] [Preprocessor.java:241] [main] Processing chromosome C6227 Processing chromosome C6227 INFO [2014-07-02 15:00:20,192] [Preprocessor.java:241] [main] Processing chromosome C623 Processing chromosome C623 INFO [2014-07-02 15:00:20,256] [Preprocessor.java:241] [main] Processing chromosome C6253 Processing chromosome C6253 INFO [2014-07-02 15:00:20,296] [Preprocessor.java:241] [main] Processing chromosome C6261 Processing chromosome C6261 INFO [2014-07-02 15:00:20,390] [Preprocessor.java:241] [main] Processing chromosome C6265 Processing chromosome C6265 INFO [2014-07-02 15:00:20,484] [Preprocessor.java:241] [main] Processing chromosome C6269 Processing chromosome C6269 INFO [2014-07-02 15:00:20,518] [Preprocessor.java:241] [main] Processing chromosome C6275 Processing chromosome C6275 INFO [2014-07-02 15:00:20,614] [Preprocessor.java:241] [main] Processing chromosome C6277 Processing chromosome C6277 INFO [2014-07-02 15:00:20,678] [Preprocessor.java:241] [main] Processing chromosome C6283 Processing chromosome C6283 INFO [2014-07-02 15:00:20,715] [Preprocessor.java:241] [main] Processing chromosome C6289 Processing chromosome C6289 INFO [2014-07-02 15:00:20,772] [Preprocessor.java:241] [main] Processing chromosome C6337 Processing chromosome C6337 INFO [2014-07-02 15:00:20,868] [Preprocessor.java:241] [main] Processing chromosome C6369 Processing chromosome C6369 INFO [2014-07-02 15:00:20,939] [Preprocessor.java:241] [main] Processing chromosome C6379 Processing chromosome C6379 INFO [2014-07-02 15:00:20,983] [Preprocessor.java:241] [main] Processing chromosome C6387 Processing chromosome C6387 INFO [2014-07-02 15:00:21,023] [Preprocessor.java:241] [main] Processing chromosome C639 Processing chromosome C639 INFO [2014-07-02 15:00:21,137] [Preprocessor.java:241] [main] Processing chromosome C6401 Processing chromosome C6401 INFO [2014-07-02 15:00:21,191] [Preprocessor.java:241] [main] Processing chromosome C6425 Processing chromosome C6425 INFO [2014-07-02 15:00:21,220] [Preprocessor.java:241] [main] Processing chromosome C6441 Processing chromosome C6441 INFO [2014-07-02 15:00:21,287] [Preprocessor.java:241] [main] Processing chromosome C6459 Processing chromosome C6459 INFO [2014-07-02 15:00:21,339] [Preprocessor.java:241] [main] Processing chromosome C647 Processing chromosome C647 INFO [2014-07-02 15:00:21,381] [Preprocessor.java:241] [main] Processing chromosome C6533 Processing chromosome C6533 INFO [2014-07-02 15:00:21,432] [Preprocessor.java:241] [main] Processing chromosome C6599 Processing chromosome C6599 INFO [2014-07-02 15:00:21,490] [Preprocessor.java:241] [main] Processing chromosome C6601 Processing chromosome C6601 INFO [2014-07-02 15:00:21,540] [Preprocessor.java:241] [main] Processing chromosome C6611 Processing chromosome C6611 INFO [2014-07-02 15:00:21,580] [Preprocessor.java:241] [main] Processing chromosome C6625 Processing chromosome C6625 INFO [2014-07-02 15:00:21,625] [Preprocessor.java:241] [main] Processing chromosome C6627 Processing chromosome C6627 INFO [2014-07-02 15:00:21,646] [Preprocessor.java:241] [main] Processing chromosome C6637 Processing chromosome C6637 INFO [2014-07-02 15:00:21,714] [Preprocessor.java:241] [main] Processing chromosome C671 Processing chromosome C671 INFO [2014-07-02 15:00:21,750] [Preprocessor.java:241] [main] Processing chromosome C6727 Processing chromosome C6727 INFO [2014-07-02 15:00:21,822] [Preprocessor.java:241] [main] Processing chromosome C6729 Processing chromosome C6729 INFO [2014-07-02 15:00:21,863] [Preprocessor.java:241] [main] Processing chromosome C6735 Processing chromosome C6735 INFO [2014-07-02 15:00:21,913] [Preprocessor.java:241] [main] Processing chromosome C6787 Processing chromosome C6787 INFO [2014-07-02 15:00:21,952] [Preprocessor.java:241] [main] Processing chromosome C6807 Processing chromosome C6807 INFO [2014-07-02 15:00:21,974] [Preprocessor.java:241] [main] Processing chromosome C6811 Processing chromosome C6811 INFO [2014-07-02 15:00:22,025] [Preprocessor.java:241] [main] Processing chromosome C6823 Processing chromosome C6823 INFO [2014-07-02 15:00:22,087] [Preprocessor.java:241] [main] Processing chromosome C6833 Processing chromosome C6833 INFO [2014-07-02 15:00:22,108] [Preprocessor.java:241] [main] Processing chromosome C6841 Processing chromosome C6841 INFO [2014-07-02 15:00:22,142] [Preprocessor.java:241] [main] Processing chromosome C6845 Processing chromosome C6845 INFO [2014-07-02 15:00:22,177] [Preprocessor.java:241] [main] Processing chromosome C6881 Processing chromosome C6881 INFO [2014-07-02 15:00:22,213] [Preprocessor.java:241] [main] Processing chromosome C6901 Processing chromosome C6901 INFO [2014-07-02 15:00:22,248] [Preprocessor.java:241] [main] Processing chromosome C6925 Processing chromosome C6925 INFO [2014-07-02 15:00:22,285] [Preprocessor.java:241] [main] Processing chromosome C6927 Processing chromosome C6927 INFO [2014-07-02 15:00:22,345] [Preprocessor.java:241] [main] Processing chromosome C693 Processing chromosome C693 INFO [2014-07-02 15:00:22,379] [Preprocessor.java:241] [main] Processing chromosome C6933 Processing chromosome C6933 INFO [2014-07-02 15:00:22,453] [Preprocessor.java:241] [main] Processing chromosome C6969 Processing chromosome C6969 INFO [2014-07-02 15:00:22,500] [Preprocessor.java:241] [main] Processing chromosome C6977 Processing chromosome C6977 INFO [2014-07-02 15:00:22,529] [Preprocessor.java:241] [main] Processing chromosome C6985 Processing chromosome C6985 INFO [2014-07-02 15:00:22,566] [Preprocessor.java:241] [main] Processing chromosome C6989 Processing chromosome C6989 INFO [2014-07-02 15:00:22,625] [Preprocessor.java:241] [main] Processing chromosome C7003 Processing chromosome C7003 INFO [2014-07-02 15:00:22,673] [Preprocessor.java:241] [main] Processing chromosome C7019 Processing chromosome C7019 INFO [2014-07-02 15:00:22,719] [Preprocessor.java:241] [main] Processing chromosome C7083 Processing chromosome C7083 INFO [2014-07-02 15:00:22,772] [Preprocessor.java:241] [main] Processing chromosome C7095 Processing chromosome C7095 INFO [2014-07-02 15:00:22,818] [Preprocessor.java:241] [main] Processing chromosome C7113 Processing chromosome C7113 INFO [2014-07-02 15:00:22,841] [Preprocessor.java:241] [main] Processing chromosome C7115 Processing chromosome C7115 INFO [2014-07-02 15:00:22,878] [Preprocessor.java:241] [main] Processing chromosome C7141 Processing chromosome C7141 INFO [2014-07-02 15:00:22,946] [Preprocessor.java:241] [main] Processing chromosome C7145 Processing chromosome C7145 INFO [2014-07-02 15:00:23,006] [Preprocessor.java:241] [main] Processing chromosome C7147 Processing chromosome C7147 INFO [2014-07-02 15:00:23,062] [Preprocessor.java:241] [main] Processing chromosome C7149 Processing chromosome C7149 INFO [2014-07-02 15:00:23,112] [Preprocessor.java:241] [main] Processing chromosome C7163 Processing chromosome C7163 INFO [2014-07-02 15:00:23,162] [Preprocessor.java:241] [main] Processing chromosome C7245 Processing chromosome C7245 INFO [2014-07-02 15:00:23,199] [Preprocessor.java:241] [main] Processing chromosome C7257 Processing chromosome C7257 INFO [2014-07-02 15:00:23,238] [Preprocessor.java:241] [main] Processing chromosome C7267 Processing chromosome C7267 INFO [2014-07-02 15:00:23,279] [Preprocessor.java:241] [main] Processing chromosome C7277 Processing chromosome C7277 INFO [2014-07-02 15:00:23,350] [Preprocessor.java:241] [main] Processing chromosome C7279 Processing chromosome C7279 INFO [2014-07-02 15:00:23,377] [Preprocessor.java:241] [main] Processing chromosome C7281 Processing chromosome C7281 INFO [2014-07-02 15:00:23,421] [Preprocessor.java:241] [main] Processing chromosome C7283 Processing chromosome C7283 INFO [2014-07-02 15:00:23,461] [Preprocessor.java:241] [main] Processing chromosome C7303 Processing chromosome C7303 INFO [2014-07-02 15:00:23,498] [Preprocessor.java:241] [main] Processing chromosome C7327 Processing chromosome C7327 INFO [2014-07-02 15:00:23,557] [Preprocessor.java:241] [main] Processing chromosome C7333 Processing chromosome C7333 INFO [2014-07-02 15:00:23,596] [Preprocessor.java:241] [main] Processing chromosome C7343 Processing chromosome C7343 INFO [2014-07-02 15:00:23,622] [Preprocessor.java:241] [main] Processing chromosome C7347 Processing chromosome C7347 INFO [2014-07-02 15:00:23,661] [Preprocessor.java:241] [main] Processing chromosome C7355 Processing chromosome C7355 INFO [2014-07-02 15:00:23,699] [Preprocessor.java:241] [main] Processing chromosome C7357 Processing chromosome C7357 INFO [2014-07-02 15:00:23,758] [Preprocessor.java:241] [main] Processing chromosome C7367 Processing chromosome C7367 INFO [2014-07-02 15:00:23,798] [Preprocessor.java:241] [main] Processing chromosome C7453 Processing chromosome C7453 INFO [2014-07-02 15:00:23,865] [Preprocessor.java:241] [main] Processing chromosome C7473 Processing chromosome C7473 INFO [2014-07-02 15:00:23,917] [Preprocessor.java:241] [main] Processing chromosome C7499 Processing chromosome C7499 INFO [2014-07-02 15:00:23,975] [Preprocessor.java:241] [main] Processing chromosome C7531 Processing chromosome C7531 INFO [2014-07-02 15:00:24,001] [Preprocessor.java:241] [main] Processing chromosome C7615 Processing chromosome C7615 INFO [2014-07-02 15:00:24,040] [Preprocessor.java:241] [main] Processing chromosome C7621 Processing chromosome C7621 INFO [2014-07-02 15:00:24,107] [Preprocessor.java:241] [main] Processing chromosome C7661 Processing chromosome C7661 INFO [2014-07-02 15:00:24,136] [Preprocessor.java:241] [main] Processing chromosome C7713 Processing chromosome C7713 INFO [2014-07-02 15:00:24,174] [Preprocessor.java:241] [main] Processing chromosome C7735 Processing chromosome C7735 INFO [2014-07-02 15:00:24,237] [Preprocessor.java:241] [main] Processing chromosome C7779 Processing chromosome C7779 INFO [2014-07-02 15:00:24,260] [Preprocessor.java:241] [main] Processing chromosome C7785 Processing chromosome C7785 INFO [2014-07-02 15:00:24,316] [Preprocessor.java:241] [main] Processing chromosome C7787 Processing chromosome C7787 INFO [2014-07-02 15:00:24,349] [Preprocessor.java:241] [main] Processing chromosome C7791 Processing chromosome C7791 INFO [2014-07-02 15:00:24,415] [Preprocessor.java:241] [main] Processing chromosome C7793 Processing chromosome C7793 INFO [2014-07-02 15:00:24,460] [Preprocessor.java:241] [main] Processing chromosome C7797 Processing chromosome C7797 INFO [2014-07-02 15:00:24,509] [Preprocessor.java:241] [main] Processing chromosome C7803 Processing chromosome C7803 INFO [2014-07-02 15:00:24,547] [Preprocessor.java:241] [main] Processing chromosome C7811 Processing chromosome C7811 INFO [2014-07-02 15:00:24,588] [Preprocessor.java:241] [main] Processing chromosome C7845 Processing chromosome C7845 INFO [2014-07-02 15:00:24,641] [Preprocessor.java:241] [main] Processing chromosome C7849 Processing chromosome C7849 INFO [2014-07-02 15:00:24,663] [Preprocessor.java:241] [main] Processing chromosome C785 Processing chromosome C785 INFO [2014-07-02 15:00:24,738] [Preprocessor.java:241] [main] Processing chromosome C7855 Processing chromosome C7855 INFO [2014-07-02 15:00:24,783] [Preprocessor.java:241] [main] Processing chromosome C7875 Processing chromosome C7875 INFO [2014-07-02 15:00:24,821] [Preprocessor.java:241] [main] Processing chromosome C7891 Processing chromosome C7891 INFO [2014-07-02 15:00:24,868] [Preprocessor.java:241] [main] Processing chromosome C7999 Processing chromosome C7999 INFO [2014-07-02 15:00:24,930] [Preprocessor.java:241] [main] Processing chromosome C8003 Processing chromosome C8003 INFO [2014-07-02 15:00:24,978] [Preprocessor.java:241] [main] Processing chromosome C8005 Processing chromosome C8005 INFO [2014-07-02 15:00:25,037] [Preprocessor.java:241] [main] Processing chromosome C801 Processing chromosome C801 INFO [2014-07-02 15:00:25,075] [Preprocessor.java:241] [main] Processing chromosome C8011 Processing chromosome C8011 INFO [2014-07-02 15:00:25,117] [Preprocessor.java:241] [main] Processing chromosome C8025 Processing chromosome C8025 INFO [2014-07-02 15:00:25,151] [Preprocessor.java:241] [main] Processing chromosome C8029 Processing chromosome C8029 INFO [2014-07-02 15:00:25,186] [Preprocessor.java:241] [main] Processing chromosome C8043 Processing chromosome C8043 INFO [2014-07-02 15:00:25,220] [Preprocessor.java:241] [main] Processing chromosome C807 Processing chromosome C807 INFO [2014-07-02 15:00:25,272] [Preprocessor.java:241] [main] Processing chromosome C8113 Processing chromosome C8113 INFO [2014-07-02 15:00:25,339] [Preprocessor.java:241] [main] Processing chromosome C8125 Processing chromosome C8125 INFO [2014-07-02 15:00:25,360] [Preprocessor.java:241] [main] Processing chromosome C8133 Processing chromosome C8133 INFO [2014-07-02 15:00:25,417] [Preprocessor.java:241] [main] Processing chromosome C8153 Processing chromosome C8153 INFO [2014-07-02 15:00:25,474] [Preprocessor.java:241] [main] Processing chromosome C8167 Processing chromosome C8167 INFO [2014-07-02 15:00:25,498] [Preprocessor.java:241] [main] Processing chromosome C8177 Processing chromosome C8177 INFO [2014-07-02 15:00:25,556] [Preprocessor.java:241] [main] Processing chromosome C8189 Processing chromosome C8189 INFO [2014-07-02 15:00:25,603] [Preprocessor.java:241] [main] Processing chromosome C827 Processing chromosome C827 INFO [2014-07-02 15:00:25,661] [Preprocessor.java:241] [main] Processing chromosome C8281 Processing chromosome C8281 INFO [2014-07-02 15:00:25,714] [Preprocessor.java:241] [main] Processing chromosome C8283 Processing chromosome C8283 INFO [2014-07-02 15:00:25,767] [Preprocessor.java:241] [main] Processing chromosome C8285 Processing chromosome C8285 INFO [2014-07-02 15:00:25,795] [Preprocessor.java:241] [main] Processing chromosome C8293 Processing chromosome C8293 INFO [2014-07-02 15:00:25,860] [Preprocessor.java:241] [main] Processing chromosome C8303 Processing chromosome C8303 INFO [2014-07-02 15:00:25,898] [Preprocessor.java:241] [main] Processing chromosome C8309 Processing chromosome C8309 INFO [2014-07-02 15:00:25,947] [Preprocessor.java:241] [main] Processing chromosome C8315 Processing chromosome C8315 INFO [2014-07-02 15:00:25,996] [Preprocessor.java:241] [main] Processing chromosome C8339 Processing chromosome C8339 INFO [2014-07-02 15:00:26,036] [Preprocessor.java:241] [main] Processing chromosome C8365 Processing chromosome C8365 INFO [2014-07-02 15:00:26,077] [Preprocessor.java:241] [main] Processing chromosome C8377 Processing chromosome C8377 INFO [2014-07-02 15:00:26,122] [Preprocessor.java:241] [main] Processing chromosome C8379 Processing chromosome C8379 INFO [2014-07-02 15:00:26,145] [Preprocessor.java:241] [main] Processing chromosome C8383 Processing chromosome C8383 INFO [2014-07-02 15:00:26,200] [Preprocessor.java:241] [main] Processing chromosome C8465 Processing chromosome C8465 INFO [2014-07-02 15:00:26,251] [Preprocessor.java:241] [main] Processing chromosome C8467 Processing chromosome C8467 INFO [2014-07-02 15:00:26,291] [Preprocessor.java:241] [main] Processing chromosome C8485 Processing chromosome C8485 INFO [2014-07-02 15:00:26,338] [Preprocessor.java:241] [main] Processing chromosome C849 Processing chromosome C849 INFO [2014-07-02 15:00:26,372] [Preprocessor.java:241] [main] Processing chromosome C8503 Processing chromosome C8503 INFO [2014-07-02 15:00:26,432] [Preprocessor.java:241] [main] Processing chromosome C8513 Processing chromosome C8513 INFO [2014-07-02 15:00:26,480] [Preprocessor.java:241] [main] Processing chromosome C8517 Processing chromosome C8517 INFO [2014-07-02 15:00:26,543] [Preprocessor.java:241] [main] Processing chromosome C8519 Processing chromosome C8519 INFO [2014-07-02 15:00:26,591] [Preprocessor.java:241] [main] Processing chromosome C8569 Processing chromosome C8569 INFO [2014-07-02 15:00:26,615] [Preprocessor.java:241] [main] Processing chromosome C8575 Processing chromosome C8575 INFO [2014-07-02 15:00:26,678] [Preprocessor.java:241] [main] Processing chromosome C8585 Processing chromosome C8585 INFO [2014-07-02 15:00:26,731] [Preprocessor.java:241] [main] Processing chromosome C859 Processing chromosome C859 INFO [2014-07-02 15:00:26,770] [Preprocessor.java:241] [main] Processing chromosome C8591 Processing chromosome C8591 INFO [2014-07-02 15:00:26,811] [Preprocessor.java:241] [main] Processing chromosome C8599 Processing chromosome C8599 INFO [2014-07-02 15:00:26,871] [Preprocessor.java:241] [main] Processing chromosome C8605 Processing chromosome C8605 INFO [2014-07-02 15:00:26,915] [Preprocessor.java:241] [main] Processing chromosome C8665 Processing chromosome C8665 INFO [2014-07-02 15:00:26,937] [Preprocessor.java:241] [main] Processing chromosome C8671 Processing chromosome C8671 INFO [2014-07-02 15:00:27,007] [Preprocessor.java:241] [main] Processing chromosome C8695 Processing chromosome C8695 INFO [2014-07-02 15:00:27,029] [Preprocessor.java:241] [main] Processing chromosome C8751 Processing chromosome C8751 INFO [2014-07-02 15:00:27,089] [Preprocessor.java:241] [main] Processing chromosome C8757 Processing chromosome C8757 INFO [2014-07-02 15:00:27,135] [Preprocessor.java:241] [main] Processing chromosome C8767 Processing chromosome C8767 INFO [2014-07-02 15:00:27,162] [Preprocessor.java:241] [main] Processing chromosome C8771 Processing chromosome C8771 INFO [2014-07-02 15:00:27,214] [Preprocessor.java:241] [main] Processing chromosome C8793 Processing chromosome C8793 INFO [2014-07-02 15:00:27,256] [Preprocessor.java:241] [main] Processing chromosome C881 Processing chromosome C881 INFO [2014-07-02 15:00:27,289] [Preprocessor.java:241] [main] Processing chromosome C8843 Processing chromosome C8843 INFO [2014-07-02 15:00:27,353] [Preprocessor.java:241] [main] Processing chromosome C8845 Processing chromosome C8845 INFO [2014-07-02 15:00:27,395] [Preprocessor.java:241] [main] Processing chromosome C8855 Processing chromosome C8855 INFO [2014-07-02 15:00:27,434] [Preprocessor.java:241] [main] Processing chromosome C8857 Processing chromosome C8857 INFO [2014-07-02 15:00:27,454] [Preprocessor.java:241] [main] Processing chromosome C887 Processing chromosome C887 INFO [2014-07-02 15:00:27,554] [Preprocessor.java:241] [main] Processing chromosome C8879 Processing chromosome C8879 INFO [2014-07-02 15:00:27,588] [Preprocessor.java:241] [main] Processing chromosome C8887 Processing chromosome C8887 INFO [2014-07-02 15:00:27,632] [Preprocessor.java:241] [main] Processing chromosome C8891 Processing chromosome C8891 INFO [2014-07-02 15:00:27,684] [Preprocessor.java:241] [main] Processing chromosome C89 Processing chromosome C89 INFO [2014-07-02 15:00:27,747] [Preprocessor.java:241] [main] Processing chromosome C8905 Processing chromosome C8905 INFO [2014-07-02 15:00:27,791] [Preprocessor.java:241] [main] Processing chromosome C8907 Processing chromosome C8907 INFO [2014-07-02 15:00:27,829] [Preprocessor.java:241] [main] Processing chromosome C897 Processing chromosome C897 INFO [2014-07-02 15:00:27,902] [Preprocessor.java:241] [main] Processing chromosome C8987 Processing chromosome C8987 INFO [2014-07-02 15:00:27,966] [Preprocessor.java:241] [main] Processing chromosome C9001 Processing chromosome C9001 INFO [2014-07-02 15:00:28,028] [Preprocessor.java:241] [main] Processing chromosome C9009 Processing chromosome C9009 INFO [2014-07-02 15:00:28,056] [Preprocessor.java:241] [main] Processing chromosome C9013 Processing chromosome C9013 INFO [2014-07-02 15:00:28,132] [Preprocessor.java:241] [main] Processing chromosome C9015 Processing chromosome C9015 INFO [2014-07-02 15:00:28,180] [Preprocessor.java:241] [main] Processing chromosome C9019 Processing chromosome C9019 INFO [2014-07-02 15:00:28,225] [Preprocessor.java:241] [main] Processing chromosome C9023 Processing chromosome C9023 INFO [2014-07-02 15:00:28,274] [Preprocessor.java:241] [main] Processing chromosome C9069 Processing chromosome C9069 INFO [2014-07-02 15:00:28,294] [Preprocessor.java:241] [main] Processing chromosome C909 Processing chromosome C909 INFO [2014-07-02 15:00:28,345] [Preprocessor.java:241] [main] Processing chromosome C91 Processing chromosome C91 INFO [2014-07-02 15:00:28,401] [Preprocessor.java:241] [main] Processing chromosome C913 Processing chromosome C913 INFO [2014-07-02 15:00:28,484] [Preprocessor.java:241] [main] Processing chromosome C9167 Processing chromosome C9167 INFO [2014-07-02 15:00:28,532] [Preprocessor.java:241] [main] Processing chromosome C9183 Processing chromosome C9183 INFO [2014-07-02 15:00:28,575] [Preprocessor.java:241] [main] Processing chromosome C9189 Processing chromosome C9189 INFO [2014-07-02 15:00:28,598] [Preprocessor.java:241] [main] Processing chromosome C9191 Processing chromosome C9191 INFO [2014-07-02 15:00:28,637] [Preprocessor.java:241] [main] Processing chromosome C9213 Processing chromosome C9213 INFO [2014-07-02 15:00:28,710] [Preprocessor.java:241] [main] Processing chromosome C925 Processing chromosome C925 INFO [2014-07-02 15:00:28,748] [Preprocessor.java:241] [main] Processing chromosome C9255 Processing chromosome C9255 INFO [2014-07-02 15:00:28,822] [Preprocessor.java:241] [main] Processing chromosome C927 Processing chromosome C927 INFO [2014-07-02 15:00:28,874] [Preprocessor.java:241] [main] Processing chromosome C9271 Processing chromosome C9271 INFO [2014-07-02 15:00:28,956] [Preprocessor.java:241] [main] Processing chromosome C9273 Processing chromosome C9273 INFO [2014-07-02 15:00:28,998] [Preprocessor.java:241] [main] Processing chromosome C9287 Processing chromosome C9287 INFO [2014-07-02 15:00:29,039] [Preprocessor.java:241] [main] Processing chromosome C9293 Processing chromosome C9293 INFO [2014-07-02 15:00:29,108] [Preprocessor.java:241] [main] Processing chromosome C9297 Processing chromosome C9297 INFO [2014-07-02 15:00:29,163] [Preprocessor.java:241] [main] Processing chromosome C9303 Processing chromosome C9303 INFO [2014-07-02 15:00:29,233] [Preprocessor.java:241] [main] Processing chromosome C9305 Processing chromosome C9305 INFO [2014-07-02 15:00:29,335] [Preprocessor.java:241] [main] Processing chromosome C9311 Processing chromosome C9311 INFO [2014-07-02 15:00:29,371] [Preprocessor.java:241] [main] Processing chromosome C9317 Processing chromosome C9317 INFO [2014-07-02 15:00:29,432] [Preprocessor.java:241] [main] Processing chromosome C9319 Processing chromosome C9319 INFO [2014-07-02 15:00:29,473] [Preprocessor.java:241] [main] Processing chromosome C937 Processing chromosome C937 INFO [2014-07-02 15:00:29,534] [Preprocessor.java:241] [main] Processing chromosome C9373 Processing chromosome C9373 INFO [2014-07-02 15:00:29,555] [Preprocessor.java:241] [main] Processing chromosome C9375 Processing chromosome C9375 INFO [2014-07-02 15:00:29,606] [Preprocessor.java:241] [main] Processing chromosome C9381 Processing chromosome C9381 INFO [2014-07-02 15:00:29,644] [Preprocessor.java:241] [main] Processing chromosome C9383 Processing chromosome C9383 INFO [2014-07-02 15:00:29,666] [Preprocessor.java:241] [main] Processing chromosome C9401 Processing chromosome C9401 INFO [2014-07-02 15:00:29,721] [Preprocessor.java:241] [main] Processing chromosome C9417 Processing chromosome C9417 INFO [2014-07-02 15:00:29,769] [Preprocessor.java:241] [main] Processing chromosome C9437 Processing chromosome C9437 INFO [2014-07-02 15:00:29,793] [Preprocessor.java:241] [main] Processing chromosome C947 Processing chromosome C947 INFO [2014-07-02 15:00:29,874] [Preprocessor.java:241] [main] Processing chromosome C9481 Processing chromosome C9481 INFO [2014-07-02 15:00:29,985] [Preprocessor.java:241] [main] Processing chromosome C9483 Processing chromosome C9483 INFO [2014-07-02 15:00:30,044] [Preprocessor.java:241] [main] Processing chromosome C9485 Processing chromosome C9485 INFO [2014-07-02 15:00:30,105] [Preprocessor.java:241] [main] Processing chromosome C9491 Processing chromosome C9491 INFO [2014-07-02 15:00:30,129] [Preprocessor.java:241] [main] Processing chromosome C9497 Processing chromosome C9497 INFO [2014-07-02 15:00:30,204] [Preprocessor.java:241] [main] Processing chromosome C95 Processing chromosome C95 INFO [2014-07-02 15:00:30,251] [Preprocessor.java:241] [main] Processing chromosome C9509 Processing chromosome C9509 INFO [2014-07-02 15:00:30,368] [Preprocessor.java:241] [main] Processing chromosome C9515 Processing chromosome C9515 INFO [2014-07-02 15:00:30,436] [Preprocessor.java:241] [main] Processing chromosome C9521 Processing chromosome C9521 INFO [2014-07-02 15:00:30,473] [Preprocessor.java:241] [main] Processing chromosome C9565 Processing chromosome C9565 INFO [2014-07-02 15:00:30,512] [Preprocessor.java:241] [main] Processing chromosome C9569 Processing chromosome C9569 INFO [2014-07-02 15:00:30,556] [Preprocessor.java:241] [main] Processing chromosome C9575 Processing chromosome C9575 INFO [2014-07-02 15:00:30,610] [Preprocessor.java:241] [main] Processing chromosome C9585 Processing chromosome C9585 INFO [2014-07-02 15:00:30,645] [Preprocessor.java:241] [main] Processing chromosome C9609 Processing chromosome C9609 INFO [2014-07-02 15:00:30,719] [Preprocessor.java:241] [main] Processing chromosome C9651 Processing chromosome C9651 INFO [2014-07-02 15:00:30,763] [Preprocessor.java:241] [main] Processing chromosome C9653 Processing chromosome C9653 INFO [2014-07-02 15:00:30,812] [Preprocessor.java:241] [main] Processing chromosome C9663 Processing chromosome C9663 INFO [2014-07-02 15:00:30,865] [Preprocessor.java:241] [main] Processing chromosome C9667 Processing chromosome C9667 INFO [2014-07-02 15:00:30,904] [Preprocessor.java:241] [main] Processing chromosome C9671 Processing chromosome C9671 INFO [2014-07-02 15:00:30,963] [Preprocessor.java:241] [main] Processing chromosome C9691 Processing chromosome C9691 INFO [2014-07-02 15:00:31,018] [Preprocessor.java:241] [main] Processing chromosome C9695 Processing chromosome C9695 INFO [2014-07-02 15:00:31,070] [Preprocessor.java:241] [main] Processing chromosome C9751 Processing chromosome C9751 INFO [2014-07-02 15:00:31,135] [Preprocessor.java:241] [main] Processing chromosome C9757 Processing chromosome C9757 INFO [2014-07-02 15:00:31,204] [Preprocessor.java:241] [main] Processing chromosome C9761 Processing chromosome C9761 INFO [2014-07-02 15:00:31,268] [Preprocessor.java:241] [main] Processing chromosome C9793 Processing chromosome C9793 INFO [2014-07-02 15:00:31,321] [Preprocessor.java:241] [main] Processing chromosome C9795 Processing chromosome C9795 INFO [2014-07-02 15:00:31,357] [Preprocessor.java:241] [main] Processing chromosome C9803 Processing chromosome C9803 INFO [2014-07-02 15:00:31,426] [Preprocessor.java:241] [main] Processing chromosome C9815 Processing chromosome C9815 INFO [2014-07-02 15:00:31,500] [Preprocessor.java:241] [main] Processing chromosome C9817 Processing chromosome C9817 INFO [2014-07-02 15:00:31,533] [Preprocessor.java:241] [main] Processing chromosome C9823 Processing chromosome C9823 INFO [2014-07-02 15:00:31,612] [Preprocessor.java:241] [main] Processing chromosome C983 Processing chromosome C983 INFO [2014-07-02 15:00:31,654] [Preprocessor.java:241] [main] Processing chromosome C9879 Processing chromosome C9879 INFO [2014-07-02 15:00:31,794] [Preprocessor.java:241] [main] Processing chromosome C9915 Processing chromosome C9915 INFO [2014-07-02 15:00:31,848] [Preprocessor.java:241] [main] Processing chromosome C9917 Processing chromosome C9917 INFO [2014-07-02 15:00:31,911] [Preprocessor.java:241] [main] Processing chromosome C9947 Processing chromosome C9947 INFO [2014-07-02 15:00:31,989] [Preprocessor.java:241] [main] Processing chromosome C9949 Processing chromosome C9949 INFO [2014-07-02 15:00:32,017] [Preprocessor.java:241] [main] Processing chromosome C9951 Processing chromosome C9951 INFO [2014-07-02 15:00:32,095] [Preprocessor.java:241] [main] Processing chromosome C9963 Processing chromosome C9963 INFO [2014-07-02 15:00:32,192] [Preprocessor.java:241] [main] Processing chromosome C9969 Processing chromosome C9969 INFO [2014-07-02 15:00:32,215] [Preprocessor.java:241] [main] Processing chromosome C9971 Processing chromosome C9971 INFO [2014-07-02 15:00:32,254] [Preprocessor.java:241] [main] Processing chromosome C9975 Processing chromosome C9975 INFO [2014-07-02 15:00:32,295] [Preprocessor.java:241] [main] Processing chromosome scaffold1 Processing chromosome scaffold1 INFO [2014-07-02 15:00:32,355] [Preprocessor.java:241] [main] Processing chromosome scaffold10 Processing chromosome scaffold10 INFO [2014-07-02 15:00:37,922] [Preprocessor.java:241] [main] Processing chromosome scaffold100 Processing chromosome scaffold100 INFO [2014-07-02 15:00:38,156] [Preprocessor.java:241] [main] Processing chromosome scaffold1000 Processing chromosome scaffold1000 .INFO [2014-07-02 15:00:38,234] [Preprocessor.java:241] [main] Processing chromosome scaffold1001 Processing chromosome scaffold1001 INFO [2014-07-02 15:00:38,284] [Preprocessor.java:241] [main] Processing chromosome scaffold1002 Processing chromosome scaffold1002 INFO [2014-07-02 15:00:38,310] [Preprocessor.java:241] [main] Processing chromosome scaffold1004 Processing chromosome scaffold1004 INFO [2014-07-02 15:00:38,396] [Preprocessor.java:241] [main] Processing chromosome scaffold1005 Processing chromosome scaffold1005 INFO [2014-07-02 15:00:38,414] [Preprocessor.java:241] [main] Processing chromosome scaffold1006 Processing chromosome scaffold1006 INFO [2014-07-02 15:00:38,421] [Preprocessor.java:241] [main] Processing chromosome scaffold1008 Processing chromosome scaffold1008 INFO [2014-07-02 15:00:38,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1009 Processing chromosome scaffold1009 INFO [2014-07-02 15:00:42,863] [Preprocessor.java:241] [main] Processing chromosome scaffold101 Processing chromosome scaffold101 INFO [2014-07-02 15:00:42,976] [Preprocessor.java:241] [main] Processing chromosome scaffold1010 Processing chromosome scaffold1010 INFO [2014-07-02 15:00:43,006] [Preprocessor.java:241] [main] Processing chromosome scaffold1011 Processing chromosome scaffold1011 INFO [2014-07-02 15:00:43,018] [Preprocessor.java:241] [main] Processing chromosome scaffold1014 Processing chromosome scaffold1014 INFO [2014-07-02 15:00:43,108] [Preprocessor.java:241] [main] Processing chromosome scaffold1015 Processing chromosome scaffold1015 INFO [2014-07-02 15:00:43,115] [Preprocessor.java:241] [main] Processing chromosome scaffold1016 Processing chromosome scaffold1016 INFO [2014-07-02 15:00:43,170] [Preprocessor.java:241] [main] Processing chromosome scaffold1017 Processing chromosome scaffold1017 INFO [2014-07-02 15:00:43,421] [Preprocessor.java:241] [main] Processing chromosome scaffold1018 Processing chromosome scaffold1018 INFO [2014-07-02 15:00:48,651] [Preprocessor.java:241] [main] Processing chromosome scaffold102 Processing chromosome scaffold102 INFO [2014-07-02 15:00:51,993] [Preprocessor.java:241] [main] Processing chromosome scaffold1020 Processing chromosome scaffold1020 INFO [2014-07-02 15:00:52,022] [Preprocessor.java:241] [main] Processing chromosome scaffold1021 Processing chromosome scaffold1021 INFO [2014-07-02 15:00:52,129] [Preprocessor.java:241] [main] Processing chromosome scaffold1022 Processing chromosome scaffold1022 INFO [2014-07-02 15:00:52,141] [Preprocessor.java:241] [main] Processing chromosome scaffold1024 Processing chromosome scaffold1024 INFO [2014-07-02 15:00:57,909] [Preprocessor.java:241] [main] Processing chromosome scaffold1026 Processing chromosome scaffold1026 INFO [2014-07-02 15:00:57,931] [Preprocessor.java:241] [main] Processing chromosome scaffold1027 Processing chromosome scaffold1027 INFO [2014-07-02 15:00:57,989] [Preprocessor.java:241] [main] Processing chromosome scaffold1028 Processing chromosome scaffold1028 INFO [2014-07-02 15:00:58,062] [Preprocessor.java:241] [main] Processing chromosome scaffold1029 Processing chromosome scaffold1029 INFO [2014-07-02 15:00:58,071] [Preprocessor.java:241] [main] Processing chromosome scaffold103 Processing chromosome scaffold103 INFO [2014-07-02 15:00:58,089] [Preprocessor.java:241] [main] Processing chromosome scaffold1030 Processing chromosome scaffold1030 INFO [2014-07-02 15:00:58,102] [Preprocessor.java:241] [main] Processing chromosome scaffold1031 Processing chromosome scaffold1031 INFO [2014-07-02 15:00:58,221] [Preprocessor.java:241] [main] Processing chromosome scaffold1032 Processing chromosome scaffold1032 .INFO [2014-07-02 15:00:58,398] [Preprocessor.java:241] [main] Processing chromosome scaffold1033 Processing chromosome scaffold1033 INFO [2014-07-02 15:00:58,427] [Preprocessor.java:241] [main] Processing chromosome scaffold1034 Processing chromosome scaffold1034 INFO [2014-07-02 15:00:58,441] [Preprocessor.java:241] [main] Processing chromosome scaffold1035 Processing chromosome scaffold1035 INFO [2014-07-02 15:00:58,479] [Preprocessor.java:241] [main] Processing chromosome scaffold1036 Processing chromosome scaffold1036 INFO [2014-07-02 15:00:58,552] [Preprocessor.java:241] [main] Processing chromosome scaffold1037 Processing chromosome scaffold1037 INFO [2014-07-02 15:00:58,664] [Preprocessor.java:241] [main] Processing chromosome scaffold1038 Processing chromosome scaffold1038 INFO [2014-07-02 15:00:58,704] [Preprocessor.java:241] [main] Processing chromosome scaffold1039 Processing chromosome scaffold1039 INFO [2014-07-02 15:00:58,716] [Preprocessor.java:241] [main] Processing chromosome scaffold104 Processing chromosome scaffold104 INFO [2014-07-02 15:00:58,720] [Preprocessor.java:241] [main] Processing chromosome scaffold1041 Processing chromosome scaffold1041 INFO [2014-07-02 15:00:58,775] [Preprocessor.java:241] [main] Processing chromosome scaffold1042 Processing chromosome scaffold1042 INFO [2014-07-02 15:00:58,795] [Preprocessor.java:241] [main] Processing chromosome scaffold1043 Processing chromosome scaffold1043 INFO [2014-07-02 15:00:58,801] [Preprocessor.java:241] [main] Processing chromosome scaffold1044 Processing chromosome scaffold1044 INFO [2014-07-02 15:00:58,835] [Preprocessor.java:241] [main] Processing chromosome scaffold1045 Processing chromosome scaffold1045 INFO [2014-07-02 15:00:58,856] [Preprocessor.java:241] [main] Processing chromosome scaffold1047 Processing chromosome scaffold1047 INFO [2014-07-02 15:00:58,887] [Preprocessor.java:241] [main] Processing chromosome scaffold1048 Processing chromosome scaffold1048 INFO [2014-07-02 15:00:58,890] [Preprocessor.java:241] [main] Processing chromosome scaffold105 Processing chromosome scaffold105 INFO [2014-07-02 15:01:03,982] [Preprocessor.java:241] [main] Processing chromosome scaffold1050 Processing chromosome scaffold1050 INFO [2014-07-02 15:01:04,041] [Preprocessor.java:241] [main] Processing chromosome scaffold1051 Processing chromosome scaffold1051 INFO [2014-07-02 15:01:04,090] [Preprocessor.java:241] [main] Processing chromosome scaffold1052 Processing chromosome scaffold1052 INFO [2014-07-02 15:01:04,146] [Preprocessor.java:241] [main] Processing chromosome scaffold1053 Processing chromosome scaffold1053 INFO [2014-07-02 15:01:04,193] [Preprocessor.java:241] [main] Processing chromosome scaffold1054 Processing chromosome scaffold1054 INFO [2014-07-02 15:01:04,259] [Preprocessor.java:241] [main] Processing chromosome scaffold1055 Processing chromosome scaffold1055 INFO [2014-07-02 15:01:04,270] [Preprocessor.java:241] [main] Processing chromosome scaffold1056 Processing chromosome scaffold1056 INFO [2014-07-02 15:01:04,359] [Preprocessor.java:241] [main] Processing chromosome scaffold1057 Processing chromosome scaffold1057 INFO [2014-07-02 15:01:04,366] [Preprocessor.java:241] [main] Processing chromosome scaffold1058 Processing chromosome scaffold1058 INFO [2014-07-02 15:01:04,386] [Preprocessor.java:241] [main] Processing chromosome scaffold106 Processing chromosome scaffold106 INFO [2014-07-02 15:01:04,497] [Preprocessor.java:241] [main] Processing chromosome scaffold1060 Processing chromosome scaffold1060 INFO [2014-07-02 15:01:04,526] [Preprocessor.java:241] [main] Processing chromosome scaffold1061 Processing chromosome scaffold1061 INFO [2014-07-02 15:01:04,609] [Preprocessor.java:241] [main] Processing chromosome scaffold1062 Processing chromosome scaffold1062 INFO [2014-07-02 15:01:04,628] [Preprocessor.java:241] [main] Processing chromosome scaffold1064 Processing chromosome scaffold1064 INFO [2014-07-02 15:01:04,679] [Preprocessor.java:241] [main] Processing chromosome scaffold1066 Processing chromosome scaffold1066 INFO [2014-07-02 15:01:04,716] [Preprocessor.java:241] [main] Processing chromosome scaffold1067 Processing chromosome scaffold1067 INFO [2014-07-02 15:01:04,740] [Preprocessor.java:241] [main] Processing chromosome scaffold1068 Processing chromosome scaffold1068 INFO [2014-07-02 15:01:04,742] [Preprocessor.java:241] [main] Processing chromosome scaffold1069 Processing chromosome scaffold1069 INFO [2014-07-02 15:01:04,749] [Preprocessor.java:241] [main] Processing chromosome scaffold107 Processing chromosome scaffold107 INFO [2014-07-02 15:01:04,843] [Preprocessor.java:241] [main] Processing chromosome scaffold1070 Processing chromosome scaffold1070 INFO [2014-07-02 15:01:04,921] [Preprocessor.java:241] [main] Processing chromosome scaffold1072 Processing chromosome scaffold1072 INFO [2014-07-02 15:01:04,927] [Preprocessor.java:241] [main] Processing chromosome scaffold1073 Processing chromosome scaffold1073 INFO [2014-07-02 15:01:04,985] [Preprocessor.java:241] [main] Processing chromosome scaffold1074 Processing chromosome scaffold1074 INFO [2014-07-02 15:01:04,994] [Preprocessor.java:241] [main] Processing chromosome scaffold1075 Processing chromosome scaffold1075 INFO [2014-07-02 15:01:05,014] [Preprocessor.java:241] [main] Processing chromosome scaffold1077 Processing chromosome scaffold1077 INFO [2014-07-02 15:01:14,278] [Preprocessor.java:241] [main] Processing chromosome scaffold1078 Processing chromosome scaffold1078 INFO [2014-07-02 15:01:14,305] [Preprocessor.java:241] [main] Processing chromosome scaffold1080 Processing chromosome scaffold1080 INFO [2014-07-02 15:01:14,357] [Preprocessor.java:241] [main] Processing chromosome scaffold1081 Processing chromosome scaffold1081 INFO [2014-07-02 15:01:14,389] [Preprocessor.java:241] [main] Processing chromosome scaffold1082 Processing chromosome scaffold1082 INFO [2014-07-02 15:01:14,406] [Preprocessor.java:241] [main] Processing chromosome scaffold1083 Processing chromosome scaffold1083 INFO [2014-07-02 15:01:14,517] [Preprocessor.java:241] [main] Processing chromosome scaffold1084 Processing chromosome scaffold1084 INFO [2014-07-02 15:01:14,572] [Preprocessor.java:241] [main] Processing chromosome scaffold1085 Processing chromosome scaffold1085 INFO [2014-07-02 15:01:14,591] [Preprocessor.java:241] [main] Processing chromosome scaffold1086 Processing chromosome scaffold1086 INFO [2014-07-02 15:01:14,733] [Preprocessor.java:241] [main] Processing chromosome scaffold1087 Processing chromosome scaffold1087 INFO [2014-07-02 15:01:14,755] [Preprocessor.java:241] [main] Processing chromosome scaffold1088 Processing chromosome scaffold1088 INFO [2014-07-02 15:01:14,797] [Preprocessor.java:241] [main] Processing chromosome scaffold1089 Processing chromosome scaffold1089 INFO [2014-07-02 15:01:14,808] [Preprocessor.java:241] [main] Processing chromosome scaffold109 Processing chromosome scaffold109 INFO [2014-07-02 15:01:14,886] [Preprocessor.java:241] [main] Processing chromosome scaffold1090 Processing chromosome scaffold1090 INFO [2014-07-02 15:01:14,912] [Preprocessor.java:241] [main] Processing chromosome scaffold1091 Processing chromosome scaffold1091 INFO [2014-07-02 15:01:14,926] [Preprocessor.java:241] [main] Processing chromosome scaffold1092 Processing chromosome scaffold1092 INFO [2014-07-02 15:01:14,937] [Preprocessor.java:241] [main] Processing chromosome scaffold1093 Processing chromosome scaffold1093 INFO [2014-07-02 15:01:15,028] [Preprocessor.java:241] [main] Processing chromosome scaffold1094 Processing chromosome scaffold1094 INFO [2014-07-02 15:01:31,983] [Preprocessor.java:241] [main] Processing chromosome scaffold1095 Processing chromosome scaffold1095 INFO [2014-07-02 15:01:31,989] [Preprocessor.java:241] [main] Processing chromosome scaffold1096 Processing chromosome scaffold1096 INFO [2014-07-02 15:01:32,014] [Preprocessor.java:241] [main] Processing chromosome scaffold1097 Processing chromosome scaffold1097 INFO [2014-07-02 15:01:32,127] [Preprocessor.java:241] [main] Processing chromosome scaffold1098 Processing chromosome scaffold1098 INFO [2014-07-02 15:01:32,166] [Preprocessor.java:241] [main] Processing chromosome scaffold1099 Processing chromosome scaffold1099 INFO [2014-07-02 15:01:32,171] [Preprocessor.java:241] [main] Processing chromosome scaffold11 Processing chromosome scaffold11 INFO [2014-07-02 15:01:32,238] [Preprocessor.java:241] [main] Processing chromosome scaffold110 Processing chromosome scaffold110 INFO [2014-07-02 15:01:32,308] [Preprocessor.java:241] [main] Processing chromosome scaffold1100 Processing chromosome scaffold1100 INFO [2014-07-02 15:01:32,378] [Preprocessor.java:241] [main] Processing chromosome scaffold1101 Processing chromosome scaffold1101 .INFO [2014-07-02 15:01:32,449] [Preprocessor.java:241] [main] Processing chromosome scaffold1102 Processing chromosome scaffold1102 INFO [2014-07-02 15:01:32,522] [Preprocessor.java:241] [main] Processing chromosome scaffold1103 Processing chromosome scaffold1103 INFO [2014-07-02 15:01:32,575] [Preprocessor.java:241] [main] Processing chromosome scaffold1104 Processing chromosome scaffold1104 INFO [2014-07-02 15:01:32,743] [Preprocessor.java:241] [main] Processing chromosome scaffold1105 Processing chromosome scaffold1105 INFO [2014-07-02 15:01:32,764] [Preprocessor.java:241] [main] Processing chromosome scaffold1106 Processing chromosome scaffold1106 INFO [2014-07-02 15:01:32,778] [Preprocessor.java:241] [main] Processing chromosome scaffold1107 Processing chromosome scaffold1107 INFO [2014-07-02 15:01:32,850] [Preprocessor.java:241] [main] Processing chromosome scaffold1108 Processing chromosome scaffold1108 INFO [2014-07-02 15:01:45,989] [Preprocessor.java:241] [main] Processing chromosome scaffold1110 Processing chromosome scaffold1110 INFO [2014-07-02 15:01:46,000] [Preprocessor.java:241] [main] Processing chromosome scaffold1111 Processing chromosome scaffold1111 INFO [2014-07-02 15:01:46,031] [Preprocessor.java:241] [main] Processing chromosome scaffold1112 Processing chromosome scaffold1112 INFO [2014-07-02 15:01:46,065] [Preprocessor.java:241] [main] Processing chromosome scaffold1113 Processing chromosome scaffold1113 INFO [2014-07-02 15:01:46,115] [Preprocessor.java:241] [main] Processing chromosome scaffold1114 Processing chromosome scaffold1114 INFO [2014-07-02 15:01:46,128] [Preprocessor.java:241] [main] Processing chromosome scaffold1115 Processing chromosome scaffold1115 INFO [2014-07-02 15:01:46,154] [Preprocessor.java:241] [main] Processing chromosome scaffold1116 Processing chromosome scaffold1116 INFO [2014-07-02 15:01:46,218] [Preprocessor.java:241] [main] Processing chromosome scaffold1117 Processing chromosome scaffold1117 INFO [2014-07-02 15:01:46,243] [Preprocessor.java:241] [main] Processing chromosome scaffold1118 Processing chromosome scaffold1118 INFO [2014-07-02 15:01:46,245] [Preprocessor.java:241] [main] Processing chromosome scaffold1119 Processing chromosome scaffold1119 INFO [2014-07-02 15:01:46,276] [Preprocessor.java:241] [main] Processing chromosome scaffold1121 Processing chromosome scaffold1121 INFO [2014-07-02 15:01:46,342] [Preprocessor.java:241] [main] Processing chromosome scaffold1122 Processing chromosome scaffold1122 INFO [2014-07-02 15:01:46,357] [Preprocessor.java:241] [main] Processing chromosome scaffold1123 Processing chromosome scaffold1123 INFO [2014-07-02 15:01:46,401] [Preprocessor.java:241] [main] Processing chromosome scaffold1124 Processing chromosome scaffold1124 INFO [2014-07-02 15:01:46,440] [Preprocessor.java:241] [main] Processing chromosome scaffold1125 Processing chromosome scaffold1125 INFO [2014-07-02 15:01:46,528] [Preprocessor.java:241] [main] Processing chromosome scaffold1127 Processing chromosome scaffold1127 INFO [2014-07-02 15:01:46,609] [Preprocessor.java:241] [main] Processing chromosome scaffold1128 Processing chromosome scaffold1128 INFO [2014-07-02 15:01:46,648] [Preprocessor.java:241] [main] Processing chromosome scaffold1129 Processing chromosome scaffold1129 INFO [2014-07-02 15:01:46,669] [Preprocessor.java:241] [main] Processing chromosome scaffold113 Processing chromosome scaffold113 INFO [2014-07-02 15:01:46,720] [Preprocessor.java:241] [main] Processing chromosome scaffold1131 Processing chromosome scaffold1131 INFO [2014-07-02 15:01:46,764] [Preprocessor.java:241] [main] Processing chromosome scaffold1132 Processing chromosome scaffold1132 INFO [2014-07-02 15:01:46,878] [Preprocessor.java:241] [main] Processing chromosome scaffold1133 Processing chromosome scaffold1133 INFO [2014-07-02 15:01:46,887] [Preprocessor.java:241] [main] Processing chromosome scaffold1134 Processing chromosome scaffold1134 INFO [2014-07-02 15:01:46,909] [Preprocessor.java:241] [main] Processing chromosome scaffold1135 Processing chromosome scaffold1135 INFO [2014-07-02 15:01:46,912] [Preprocessor.java:241] [main] Processing chromosome scaffold1136 Processing chromosome scaffold1136 INFO [2014-07-02 15:01:46,941] [Preprocessor.java:241] [main] Processing chromosome scaffold1137 Processing chromosome scaffold1137 INFO [2014-07-02 15:01:46,960] [Preprocessor.java:241] [main] Processing chromosome scaffold1138 Processing chromosome scaffold1138 INFO [2014-07-02 15:01:47,028] [Preprocessor.java:241] [main] Processing chromosome scaffold1139 Processing chromosome scaffold1139 INFO [2014-07-02 15:01:47,052] [Preprocessor.java:241] [main] Processing chromosome scaffold114 Processing chromosome scaffold114 INFO [2014-07-02 15:01:47,066] [Preprocessor.java:241] [main] Processing chromosome scaffold1140 Processing chromosome scaffold1140 INFO [2014-07-02 15:01:47,081] [Preprocessor.java:241] [main] Processing chromosome scaffold1141 Processing chromosome scaffold1141 INFO [2014-07-02 15:01:47,101] [Preprocessor.java:241] [main] Processing chromosome scaffold1142 Processing chromosome scaffold1142 INFO [2014-07-02 15:01:47,134] [Preprocessor.java:241] [main] Processing chromosome scaffold1143 Processing chromosome scaffold1143 INFO [2014-07-02 15:01:59,315] [Preprocessor.java:241] [main] Processing chromosome scaffold1144 Processing chromosome scaffold1144 INFO [2014-07-02 15:01:59,386] [Preprocessor.java:241] [main] Processing chromosome scaffold1147 Processing chromosome scaffold1147 INFO [2014-07-02 15:01:59,474] [Preprocessor.java:241] [main] Processing chromosome scaffold1148 Processing chromosome scaffold1148 INFO [2014-07-02 15:01:59,514] [Preprocessor.java:241] [main] Processing chromosome scaffold1149 Processing chromosome scaffold1149 INFO [2014-07-02 15:01:59,575] [Preprocessor.java:241] [main] Processing chromosome scaffold115 Processing chromosome scaffold115 INFO [2014-07-02 15:01:59,661] [Preprocessor.java:241] [main] Processing chromosome scaffold1150 Processing chromosome scaffold1150 INFO [2014-07-02 15:01:59,679] [Preprocessor.java:241] [main] Processing chromosome scaffold1152 Processing chromosome scaffold1152 INFO [2014-07-02 15:01:59,867] [Preprocessor.java:241] [main] Processing chromosome scaffold1154 Processing chromosome scaffold1154 INFO [2014-07-02 15:02:00,090] [Preprocessor.java:241] [main] Processing chromosome scaffold1155 Processing chromosome scaffold1155 INFO [2014-07-02 15:02:00,137] [Preprocessor.java:241] [main] Processing chromosome scaffold1156 Processing chromosome scaffold1156 INFO [2014-07-02 15:02:00,160] [Preprocessor.java:241] [main] Processing chromosome scaffold1157 Processing chromosome scaffold1157 INFO [2014-07-02 15:02:00,208] [Preprocessor.java:241] [main] Processing chromosome scaffold1159 Processing chromosome scaffold1159 INFO [2014-07-02 15:02:00,253] [Preprocessor.java:241] [main] Processing chromosome scaffold116 Processing chromosome scaffold116 INFO [2014-07-02 15:02:00,294] [Preprocessor.java:241] [main] Processing chromosome scaffold1160 Processing chromosome scaffold1160 INFO [2014-07-02 15:02:15,247] [Preprocessor.java:241] [main] Processing chromosome scaffold1161 Processing chromosome scaffold1161 INFO [2014-07-02 15:02:15,275] [Preprocessor.java:241] [main] Processing chromosome scaffold1163 Processing chromosome scaffold1163 INFO [2014-07-02 15:02:15,332] [Preprocessor.java:241] [main] Processing chromosome scaffold1164 Processing chromosome scaffold1164 INFO [2014-07-02 15:02:15,409] [Preprocessor.java:241] [main] Processing chromosome scaffold1166 Processing chromosome scaffold1166 INFO [2014-07-02 15:02:15,438] [Preprocessor.java:241] [main] Processing chromosome scaffold1168 Processing chromosome scaffold1168 INFO [2014-07-02 15:02:15,458] [Preprocessor.java:241] [main] Processing chromosome scaffold1169 Processing chromosome scaffold1169 INFO [2014-07-02 15:02:15,467] [Preprocessor.java:241] [main] Processing chromosome scaffold117 Processing chromosome scaffold117 INFO [2014-07-02 15:02:15,563] [Preprocessor.java:241] [main] Processing chromosome scaffold1171 Processing chromosome scaffold1171 INFO [2014-07-02 15:02:15,610] [Preprocessor.java:241] [main] Processing chromosome scaffold1172 Processing chromosome scaffold1172 INFO [2014-07-02 15:02:15,657] [Preprocessor.java:241] [main] Processing chromosome scaffold1173 Processing chromosome scaffold1173 INFO [2014-07-02 15:02:15,696] [Preprocessor.java:241] [main] Processing chromosome scaffold1174 Processing chromosome scaffold1174 .INFO [2014-07-02 15:02:15,913] [Preprocessor.java:241] [main] Processing chromosome scaffold1177 Processing chromosome scaffold1177 INFO [2014-07-02 15:02:15,954] [Preprocessor.java:241] [main] Processing chromosome scaffold1178 Processing chromosome scaffold1178 INFO [2014-07-02 15:02:15,959] [Preprocessor.java:241] [main] Processing chromosome scaffold1179 Processing chromosome scaffold1179 INFO [2014-07-02 15:02:16,184] [Preprocessor.java:241] [main] Processing chromosome scaffold118 Processing chromosome scaffold118 INFO [2014-07-02 15:02:16,222] [Preprocessor.java:241] [main] Processing chromosome scaffold1180 Processing chromosome scaffold1180 INFO [2014-07-02 15:02:16,286] [Preprocessor.java:241] [main] Processing chromosome scaffold1181 Processing chromosome scaffold1181 INFO [2014-07-02 15:02:16,315] [Preprocessor.java:241] [main] Processing chromosome scaffold1182 Processing chromosome scaffold1182 INFO [2014-07-02 15:02:16,333] [Preprocessor.java:241] [main] Processing chromosome scaffold1183 Processing chromosome scaffold1183 INFO [2014-07-02 15:02:16,363] [Preprocessor.java:241] [main] Processing chromosome scaffold1184 Processing chromosome scaffold1184 INFO [2014-07-02 15:02:16,387] [Preprocessor.java:241] [main] Processing chromosome scaffold1185 Processing chromosome scaffold1185 INFO [2014-07-02 15:02:16,455] [Preprocessor.java:241] [main] Processing chromosome scaffold1186 Processing chromosome scaffold1186 INFO [2014-07-02 15:02:16,488] [Preprocessor.java:241] [main] Processing chromosome scaffold1187 Processing chromosome scaffold1187 INFO [2014-07-02 15:02:26,663] [Preprocessor.java:241] [main] Processing chromosome scaffold1188 Processing chromosome scaffold1188 INFO [2014-07-02 15:02:26,774] [Preprocessor.java:241] [main] Processing chromosome scaffold1189 Processing chromosome scaffold1189 INFO [2014-07-02 15:02:26,925] [Preprocessor.java:241] [main] Processing chromosome scaffold119 Processing chromosome scaffold119 INFO [2014-07-02 15:02:26,970] [Preprocessor.java:241] [main] Processing chromosome scaffold1190 Processing chromosome scaffold1190 INFO [2014-07-02 15:02:26,977] [Preprocessor.java:241] [main] Processing chromosome scaffold1191 Processing chromosome scaffold1191 INFO [2014-07-02 15:02:27,014] [Preprocessor.java:241] [main] Processing chromosome scaffold1194 Processing chromosome scaffold1194 INFO [2014-07-02 15:02:27,029] [Preprocessor.java:241] [main] Processing chromosome scaffold1195 Processing chromosome scaffold1195 INFO [2014-07-02 15:02:27,089] [Preprocessor.java:241] [main] Processing chromosome scaffold1196 Processing chromosome scaffold1196 INFO [2014-07-02 15:02:27,122] [Preprocessor.java:241] [main] Processing chromosome scaffold1197 Processing chromosome scaffold1197 INFO [2014-07-02 15:02:27,127] [Preprocessor.java:241] [main] Processing chromosome scaffold1198 Processing chromosome scaffold1198 INFO [2014-07-02 15:02:27,133] [Preprocessor.java:241] [main] Processing chromosome scaffold1199 Processing chromosome scaffold1199 INFO [2014-07-02 15:02:27,160] [Preprocessor.java:241] [main] Processing chromosome scaffold12 Processing chromosome scaffold12 INFO [2014-07-02 15:02:27,309] [Preprocessor.java:241] [main] Processing chromosome scaffold120 Processing chromosome scaffold120 INFO [2014-07-02 15:02:32,346] [Preprocessor.java:241] [main] Processing chromosome scaffold1200 Processing chromosome scaffold1200 INFO [2014-07-02 15:02:32,373] [Preprocessor.java:241] [main] Processing chromosome scaffold1202 Processing chromosome scaffold1202 INFO [2014-07-02 15:02:32,379] [Preprocessor.java:241] [main] Processing chromosome scaffold1203 Processing chromosome scaffold1203 INFO [2014-07-02 15:02:32,486] [Preprocessor.java:241] [main] Processing chromosome scaffold1204 Processing chromosome scaffold1204 INFO [2014-07-02 15:02:32,536] [Preprocessor.java:241] [main] Processing chromosome scaffold1205 Processing chromosome scaffold1205 INFO [2014-07-02 15:02:32,561] [Preprocessor.java:241] [main] Processing chromosome scaffold1206 Processing chromosome scaffold1206 INFO [2014-07-02 15:02:32,573] [Preprocessor.java:241] [main] Processing chromosome scaffold1207 Processing chromosome scaffold1207 INFO [2014-07-02 15:02:32,577] [Preprocessor.java:241] [main] Processing chromosome scaffold1208 Processing chromosome scaffold1208 INFO [2014-07-02 15:02:32,583] [Preprocessor.java:241] [main] Processing chromosome scaffold1209 Processing chromosome scaffold1209 INFO [2014-07-02 15:02:32,621] [Preprocessor.java:241] [main] Processing chromosome scaffold121 Processing chromosome scaffold121 INFO [2014-07-02 15:02:32,892] [Preprocessor.java:241] [main] Processing chromosome scaffold1210 Processing chromosome scaffold1210 INFO [2014-07-02 15:02:32,978] [Preprocessor.java:241] [main] Processing chromosome scaffold1212 Processing chromosome scaffold1212 INFO [2014-07-02 15:02:33,023] [Preprocessor.java:241] [main] Processing chromosome scaffold1213 Processing chromosome scaffold1213 INFO [2014-07-02 15:02:38,632] [Preprocessor.java:241] [main] Processing chromosome scaffold1214 Processing chromosome scaffold1214 INFO [2014-07-02 15:02:38,685] [Preprocessor.java:241] [main] Processing chromosome scaffold1217 Processing chromosome scaffold1217 INFO [2014-07-02 15:02:38,722] [Preprocessor.java:241] [main] Processing chromosome scaffold1218 Processing chromosome scaffold1218 INFO [2014-07-02 15:02:38,729] [Preprocessor.java:241] [main] Processing chromosome scaffold1219 Processing chromosome scaffold1219 .INFO [2014-07-02 15:02:38,938] [Preprocessor.java:241] [main] Processing chromosome scaffold122 Processing chromosome scaffold122 INFO [2014-07-02 15:02:39,025] [Preprocessor.java:241] [main] Processing chromosome scaffold1220 Processing chromosome scaffold1220 INFO [2014-07-02 15:02:39,060] [Preprocessor.java:241] [main] Processing chromosome scaffold1221 Processing chromosome scaffold1221 INFO [2014-07-02 15:02:39,148] [Preprocessor.java:241] [main] Processing chromosome scaffold1222 Processing chromosome scaffold1222 INFO [2014-07-02 15:02:39,247] [Preprocessor.java:241] [main] Processing chromosome scaffold1225 Processing chromosome scaffold1225 INFO [2014-07-02 15:02:39,263] [Preprocessor.java:241] [main] Processing chromosome scaffold1226 Processing chromosome scaffold1226 INFO [2014-07-02 15:02:39,306] [Preprocessor.java:241] [main] Processing chromosome scaffold1227 Processing chromosome scaffold1227 INFO [2014-07-02 15:02:39,362] [Preprocessor.java:241] [main] Processing chromosome scaffold1228 Processing chromosome scaffold1228 INFO [2014-07-02 15:02:51,155] [Preprocessor.java:241] [main] Processing chromosome scaffold123 Processing chromosome scaffold123 INFO [2014-07-02 15:02:51,179] [Preprocessor.java:241] [main] Processing chromosome scaffold1230 Processing chromosome scaffold1230 INFO [2014-07-02 15:02:51,187] [Preprocessor.java:241] [main] Processing chromosome scaffold1231 Processing chromosome scaffold1231 INFO [2014-07-02 15:02:51,246] [Preprocessor.java:241] [main] Processing chromosome scaffold1232 Processing chromosome scaffold1232 INFO [2014-07-02 15:02:51,370] [Preprocessor.java:241] [main] Processing chromosome scaffold1233 Processing chromosome scaffold1233 INFO [2014-07-02 15:02:51,392] [Preprocessor.java:241] [main] Processing chromosome scaffold1234 Processing chromosome scaffold1234 INFO [2014-07-02 15:02:51,460] [Preprocessor.java:241] [main] Processing chromosome scaffold1235 Processing chromosome scaffold1235 INFO [2014-07-02 15:02:51,509] [Preprocessor.java:241] [main] Processing chromosome scaffold1236 Processing chromosome scaffold1236 INFO [2014-07-02 15:02:51,523] [Preprocessor.java:241] [main] Processing chromosome scaffold1237 Processing chromosome scaffold1237 INFO [2014-07-02 15:02:51,570] [Preprocessor.java:241] [main] Processing chromosome scaffold1238 Processing chromosome scaffold1238 INFO [2014-07-02 15:02:51,643] [Preprocessor.java:241] [main] Processing chromosome scaffold1240 Processing chromosome scaffold1240 INFO [2014-07-02 15:02:51,659] [Preprocessor.java:241] [main] Processing chromosome scaffold1241 Processing chromosome scaffold1241 INFO [2014-07-02 15:02:51,755] [Preprocessor.java:241] [main] Processing chromosome scaffold1242 Processing chromosome scaffold1242 INFO [2014-07-02 15:02:51,790] [Preprocessor.java:241] [main] Processing chromosome scaffold1243 Processing chromosome scaffold1243 INFO [2014-07-02 15:02:51,800] [Preprocessor.java:241] [main] Processing chromosome scaffold1244 Processing chromosome scaffold1244 INFO [2014-07-02 15:02:51,862] [Preprocessor.java:241] [main] Processing chromosome scaffold1245 Processing chromosome scaffold1245 INFO [2014-07-02 15:02:51,931] [Preprocessor.java:241] [main] Processing chromosome scaffold1246 Processing chromosome scaffold1246 INFO [2014-07-02 15:02:51,968] [Preprocessor.java:241] [main] Processing chromosome scaffold1247 Processing chromosome scaffold1247 INFO [2014-07-02 15:02:52,026] [Preprocessor.java:241] [main] Processing chromosome scaffold1249 Processing chromosome scaffold1249 INFO [2014-07-02 15:02:52,128] [Preprocessor.java:241] [main] Processing chromosome scaffold1250 Processing chromosome scaffold1250 INFO [2014-07-02 15:02:52,146] [Preprocessor.java:241] [main] Processing chromosome scaffold1251 Processing chromosome scaffold1251 INFO [2014-07-02 15:02:52,166] [Preprocessor.java:241] [main] Processing chromosome scaffold1252 Processing chromosome scaffold1252 INFO [2014-07-02 15:02:52,199] [Preprocessor.java:241] [main] Processing chromosome scaffold1253 Processing chromosome scaffold1253 INFO [2014-07-02 15:02:52,242] [Preprocessor.java:241] [main] Processing chromosome scaffold1254 Processing chromosome scaffold1254 INFO [2014-07-02 15:02:52,297] [Preprocessor.java:241] [main] Processing chromosome scaffold1255 Processing chromosome scaffold1255 INFO [2014-07-02 15:03:03,952] [Preprocessor.java:241] [main] Processing chromosome scaffold1256 Processing chromosome scaffold1256 INFO [2014-07-02 15:03:03,995] [Preprocessor.java:241] [main] Processing chromosome scaffold1257 Processing chromosome scaffold1257 INFO [2014-07-02 15:03:04,002] [Preprocessor.java:241] [main] Processing chromosome scaffold1258 Processing chromosome scaffold1258 INFO [2014-07-02 15:03:04,131] [Preprocessor.java:241] [main] Processing chromosome scaffold1259 Processing chromosome scaffold1259 INFO [2014-07-02 15:03:04,154] [Preprocessor.java:241] [main] Processing chromosome scaffold126 Processing chromosome scaffold126 INFO [2014-07-02 15:03:04,187] [Preprocessor.java:241] [main] Processing chromosome scaffold1260 Processing chromosome scaffold1260 INFO [2014-07-02 15:03:04,212] [Preprocessor.java:241] [main] Processing chromosome scaffold1261 Processing chromosome scaffold1261 INFO [2014-07-02 15:03:04,245] [Preprocessor.java:241] [main] Processing chromosome scaffold1262 Processing chromosome scaffold1262 INFO [2014-07-02 15:03:04,345] [Preprocessor.java:241] [main] Processing chromosome scaffold1263 Processing chromosome scaffold1263 INFO [2014-07-02 15:03:04,354] [Preprocessor.java:241] [main] Processing chromosome scaffold1264 Processing chromosome scaffold1264 INFO [2014-07-02 15:03:04,411] [Preprocessor.java:241] [main] Processing chromosome scaffold1266 Processing chromosome scaffold1266 INFO [2014-07-02 15:03:04,443] [Preprocessor.java:241] [main] Processing chromosome scaffold1267 Processing chromosome scaffold1267 INFO [2014-07-02 15:03:04,554] [Preprocessor.java:241] [main] Processing chromosome scaffold1268 Processing chromosome scaffold1268 INFO [2014-07-02 15:03:04,580] [Preprocessor.java:241] [main] Processing chromosome scaffold1269 Processing chromosome scaffold1269 INFO [2014-07-02 15:03:04,592] [Preprocessor.java:241] [main] Processing chromosome scaffold127 Processing chromosome scaffold127 INFO [2014-07-02 15:03:04,617] [Preprocessor.java:241] [main] Processing chromosome scaffold1270 Processing chromosome scaffold1270 INFO [2014-07-02 15:03:04,624] [Preprocessor.java:241] [main] Processing chromosome scaffold1271 Processing chromosome scaffold1271 INFO [2014-07-02 15:03:04,674] [Preprocessor.java:241] [main] Processing chromosome scaffold1272 Processing chromosome scaffold1272 INFO [2014-07-02 15:03:04,711] [Preprocessor.java:241] [main] Processing chromosome scaffold1273 Processing chromosome scaffold1273 INFO [2014-07-02 15:03:04,716] [Preprocessor.java:241] [main] Processing chromosome scaffold1274 Processing chromosome scaffold1274 INFO [2014-07-02 15:03:04,718] [Preprocessor.java:241] [main] Processing chromosome scaffold1275 Processing chromosome scaffold1275 INFO [2014-07-02 15:03:04,723] [Preprocessor.java:241] [main] Processing chromosome scaffold1276 Processing chromosome scaffold1276 INFO [2014-07-02 15:03:04,744] [Preprocessor.java:241] [main] Processing chromosome scaffold1277 Processing chromosome scaffold1277 INFO [2014-07-02 15:03:04,763] [Preprocessor.java:241] [main] Processing chromosome scaffold1278 Processing chromosome scaffold1278 INFO [2014-07-02 15:03:04,783] [Preprocessor.java:241] [main] Processing chromosome scaffold1279 Processing chromosome scaffold1279 INFO [2014-07-02 15:03:04,826] [Preprocessor.java:241] [main] Processing chromosome scaffold128 Processing chromosome scaffold128 INFO [2014-07-02 15:03:04,904] [Preprocessor.java:241] [main] Processing chromosome scaffold1280 Processing chromosome scaffold1280 INFO [2014-07-02 15:03:04,929] [Preprocessor.java:241] [main] Processing chromosome scaffold1281 Processing chromosome scaffold1281 INFO [2014-07-02 15:03:04,936] [Preprocessor.java:241] [main] Processing chromosome scaffold1282 Processing chromosome scaffold1282 INFO [2014-07-02 15:03:04,980] [Preprocessor.java:241] [main] Processing chromosome scaffold1283 Processing chromosome scaffold1283 INFO [2014-07-02 15:03:05,027] [Preprocessor.java:241] [main] Processing chromosome scaffold1284 Processing chromosome scaffold1284 INFO [2014-07-02 15:03:05,042] [Preprocessor.java:241] [main] Processing chromosome scaffold1286 Processing chromosome scaffold1286 INFO [2014-07-02 15:03:05,105] [Preprocessor.java:241] [main] Processing chromosome scaffold1288 Processing chromosome scaffold1288 INFO [2014-07-02 15:03:10,241] [Preprocessor.java:241] [main] Processing chromosome scaffold1289 Processing chromosome scaffold1289 INFO [2014-07-02 15:03:10,272] [Preprocessor.java:241] [main] Processing chromosome scaffold129 Processing chromosome scaffold129 INFO [2014-07-02 15:03:10,283] [Preprocessor.java:241] [main] Processing chromosome scaffold1290 Processing chromosome scaffold1290 INFO [2014-07-02 15:03:10,331] [Preprocessor.java:241] [main] Processing chromosome scaffold1291 Processing chromosome scaffold1291 INFO [2014-07-02 15:03:10,346] [Preprocessor.java:241] [main] Processing chromosome scaffold1292 Processing chromosome scaffold1292 INFO [2014-07-02 15:03:10,359] [Preprocessor.java:241] [main] Processing chromosome scaffold1293 Processing chromosome scaffold1293 INFO [2014-07-02 15:03:10,432] [Preprocessor.java:241] [main] Processing chromosome scaffold1295 Processing chromosome scaffold1295 INFO [2014-07-02 15:03:10,476] [Preprocessor.java:241] [main] Processing chromosome scaffold1297 Processing chromosome scaffold1297 INFO [2014-07-02 15:03:10,555] [Preprocessor.java:241] [main] Processing chromosome scaffold1298 Processing chromosome scaffold1298 INFO [2014-07-02 15:03:10,593] [Preprocessor.java:241] [main] Processing chromosome scaffold1299 Processing chromosome scaffold1299 .INFO [2014-07-02 15:03:10,665] [Preprocessor.java:241] [main] Processing chromosome scaffold13 Processing chromosome scaffold13 INFO [2014-07-02 15:03:10,739] [Preprocessor.java:241] [main] Processing chromosome scaffold130 Processing chromosome scaffold130 INFO [2014-07-02 15:03:10,791] [Preprocessor.java:241] [main] Processing chromosome scaffold1300 Processing chromosome scaffold1300 INFO [2014-07-02 15:03:10,851] [Preprocessor.java:241] [main] Processing chromosome scaffold1301 Processing chromosome scaffold1301 INFO [2014-07-02 15:03:39,464] [Preprocessor.java:241] [main] Processing chromosome scaffold1302 Processing chromosome scaffold1302 INFO [2014-07-02 15:03:39,516] [Preprocessor.java:241] [main] Processing chromosome scaffold1304 Processing chromosome scaffold1304 INFO [2014-07-02 15:03:39,566] [Preprocessor.java:241] [main] Processing chromosome scaffold1307 Processing chromosome scaffold1307 INFO [2014-07-02 15:03:39,738] [Preprocessor.java:241] [main] Processing chromosome scaffold1308 Processing chromosome scaffold1308 INFO [2014-07-02 15:03:39,763] [Preprocessor.java:241] [main] Processing chromosome scaffold1309 Processing chromosome scaffold1309 INFO [2014-07-02 15:03:39,849] [Preprocessor.java:241] [main] Processing chromosome scaffold1311 Processing chromosome scaffold1311 INFO [2014-07-02 15:03:39,855] [Preprocessor.java:241] [main] Processing chromosome scaffold1312 Processing chromosome scaffold1312 INFO [2014-07-02 15:03:39,885] [Preprocessor.java:241] [main] Processing chromosome scaffold1314 Processing chromosome scaffold1314 INFO [2014-07-02 15:03:39,913] [Preprocessor.java:241] [main] Processing chromosome scaffold1315 Processing chromosome scaffold1315 INFO [2014-07-02 15:03:40,012] [Preprocessor.java:241] [main] Processing chromosome scaffold1316 Processing chromosome scaffold1316 INFO [2014-07-02 15:03:40,099] [Preprocessor.java:241] [main] Processing chromosome scaffold1317 Processing chromosome scaffold1317 INFO [2014-07-02 15:03:40,137] [Preprocessor.java:241] [main] Processing chromosome scaffold1318 Processing chromosome scaffold1318 INFO [2014-07-02 15:03:40,166] [Preprocessor.java:241] [main] Processing chromosome scaffold132 Processing chromosome scaffold132 INFO [2014-07-02 15:03:40,210] [Preprocessor.java:241] [main] Processing chromosome scaffold1320 Processing chromosome scaffold1320 INFO [2014-07-02 15:03:40,235] [Preprocessor.java:241] [main] Processing chromosome scaffold1321 Processing chromosome scaffold1321 INFO [2014-07-02 15:03:40,265] [Preprocessor.java:241] [main] Processing chromosome scaffold1322 Processing chromosome scaffold1322 INFO [2014-07-02 15:03:46,445] [Preprocessor.java:241] [main] Processing chromosome scaffold1323 Processing chromosome scaffold1323 INFO [2014-07-02 15:03:46,478] [Preprocessor.java:241] [main] Processing chromosome scaffold1324 Processing chromosome scaffold1324 INFO [2014-07-02 15:03:46,592] [Preprocessor.java:241] [main] Processing chromosome scaffold1325 Processing chromosome scaffold1325 INFO [2014-07-02 15:03:46,619] [Preprocessor.java:241] [main] Processing chromosome scaffold1326 Processing chromosome scaffold1326 INFO [2014-07-02 15:03:46,626] [Preprocessor.java:241] [main] Processing chromosome scaffold1327 Processing chromosome scaffold1327 INFO [2014-07-02 15:03:46,695] [Preprocessor.java:241] [main] Processing chromosome scaffold1328 Processing chromosome scaffold1328 INFO [2014-07-02 15:03:46,737] [Preprocessor.java:241] [main] Processing chromosome scaffold1329 Processing chromosome scaffold1329 INFO [2014-07-02 15:03:46,789] [Preprocessor.java:241] [main] Processing chromosome scaffold133 Processing chromosome scaffold133 INFO [2014-07-02 15:03:46,810] [Preprocessor.java:241] [main] Processing chromosome scaffold1330 Processing chromosome scaffold1330 INFO [2014-07-02 15:03:46,860] [Preprocessor.java:241] [main] Processing chromosome scaffold1331 Processing chromosome scaffold1331 INFO [2014-07-02 15:03:46,918] [Preprocessor.java:241] [main] Processing chromosome scaffold1333 Processing chromosome scaffold1333 INFO [2014-07-02 15:03:46,988] [Preprocessor.java:241] [main] Processing chromosome scaffold1334 Processing chromosome scaffold1334 INFO [2014-07-02 15:03:47,000] [Preprocessor.java:241] [main] Processing chromosome scaffold1335 Processing chromosome scaffold1335 INFO [2014-07-02 15:03:47,007] [Preprocessor.java:241] [main] Processing chromosome scaffold1336 Processing chromosome scaffold1336 INFO [2014-07-02 15:03:47,029] [Preprocessor.java:241] [main] Processing chromosome scaffold1337 Processing chromosome scaffold1337 INFO [2014-07-02 15:03:47,077] [Preprocessor.java:241] [main] Processing chromosome scaffold1338 Processing chromosome scaffold1338 INFO [2014-07-02 15:03:47,096] [Preprocessor.java:241] [main] Processing chromosome scaffold1339 Processing chromosome scaffold1339 INFO [2014-07-02 15:03:47,125] [Preprocessor.java:241] [main] Processing chromosome scaffold134 Processing chromosome scaffold134 INFO [2014-07-02 15:03:47,134] [Preprocessor.java:241] [main] Processing chromosome scaffold1340 Processing chromosome scaffold1340 INFO [2014-07-02 15:03:47,193] [Preprocessor.java:241] [main] Processing chromosome scaffold1341 Processing chromosome scaffold1341 INFO [2014-07-02 15:03:47,246] [Preprocessor.java:241] [main] Processing chromosome scaffold1342 Processing chromosome scaffold1342 INFO [2014-07-02 15:03:47,282] [Preprocessor.java:241] [main] Processing chromosome scaffold1343 Processing chromosome scaffold1343 INFO [2014-07-02 15:03:47,305] [Preprocessor.java:241] [main] Processing chromosome scaffold1344 Processing chromosome scaffold1344 INFO [2014-07-02 15:03:47,323] [Preprocessor.java:241] [main] Processing chromosome scaffold1345 Processing chromosome scaffold1345 INFO [2014-07-02 15:03:47,373] [Preprocessor.java:241] [main] Processing chromosome scaffold1347 Processing chromosome scaffold1347 INFO [2014-07-02 15:03:47,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1348 Processing chromosome scaffold1348 INFO [2014-07-02 15:03:47,474] [Preprocessor.java:241] [main] Processing chromosome scaffold1349 Processing chromosome scaffold1349 INFO [2014-07-02 15:03:47,505] [Preprocessor.java:241] [main] Processing chromosome scaffold1350 Processing chromosome scaffold1350 INFO [2014-07-02 15:03:47,579] [Preprocessor.java:241] [main] Processing chromosome scaffold1351 Processing chromosome scaffold1351 INFO [2014-07-02 15:03:47,599] [Preprocessor.java:241] [main] Processing chromosome scaffold1352 Processing chromosome scaffold1352 INFO [2014-07-02 15:03:47,645] [Preprocessor.java:241] [main] Processing chromosome scaffold1353 Processing chromosome scaffold1353 INFO [2014-07-02 15:03:47,655] [Preprocessor.java:241] [main] Processing chromosome scaffold1354 Processing chromosome scaffold1354 INFO [2014-07-02 15:03:47,749] [Preprocessor.java:241] [main] Processing chromosome scaffold1355 Processing chromosome scaffold1355 INFO [2014-07-02 15:03:47,765] [Preprocessor.java:241] [main] Processing chromosome scaffold1357 Processing chromosome scaffold1357 INFO [2014-07-02 15:03:47,785] [Preprocessor.java:241] [main] Processing chromosome scaffold1358 Processing chromosome scaffold1358 INFO [2014-07-02 15:03:47,829] [Preprocessor.java:241] [main] Processing chromosome scaffold1359 Processing chromosome scaffold1359 INFO [2014-07-02 15:03:47,933] [Preprocessor.java:241] [main] Processing chromosome scaffold136 Processing chromosome scaffold136 INFO [2014-07-02 15:03:47,940] [Preprocessor.java:241] [main] Processing chromosome scaffold1360 Processing chromosome scaffold1360 INFO [2014-07-02 15:03:59,315] [Preprocessor.java:241] [main] Processing chromosome scaffold1361 Processing chromosome scaffold1361 INFO [2014-07-02 15:03:59,355] [Preprocessor.java:241] [main] Processing chromosome scaffold1362 Processing chromosome scaffold1362 INFO [2014-07-02 15:04:01,058] [Preprocessor.java:241] [main] Processing chromosome scaffold1363 Processing chromosome scaffold1363 INFO [2014-07-02 15:04:01,080] [Preprocessor.java:241] [main] Processing chromosome scaffold1364 Processing chromosome scaffold1364 INFO [2014-07-02 15:04:01,383] [Preprocessor.java:241] [main] Processing chromosome scaffold1365 Processing chromosome scaffold1365 INFO [2014-07-02 15:04:01,408] [Preprocessor.java:241] [main] Processing chromosome scaffold1366 Processing chromosome scaffold1366 INFO [2014-07-02 15:04:01,492] [Preprocessor.java:241] [main] Processing chromosome scaffold1367 Processing chromosome scaffold1367 INFO [2014-07-02 15:04:01,508] [Preprocessor.java:241] [main] Processing chromosome scaffold1368 Processing chromosome scaffold1368 INFO [2014-07-02 15:04:01,531] [Preprocessor.java:241] [main] Processing chromosome scaffold1369 Processing chromosome scaffold1369 .INFO [2014-07-02 15:04:01,564] [Preprocessor.java:241] [main] Processing chromosome scaffold137 Processing chromosome scaffold137 INFO [2014-07-02 15:04:01,587] [Preprocessor.java:241] [main] Processing chromosome scaffold1370 Processing chromosome scaffold1370 INFO [2014-07-02 15:04:01,642] [Preprocessor.java:241] [main] Processing chromosome scaffold1371 Processing chromosome scaffold1371 INFO [2014-07-02 15:04:01,671] [Preprocessor.java:241] [main] Processing chromosome scaffold1372 Processing chromosome scaffold1372 INFO [2014-07-02 15:04:01,739] [Preprocessor.java:241] [main] Processing chromosome scaffold1373 Processing chromosome scaffold1373 INFO [2014-07-02 15:04:01,780] [Preprocessor.java:241] [main] Processing chromosome scaffold1374 Processing chromosome scaffold1374 INFO [2014-07-02 15:04:01,802] [Preprocessor.java:241] [main] Processing chromosome scaffold1375 Processing chromosome scaffold1375 INFO [2014-07-02 15:04:01,861] [Preprocessor.java:241] [main] Processing chromosome scaffold1376 Processing chromosome scaffold1376 INFO [2014-07-02 15:04:01,887] [Preprocessor.java:241] [main] Processing chromosome scaffold1377 Processing chromosome scaffold1377 INFO [2014-07-02 15:04:01,906] [Preprocessor.java:241] [main] Processing chromosome scaffold1378 Processing chromosome scaffold1378 INFO [2014-07-02 15:04:01,923] [Preprocessor.java:241] [main] Processing chromosome scaffold1379 Processing chromosome scaffold1379 INFO [2014-07-02 15:04:01,931] [Preprocessor.java:241] [main] Processing chromosome scaffold138 Processing chromosome scaffold138 INFO [2014-07-02 15:04:01,985] [Preprocessor.java:241] [main] Processing chromosome scaffold1380 Processing chromosome scaffold1380 INFO [2014-07-02 15:04:02,003] [Preprocessor.java:241] [main] Processing chromosome scaffold1381 Processing chromosome scaffold1381 INFO [2014-07-02 15:04:02,017] [Preprocessor.java:241] [main] Processing chromosome scaffold1382 Processing chromosome scaffold1382 INFO [2014-07-02 15:04:02,056] [Preprocessor.java:241] [main] Processing chromosome scaffold1383 Processing chromosome scaffold1383 INFO [2014-07-02 15:04:02,078] [Preprocessor.java:241] [main] Processing chromosome scaffold1384 Processing chromosome scaffold1384 INFO [2014-07-02 15:04:02,114] [Preprocessor.java:241] [main] Processing chromosome scaffold1385 Processing chromosome scaffold1385 INFO [2014-07-02 15:04:18,147] [Preprocessor.java:241] [main] Processing chromosome scaffold1386 Processing chromosome scaffold1386 INFO [2014-07-02 15:04:18,204] [Preprocessor.java:241] [main] Processing chromosome scaffold1388 Processing chromosome scaffold1388 INFO [2014-07-02 15:04:18,231] [Preprocessor.java:241] [main] Processing chromosome scaffold1389 Processing chromosome scaffold1389 INFO [2014-07-02 15:04:18,267] [Preprocessor.java:241] [main] Processing chromosome scaffold139 Processing chromosome scaffold139 INFO [2014-07-02 15:04:18,288] [Preprocessor.java:241] [main] Processing chromosome scaffold1390 Processing chromosome scaffold1390 INFO [2014-07-02 15:04:18,324] [Preprocessor.java:241] [main] Processing chromosome scaffold1391 Processing chromosome scaffold1391 INFO [2014-07-02 15:04:18,446] [Preprocessor.java:241] [main] Processing chromosome scaffold1392 Processing chromosome scaffold1392 INFO [2014-07-02 15:04:18,474] [Preprocessor.java:241] [main] Processing chromosome scaffold1393 Processing chromosome scaffold1393 INFO [2014-07-02 15:04:18,511] [Preprocessor.java:241] [main] Processing chromosome scaffold1394 Processing chromosome scaffold1394 INFO [2014-07-02 15:04:18,540] [Preprocessor.java:241] [main] Processing chromosome scaffold1395 Processing chromosome scaffold1395 INFO [2014-07-02 15:04:18,556] [Preprocessor.java:241] [main] Processing chromosome scaffold1396 Processing chromosome scaffold1396 INFO [2014-07-02 15:04:18,578] [Preprocessor.java:241] [main] Processing chromosome scaffold1397 Processing chromosome scaffold1397 INFO [2014-07-02 15:04:18,633] [Preprocessor.java:241] [main] Processing chromosome scaffold1399 Processing chromosome scaffold1399 INFO [2014-07-02 15:04:18,709] [Preprocessor.java:241] [main] Processing chromosome scaffold140 Processing chromosome scaffold140 INFO [2014-07-02 15:04:18,800] [Preprocessor.java:241] [main] Processing chromosome scaffold1400 Processing chromosome scaffold1400 INFO [2014-07-02 15:04:18,861] [Preprocessor.java:241] [main] Processing chromosome scaffold1401 Processing chromosome scaffold1401 INFO [2014-07-02 15:04:18,896] [Preprocessor.java:241] [main] Processing chromosome scaffold1402 Processing chromosome scaffold1402 INFO [2014-07-02 15:04:19,001] [Preprocessor.java:241] [main] Processing chromosome scaffold1403 Processing chromosome scaffold1403 INFO [2014-07-02 15:04:19,103] [Preprocessor.java:241] [main] Processing chromosome scaffold1404 Processing chromosome scaffold1404 INFO [2014-07-02 15:04:19,196] [Preprocessor.java:241] [main] Processing chromosome scaffold1405 Processing chromosome scaffold1405 INFO [2014-07-02 15:04:19,215] [Preprocessor.java:241] [main] Processing chromosome scaffold1408 Processing chromosome scaffold1408 INFO [2014-07-02 15:04:19,257] [Preprocessor.java:241] [main] Processing chromosome scaffold1409 Processing chromosome scaffold1409 INFO [2014-07-02 15:04:19,334] [Preprocessor.java:241] [main] Processing chromosome scaffold141 Processing chromosome scaffold141 INFO [2014-07-02 15:04:19,384] [Preprocessor.java:241] [main] Processing chromosome scaffold1410 Processing chromosome scaffold1410 INFO [2014-07-02 15:04:19,455] [Preprocessor.java:241] [main] Processing chromosome scaffold1411 Processing chromosome scaffold1411 INFO [2014-07-02 15:04:19,482] [Preprocessor.java:241] [main] Processing chromosome scaffold1413 Processing chromosome scaffold1413 INFO [2014-07-02 15:04:19,513] [Preprocessor.java:241] [main] Processing chromosome scaffold1414 Processing chromosome scaffold1414 INFO [2014-07-02 15:04:19,559] [Preprocessor.java:241] [main] Processing chromosome scaffold1415 Processing chromosome scaffold1415 INFO [2014-07-02 15:04:19,585] [Preprocessor.java:241] [main] Processing chromosome scaffold1416 Processing chromosome scaffold1416 INFO [2014-07-02 15:04:19,644] [Preprocessor.java:241] [main] Processing chromosome scaffold1417 Processing chromosome scaffold1417 INFO [2014-07-02 15:04:19,659] [Preprocessor.java:241] [main] Processing chromosome scaffold1418 Processing chromosome scaffold1418 INFO [2014-07-02 15:04:19,680] [Preprocessor.java:241] [main] Processing chromosome scaffold1419 Processing chromosome scaffold1419 INFO [2014-07-02 15:04:19,771] [Preprocessor.java:241] [main] Processing chromosome scaffold142 Processing chromosome scaffold142 INFO [2014-07-02 15:04:33,273] [Preprocessor.java:241] [main] Processing chromosome scaffold1420 Processing chromosome scaffold1420 INFO [2014-07-02 15:04:33,298] [Preprocessor.java:241] [main] Processing chromosome scaffold1421 Processing chromosome scaffold1421 INFO [2014-07-02 15:04:33,337] [Preprocessor.java:241] [main] Processing chromosome scaffold1422 Processing chromosome scaffold1422 INFO [2014-07-02 15:04:33,346] [Preprocessor.java:241] [main] Processing chromosome scaffold1423 Processing chromosome scaffold1423 INFO [2014-07-02 15:04:33,510] [Preprocessor.java:241] [main] Processing chromosome scaffold1424 Processing chromosome scaffold1424 INFO [2014-07-02 15:04:33,536] [Preprocessor.java:241] [main] Processing chromosome scaffold1425 Processing chromosome scaffold1425 INFO [2014-07-02 15:04:33,574] [Preprocessor.java:241] [main] Processing chromosome scaffold1426 Processing chromosome scaffold1426 INFO [2014-07-02 15:04:33,638] [Preprocessor.java:241] [main] Processing chromosome scaffold1427 Processing chromosome scaffold1427 INFO [2014-07-02 15:04:33,675] [Preprocessor.java:241] [main] Processing chromosome scaffold1428 Processing chromosome scaffold1428 INFO [2014-07-02 15:04:33,688] [Preprocessor.java:241] [main] Processing chromosome scaffold1429 Processing chromosome scaffold1429 INFO [2014-07-02 15:04:33,698] [Preprocessor.java:241] [main] Processing chromosome scaffold143 Processing chromosome scaffold143 INFO [2014-07-02 15:04:33,767] [Preprocessor.java:241] [main] Processing chromosome scaffold1431 Processing chromosome scaffold1431 INFO [2014-07-02 15:04:33,835] [Preprocessor.java:241] [main] Processing chromosome scaffold1433 Processing chromosome scaffold1433 INFO [2014-07-02 15:04:33,894] [Preprocessor.java:241] [main] Processing chromosome scaffold1435 Processing chromosome scaffold1435 INFO [2014-07-02 15:04:33,915] [Preprocessor.java:241] [main] Processing chromosome scaffold1436 Processing chromosome scaffold1436 INFO [2014-07-02 15:04:33,934] [Preprocessor.java:241] [main] Processing chromosome scaffold1437 Processing chromosome scaffold1437 INFO [2014-07-02 15:04:33,990] [Preprocessor.java:241] [main] Processing chromosome scaffold1438 Processing chromosome scaffold1438 INFO [2014-07-02 15:04:34,021] [Preprocessor.java:241] [main] Processing chromosome scaffold1439 Processing chromosome scaffold1439 INFO [2014-07-02 15:04:34,042] [Preprocessor.java:241] [main] Processing chromosome scaffold144 Processing chromosome scaffold144 INFO [2014-07-02 15:04:34,132] [Preprocessor.java:241] [main] Processing chromosome scaffold1440 Processing chromosome scaffold1440 INFO [2014-07-02 15:04:34,157] [Preprocessor.java:241] [main] Processing chromosome scaffold1441 Processing chromosome scaffold1441 INFO [2014-07-02 15:04:34,197] [Preprocessor.java:241] [main] Processing chromosome scaffold1442 Processing chromosome scaffold1442 INFO [2014-07-02 15:04:34,231] [Preprocessor.java:241] [main] Processing chromosome scaffold1443 Processing chromosome scaffold1443 INFO [2014-07-02 15:04:34,238] [Preprocessor.java:241] [main] Processing chromosome scaffold1445 Processing chromosome scaffold1445 INFO [2014-07-02 15:04:34,290] [Preprocessor.java:241] [main] Processing chromosome scaffold1446 Processing chromosome scaffold1446 INFO [2014-07-02 15:04:34,326] [Preprocessor.java:241] [main] Processing chromosome scaffold1447 Processing chromosome scaffold1447 INFO [2014-07-02 15:04:44,604] [Preprocessor.java:241] [main] Processing chromosome scaffold1448 Processing chromosome scaffold1448 INFO [2014-07-02 15:04:44,641] [Preprocessor.java:241] [main] Processing chromosome scaffold1449 Processing chromosome scaffold1449 INFO [2014-07-02 15:04:44,668] [Preprocessor.java:241] [main] Processing chromosome scaffold145 Processing chromosome scaffold145 INFO [2014-07-02 15:04:44,783] [Preprocessor.java:241] [main] Processing chromosome scaffold1450 Processing chromosome scaffold1450 INFO [2014-07-02 15:04:44,808] [Preprocessor.java:241] [main] Processing chromosome scaffold1451 Processing chromosome scaffold1451 INFO [2014-07-02 15:04:44,837] [Preprocessor.java:241] [main] Processing chromosome scaffold1452 Processing chromosome scaffold1452 INFO [2014-07-02 15:04:44,890] [Preprocessor.java:241] [main] Processing chromosome scaffold1453 Processing chromosome scaffold1453 INFO [2014-07-02 15:04:44,903] [Preprocessor.java:241] [main] Processing chromosome scaffold1454 Processing chromosome scaffold1454 INFO [2014-07-02 15:04:44,914] [Preprocessor.java:241] [main] Processing chromosome scaffold1455 Processing chromosome scaffold1455 INFO [2014-07-02 15:04:44,958] [Preprocessor.java:241] [main] Processing chromosome scaffold1456 Processing chromosome scaffold1456 INFO [2014-07-02 15:04:44,982] [Preprocessor.java:241] [main] Processing chromosome scaffold1458 Processing chromosome scaffold1458 INFO [2014-07-02 15:04:44,988] [Preprocessor.java:241] [main] Processing chromosome scaffold1459 Processing chromosome scaffold1459 .INFO [2014-07-02 15:04:45,049] [Preprocessor.java:241] [main] Processing chromosome scaffold146 Processing chromosome scaffold146 INFO [2014-07-02 15:04:45,167] [Preprocessor.java:241] [main] Processing chromosome scaffold1460 Processing chromosome scaffold1460 INFO [2014-07-02 15:04:45,206] [Preprocessor.java:241] [main] Processing chromosome scaffold1461 Processing chromosome scaffold1461 INFO [2014-07-02 15:04:45,226] [Preprocessor.java:241] [main] Processing chromosome scaffold1462 Processing chromosome scaffold1462 INFO [2014-07-02 15:04:45,294] [Preprocessor.java:241] [main] Processing chromosome scaffold1463 Processing chromosome scaffold1463 INFO [2014-07-02 15:04:45,327] [Preprocessor.java:241] [main] Processing chromosome scaffold1464 Processing chromosome scaffold1464 INFO [2014-07-02 15:04:45,344] [Preprocessor.java:241] [main] Processing chromosome scaffold1466 Processing chromosome scaffold1466 INFO [2014-07-02 15:04:45,390] [Preprocessor.java:241] [main] Processing chromosome scaffold1467 Processing chromosome scaffold1467 INFO [2014-07-02 15:04:45,468] [Preprocessor.java:241] [main] Processing chromosome scaffold1468 Processing chromosome scaffold1468 INFO [2014-07-02 15:04:45,516] [Preprocessor.java:241] [main] Processing chromosome scaffold1469 Processing chromosome scaffold1469 INFO [2014-07-02 15:04:45,609] [Preprocessor.java:241] [main] Processing chromosome scaffold147 Processing chromosome scaffold147 INFO [2014-07-02 15:04:45,613] [Preprocessor.java:241] [main] Processing chromosome scaffold1470 Processing chromosome scaffold1470 INFO [2014-07-02 15:04:45,656] [Preprocessor.java:241] [main] Processing chromosome scaffold1471 Processing chromosome scaffold1471 INFO [2014-07-02 15:04:45,674] [Preprocessor.java:241] [main] Processing chromosome scaffold1472 Processing chromosome scaffold1472 INFO [2014-07-02 15:04:56,643] [Preprocessor.java:241] [main] Processing chromosome scaffold1473 Processing chromosome scaffold1473 INFO [2014-07-02 15:04:56,665] [Preprocessor.java:241] [main] Processing chromosome scaffold1474 Processing chromosome scaffold1474 INFO [2014-07-02 15:04:56,679] [Preprocessor.java:241] [main] Processing chromosome scaffold1475 Processing chromosome scaffold1475 INFO [2014-07-02 15:04:56,716] [Preprocessor.java:241] [main] Processing chromosome scaffold1476 Processing chromosome scaffold1476 INFO [2014-07-02 15:04:56,767] [Preprocessor.java:241] [main] Processing chromosome scaffold1477 Processing chromosome scaffold1477 INFO [2014-07-02 15:04:56,781] [Preprocessor.java:241] [main] Processing chromosome scaffold1478 Processing chromosome scaffold1478 INFO [2014-07-02 15:04:56,815] [Preprocessor.java:241] [main] Processing chromosome scaffold148 Processing chromosome scaffold148 INFO [2014-07-02 15:04:56,845] [Preprocessor.java:241] [main] Processing chromosome scaffold1480 Processing chromosome scaffold1480 INFO [2014-07-02 15:04:56,871] [Preprocessor.java:241] [main] Processing chromosome scaffold1481 Processing chromosome scaffold1481 INFO [2014-07-02 15:04:56,911] [Preprocessor.java:241] [main] Processing chromosome scaffold1483 Processing chromosome scaffold1483 INFO [2014-07-02 15:04:56,938] [Preprocessor.java:241] [main] Processing chromosome scaffold1484 Processing chromosome scaffold1484 INFO [2014-07-02 15:04:56,981] [Preprocessor.java:241] [main] Processing chromosome scaffold1485 Processing chromosome scaffold1485 INFO [2014-07-02 15:04:57,015] [Preprocessor.java:241] [main] Processing chromosome scaffold1486 Processing chromosome scaffold1486 INFO [2014-07-02 15:04:57,024] [Preprocessor.java:241] [main] Processing chromosome scaffold1488 Processing chromosome scaffold1488 INFO [2014-07-02 15:04:57,054] [Preprocessor.java:241] [main] Processing chromosome scaffold1489 Processing chromosome scaffold1489 INFO [2014-07-02 15:04:57,108] [Preprocessor.java:241] [main] Processing chromosome scaffold149 Processing chromosome scaffold149 INFO [2014-07-02 15:04:57,210] [Preprocessor.java:241] [main] Processing chromosome scaffold1490 Processing chromosome scaffold1490 INFO [2014-07-02 15:04:57,313] [Preprocessor.java:241] [main] Processing chromosome scaffold1491 Processing chromosome scaffold1491 INFO [2014-07-02 15:04:57,358] [Preprocessor.java:241] [main] Processing chromosome scaffold1492 Processing chromosome scaffold1492 INFO [2014-07-02 15:04:57,483] [Preprocessor.java:241] [main] Processing chromosome scaffold1493 Processing chromosome scaffold1493 INFO [2014-07-02 15:04:57,532] [Preprocessor.java:241] [main] Processing chromosome scaffold1494 Processing chromosome scaffold1494 INFO [2014-07-02 15:04:57,582] [Preprocessor.java:241] [main] Processing chromosome scaffold1495 Processing chromosome scaffold1495 INFO [2014-07-02 15:04:57,622] [Preprocessor.java:241] [main] Processing chromosome scaffold1496 Processing chromosome scaffold1496 INFO [2014-07-02 15:04:57,638] [Preprocessor.java:241] [main] Processing chromosome scaffold1497 Processing chromosome scaffold1497 INFO [2014-07-02 15:04:57,690] [Preprocessor.java:241] [main] Processing chromosome scaffold1498 Processing chromosome scaffold1498 INFO [2014-07-02 15:04:57,710] [Preprocessor.java:241] [main] Processing chromosome scaffold1499 Processing chromosome scaffold1499 INFO [2014-07-02 15:04:57,722] [Preprocessor.java:241] [main] Processing chromosome scaffold15 Processing chromosome scaffold15 INFO [2014-07-02 15:04:57,735] [Preprocessor.java:241] [main] Processing chromosome scaffold150 Processing chromosome scaffold150 INFO [2014-07-02 15:05:10,202] [Preprocessor.java:241] [main] Processing chromosome scaffold1500 Processing chromosome scaffold1500 INFO [2014-07-02 15:05:10,216] [Preprocessor.java:241] [main] Processing chromosome scaffold1501 Processing chromosome scaffold1501 INFO [2014-07-02 15:05:10,266] [Preprocessor.java:241] [main] Processing chromosome scaffold1502 Processing chromosome scaffold1502 INFO [2014-07-02 15:05:10,287] [Preprocessor.java:241] [main] Processing chromosome scaffold1503 Processing chromosome scaffold1503 INFO [2014-07-02 15:05:10,385] [Preprocessor.java:241] [main] Processing chromosome scaffold1505 Processing chromosome scaffold1505 INFO [2014-07-02 15:05:10,420] [Preprocessor.java:241] [main] Processing chromosome scaffold1506 Processing chromosome scaffold1506 INFO [2014-07-02 15:05:10,445] [Preprocessor.java:241] [main] Processing chromosome scaffold1507 Processing chromosome scaffold1507 INFO [2014-07-02 15:05:10,460] [Preprocessor.java:241] [main] Processing chromosome scaffold1508 Processing chromosome scaffold1508 INFO [2014-07-02 15:05:10,512] [Preprocessor.java:241] [main] Processing chromosome scaffold1509 Processing chromosome scaffold1509 INFO [2014-07-02 15:05:10,532] [Preprocessor.java:241] [main] Processing chromosome scaffold1511 Processing chromosome scaffold1511 INFO [2014-07-02 15:05:10,551] [Preprocessor.java:241] [main] Processing chromosome scaffold1512 Processing chromosome scaffold1512 INFO [2014-07-02 15:05:10,637] [Preprocessor.java:241] [main] Processing chromosome scaffold1514 Processing chromosome scaffold1514 INFO [2014-07-02 15:05:10,662] [Preprocessor.java:241] [main] Processing chromosome scaffold1515 Processing chromosome scaffold1515 INFO [2014-07-02 15:05:10,684] [Preprocessor.java:241] [main] Processing chromosome scaffold1516 Processing chromosome scaffold1516 INFO [2014-07-02 15:05:10,701] [Preprocessor.java:241] [main] Processing chromosome scaffold1517 Processing chromosome scaffold1517 INFO [2014-07-02 15:05:10,712] [Preprocessor.java:241] [main] Processing chromosome scaffold1518 Processing chromosome scaffold1518 INFO [2014-07-02 15:05:10,807] [Preprocessor.java:241] [main] Processing chromosome scaffold1519 Processing chromosome scaffold1519 INFO [2014-07-02 15:05:10,820] [Preprocessor.java:241] [main] Processing chromosome scaffold152 Processing chromosome scaffold152 INFO [2014-07-02 15:05:10,845] [Preprocessor.java:241] [main] Processing chromosome scaffold1520 Processing chromosome scaffold1520 INFO [2014-07-02 15:05:10,970] [Preprocessor.java:241] [main] Processing chromosome scaffold1521 Processing chromosome scaffold1521 INFO [2014-07-02 15:05:11,052] [Preprocessor.java:241] [main] Processing chromosome scaffold1522 Processing chromosome scaffold1522 INFO [2014-07-02 15:05:11,072] [Preprocessor.java:241] [main] Processing chromosome scaffold1524 Processing chromosome scaffold1524 INFO [2014-07-02 15:05:11,139] [Preprocessor.java:241] [main] Processing chromosome scaffold1525 Processing chromosome scaffold1525 INFO [2014-07-02 15:05:11,166] [Preprocessor.java:241] [main] Processing chromosome scaffold1526 Processing chromosome scaffold1526 INFO [2014-07-02 15:05:11,216] [Preprocessor.java:241] [main] Processing chromosome scaffold1527 Processing chromosome scaffold1527 INFO [2014-07-02 15:05:11,263] [Preprocessor.java:241] [main] Processing chromosome scaffold1528 Processing chromosome scaffold1528 INFO [2014-07-02 15:05:11,330] [Preprocessor.java:241] [main] Processing chromosome scaffold1529 Processing chromosome scaffold1529 INFO [2014-07-02 15:05:11,391] [Preprocessor.java:241] [main] Processing chromosome scaffold1530 Processing chromosome scaffold1530 INFO [2014-07-02 15:05:24,419] [Preprocessor.java:241] [main] Processing chromosome scaffold1531 Processing chromosome scaffold1531 INFO [2014-07-02 15:05:24,439] [Preprocessor.java:241] [main] Processing chromosome scaffold1532 Processing chromosome scaffold1532 INFO [2014-07-02 15:05:24,635] [Preprocessor.java:241] [main] Processing chromosome scaffold1533 Processing chromosome scaffold1533 .INFO [2014-07-02 15:05:24,712] [Preprocessor.java:241] [main] Processing chromosome scaffold1534 Processing chromosome scaffold1534 INFO [2014-07-02 15:05:24,739] [Preprocessor.java:241] [main] Processing chromosome scaffold1535 Processing chromosome scaffold1535 INFO [2014-07-02 15:05:24,758] [Preprocessor.java:241] [main] Processing chromosome scaffold1536 Processing chromosome scaffold1536 INFO [2014-07-02 15:05:24,785] [Preprocessor.java:241] [main] Processing chromosome scaffold1537 Processing chromosome scaffold1537 INFO [2014-07-02 15:05:24,805] [Preprocessor.java:241] [main] Processing chromosome scaffold1538 Processing chromosome scaffold1538 INFO [2014-07-02 15:05:24,816] [Preprocessor.java:241] [main] Processing chromosome scaffold1539 Processing chromosome scaffold1539 INFO [2014-07-02 15:05:24,845] [Preprocessor.java:241] [main] Processing chromosome scaffold154 Processing chromosome scaffold154 INFO [2014-07-02 15:05:24,905] [Preprocessor.java:241] [main] Processing chromosome scaffold1540 Processing chromosome scaffold1540 INFO [2014-07-02 15:05:24,914] [Preprocessor.java:241] [main] Processing chromosome scaffold1541 Processing chromosome scaffold1541 INFO [2014-07-02 15:05:24,976] [Preprocessor.java:241] [main] Processing chromosome scaffold1542 Processing chromosome scaffold1542 INFO [2014-07-02 15:05:24,981] [Preprocessor.java:241] [main] Processing chromosome scaffold1543 Processing chromosome scaffold1543 INFO [2014-07-02 15:05:25,013] [Preprocessor.java:241] [main] Processing chromosome scaffold1544 Processing chromosome scaffold1544 INFO [2014-07-02 15:05:25,030] [Preprocessor.java:241] [main] Processing chromosome scaffold1546 Processing chromosome scaffold1546 INFO [2014-07-02 15:05:25,078] [Preprocessor.java:241] [main] Processing chromosome scaffold1547 Processing chromosome scaffold1547 INFO [2014-07-02 15:05:25,097] [Preprocessor.java:241] [main] Processing chromosome scaffold1548 Processing chromosome scaffold1548 INFO [2014-07-02 15:05:25,117] [Preprocessor.java:241] [main] Processing chromosome scaffold1549 Processing chromosome scaffold1549 INFO [2014-07-02 15:05:25,144] [Preprocessor.java:241] [main] Processing chromosome scaffold155 Processing chromosome scaffold155 INFO [2014-07-02 15:05:25,191] [Preprocessor.java:241] [main] Processing chromosome scaffold1551 Processing chromosome scaffold1551 INFO [2014-07-02 15:05:25,230] [Preprocessor.java:241] [main] Processing chromosome scaffold1552 Processing chromosome scaffold1552 INFO [2014-07-02 15:05:25,234] [Preprocessor.java:241] [main] Processing chromosome scaffold1553 Processing chromosome scaffold1553 INFO [2014-07-02 15:05:25,276] [Preprocessor.java:241] [main] Processing chromosome scaffold1554 Processing chromosome scaffold1554 INFO [2014-07-02 15:05:25,340] [Preprocessor.java:241] [main] Processing chromosome scaffold1555 Processing chromosome scaffold1555 INFO [2014-07-02 15:05:25,346] [Preprocessor.java:241] [main] Processing chromosome scaffold1556 Processing chromosome scaffold1556 INFO [2014-07-02 15:05:25,389] [Preprocessor.java:241] [main] Processing chromosome scaffold1557 Processing chromosome scaffold1557 INFO [2014-07-02 15:05:25,395] [Preprocessor.java:241] [main] Processing chromosome scaffold1558 Processing chromosome scaffold1558 INFO [2014-07-02 15:05:25,418] [Preprocessor.java:241] [main] Processing chromosome scaffold1559 Processing chromosome scaffold1559 INFO [2014-07-02 15:05:25,466] [Preprocessor.java:241] [main] Processing chromosome scaffold156 Processing chromosome scaffold156 INFO [2014-07-02 15:05:25,630] [Preprocessor.java:241] [main] Processing chromosome scaffold1560 Processing chromosome scaffold1560 INFO [2014-07-02 15:05:25,673] [Preprocessor.java:241] [main] Processing chromosome scaffold1561 Processing chromosome scaffold1561 INFO [2014-07-02 15:05:41,728] [Preprocessor.java:241] [main] Processing chromosome scaffold1562 Processing chromosome scaffold1562 INFO [2014-07-02 15:05:41,792] [Preprocessor.java:241] [main] Processing chromosome scaffold1563 Processing chromosome scaffold1563 INFO [2014-07-02 15:05:41,818] [Preprocessor.java:241] [main] Processing chromosome scaffold1564 Processing chromosome scaffold1564 INFO [2014-07-02 15:05:41,888] [Preprocessor.java:241] [main] Processing chromosome scaffold1565 Processing chromosome scaffold1565 INFO [2014-07-02 15:05:41,894] [Preprocessor.java:241] [main] Processing chromosome scaffold1566 Processing chromosome scaffold1566 INFO [2014-07-02 15:05:41,911] [Preprocessor.java:241] [main] Processing chromosome scaffold1567 Processing chromosome scaffold1567 INFO [2014-07-02 15:05:41,941] [Preprocessor.java:241] [main] Processing chromosome scaffold1569 Processing chromosome scaffold1569 INFO [2014-07-02 15:05:42,039] [Preprocessor.java:241] [main] Processing chromosome scaffold157 Processing chromosome scaffold157 INFO [2014-07-02 15:05:42,219] [Preprocessor.java:241] [main] Processing chromosome scaffold1570 Processing chromosome scaffold1570 INFO [2014-07-02 15:05:42,246] [Preprocessor.java:241] [main] Processing chromosome scaffold1571 Processing chromosome scaffold1571 INFO [2014-07-02 15:05:42,305] [Preprocessor.java:241] [main] Processing chromosome scaffold1572 Processing chromosome scaffold1572 INFO [2014-07-02 15:05:42,356] [Preprocessor.java:241] [main] Processing chromosome scaffold1573 Processing chromosome scaffold1573 INFO [2014-07-02 15:05:42,367] [Preprocessor.java:241] [main] Processing chromosome scaffold1574 Processing chromosome scaffold1574 INFO [2014-07-02 15:05:42,436] [Preprocessor.java:241] [main] Processing chromosome scaffold1575 Processing chromosome scaffold1575 INFO [2014-07-02 15:05:42,483] [Preprocessor.java:241] [main] Processing chromosome scaffold1576 Processing chromosome scaffold1576 INFO [2014-07-02 15:05:42,506] [Preprocessor.java:241] [main] Processing chromosome scaffold1577 Processing chromosome scaffold1577 INFO [2014-07-02 15:05:42,542] [Preprocessor.java:241] [main] Processing chromosome scaffold1578 Processing chromosome scaffold1578 INFO [2014-07-02 15:05:42,609] [Preprocessor.java:241] [main] Processing chromosome scaffold1579 Processing chromosome scaffold1579 INFO [2014-07-02 15:05:56,869] [Preprocessor.java:241] [main] Processing chromosome scaffold1580 Processing chromosome scaffold1580 INFO [2014-07-02 15:05:56,876] [Preprocessor.java:241] [main] Processing chromosome scaffold1581 Processing chromosome scaffold1581 INFO [2014-07-02 15:05:56,920] [Preprocessor.java:241] [main] Processing chromosome scaffold1582 Processing chromosome scaffold1582 INFO [2014-07-02 15:05:56,948] [Preprocessor.java:241] [main] Processing chromosome scaffold1583 Processing chromosome scaffold1583 INFO [2014-07-02 15:05:57,165] [Preprocessor.java:241] [main] Processing chromosome scaffold1584 Processing chromosome scaffold1584 INFO [2014-07-02 15:05:57,252] [Preprocessor.java:241] [main] Processing chromosome scaffold1585 Processing chromosome scaffold1585 INFO [2014-07-02 15:05:57,322] [Preprocessor.java:241] [main] Processing chromosome scaffold1586 Processing chromosome scaffold1586 INFO [2014-07-02 15:05:57,344] [Preprocessor.java:241] [main] Processing chromosome scaffold1587 Processing chromosome scaffold1587 INFO [2014-07-02 15:05:57,356] [Preprocessor.java:241] [main] Processing chromosome scaffold1588 Processing chromosome scaffold1588 INFO [2014-07-02 15:05:57,412] [Preprocessor.java:241] [main] Processing chromosome scaffold1589 Processing chromosome scaffold1589 INFO [2014-07-02 15:05:57,557] [Preprocessor.java:241] [main] Processing chromosome scaffold1590 Processing chromosome scaffold1590 INFO [2014-07-02 15:05:57,573] [Preprocessor.java:241] [main] Processing chromosome scaffold1591 Processing chromosome scaffold1591 INFO [2014-07-02 15:05:57,583] [Preprocessor.java:241] [main] Processing chromosome scaffold1592 Processing chromosome scaffold1592 INFO [2014-07-02 15:05:57,621] [Preprocessor.java:241] [main] Processing chromosome scaffold1593 Processing chromosome scaffold1593 INFO [2014-07-02 15:05:57,647] [Preprocessor.java:241] [main] Processing chromosome scaffold1595 Processing chromosome scaffold1595 INFO [2014-07-02 15:05:57,661] [Preprocessor.java:241] [main] Processing chromosome scaffold1596 Processing chromosome scaffold1596 INFO [2014-07-02 15:05:57,667] [Preprocessor.java:241] [main] Processing chromosome scaffold1597 Processing chromosome scaffold1597 INFO [2014-07-02 15:05:57,726] [Preprocessor.java:241] [main] Processing chromosome scaffold1598 Processing chromosome scaffold1598 INFO [2014-07-02 15:05:57,777] [Preprocessor.java:241] [main] Processing chromosome scaffold1599 Processing chromosome scaffold1599 INFO [2014-07-02 15:05:57,980] [Preprocessor.java:241] [main] Processing chromosome scaffold160 Processing chromosome scaffold160 10.0% INFO [2014-07-02 15:06:07,843] [Preprocessor.java:241] [main] Processing chromosome scaffold1600 Processing chromosome scaffold1600 INFO [2014-07-02 15:06:07,926] [Preprocessor.java:241] [main] Processing chromosome scaffold1601 Processing chromosome scaffold1601 INFO [2014-07-02 15:06:08,001] [Preprocessor.java:241] [main] Processing chromosome scaffold1603 Processing chromosome scaffold1603 INFO [2014-07-02 15:06:08,070] [Preprocessor.java:241] [main] Processing chromosome scaffold1604 Processing chromosome scaffold1604 INFO [2014-07-02 15:06:08,072] [Preprocessor.java:241] [main] Processing chromosome scaffold1605 Processing chromosome scaffold1605 INFO [2014-07-02 15:06:08,298] [Preprocessor.java:241] [main] Processing chromosome scaffold1606 Processing chromosome scaffold1606 INFO [2014-07-02 15:06:08,330] [Preprocessor.java:241] [main] Processing chromosome scaffold1607 Processing chromosome scaffold1607 INFO [2014-07-02 15:06:08,364] [Preprocessor.java:241] [main] Processing chromosome scaffold1608 Processing chromosome scaffold1608 INFO [2014-07-02 15:06:08,445] [Preprocessor.java:241] [main] Processing chromosome scaffold1609 Processing chromosome scaffold1609 INFO [2014-07-02 15:06:08,477] [Preprocessor.java:241] [main] Processing chromosome scaffold161 Processing chromosome scaffold161 INFO [2014-07-02 15:06:13,721] [Preprocessor.java:241] [main] Processing chromosome scaffold1610 Processing chromosome scaffold1610 INFO [2014-07-02 15:06:37,289] [Preprocessor.java:241] [main] Processing chromosome scaffold1611 Processing chromosome scaffold1611 INFO [2014-07-02 15:06:37,326] [Preprocessor.java:241] [main] Processing chromosome scaffold1612 Processing chromosome scaffold1612 INFO [2014-07-02 15:06:37,328] [Preprocessor.java:241] [main] Processing chromosome scaffold1613 Processing chromosome scaffold1613 INFO [2014-07-02 15:06:37,354] [Preprocessor.java:241] [main] Processing chromosome scaffold1614 Processing chromosome scaffold1614 INFO [2014-07-02 15:06:37,371] [Preprocessor.java:241] [main] Processing chromosome scaffold1615 Processing chromosome scaffold1615 INFO [2014-07-02 15:06:37,377] [Preprocessor.java:241] [main] Processing chromosome scaffold1616 Processing chromosome scaffold1616 INFO [2014-07-02 15:06:37,404] [Preprocessor.java:241] [main] Processing chromosome scaffold1617 Processing chromosome scaffold1617 INFO [2014-07-02 15:06:37,419] [Preprocessor.java:241] [main] Processing chromosome scaffold1618 Processing chromosome scaffold1618 INFO [2014-07-02 15:06:37,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1619 Processing chromosome scaffold1619 INFO [2014-07-02 15:06:37,444] [Preprocessor.java:241] [main] Processing chromosome scaffold162 Processing chromosome scaffold162 INFO [2014-07-02 15:06:37,507] [Preprocessor.java:241] [main] Processing chromosome scaffold1620 Processing chromosome scaffold1620 INFO [2014-07-02 15:06:37,538] [Preprocessor.java:241] [main] Processing chromosome scaffold1621 Processing chromosome scaffold1621 INFO [2014-07-02 15:06:37,549] [Preprocessor.java:241] [main] Processing chromosome scaffold1622 Processing chromosome scaffold1622 INFO [2014-07-02 15:06:37,553] [Preprocessor.java:241] [main] Processing chromosome scaffold1623 Processing chromosome scaffold1623 INFO [2014-07-02 15:06:37,573] [Preprocessor.java:241] [main] Processing chromosome scaffold1624 Processing chromosome scaffold1624 INFO [2014-07-02 15:06:37,579] [Preprocessor.java:241] [main] Processing chromosome scaffold1625 Processing chromosome scaffold1625 INFO [2014-07-02 15:06:37,613] [Preprocessor.java:241] [main] Processing chromosome scaffold1626 Processing chromosome scaffold1626 INFO [2014-07-02 15:06:37,629] [Preprocessor.java:241] [main] Processing chromosome scaffold1627 Processing chromosome scaffold1627 INFO [2014-07-02 15:06:37,658] [Preprocessor.java:241] [main] Processing chromosome scaffold1628 Processing chromosome scaffold1628 INFO [2014-07-02 15:06:37,666] [Preprocessor.java:241] [main] Processing chromosome scaffold1629 Processing chromosome scaffold1629 INFO [2014-07-02 15:06:37,678] [Preprocessor.java:241] [main] Processing chromosome scaffold163 Processing chromosome scaffold163 INFO [2014-07-02 15:06:37,798] [Preprocessor.java:241] [main] Processing chromosome scaffold1630 Processing chromosome scaffold1630 INFO [2014-07-02 15:06:37,863] [Preprocessor.java:241] [main] Processing chromosome scaffold1631 Processing chromosome scaffold1631 INFO [2014-07-02 15:06:37,902] [Preprocessor.java:241] [main] Processing chromosome scaffold1632 Processing chromosome scaffold1632 INFO [2014-07-02 15:06:37,938] [Preprocessor.java:241] [main] Processing chromosome scaffold1633 Processing chromosome scaffold1633 INFO [2014-07-02 15:06:37,964] [Preprocessor.java:241] [main] Processing chromosome scaffold1634 Processing chromosome scaffold1634 INFO [2014-07-02 15:06:38,003] [Preprocessor.java:241] [main] Processing chromosome scaffold1635 Processing chromosome scaffold1635 INFO [2014-07-02 15:06:38,023] [Preprocessor.java:241] [main] Processing chromosome scaffold1636 Processing chromosome scaffold1636 INFO [2014-07-02 15:06:38,057] [Preprocessor.java:241] [main] Processing chromosome scaffold1637 Processing chromosome scaffold1637 INFO [2014-07-02 15:06:38,104] [Preprocessor.java:241] [main] Processing chromosome scaffold1638 Processing chromosome scaffold1638 INFO [2014-07-02 15:06:38,127] [Preprocessor.java:241] [main] Processing chromosome scaffold1639 Processing chromosome scaffold1639 INFO [2014-07-02 15:06:38,144] [Preprocessor.java:241] [main] Processing chromosome scaffold164 Processing chromosome scaffold164 INFO [2014-07-02 15:06:38,270] [Preprocessor.java:241] [main] Processing chromosome scaffold1640 Processing chromosome scaffold1640 INFO [2014-07-02 15:06:38,275] [Preprocessor.java:241] [main] Processing chromosome scaffold1641 Processing chromosome scaffold1641 INFO [2014-07-02 15:06:38,319] [Preprocessor.java:241] [main] Processing chromosome scaffold1642 Processing chromosome scaffold1642 INFO [2014-07-02 15:06:38,337] [Preprocessor.java:241] [main] Processing chromosome scaffold1643 Processing chromosome scaffold1643 INFO [2014-07-02 15:06:45,055] [Preprocessor.java:241] [main] Processing chromosome scaffold1644 Processing chromosome scaffold1644 INFO [2014-07-02 15:06:45,089] [Preprocessor.java:241] [main] Processing chromosome scaffold1645 Processing chromosome scaffold1645 INFO [2014-07-02 15:06:45,138] [Preprocessor.java:241] [main] Processing chromosome scaffold1646 Processing chromosome scaffold1646 INFO [2014-07-02 15:06:45,166] [Preprocessor.java:241] [main] Processing chromosome scaffold1647 Processing chromosome scaffold1647 INFO [2014-07-02 15:06:45,187] [Preprocessor.java:241] [main] Processing chromosome scaffold1648 Processing chromosome scaffold1648 INFO [2014-07-02 15:06:45,195] [Preprocessor.java:241] [main] Processing chromosome scaffold165 Processing chromosome scaffold165 INFO [2014-07-02 15:06:45,279] [Preprocessor.java:241] [main] Processing chromosome scaffold1650 Processing chromosome scaffold1650 INFO [2014-07-02 15:06:45,386] [Preprocessor.java:241] [main] Processing chromosome scaffold1651 Processing chromosome scaffold1651 INFO [2014-07-02 15:06:45,429] [Preprocessor.java:241] [main] Processing chromosome scaffold1652 Processing chromosome scaffold1652 INFO [2014-07-02 15:06:45,518] [Preprocessor.java:241] [main] Processing chromosome scaffold1653 Processing chromosome scaffold1653 INFO [2014-07-02 15:06:45,546] [Preprocessor.java:241] [main] Processing chromosome scaffold1654 Processing chromosome scaffold1654 INFO [2014-07-02 15:06:45,569] [Preprocessor.java:241] [main] Processing chromosome scaffold1655 Processing chromosome scaffold1655 INFO [2014-07-02 15:06:45,578] [Preprocessor.java:241] [main] Processing chromosome scaffold1656 Processing chromosome scaffold1656 INFO [2014-07-02 15:06:45,601] [Preprocessor.java:241] [main] Processing chromosome scaffold1657 Processing chromosome scaffold1657 INFO [2014-07-02 15:06:45,615] [Preprocessor.java:241] [main] Processing chromosome scaffold1658 Processing chromosome scaffold1658 INFO [2014-07-02 15:06:45,640] [Preprocessor.java:241] [main] Processing chromosome scaffold1659 Processing chromosome scaffold1659 INFO [2014-07-02 15:06:45,648] [Preprocessor.java:241] [main] Processing chromosome scaffold1660 Processing chromosome scaffold1660 INFO [2014-07-02 15:06:45,670] [Preprocessor.java:241] [main] Processing chromosome scaffold1661 Processing chromosome scaffold1661 INFO [2014-07-02 15:06:45,685] [Preprocessor.java:241] [main] Processing chromosome scaffold1662 Processing chromosome scaffold1662 INFO [2014-07-02 15:06:45,751] [Preprocessor.java:241] [main] Processing chromosome scaffold1663 Processing chromosome scaffold1663 INFO [2014-07-02 15:06:45,789] [Preprocessor.java:241] [main] Processing chromosome scaffold1664 Processing chromosome scaffold1664 INFO [2014-07-02 15:06:45,816] [Preprocessor.java:241] [main] Processing chromosome scaffold1665 Processing chromosome scaffold1665 INFO [2014-07-02 15:06:45,907] [Preprocessor.java:241] [main] Processing chromosome scaffold1666 Processing chromosome scaffold1666 INFO [2014-07-02 15:06:45,913] [Preprocessor.java:241] [main] Processing chromosome scaffold1667 Processing chromosome scaffold1667 INFO [2014-07-02 15:06:45,976] [Preprocessor.java:241] [main] Processing chromosome scaffold1669 Processing chromosome scaffold1669 INFO [2014-07-02 15:06:45,997] [Preprocessor.java:241] [main] Processing chromosome scaffold167 Processing chromosome scaffold167 INFO [2014-07-02 15:06:46,007] [Preprocessor.java:241] [main] Processing chromosome scaffold1670 Processing chromosome scaffold1670 INFO [2014-07-02 15:06:46,139] [Preprocessor.java:241] [main] Processing chromosome scaffold1671 Processing chromosome scaffold1671 INFO [2014-07-02 15:06:46,239] [Preprocessor.java:241] [main] Processing chromosome scaffold1672 Processing chromosome scaffold1672 INFO [2014-07-02 15:06:46,269] [Preprocessor.java:241] [main] Processing chromosome scaffold1673 Processing chromosome scaffold1673 INFO [2014-07-02 15:06:49,170] [Preprocessor.java:241] [main] Processing chromosome scaffold1674 Processing chromosome scaffold1674 INFO [2014-07-02 15:06:49,182] [Preprocessor.java:241] [main] Processing chromosome scaffold1675 Processing chromosome scaffold1675 INFO [2014-07-02 15:06:49,192] [Preprocessor.java:241] [main] Processing chromosome scaffold1676 Processing chromosome scaffold1676 INFO [2014-07-02 15:06:49,201] [Preprocessor.java:241] [main] Processing chromosome scaffold1678 Processing chromosome scaffold1678 INFO [2014-07-02 15:06:49,250] [Preprocessor.java:241] [main] Processing chromosome scaffold1679 Processing chromosome scaffold1679 INFO [2014-07-02 15:06:49,257] [Preprocessor.java:241] [main] Processing chromosome scaffold168 Processing chromosome scaffold168 .INFO [2014-07-02 15:06:49,399] [Preprocessor.java:241] [main] Processing chromosome scaffold1680 Processing chromosome scaffold1680 INFO [2014-07-02 15:06:49,443] [Preprocessor.java:241] [main] Processing chromosome scaffold1682 Processing chromosome scaffold1682 INFO [2014-07-02 15:06:49,482] [Preprocessor.java:241] [main] Processing chromosome scaffold1683 Processing chromosome scaffold1683 INFO [2014-07-02 15:06:49,505] [Preprocessor.java:241] [main] Processing chromosome scaffold1684 Processing chromosome scaffold1684 INFO [2014-07-02 15:06:49,542] [Preprocessor.java:241] [main] Processing chromosome scaffold1685 Processing chromosome scaffold1685 INFO [2014-07-02 15:06:49,563] [Preprocessor.java:241] [main] Processing chromosome scaffold1686 Processing chromosome scaffold1686 INFO [2014-07-02 15:06:49,580] [Preprocessor.java:241] [main] Processing chromosome scaffold1687 Processing chromosome scaffold1687 INFO [2014-07-02 15:06:49,642] [Preprocessor.java:241] [main] Processing chromosome scaffold1688 Processing chromosome scaffold1688 INFO [2014-07-02 15:06:49,716] [Preprocessor.java:241] [main] Processing chromosome scaffold1689 Processing chromosome scaffold1689 INFO [2014-07-02 15:06:49,723] [Preprocessor.java:241] [main] Processing chromosome scaffold169 Processing chromosome scaffold169 INFO [2014-07-02 15:06:49,819] [Preprocessor.java:241] [main] Processing chromosome scaffold1690 Processing chromosome scaffold1690 INFO [2014-07-02 15:06:49,900] [Preprocessor.java:241] [main] Processing chromosome scaffold1691 Processing chromosome scaffold1691 INFO [2014-07-02 15:06:49,910] [Preprocessor.java:241] [main] Processing chromosome scaffold1692 Processing chromosome scaffold1692 INFO [2014-07-02 15:06:49,987] [Preprocessor.java:241] [main] Processing chromosome scaffold1693 Processing chromosome scaffold1693 INFO [2014-07-02 15:06:49,995] [Preprocessor.java:241] [main] Processing chromosome scaffold1694 Processing chromosome scaffold1694 INFO [2014-07-02 15:06:50,008] [Preprocessor.java:241] [main] Processing chromosome scaffold1695 Processing chromosome scaffold1695 INFO [2014-07-02 15:06:50,034] [Preprocessor.java:241] [main] Processing chromosome scaffold1696 Processing chromosome scaffold1696 INFO [2014-07-02 15:06:50,063] [Preprocessor.java:241] [main] Processing chromosome scaffold1697 Processing chromosome scaffold1697 INFO [2014-07-02 15:06:50,109] [Preprocessor.java:241] [main] Processing chromosome scaffold1698 Processing chromosome scaffold1698 INFO [2014-07-02 15:06:50,199] [Preprocessor.java:241] [main] Processing chromosome scaffold1699 Processing chromosome scaffold1699 INFO [2014-07-02 15:06:50,261] [Preprocessor.java:241] [main] Processing chromosome scaffold17 Processing chromosome scaffold17 INFO [2014-07-02 15:06:50,280] [Preprocessor.java:241] [main] Processing chromosome scaffold170 Processing chromosome scaffold170 INFO [2014-07-02 15:06:50,311] [Preprocessor.java:241] [main] Processing chromosome scaffold1700 Processing chromosome scaffold1700 INFO [2014-07-02 15:06:50,364] [Preprocessor.java:241] [main] Processing chromosome scaffold1701 Processing chromosome scaffold1701 INFO [2014-07-02 15:06:50,373] [Preprocessor.java:241] [main] Processing chromosome scaffold1702 Processing chromosome scaffold1702 INFO [2014-07-02 15:06:50,394] [Preprocessor.java:241] [main] Processing chromosome scaffold1703 Processing chromosome scaffold1703 INFO [2014-07-02 15:06:53,401] [Preprocessor.java:241] [main] Processing chromosome scaffold1704 Processing chromosome scaffold1704 INFO [2014-07-02 15:06:53,499] [Preprocessor.java:241] [main] Processing chromosome scaffold1705 Processing chromosome scaffold1705 INFO [2014-07-02 15:06:53,538] [Preprocessor.java:241] [main] Processing chromosome scaffold1706 Processing chromosome scaffold1706 INFO [2014-07-02 15:06:53,559] [Preprocessor.java:241] [main] Processing chromosome scaffold1707 Processing chromosome scaffold1707 INFO [2014-07-02 15:06:53,587] [Preprocessor.java:241] [main] Processing chromosome scaffold1708 Processing chromosome scaffold1708 INFO [2014-07-02 15:06:53,614] [Preprocessor.java:241] [main] Processing chromosome scaffold1709 Processing chromosome scaffold1709 INFO [2014-07-02 15:06:53,683] [Preprocessor.java:241] [main] Processing chromosome scaffold1710 Processing chromosome scaffold1710 INFO [2014-07-02 15:06:53,832] [Preprocessor.java:241] [main] Processing chromosome scaffold1711 Processing chromosome scaffold1711 INFO [2014-07-02 15:06:53,918] [Preprocessor.java:241] [main] Processing chromosome scaffold1712 Processing chromosome scaffold1712 INFO [2014-07-02 15:06:53,927] [Preprocessor.java:241] [main] Processing chromosome scaffold1713 Processing chromosome scaffold1713 INFO [2014-07-02 15:06:53,969] [Preprocessor.java:241] [main] Processing chromosome scaffold1714 Processing chromosome scaffold1714 INFO [2014-07-02 15:06:54,015] [Preprocessor.java:241] [main] Processing chromosome scaffold1715 Processing chromosome scaffold1715 INFO [2014-07-02 15:06:54,187] [Preprocessor.java:241] [main] Processing chromosome scaffold1716 Processing chromosome scaffold1716 INFO [2014-07-02 15:06:54,208] [Preprocessor.java:241] [main] Processing chromosome scaffold1717 Processing chromosome scaffold1717 INFO [2014-07-02 15:06:54,272] [Preprocessor.java:241] [main] Processing chromosome scaffold1718 Processing chromosome scaffold1718 INFO [2014-07-02 15:06:54,282] [Preprocessor.java:241] [main] Processing chromosome scaffold1719 Processing chromosome scaffold1719 INFO [2014-07-02 15:06:54,347] [Preprocessor.java:241] [main] Processing chromosome scaffold172 Processing chromosome scaffold172 INFO [2014-07-02 15:06:54,445] [Preprocessor.java:241] [main] Processing chromosome scaffold1720 Processing chromosome scaffold1720 INFO [2014-07-02 15:06:55,136] [Preprocessor.java:241] [main] Processing chromosome scaffold1721 Processing chromosome scaffold1721 INFO [2014-07-02 15:06:55,162] [Preprocessor.java:241] [main] Processing chromosome scaffold1722 Processing chromosome scaffold1722 INFO [2014-07-02 15:06:55,239] [Preprocessor.java:241] [main] Processing chromosome scaffold1723 Processing chromosome scaffold1723 INFO [2014-07-02 15:06:55,310] [Preprocessor.java:241] [main] Processing chromosome scaffold1724 Processing chromosome scaffold1724 INFO [2014-07-02 15:06:55,322] [Preprocessor.java:241] [main] Processing chromosome scaffold1725 Processing chromosome scaffold1725 INFO [2014-07-02 15:06:55,342] [Preprocessor.java:241] [main] Processing chromosome scaffold1726 Processing chromosome scaffold1726 INFO [2014-07-02 15:06:55,444] [Preprocessor.java:241] [main] Processing chromosome scaffold1727 Processing chromosome scaffold1727 INFO [2014-07-02 15:06:55,478] [Preprocessor.java:241] [main] Processing chromosome scaffold1728 Processing chromosome scaffold1728 INFO [2014-07-02 15:06:55,495] [Preprocessor.java:241] [main] Processing chromosome scaffold1729 Processing chromosome scaffold1729 INFO [2014-07-02 15:06:55,546] [Preprocessor.java:241] [main] Processing chromosome scaffold173 Processing chromosome scaffold173 INFO [2014-07-02 15:06:55,575] [Preprocessor.java:241] [main] Processing chromosome scaffold1730 Processing chromosome scaffold1730 INFO [2014-07-02 15:06:55,614] [Preprocessor.java:241] [main] Processing chromosome scaffold1731 Processing chromosome scaffold1731 INFO [2014-07-02 15:06:55,649] [Preprocessor.java:241] [main] Processing chromosome scaffold1732 Processing chromosome scaffold1732 INFO [2014-07-02 15:06:55,666] [Preprocessor.java:241] [main] Processing chromosome scaffold1733 Processing chromosome scaffold1733 INFO [2014-07-02 15:06:55,733] [Preprocessor.java:241] [main] Processing chromosome scaffold1734 Processing chromosome scaffold1734 INFO [2014-07-02 15:06:55,750] [Preprocessor.java:241] [main] Processing chromosome scaffold1735 Processing chromosome scaffold1735 INFO [2014-07-02 15:06:55,817] [Preprocessor.java:241] [main] Processing chromosome scaffold1736 Processing chromosome scaffold1736 INFO [2014-07-02 15:06:55,925] [Preprocessor.java:241] [main] Processing chromosome scaffold1737 Processing chromosome scaffold1737 INFO [2014-07-02 15:06:55,976] [Preprocessor.java:241] [main] Processing chromosome scaffold1738 Processing chromosome scaffold1738 INFO [2014-07-02 15:06:56,025] [Preprocessor.java:241] [main] Processing chromosome scaffold1739 Processing chromosome scaffold1739 INFO [2014-07-02 15:06:56,082] [Preprocessor.java:241] [main] Processing chromosome scaffold174 Processing chromosome scaffold174 INFO [2014-07-02 15:06:56,102] [Preprocessor.java:241] [main] Processing chromosome scaffold1740 Processing chromosome scaffold1740 INFO [2014-07-02 15:06:56,143] [Preprocessor.java:241] [main] Processing chromosome scaffold1741 Processing chromosome scaffold1741 INFO [2014-07-02 15:06:58,938] [Preprocessor.java:241] [main] Processing chromosome scaffold1742 Processing chromosome scaffold1742 INFO [2014-07-02 15:06:59,293] [Preprocessor.java:241] [main] Processing chromosome scaffold1743 Processing chromosome scaffold1743 INFO [2014-07-02 15:06:59,319] [Preprocessor.java:241] [main] Processing chromosome scaffold1745 Processing chromosome scaffold1745 INFO [2014-07-02 15:06:59,331] [Preprocessor.java:241] [main] Processing chromosome scaffold1746 Processing chromosome scaffold1746 .INFO [2014-07-02 15:06:59,390] [Preprocessor.java:241] [main] Processing chromosome scaffold1747 Processing chromosome scaffold1747 INFO [2014-07-02 15:06:59,411] [Preprocessor.java:241] [main] Processing chromosome scaffold1748 Processing chromosome scaffold1748 INFO [2014-07-02 15:06:59,432] [Preprocessor.java:241] [main] Processing chromosome scaffold1749 Processing chromosome scaffold1749 INFO [2014-07-02 15:06:59,461] [Preprocessor.java:241] [main] Processing chromosome scaffold175 Processing chromosome scaffold175 INFO [2014-07-02 15:06:59,565] [Preprocessor.java:241] [main] Processing chromosome scaffold1750 Processing chromosome scaffold1750 INFO [2014-07-02 15:06:59,711] [Preprocessor.java:241] [main] Processing chromosome scaffold1751 Processing chromosome scaffold1751 INFO [2014-07-02 15:06:59,767] [Preprocessor.java:241] [main] Processing chromosome scaffold1752 Processing chromosome scaffold1752 INFO [2014-07-02 15:06:59,789] [Preprocessor.java:241] [main] Processing chromosome scaffold1753 Processing chromosome scaffold1753 INFO [2014-07-02 15:06:59,824] [Preprocessor.java:241] [main] Processing chromosome scaffold1754 Processing chromosome scaffold1754 INFO [2014-07-02 15:06:59,969] [Preprocessor.java:241] [main] Processing chromosome scaffold1755 Processing chromosome scaffold1755 INFO [2014-07-02 15:06:59,980] [Preprocessor.java:241] [main] Processing chromosome scaffold1756 Processing chromosome scaffold1756 INFO [2014-07-02 15:06:59,995] [Preprocessor.java:241] [main] Processing chromosome scaffold1757 Processing chromosome scaffold1757 INFO [2014-07-02 15:07:00,038] [Preprocessor.java:241] [main] Processing chromosome scaffold1758 Processing chromosome scaffold1758 INFO [2014-07-02 15:07:00,083] [Preprocessor.java:241] [main] Processing chromosome scaffold1759 Processing chromosome scaffold1759 INFO [2014-07-02 15:07:00,135] [Preprocessor.java:241] [main] Processing chromosome scaffold17598 Processing chromosome scaffold17598 INFO [2014-07-02 15:07:00,180] [Preprocessor.java:241] [main] Processing chromosome scaffold1760 Processing chromosome scaffold1760 INFO [2014-07-02 15:07:00,211] [Preprocessor.java:241] [main] Processing chromosome scaffold1761 Processing chromosome scaffold1761 INFO [2014-07-02 15:07:00,229] [Preprocessor.java:241] [main] Processing chromosome scaffold1762 Processing chromosome scaffold1762 INFO [2014-07-02 15:07:00,237] [Preprocessor.java:241] [main] Processing chromosome scaffold1763 Processing chromosome scaffold1763 INFO [2014-07-02 15:07:00,383] [Preprocessor.java:241] [main] Processing chromosome scaffold1764 Processing chromosome scaffold1764 INFO [2014-07-02 15:07:00,393] [Preprocessor.java:241] [main] Processing chromosome scaffold1765 Processing chromosome scaffold1765 INFO [2014-07-02 15:07:00,400] [Preprocessor.java:241] [main] Processing chromosome scaffold1766 Processing chromosome scaffold1766 INFO [2014-07-02 15:07:03,200] [Preprocessor.java:241] [main] Processing chromosome scaffold1767 Processing chromosome scaffold1767 INFO [2014-07-02 15:07:03,268] [Preprocessor.java:241] [main] Processing chromosome scaffold1768 Processing chromosome scaffold1768 INFO [2014-07-02 15:07:03,289] [Preprocessor.java:241] [main] Processing chromosome scaffold1769 Processing chromosome scaffold1769 INFO [2014-07-02 15:07:03,650] [Preprocessor.java:241] [main] Processing chromosome scaffold177 Processing chromosome scaffold177 INFO [2014-07-02 15:07:03,686] [Preprocessor.java:241] [main] Processing chromosome scaffold1770 Processing chromosome scaffold1770 INFO [2014-07-02 15:07:03,715] [Preprocessor.java:241] [main] Processing chromosome scaffold1771 Processing chromosome scaffold1771 INFO [2014-07-02 15:07:03,766] [Preprocessor.java:241] [main] Processing chromosome scaffold1772 Processing chromosome scaffold1772 INFO [2014-07-02 15:07:03,797] [Preprocessor.java:241] [main] Processing chromosome scaffold1773 Processing chromosome scaffold1773 INFO [2014-07-02 15:07:03,828] [Preprocessor.java:241] [main] Processing chromosome scaffold1774 Processing chromosome scaffold1774 INFO [2014-07-02 15:07:03,876] [Preprocessor.java:241] [main] Processing chromosome scaffold1775 Processing chromosome scaffold1775 INFO [2014-07-02 15:07:03,886] [Preprocessor.java:241] [main] Processing chromosome scaffold1776 Processing chromosome scaffold1776 INFO [2014-07-02 15:07:03,889] [Preprocessor.java:241] [main] Processing chromosome scaffold1777 Processing chromosome scaffold1777 INFO [2014-07-02 15:07:03,921] [Preprocessor.java:241] [main] Processing chromosome scaffold1778 Processing chromosome scaffold1778 INFO [2014-07-02 15:07:03,934] [Preprocessor.java:241] [main] Processing chromosome scaffold1779 Processing chromosome scaffold1779 INFO [2014-07-02 15:07:03,963] [Preprocessor.java:241] [main] Processing chromosome scaffold178 Processing chromosome scaffold178 INFO [2014-07-02 15:07:03,978] [Preprocessor.java:241] [main] Processing chromosome scaffold1780 Processing chromosome scaffold1780 INFO [2014-07-02 15:07:04,089] [Preprocessor.java:241] [main] Processing chromosome scaffold1781 Processing chromosome scaffold1781 INFO [2014-07-02 15:07:04,130] [Preprocessor.java:241] [main] Processing chromosome scaffold1782 Processing chromosome scaffold1782 INFO [2014-07-02 15:07:05,005] [Preprocessor.java:241] [main] Processing chromosome scaffold1783 Processing chromosome scaffold1783 INFO [2014-07-02 15:07:05,046] [Preprocessor.java:241] [main] Processing chromosome scaffold1784 Processing chromosome scaffold1784 INFO [2014-07-02 15:07:05,056] [Preprocessor.java:241] [main] Processing chromosome scaffold1785 Processing chromosome scaffold1785 INFO [2014-07-02 15:07:05,260] [Preprocessor.java:241] [main] Processing chromosome scaffold1786 Processing chromosome scaffold1786 INFO [2014-07-02 15:07:05,320] [Preprocessor.java:241] [main] Processing chromosome scaffold1787 Processing chromosome scaffold1787 INFO [2014-07-02 15:07:05,341] [Preprocessor.java:241] [main] Processing chromosome scaffold1788 Processing chromosome scaffold1788 INFO [2014-07-02 15:07:11,724] [Preprocessor.java:241] [main] Processing chromosome scaffold1789 Processing chromosome scaffold1789 INFO [2014-07-02 15:07:11,735] [Preprocessor.java:241] [main] Processing chromosome scaffold179 Processing chromosome scaffold179 INFO [2014-07-02 15:07:11,762] [Preprocessor.java:241] [main] Processing chromosome scaffold1790 Processing chromosome scaffold1790 INFO [2014-07-02 15:07:11,791] [Preprocessor.java:241] [main] Processing chromosome scaffold1791 Processing chromosome scaffold1791 INFO [2014-07-02 15:07:11,861] [Preprocessor.java:241] [main] Processing chromosome scaffold1792 Processing chromosome scaffold1792 INFO [2014-07-02 15:07:11,945] [Preprocessor.java:241] [main] Processing chromosome scaffold1793 Processing chromosome scaffold1793 INFO [2014-07-02 15:07:11,956] [Preprocessor.java:241] [main] Processing chromosome scaffold1794 Processing chromosome scaffold1794 INFO [2014-07-02 15:07:12,086] [Preprocessor.java:241] [main] Processing chromosome scaffold17942 Processing chromosome scaffold17942 INFO [2014-07-02 15:07:12,095] [Preprocessor.java:241] [main] Processing chromosome scaffold1795 Processing chromosome scaffold1795 INFO [2014-07-02 15:07:12,148] [Preprocessor.java:241] [main] Processing chromosome scaffold1796 Processing chromosome scaffold1796 INFO [2014-07-02 15:07:12,184] [Preprocessor.java:241] [main] Processing chromosome scaffold1797 Processing chromosome scaffold1797 INFO [2014-07-02 15:07:12,219] [Preprocessor.java:241] [main] Processing chromosome scaffold1798 Processing chromosome scaffold1798 INFO [2014-07-02 15:07:12,243] [Preprocessor.java:241] [main] Processing chromosome scaffold1799 Processing chromosome scaffold1799 INFO [2014-07-02 15:07:12,286] [Preprocessor.java:241] [main] Processing chromosome scaffold18 Processing chromosome scaffold18 INFO [2014-07-02 15:07:12,298] [Preprocessor.java:241] [main] Processing chromosome scaffold180 Processing chromosome scaffold180 INFO [2014-07-02 15:07:12,327] [Preprocessor.java:241] [main] Processing chromosome scaffold1800 Processing chromosome scaffold1800 INFO [2014-07-02 15:07:12,472] [Preprocessor.java:241] [main] Processing chromosome scaffold1801 Processing chromosome scaffold1801 INFO [2014-07-02 15:07:12,501] [Preprocessor.java:241] [main] Processing chromosome scaffold1802 Processing chromosome scaffold1802 INFO [2014-07-02 15:07:12,530] [Preprocessor.java:241] [main] Processing chromosome scaffold1803 Processing chromosome scaffold1803 INFO [2014-07-02 15:07:12,634] [Preprocessor.java:241] [main] Processing chromosome scaffold1804 Processing chromosome scaffold1804 INFO [2014-07-02 15:07:13,108] [Preprocessor.java:241] [main] Processing chromosome scaffold1805 Processing chromosome scaffold1805 INFO [2014-07-02 15:07:13,153] [Preprocessor.java:241] [main] Processing chromosome scaffold18052 Processing chromosome scaffold18052 INFO [2014-07-02 15:07:13,170] [Preprocessor.java:241] [main] Processing chromosome scaffold1806 Processing chromosome scaffold1806 INFO [2014-07-02 15:07:13,219] [Preprocessor.java:241] [main] Processing chromosome scaffold1807 Processing chromosome scaffold1807 INFO [2014-07-02 15:07:13,238] [Preprocessor.java:241] [main] Processing chromosome scaffold1808 Processing chromosome scaffold1808 INFO [2014-07-02 15:07:13,270] [Preprocessor.java:241] [main] Processing chromosome scaffold1809 Processing chromosome scaffold1809 INFO [2014-07-02 15:07:13,286] [Preprocessor.java:241] [main] Processing chromosome scaffold181 Processing chromosome scaffold181 INFO [2014-07-02 15:07:13,302] [Preprocessor.java:241] [main] Processing chromosome scaffold1810 Processing chromosome scaffold1810 .INFO [2014-07-02 15:07:13,357] [Preprocessor.java:241] [main] Processing chromosome scaffold1811 Processing chromosome scaffold1811 INFO [2014-07-02 15:07:13,371] [Preprocessor.java:241] [main] Processing chromosome scaffold1812 Processing chromosome scaffold1812 INFO [2014-07-02 15:07:13,390] [Preprocessor.java:241] [main] Processing chromosome scaffold1813 Processing chromosome scaffold1813 INFO [2014-07-02 15:07:13,441] [Preprocessor.java:241] [main] Processing chromosome scaffold1814 Processing chromosome scaffold1814 INFO [2014-07-02 15:07:13,456] [Preprocessor.java:241] [main] Processing chromosome scaffold1815 Processing chromosome scaffold1815 INFO [2014-07-02 15:07:13,512] [Preprocessor.java:241] [main] Processing chromosome scaffold1816 Processing chromosome scaffold1816 INFO [2014-07-02 15:07:13,567] [Preprocessor.java:241] [main] Processing chromosome scaffold1817 Processing chromosome scaffold1817 INFO [2014-07-02 15:07:13,602] [Preprocessor.java:241] [main] Processing chromosome scaffold1818 Processing chromosome scaffold1818 INFO [2014-07-02 15:07:13,652] [Preprocessor.java:241] [main] Processing chromosome scaffold1819 Processing chromosome scaffold1819 INFO [2014-07-02 15:07:13,697] [Preprocessor.java:241] [main] Processing chromosome scaffold182 Processing chromosome scaffold182 INFO [2014-07-02 15:07:13,729] [Preprocessor.java:241] [main] Processing chromosome scaffold1820 Processing chromosome scaffold1820 INFO [2014-07-02 15:07:13,744] [Preprocessor.java:241] [main] Processing chromosome scaffold18202 Processing chromosome scaffold18202 INFO [2014-07-02 15:07:13,814] [Preprocessor.java:241] [main] Processing chromosome scaffold1821 Processing chromosome scaffold1821 INFO [2014-07-02 15:07:13,869] [Preprocessor.java:241] [main] Processing chromosome scaffold1822 Processing chromosome scaffold1822 INFO [2014-07-02 15:07:13,981] [Preprocessor.java:241] [main] Processing chromosome scaffold18220 Processing chromosome scaffold18220 INFO [2014-07-02 15:07:14,023] [Preprocessor.java:241] [main] Processing chromosome scaffold1823 Processing chromosome scaffold1823 INFO [2014-07-02 15:07:14,045] [Preprocessor.java:241] [main] Processing chromosome scaffold1824 Processing chromosome scaffold1824 INFO [2014-07-02 15:07:14,062] [Preprocessor.java:241] [main] Processing chromosome scaffold1825 Processing chromosome scaffold1825 INFO [2014-07-02 15:07:14,100] [Preprocessor.java:241] [main] Processing chromosome scaffold1826 Processing chromosome scaffold1826 INFO [2014-07-02 15:07:14,120] [Preprocessor.java:241] [main] Processing chromosome scaffold1827 Processing chromosome scaffold1827 INFO [2014-07-02 15:07:14,182] [Preprocessor.java:241] [main] Processing chromosome scaffold1828 Processing chromosome scaffold1828 INFO [2014-07-02 15:07:14,211] [Preprocessor.java:241] [main] Processing chromosome scaffold1829 Processing chromosome scaffold1829 INFO [2014-07-02 15:07:14,264] [Preprocessor.java:241] [main] Processing chromosome scaffold1830 Processing chromosome scaffold1830 INFO [2014-07-02 15:07:14,269] [Preprocessor.java:241] [main] Processing chromosome scaffold1831 Processing chromosome scaffold1831 INFO [2014-07-02 15:07:14,283] [Preprocessor.java:241] [main] Processing chromosome scaffold1832 Processing chromosome scaffold1832 INFO [2014-07-02 15:07:14,364] [Preprocessor.java:241] [main] Processing chromosome scaffold1833 Processing chromosome scaffold1833 INFO [2014-07-02 15:07:14,388] [Preprocessor.java:241] [main] Processing chromosome scaffold1834 Processing chromosome scaffold1834 INFO [2014-07-02 15:07:17,348] [Preprocessor.java:241] [main] Processing chromosome scaffold1835 Processing chromosome scaffold1835 INFO [2014-07-02 15:07:17,453] [Preprocessor.java:241] [main] Processing chromosome scaffold1836 Processing chromosome scaffold1836 INFO [2014-07-02 15:07:17,610] [Preprocessor.java:241] [main] Processing chromosome scaffold1837 Processing chromosome scaffold1837 INFO [2014-07-02 15:07:17,634] [Preprocessor.java:241] [main] Processing chromosome scaffold1838 Processing chromosome scaffold1838 INFO [2014-07-02 15:07:17,753] [Preprocessor.java:241] [main] Processing chromosome scaffold1839 Processing chromosome scaffold1839 INFO [2014-07-02 15:07:17,805] [Preprocessor.java:241] [main] Processing chromosome scaffold184 Processing chromosome scaffold184 INFO [2014-07-02 15:07:17,861] [Preprocessor.java:241] [main] Processing chromosome scaffold1840 Processing chromosome scaffold1840 INFO [2014-07-02 15:07:17,890] [Preprocessor.java:241] [main] Processing chromosome scaffold1841 Processing chromosome scaffold1841 INFO [2014-07-02 15:07:17,982] [Preprocessor.java:241] [main] Processing chromosome scaffold1842 Processing chromosome scaffold1842 INFO [2014-07-02 15:07:18,025] [Preprocessor.java:241] [main] Processing chromosome scaffold1843 Processing chromosome scaffold1843 INFO [2014-07-02 15:07:18,100] [Preprocessor.java:241] [main] Processing chromosome scaffold1844 Processing chromosome scaffold1844 INFO [2014-07-02 15:07:18,748] [Preprocessor.java:241] [main] Processing chromosome scaffold1845 Processing chromosome scaffold1845 INFO [2014-07-02 15:07:18,800] [Preprocessor.java:241] [main] Processing chromosome scaffold1846 Processing chromosome scaffold1846 INFO [2014-07-02 15:07:18,843] [Preprocessor.java:241] [main] Processing chromosome scaffold18460 Processing chromosome scaffold18460 INFO [2014-07-02 15:07:18,859] [Preprocessor.java:241] [main] Processing chromosome scaffold1847 Processing chromosome scaffold1847 INFO [2014-07-02 15:07:18,894] [Preprocessor.java:241] [main] Processing chromosome scaffold1848 Processing chromosome scaffold1848 INFO [2014-07-02 15:07:18,950] [Preprocessor.java:241] [main] Processing chromosome scaffold1849 Processing chromosome scaffold1849 INFO [2014-07-02 15:07:19,050] [Preprocessor.java:241] [main] Processing chromosome scaffold185 Processing chromosome scaffold185 INFO [2014-07-02 15:07:19,056] [Preprocessor.java:241] [main] Processing chromosome scaffold1850 Processing chromosome scaffold1850 INFO [2014-07-02 15:07:19,099] [Preprocessor.java:241] [main] Processing chromosome scaffold1851 Processing chromosome scaffold1851 INFO [2014-07-02 15:07:19,122] [Preprocessor.java:241] [main] Processing chromosome scaffold1852 Processing chromosome scaffold1852 INFO [2014-07-02 15:07:19,151] [Preprocessor.java:241] [main] Processing chromosome scaffold1853 Processing chromosome scaffold1853 INFO [2014-07-02 15:07:19,159] [Preprocessor.java:241] [main] Processing chromosome scaffold1854 Processing chromosome scaffold1854 INFO [2014-07-02 15:07:19,183] [Preprocessor.java:241] [main] Processing chromosome scaffold1855 Processing chromosome scaffold1855 INFO [2014-07-02 15:07:19,273] [Preprocessor.java:241] [main] Processing chromosome scaffold1856 Processing chromosome scaffold1856 INFO [2014-07-02 15:07:19,326] [Preprocessor.java:241] [main] Processing chromosome scaffold1857 Processing chromosome scaffold1857 INFO [2014-07-02 15:07:19,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1858 Processing chromosome scaffold1858 INFO [2014-07-02 15:07:19,512] [Preprocessor.java:241] [main] Processing chromosome scaffold1859 Processing chromosome scaffold1859 INFO [2014-07-02 15:07:19,588] [Preprocessor.java:241] [main] Processing chromosome scaffold186 Processing chromosome scaffold186 INFO [2014-07-02 15:07:19,678] [Preprocessor.java:241] [main] Processing chromosome scaffold1860 Processing chromosome scaffold1860 INFO [2014-07-02 15:07:19,785] [Preprocessor.java:241] [main] Processing chromosome scaffold1861 Processing chromosome scaffold1861 INFO [2014-07-02 15:07:19,810] [Preprocessor.java:241] [main] Processing chromosome scaffold1862 Processing chromosome scaffold1862 INFO [2014-07-02 15:07:22,784] [Preprocessor.java:241] [main] Processing chromosome scaffold1863 Processing chromosome scaffold1863 .INFO [2014-07-02 15:07:22,848] [Preprocessor.java:241] [main] Processing chromosome scaffold1864 Processing chromosome scaffold1864 INFO [2014-07-02 15:07:22,885] [Preprocessor.java:241] [main] Processing chromosome scaffold1865 Processing chromosome scaffold1865 INFO [2014-07-02 15:07:22,943] [Preprocessor.java:241] [main] Processing chromosome scaffold1866 Processing chromosome scaffold1866 INFO [2014-07-02 15:07:23,672] [Preprocessor.java:241] [main] Processing chromosome scaffold1867 Processing chromosome scaffold1867 INFO [2014-07-02 15:07:23,717] [Preprocessor.java:241] [main] Processing chromosome scaffold1868 Processing chromosome scaffold1868 INFO [2014-07-02 15:07:23,765] [Preprocessor.java:241] [main] Processing chromosome scaffold1869 Processing chromosome scaffold1869 INFO [2014-07-02 15:07:23,847] [Preprocessor.java:241] [main] Processing chromosome scaffold187 Processing chromosome scaffold187 INFO [2014-07-02 15:07:23,862] [Preprocessor.java:241] [main] Processing chromosome scaffold1870 Processing chromosome scaffold1870 INFO [2014-07-02 15:07:23,954] [Preprocessor.java:241] [main] Processing chromosome scaffold1871 Processing chromosome scaffold1871 INFO [2014-07-02 15:07:24,017] [Preprocessor.java:241] [main] Processing chromosome scaffold18716 Processing chromosome scaffold18716 INFO [2014-07-02 15:07:24,050] [Preprocessor.java:241] [main] Processing chromosome scaffold1872 Processing chromosome scaffold1872 INFO [2014-07-02 15:07:24,116] [Preprocessor.java:241] [main] Processing chromosome scaffold18720 Processing chromosome scaffold18720 INFO [2014-07-02 15:07:24,143] [Preprocessor.java:241] [main] Processing chromosome scaffold1873 Processing chromosome scaffold1873 INFO [2014-07-02 15:07:24,186] [Preprocessor.java:241] [main] Processing chromosome scaffold1874 Processing chromosome scaffold1874 INFO [2014-07-02 15:07:24,231] [Preprocessor.java:241] [main] Processing chromosome scaffold1875 Processing chromosome scaffold1875 INFO [2014-07-02 15:07:24,992] [Preprocessor.java:241] [main] Processing chromosome scaffold1876 Processing chromosome scaffold1876 INFO [2014-07-02 15:07:25,030] [Preprocessor.java:241] [main] Processing chromosome scaffold1877 Processing chromosome scaffold1877 INFO [2014-07-02 15:07:25,603] [Preprocessor.java:241] [main] Processing chromosome scaffold18778 Processing chromosome scaffold18778 INFO [2014-07-02 15:07:25,614] [Preprocessor.java:241] [main] Processing chromosome scaffold1878 Processing chromosome scaffold1878 INFO [2014-07-02 15:07:25,646] [Preprocessor.java:241] [main] Processing chromosome scaffold18786 Processing chromosome scaffold18786 INFO [2014-07-02 15:07:25,659] [Preprocessor.java:241] [main] Processing chromosome scaffold1879 Processing chromosome scaffold1879 INFO [2014-07-02 15:07:25,762] [Preprocessor.java:241] [main] Processing chromosome scaffold188 Processing chromosome scaffold188 INFO [2014-07-02 15:07:25,797] [Preprocessor.java:241] [main] Processing chromosome scaffold1880 Processing chromosome scaffold1880 INFO [2014-07-02 15:07:29,110] [Preprocessor.java:241] [main] Processing chromosome scaffold1881 Processing chromosome scaffold1881 INFO [2014-07-02 15:07:29,160] [Preprocessor.java:241] [main] Processing chromosome scaffold1882 Processing chromosome scaffold1882 INFO [2014-07-02 15:07:29,208] [Preprocessor.java:241] [main] Processing chromosome scaffold1883 Processing chromosome scaffold1883 INFO [2014-07-02 15:07:29,264] [Preprocessor.java:241] [main] Processing chromosome scaffold18830 Processing chromosome scaffold18830 INFO [2014-07-02 15:07:29,324] [Preprocessor.java:241] [main] Processing chromosome scaffold1884 Processing chromosome scaffold1884 INFO [2014-07-02 15:07:29,460] [Preprocessor.java:241] [main] Processing chromosome scaffold1885 Processing chromosome scaffold1885 INFO [2014-07-02 15:07:29,500] [Preprocessor.java:241] [main] Processing chromosome scaffold1886 Processing chromosome scaffold1886 INFO [2014-07-02 15:07:29,535] [Preprocessor.java:241] [main] Processing chromosome scaffold1887 Processing chromosome scaffold1887 INFO [2014-07-02 15:07:29,561] [Preprocessor.java:241] [main] Processing chromosome scaffold18872 Processing chromosome scaffold18872 INFO [2014-07-02 15:07:29,569] [Preprocessor.java:241] [main] Processing chromosome scaffold1888 Processing chromosome scaffold1888 INFO [2014-07-02 15:07:29,627] [Preprocessor.java:241] [main] Processing chromosome scaffold1889 Processing chromosome scaffold1889 INFO [2014-07-02 15:07:29,708] [Preprocessor.java:241] [main] Processing chromosome scaffold189 Processing chromosome scaffold189 INFO [2014-07-02 15:07:29,791] [Preprocessor.java:241] [main] Processing chromosome scaffold1890 Processing chromosome scaffold1890 INFO [2014-07-02 15:07:29,842] [Preprocessor.java:241] [main] Processing chromosome scaffold1891 Processing chromosome scaffold1891 INFO [2014-07-02 15:07:29,890] [Preprocessor.java:241] [main] Processing chromosome scaffold1892 Processing chromosome scaffold1892 INFO [2014-07-02 15:07:30,630] [Preprocessor.java:241] [main] Processing chromosome scaffold1893 Processing chromosome scaffold1893 INFO [2014-07-02 15:07:30,735] [Preprocessor.java:241] [main] Processing chromosome scaffold1894 Processing chromosome scaffold1894 INFO [2014-07-02 15:07:30,790] [Preprocessor.java:241] [main] Processing chromosome scaffold1895 Processing chromosome scaffold1895 INFO [2014-07-02 15:07:32,302] [Preprocessor.java:241] [main] Processing chromosome scaffold1896 Processing chromosome scaffold1896 INFO [2014-07-02 15:07:32,458] [Preprocessor.java:241] [main] Processing chromosome scaffold1897 Processing chromosome scaffold1897 INFO [2014-07-02 15:07:32,569] [Preprocessor.java:241] [main] Processing chromosome scaffold1898 Processing chromosome scaffold1898 INFO [2014-07-02 15:07:32,664] [Preprocessor.java:241] [main] Processing chromosome scaffold1899 Processing chromosome scaffold1899 INFO [2014-07-02 15:07:32,743] [Preprocessor.java:241] [main] Processing chromosome scaffold19 Processing chromosome scaffold19 INFO [2014-07-02 15:07:32,801] [Preprocessor.java:241] [main] Processing chromosome scaffold190 Processing chromosome scaffold190 INFO [2014-07-02 15:07:32,875] [Preprocessor.java:241] [main] Processing chromosome scaffold1900 Processing chromosome scaffold1900 INFO [2014-07-02 15:07:33,006] [Preprocessor.java:241] [main] Processing chromosome scaffold1901 Processing chromosome scaffold1901 INFO [2014-07-02 15:07:35,879] [Preprocessor.java:241] [main] Processing chromosome scaffold19046 Processing chromosome scaffold19046 INFO [2014-07-02 15:07:35,922] [Preprocessor.java:241] [main] Processing chromosome scaffold191 Processing chromosome scaffold191 INFO [2014-07-02 15:07:35,967] [Preprocessor.java:241] [main] Processing chromosome scaffold192 Processing chromosome scaffold192 .INFO [2014-07-02 15:07:36,793] [Preprocessor.java:241] [main] Processing chromosome scaffold19274 Processing chromosome scaffold19274 INFO [2014-07-02 15:07:36,817] [Preprocessor.java:241] [main] Processing chromosome scaffold19292 Processing chromosome scaffold19292 INFO [2014-07-02 15:07:36,837] [Preprocessor.java:241] [main] Processing chromosome scaffold193 Processing chromosome scaffold193 INFO [2014-07-02 15:07:36,959] [Preprocessor.java:241] [main] Processing chromosome scaffold194 Processing chromosome scaffold194 INFO [2014-07-02 15:07:37,020] [Preprocessor.java:241] [main] Processing chromosome scaffold19402 Processing chromosome scaffold19402 INFO [2014-07-02 15:07:37,028] [Preprocessor.java:241] [main] Processing chromosome scaffold19422 Processing chromosome scaffold19422 INFO [2014-07-02 15:07:37,045] [Preprocessor.java:241] [main] Processing chromosome scaffold19568 Processing chromosome scaffold19568 INFO [2014-07-02 15:07:37,063] [Preprocessor.java:241] [main] Processing chromosome scaffold19574 Processing chromosome scaffold19574 INFO [2014-07-02 15:07:37,073] [Preprocessor.java:241] [main] Processing chromosome scaffold196 Processing chromosome scaffold196 INFO [2014-07-02 15:07:37,123] [Preprocessor.java:241] [main] Processing chromosome scaffold19618 Processing chromosome scaffold19618 INFO [2014-07-02 15:07:37,141] [Preprocessor.java:241] [main] Processing chromosome scaffold19712 Processing chromosome scaffold19712 INFO [2014-07-02 15:07:37,186] [Preprocessor.java:241] [main] Processing chromosome scaffold198 Processing chromosome scaffold198 INFO [2014-07-02 15:07:37,402] [Preprocessor.java:241] [main] Processing chromosome scaffold19806 Processing chromosome scaffold19806 INFO [2014-07-02 15:07:37,414] [Preprocessor.java:241] [main] Processing chromosome scaffold19922 Processing chromosome scaffold19922 INFO [2014-07-02 15:07:37,441] [Preprocessor.java:241] [main] Processing chromosome scaffold2 Processing chromosome scaffold2 INFO [2014-07-02 15:07:37,497] [Preprocessor.java:241] [main] Processing chromosome scaffold20 Processing chromosome scaffold20 INFO [2014-07-02 15:07:38,296] [Preprocessor.java:241] [main] Processing chromosome scaffold200 Processing chromosome scaffold200 INFO [2014-07-02 15:07:41,074] [Preprocessor.java:241] [main] Processing chromosome scaffold201 Processing chromosome scaffold201 INFO [2014-07-02 15:07:41,132] [Preprocessor.java:241] [main] Processing chromosome scaffold20100 Processing chromosome scaffold20100 INFO [2014-07-02 15:07:41,143] [Preprocessor.java:241] [main] Processing chromosome scaffold203 Processing chromosome scaffold203 INFO [2014-07-02 15:07:41,239] [Preprocessor.java:241] [main] Processing chromosome scaffold20304 Processing chromosome scaffold20304 INFO [2014-07-02 15:07:41,248] [Preprocessor.java:241] [main] Processing chromosome scaffold20312 Processing chromosome scaffold20312 INFO [2014-07-02 15:07:41,257] [Preprocessor.java:241] [main] Processing chromosome scaffold20376 Processing chromosome scaffold20376 INFO [2014-07-02 15:07:41,270] [Preprocessor.java:241] [main] Processing chromosome scaffold204 Processing chromosome scaffold204 INFO [2014-07-02 15:07:41,425] [Preprocessor.java:241] [main] Processing chromosome scaffold205 Processing chromosome scaffold205 INFO [2014-07-02 15:07:41,441] [Preprocessor.java:241] [main] Processing chromosome scaffold20542 Processing chromosome scaffold20542 INFO [2014-07-02 15:07:41,451] [Preprocessor.java:241] [main] Processing chromosome scaffold206 Processing chromosome scaffold206 INFO [2014-07-02 15:07:41,509] [Preprocessor.java:241] [main] Processing chromosome scaffold20602 Processing chromosome scaffold20602 INFO [2014-07-02 15:07:41,553] [Preprocessor.java:241] [main] Processing chromosome scaffold207 Processing chromosome scaffold207 INFO [2014-07-02 15:07:41,573] [Preprocessor.java:241] [main] Processing chromosome scaffold20744 Processing chromosome scaffold20744 INFO [2014-07-02 15:07:41,583] [Preprocessor.java:241] [main] Processing chromosome scaffold20758 Processing chromosome scaffold20758 INFO [2014-07-02 15:07:41,601] [Preprocessor.java:241] [main] Processing chromosome scaffold20772 Processing chromosome scaffold20772 INFO [2014-07-02 15:07:41,608] [Preprocessor.java:241] [main] Processing chromosome scaffold208 Processing chromosome scaffold208 INFO [2014-07-02 15:07:41,650] [Preprocessor.java:241] [main] Processing chromosome scaffold20810 Processing chromosome scaffold20810 INFO [2014-07-02 15:07:41,665] [Preprocessor.java:241] [main] Processing chromosome scaffold20836 Processing chromosome scaffold20836 INFO [2014-07-02 15:07:41,716] [Preprocessor.java:241] [main] Processing chromosome scaffold20868 Processing chromosome scaffold20868 INFO [2014-07-02 15:07:41,730] [Preprocessor.java:241] [main] Processing chromosome scaffold209 Processing chromosome scaffold209 INFO [2014-07-02 15:07:42,497] [Preprocessor.java:241] [main] Processing chromosome scaffold21 Processing chromosome scaffold21 INFO [2014-07-02 15:07:42,507] [Preprocessor.java:241] [main] Processing chromosome scaffold210 Processing chromosome scaffold210 INFO [2014-07-02 15:07:42,620] [Preprocessor.java:241] [main] Processing chromosome scaffold21010 Processing chromosome scaffold21010 INFO [2014-07-02 15:07:42,633] [Preprocessor.java:241] [main] Processing chromosome scaffold21056 Processing chromosome scaffold21056 INFO [2014-07-02 15:07:42,649] [Preprocessor.java:241] [main] Processing chromosome scaffold21086 Processing chromosome scaffold21086 INFO [2014-07-02 15:07:42,693] [Preprocessor.java:241] [main] Processing chromosome scaffold21088 Processing chromosome scaffold21088 INFO [2014-07-02 15:07:42,720] [Preprocessor.java:241] [main] Processing chromosome scaffold211 Processing chromosome scaffold211 INFO [2014-07-02 15:07:45,617] [Preprocessor.java:241] [main] Processing chromosome scaffold21166 Processing chromosome scaffold21166 INFO [2014-07-02 15:07:45,629] [Preprocessor.java:241] [main] Processing chromosome scaffold212 Processing chromosome scaffold212 INFO [2014-07-02 15:07:45,647] [Preprocessor.java:241] [main] Processing chromosome scaffold21290 Processing chromosome scaffold21290 INFO [2014-07-02 15:07:45,683] [Preprocessor.java:241] [main] Processing chromosome scaffold213 Processing chromosome scaffold213 INFO [2014-07-02 15:07:45,708] [Preprocessor.java:241] [main] Processing chromosome scaffold21434 Processing chromosome scaffold21434 INFO [2014-07-02 15:07:45,712] [Preprocessor.java:241] [main] Processing chromosome scaffold215 Processing chromosome scaffold215 INFO [2014-07-02 15:07:45,751] [Preprocessor.java:241] [main] Processing chromosome scaffold21506 Processing chromosome scaffold21506 INFO [2014-07-02 15:07:45,788] [Preprocessor.java:241] [main] Processing chromosome scaffold21534 Processing chromosome scaffold21534 INFO [2014-07-02 15:07:45,798] [Preprocessor.java:241] [main] Processing chromosome scaffold21682 Processing chromosome scaffold21682 INFO [2014-07-02 15:07:45,839] [Preprocessor.java:241] [main] Processing chromosome scaffold21736 Processing chromosome scaffold21736 INFO [2014-07-02 15:07:45,860] [Preprocessor.java:241] [main] Processing chromosome scaffold21754 Processing chromosome scaffold21754 INFO [2014-07-02 15:07:45,875] [Preprocessor.java:241] [main] Processing chromosome scaffold218 Processing chromosome scaffold218 INFO [2014-07-02 15:07:45,935] [Preprocessor.java:241] [main] Processing chromosome scaffold219 Processing chromosome scaffold219 INFO [2014-07-02 15:07:46,725] [Preprocessor.java:241] [main] Processing chromosome scaffold21920 Processing chromosome scaffold21920 INFO [2014-07-02 15:07:46,731] [Preprocessor.java:241] [main] Processing chromosome scaffold21978 Processing chromosome scaffold21978 INFO [2014-07-02 15:07:46,737] [Preprocessor.java:241] [main] Processing chromosome scaffold21998 Processing chromosome scaffold21998 INFO [2014-07-02 15:07:46,745] [Preprocessor.java:241] [main] Processing chromosome scaffold22 Processing chromosome scaffold22 INFO [2014-07-02 15:07:47,011] [Preprocessor.java:241] [main] Processing chromosome scaffold220 Processing chromosome scaffold220 INFO [2014-07-02 15:07:47,019] [Preprocessor.java:241] [main] Processing chromosome scaffold22030 Processing chromosome scaffold22030 INFO [2014-07-02 15:07:47,041] [Preprocessor.java:241] [main] Processing chromosome scaffold22038 Processing chromosome scaffold22038 INFO [2014-07-02 15:07:47,056] [Preprocessor.java:241] [main] Processing chromosome scaffold22072 Processing chromosome scaffold22072 INFO [2014-07-02 15:07:47,067] [Preprocessor.java:241] [main] Processing chromosome scaffold221 Processing chromosome scaffold221 INFO [2014-07-02 15:07:47,091] [Preprocessor.java:241] [main] Processing chromosome scaffold222 Processing chromosome scaffold222 INFO [2014-07-02 15:07:47,116] [Preprocessor.java:241] [main] Processing chromosome scaffold22228 Processing chromosome scaffold22228 INFO [2014-07-02 15:07:47,190] [Preprocessor.java:241] [main] Processing chromosome scaffold22240 Processing chromosome scaffold22240 INFO [2014-07-02 15:07:47,208] [Preprocessor.java:241] [main] Processing chromosome scaffold223 Processing chromosome scaffold223 INFO [2014-07-02 15:07:47,258] [Preprocessor.java:241] [main] Processing chromosome scaffold224 Processing chromosome scaffold224 INFO [2014-07-02 15:07:47,293] [Preprocessor.java:241] [main] Processing chromosome scaffold22464 Processing chromosome scaffold22464 INFO [2014-07-02 15:07:47,309] [Preprocessor.java:241] [main] Processing chromosome scaffold22488 Processing chromosome scaffold22488 INFO [2014-07-02 15:07:47,330] [Preprocessor.java:241] [main] Processing chromosome scaffold225 Processing chromosome scaffold225 INFO [2014-07-02 15:07:47,341] [Preprocessor.java:241] [main] Processing chromosome scaffold226 Processing chromosome scaffold226 INFO [2014-07-02 15:07:48,779] [Preprocessor.java:241] [main] Processing chromosome scaffold22670 Processing chromosome scaffold22670 INFO [2014-07-02 15:07:48,794] [Preprocessor.java:241] [main] Processing chromosome scaffold227 Processing chromosome scaffold227 .INFO [2014-07-02 15:07:49,017] [Preprocessor.java:241] [main] Processing chromosome scaffold22766 Processing chromosome scaffold22766 INFO [2014-07-02 15:07:49,029] [Preprocessor.java:241] [main] Processing chromosome scaffold228 Processing chromosome scaffold228 INFO [2014-07-02 15:07:49,065] [Preprocessor.java:241] [main] Processing chromosome scaffold230 Processing chromosome scaffold230 INFO [2014-07-02 15:07:49,131] [Preprocessor.java:241] [main] Processing chromosome scaffold23018 Processing chromosome scaffold23018 INFO [2014-07-02 15:07:49,156] [Preprocessor.java:241] [main] Processing chromosome scaffold231 Processing chromosome scaffold231 INFO [2014-07-02 15:07:49,206] [Preprocessor.java:241] [main] Processing chromosome scaffold232 Processing chromosome scaffold232 INFO [2014-07-02 15:07:49,241] [Preprocessor.java:241] [main] Processing chromosome scaffold23228 Processing chromosome scaffold23228 INFO [2014-07-02 15:07:49,254] [Preprocessor.java:241] [main] Processing chromosome scaffold23290 Processing chromosome scaffold23290 INFO [2014-07-02 15:07:49,308] [Preprocessor.java:241] [main] Processing chromosome scaffold233 Processing chromosome scaffold233 INFO [2014-07-02 15:07:49,317] [Preprocessor.java:241] [main] Processing chromosome scaffold23358 Processing chromosome scaffold23358 INFO [2014-07-02 15:07:49,395] [Preprocessor.java:241] [main] Processing chromosome scaffold234 Processing chromosome scaffold234 INFO [2014-07-02 15:07:49,412] [Preprocessor.java:241] [main] Processing chromosome scaffold235 Processing chromosome scaffold235 INFO [2014-07-02 15:07:49,432] [Preprocessor.java:241] [main] Processing chromosome scaffold23524 Processing chromosome scaffold23524 INFO [2014-07-02 15:07:49,441] [Preprocessor.java:241] [main] Processing chromosome scaffold236 Processing chromosome scaffold236 INFO [2014-07-02 15:07:49,523] [Preprocessor.java:241] [main] Processing chromosome scaffold23696 Processing chromosome scaffold23696 INFO [2014-07-02 15:07:49,554] [Preprocessor.java:241] [main] Processing chromosome scaffold237 Processing chromosome scaffold237 INFO [2014-07-02 15:07:49,632] [Preprocessor.java:241] [main] Processing chromosome scaffold23816 Processing chromosome scaffold23816 INFO [2014-07-02 15:07:49,645] [Preprocessor.java:241] [main] Processing chromosome scaffold23854 Processing chromosome scaffold23854 INFO [2014-07-02 15:07:49,650] [Preprocessor.java:241] [main] Processing chromosome scaffold240 Processing chromosome scaffold240 INFO [2014-07-02 15:07:49,672] [Preprocessor.java:241] [main] Processing chromosome scaffold24002 Processing chromosome scaffold24002 INFO [2014-07-02 15:07:49,706] [Preprocessor.java:241] [main] Processing chromosome scaffold24006 Processing chromosome scaffold24006 INFO [2014-07-02 15:07:49,714] [Preprocessor.java:241] [main] Processing chromosome scaffold24028 Processing chromosome scaffold24028 INFO [2014-07-02 15:07:49,732] [Preprocessor.java:241] [main] Processing chromosome scaffold24066 Processing chromosome scaffold24066 INFO [2014-07-02 15:07:49,752] [Preprocessor.java:241] [main] Processing chromosome scaffold24070 Processing chromosome scaffold24070 INFO [2014-07-02 15:07:49,759] [Preprocessor.java:241] [main] Processing chromosome scaffold241 Processing chromosome scaffold241 INFO [2014-07-02 15:07:50,609] [Preprocessor.java:241] [main] Processing chromosome scaffold24102 Processing chromosome scaffold24102 INFO [2014-07-02 15:07:50,626] [Preprocessor.java:241] [main] Processing chromosome scaffold242 Processing chromosome scaffold242 INFO [2014-07-02 15:07:50,654] [Preprocessor.java:241] [main] Processing chromosome scaffold24238 Processing chromosome scaffold24238 INFO [2014-07-02 15:07:50,679] [Preprocessor.java:241] [main] Processing chromosome scaffold243 Processing chromosome scaffold243 INFO [2014-07-02 15:07:50,706] [Preprocessor.java:241] [main] Processing chromosome scaffold24332 Processing chromosome scaffold24332 INFO [2014-07-02 15:07:50,710] [Preprocessor.java:241] [main] Processing chromosome scaffold244 Processing chromosome scaffold244 INFO [2014-07-02 15:07:50,728] [Preprocessor.java:241] [main] Processing chromosome scaffold24412 Processing chromosome scaffold24412 INFO [2014-07-02 15:07:50,738] [Preprocessor.java:241] [main] Processing chromosome scaffold24484 Processing chromosome scaffold24484 INFO [2014-07-02 15:07:50,750] [Preprocessor.java:241] [main] Processing chromosome scaffold245 Processing chromosome scaffold245 INFO [2014-07-02 15:07:50,758] [Preprocessor.java:241] [main] Processing chromosome scaffold24528 Processing chromosome scaffold24528 INFO [2014-07-02 15:07:50,771] [Preprocessor.java:241] [main] Processing chromosome scaffold24554 Processing chromosome scaffold24554 INFO [2014-07-02 15:07:50,780] [Preprocessor.java:241] [main] Processing chromosome scaffold246 Processing chromosome scaffold246 INFO [2014-07-02 15:07:50,817] [Preprocessor.java:241] [main] Processing chromosome scaffold247 Processing chromosome scaffold247 INFO [2014-07-02 15:07:50,844] [Preprocessor.java:241] [main] Processing chromosome scaffold24702 Processing chromosome scaffold24702 INFO [2014-07-02 15:07:50,859] [Preprocessor.java:241] [main] Processing chromosome scaffold24772 Processing chromosome scaffold24772 INFO [2014-07-02 15:07:50,864] [Preprocessor.java:241] [main] Processing chromosome scaffold24776 Processing chromosome scaffold24776 INFO [2014-07-02 15:07:50,869] [Preprocessor.java:241] [main] Processing chromosome scaffold24784 Processing chromosome scaffold24784 INFO [2014-07-02 15:07:50,949] [Preprocessor.java:241] [main] Processing chromosome scaffold248 Processing chromosome scaffold248 INFO [2014-07-02 15:07:52,339] [Preprocessor.java:241] [main] Processing chromosome scaffold24950 Processing chromosome scaffold24950 INFO [2014-07-02 15:07:52,381] [Preprocessor.java:241] [main] Processing chromosome scaffold24958 Processing chromosome scaffold24958 INFO [2014-07-02 15:07:52,402] [Preprocessor.java:241] [main] Processing chromosome scaffold250 Processing chromosome scaffold250 INFO [2014-07-02 15:07:52,421] [Preprocessor.java:241] [main] Processing chromosome scaffold251 Processing chromosome scaffold251 INFO [2014-07-02 15:07:52,466] [Preprocessor.java:241] [main] Processing chromosome scaffold252 Processing chromosome scaffold252 INFO [2014-07-02 15:07:52,547] [Preprocessor.java:241] [main] Processing chromosome scaffold25200 Processing chromosome scaffold25200 INFO [2014-07-02 15:07:52,556] [Preprocessor.java:241] [main] Processing chromosome scaffold25224 Processing chromosome scaffold25224 INFO [2014-07-02 15:07:52,563] [Preprocessor.java:241] [main] Processing chromosome scaffold25284 Processing chromosome scaffold25284 INFO [2014-07-02 15:07:52,577] [Preprocessor.java:241] [main] Processing chromosome scaffold253 Processing chromosome scaffold253 INFO [2014-07-02 15:07:52,604] [Preprocessor.java:241] [main] Processing chromosome scaffold254 Processing chromosome scaffold254 INFO [2014-07-02 15:07:52,641] [Preprocessor.java:241] [main] Processing chromosome scaffold25462 Processing chromosome scaffold25462 INFO [2014-07-02 15:07:52,665] [Preprocessor.java:241] [main] Processing chromosome scaffold25474 Processing chromosome scaffold25474 INFO [2014-07-02 15:07:52,687] [Preprocessor.java:241] [main] Processing chromosome scaffold255 Processing chromosome scaffold255 INFO [2014-07-02 15:07:52,693] [Preprocessor.java:241] [main] Processing chromosome scaffold25520 Processing chromosome scaffold25520 INFO [2014-07-02 15:07:52,707] [Preprocessor.java:241] [main] Processing chromosome scaffold256 Processing chromosome scaffold256 INFO [2014-07-02 15:07:52,762] [Preprocessor.java:241] [main] Processing chromosome scaffold25628 Processing chromosome scaffold25628 INFO [2014-07-02 15:07:52,786] [Preprocessor.java:241] [main] Processing chromosome scaffold25658 Processing chromosome scaffold25658 INFO [2014-07-02 15:07:52,836] [Preprocessor.java:241] [main] Processing chromosome scaffold25660 Processing chromosome scaffold25660 INFO [2014-07-02 15:07:52,878] [Preprocessor.java:241] [main] Processing chromosome scaffold257 Processing chromosome scaffold257 INFO [2014-07-02 15:07:55,341] [Preprocessor.java:241] [main] Processing chromosome scaffold258 Processing chromosome scaffold258 INFO [2014-07-02 15:07:55,465] [Preprocessor.java:241] [main] Processing chromosome scaffold25846 Processing chromosome scaffold25846 INFO [2014-07-02 15:07:55,480] [Preprocessor.java:241] [main] Processing chromosome scaffold25910 Processing chromosome scaffold25910 INFO [2014-07-02 15:07:55,490] [Preprocessor.java:241] [main] Processing chromosome scaffold26 Processing chromosome scaffold26 INFO [2014-07-02 15:07:55,537] [Preprocessor.java:241] [main] Processing chromosome scaffold260 Processing chromosome scaffold260 INFO [2014-07-02 15:07:55,559] [Preprocessor.java:241] [main] Processing chromosome scaffold26074 Processing chromosome scaffold26074 INFO [2014-07-02 15:07:55,583] [Preprocessor.java:241] [main] Processing chromosome scaffold261 Processing chromosome scaffold261 INFO [2014-07-02 15:07:55,588] [Preprocessor.java:241] [main] Processing chromosome scaffold26176 Processing chromosome scaffold26176 INFO [2014-07-02 15:07:55,627] [Preprocessor.java:241] [main] Processing chromosome scaffold262 Processing chromosome scaffold262 INFO [2014-07-02 15:07:55,710] [Preprocessor.java:241] [main] Processing chromosome scaffold26218 Processing chromosome scaffold26218 INFO [2014-07-02 15:07:55,729] [Preprocessor.java:241] [main] Processing chromosome scaffold26222 Processing chromosome scaffold26222 INFO [2014-07-02 15:07:55,733] [Preprocessor.java:241] [main] Processing chromosome scaffold264 Processing chromosome scaffold264 INFO [2014-07-02 15:07:55,761] [Preprocessor.java:241] [main] Processing chromosome scaffold265 Processing chromosome scaffold265 INFO [2014-07-02 15:07:55,775] [Preprocessor.java:241] [main] Processing chromosome scaffold26586 Processing chromosome scaffold26586 INFO [2014-07-02 15:07:55,803] [Preprocessor.java:241] [main] Processing chromosome scaffold266 Processing chromosome scaffold266 INFO [2014-07-02 15:07:55,856] [Preprocessor.java:241] [main] Processing chromosome scaffold26634 Processing chromosome scaffold26634 INFO [2014-07-02 15:07:55,861] [Preprocessor.java:241] [main] Processing chromosome scaffold267 Processing chromosome scaffold267 INFO [2014-07-02 15:07:55,933] [Preprocessor.java:241] [main] Processing chromosome scaffold268 Processing chromosome scaffold268 INFO [2014-07-02 15:07:55,967] [Preprocessor.java:241] [main] Processing chromosome scaffold26804 Processing chromosome scaffold26804 INFO [2014-07-02 15:07:55,982] [Preprocessor.java:241] [main] Processing chromosome scaffold269 Processing chromosome scaffold269 INFO [2014-07-02 15:07:56,124] [Preprocessor.java:241] [main] Processing chromosome scaffold27 Processing chromosome scaffold27 INFO [2014-07-02 15:07:56,153] [Preprocessor.java:241] [main] Processing chromosome scaffold270 Processing chromosome scaffold270 INFO [2014-07-02 15:07:56,210] [Preprocessor.java:241] [main] Processing chromosome scaffold27078 Processing chromosome scaffold27078 INFO [2014-07-02 15:07:56,217] [Preprocessor.java:241] [main] Processing chromosome scaffold27080 Processing chromosome scaffold27080 INFO [2014-07-02 15:07:56,221] [Preprocessor.java:241] [main] Processing chromosome scaffold271 Processing chromosome scaffold271 INFO [2014-07-02 15:08:01,192] [Preprocessor.java:241] [main] Processing chromosome scaffold27192 Processing chromosome scaffold27192 INFO [2014-07-02 15:08:01,221] [Preprocessor.java:241] [main] Processing chromosome scaffold272 Processing chromosome scaffold272 INFO [2014-07-02 15:08:01,244] [Preprocessor.java:241] [main] Processing chromosome scaffold27274 Processing chromosome scaffold27274 INFO [2014-07-02 15:08:01,263] [Preprocessor.java:241] [main] Processing chromosome scaffold273 Processing chromosome scaffold273 INFO [2014-07-02 15:08:01,299] [Preprocessor.java:241] [main] Processing chromosome scaffold27302 Processing chromosome scaffold27302 INFO [2014-07-02 15:08:01,322] [Preprocessor.java:241] [main] Processing chromosome scaffold274 Processing chromosome scaffold274 INFO [2014-07-02 15:08:01,398] [Preprocessor.java:241] [main] Processing chromosome scaffold27422 Processing chromosome scaffold27422 INFO [2014-07-02 15:08:01,424] [Preprocessor.java:241] [main] Processing chromosome scaffold275 Processing chromosome scaffold275 INFO [2014-07-02 15:08:01,442] [Preprocessor.java:241] [main] Processing chromosome scaffold27582 Processing chromosome scaffold27582 INFO [2014-07-02 15:08:01,455] [Preprocessor.java:241] [main] Processing chromosome scaffold276 Processing chromosome scaffold276 INFO [2014-07-02 15:08:01,529] [Preprocessor.java:241] [main] Processing chromosome scaffold27608 Processing chromosome scaffold27608 INFO [2014-07-02 15:08:01,536] [Preprocessor.java:241] [main] Processing chromosome scaffold27618 Processing chromosome scaffold27618 INFO [2014-07-02 15:08:01,541] [Preprocessor.java:241] [main] Processing chromosome scaffold27654 Processing chromosome scaffold27654 INFO [2014-07-02 15:08:01,549] [Preprocessor.java:241] [main] Processing chromosome scaffold277 Processing chromosome scaffold277 INFO [2014-07-02 15:08:01,614] [Preprocessor.java:241] [main] Processing chromosome scaffold27724 Processing chromosome scaffold27724 INFO [2014-07-02 15:08:01,622] [Preprocessor.java:241] [main] Processing chromosome scaffold27740 Processing chromosome scaffold27740 INFO [2014-07-02 15:08:01,649] [Preprocessor.java:241] [main] Processing chromosome scaffold278 Processing chromosome scaffold278 INFO [2014-07-02 15:08:01,694] [Preprocessor.java:241] [main] Processing chromosome scaffold27804 Processing chromosome scaffold27804 INFO [2014-07-02 15:08:01,748] [Preprocessor.java:241] [main] Processing chromosome scaffold27810 Processing chromosome scaffold27810 INFO [2014-07-02 15:08:01,781] [Preprocessor.java:241] [main] Processing chromosome scaffold27856 Processing chromosome scaffold27856 INFO [2014-07-02 15:08:01,792] [Preprocessor.java:241] [main] Processing chromosome scaffold27858 Processing chromosome scaffold27858 INFO [2014-07-02 15:08:01,821] [Preprocessor.java:241] [main] Processing chromosome scaffold279 Processing chromosome scaffold279 INFO [2014-07-02 15:08:01,893] [Preprocessor.java:241] [main] Processing chromosome scaffold27958 Processing chromosome scaffold27958 INFO [2014-07-02 15:08:01,920] [Preprocessor.java:241] [main] Processing chromosome scaffold280 Processing chromosome scaffold280 INFO [2014-07-02 15:08:02,058] [Preprocessor.java:241] [main] Processing chromosome scaffold28092 Processing chromosome scaffold28092 INFO [2014-07-02 15:08:02,080] [Preprocessor.java:241] [main] Processing chromosome scaffold281 Processing chromosome scaffold281 INFO [2014-07-02 15:08:02,117] [Preprocessor.java:241] [main] Processing chromosome scaffold28134 Processing chromosome scaffold28134 INFO [2014-07-02 15:08:02,140] [Preprocessor.java:241] [main] Processing chromosome scaffold28138 Processing chromosome scaffold28138 INFO [2014-07-02 15:08:02,147] [Preprocessor.java:241] [main] Processing chromosome scaffold28182 Processing chromosome scaffold28182 INFO [2014-07-02 15:08:02,154] [Preprocessor.java:241] [main] Processing chromosome scaffold282 Processing chromosome scaffold282 INFO [2014-07-02 15:08:02,211] [Preprocessor.java:241] [main] Processing chromosome scaffold28290 Processing chromosome scaffold28290 INFO [2014-07-02 15:08:02,220] [Preprocessor.java:241] [main] Processing chromosome scaffold283 Processing chromosome scaffold283 INFO [2014-07-02 15:08:02,245] [Preprocessor.java:241] [main] Processing chromosome scaffold28314 Processing chromosome scaffold28314 INFO [2014-07-02 15:08:02,268] [Preprocessor.java:241] [main] Processing chromosome scaffold28372 Processing chromosome scaffold28372 INFO [2014-07-02 15:08:02,283] [Preprocessor.java:241] [main] Processing chromosome scaffold284 Processing chromosome scaffold284 INFO [2014-07-02 15:08:02,307] [Preprocessor.java:241] [main] Processing chromosome scaffold28478 Processing chromosome scaffold28478 INFO [2014-07-02 15:08:02,322] [Preprocessor.java:241] [main] Processing chromosome scaffold285 Processing chromosome scaffold285 INFO [2014-07-02 15:08:02,429] [Preprocessor.java:241] [main] Processing chromosome scaffold28564 Processing chromosome scaffold28564 INFO [2014-07-02 15:08:02,441] [Preprocessor.java:241] [main] Processing chromosome scaffold286 Processing chromosome scaffold286 INFO [2014-07-02 15:08:02,493] [Preprocessor.java:241] [main] Processing chromosome scaffold28612 Processing chromosome scaffold28612 INFO [2014-07-02 15:08:02,511] [Preprocessor.java:241] [main] Processing chromosome scaffold28670 Processing chromosome scaffold28670 INFO [2014-07-02 15:08:02,514] [Preprocessor.java:241] [main] Processing chromosome scaffold28672 Processing chromosome scaffold28672 INFO [2014-07-02 15:08:02,524] [Preprocessor.java:241] [main] Processing chromosome scaffold28682 Processing chromosome scaffold28682 INFO [2014-07-02 15:08:02,527] [Preprocessor.java:241] [main] Processing chromosome scaffold287 Processing chromosome scaffold287 INFO [2014-07-02 15:08:02,551] [Preprocessor.java:241] [main] Processing chromosome scaffold28720 Processing chromosome scaffold28720 INFO [2014-07-02 15:08:02,584] [Preprocessor.java:241] [main] Processing chromosome scaffold288 Processing chromosome scaffold288 .INFO [2014-07-02 15:08:02,695] [Preprocessor.java:241] [main] Processing chromosome scaffold289 Processing chromosome scaffold289 INFO [2014-07-02 15:08:02,721] [Preprocessor.java:241] [main] Processing chromosome scaffold29 Processing chromosome scaffold29 INFO [2014-07-02 15:08:02,756] [Preprocessor.java:241] [main] Processing chromosome scaffold290 Processing chromosome scaffold290 INFO [2014-07-02 15:08:05,627] [Preprocessor.java:241] [main] Processing chromosome scaffold29000 Processing chromosome scaffold29000 INFO [2014-07-02 15:08:05,690] [Preprocessor.java:241] [main] Processing chromosome scaffold29020 Processing chromosome scaffold29020 INFO [2014-07-02 15:08:05,696] [Preprocessor.java:241] [main] Processing chromosome scaffold29034 Processing chromosome scaffold29034 INFO [2014-07-02 15:08:05,704] [Preprocessor.java:241] [main] Processing chromosome scaffold29056 Processing chromosome scaffold29056 INFO [2014-07-02 15:08:05,767] [Preprocessor.java:241] [main] Processing chromosome scaffold29068 Processing chromosome scaffold29068 INFO [2014-07-02 15:08:05,777] [Preprocessor.java:241] [main] Processing chromosome scaffold29078 Processing chromosome scaffold29078 INFO [2014-07-02 15:08:05,794] [Preprocessor.java:241] [main] Processing chromosome scaffold291 Processing chromosome scaffold291 INFO [2014-07-02 15:08:05,819] [Preprocessor.java:241] [main] Processing chromosome scaffold29126 Processing chromosome scaffold29126 INFO [2014-07-02 15:08:05,846] [Preprocessor.java:241] [main] Processing chromosome scaffold29142 Processing chromosome scaffold29142 INFO [2014-07-02 15:08:05,855] [Preprocessor.java:241] [main] Processing chromosome scaffold29166 Processing chromosome scaffold29166 INFO [2014-07-02 15:08:05,858] [Preprocessor.java:241] [main] Processing chromosome scaffold292 Processing chromosome scaffold292 INFO [2014-07-02 15:08:05,896] [Preprocessor.java:241] [main] Processing chromosome scaffold29316 Processing chromosome scaffold29316 INFO [2014-07-02 15:08:05,927] [Preprocessor.java:241] [main] Processing chromosome scaffold29334 Processing chromosome scaffold29334 INFO [2014-07-02 15:08:05,933] [Preprocessor.java:241] [main] Processing chromosome scaffold29336 Processing chromosome scaffold29336 INFO [2014-07-02 15:08:05,975] [Preprocessor.java:241] [main] Processing chromosome scaffold29372 Processing chromosome scaffold29372 INFO [2014-07-02 15:08:05,989] [Preprocessor.java:241] [main] Processing chromosome scaffold294 Processing chromosome scaffold294 INFO [2014-07-02 15:08:06,042] [Preprocessor.java:241] [main] Processing chromosome scaffold29468 Processing chromosome scaffold29468 INFO [2014-07-02 15:08:06,056] [Preprocessor.java:241] [main] Processing chromosome scaffold29486 Processing chromosome scaffold29486 INFO [2014-07-02 15:08:06,064] [Preprocessor.java:241] [main] Processing chromosome scaffold29492 Processing chromosome scaffold29492 INFO [2014-07-02 15:08:06,066] [Preprocessor.java:241] [main] Processing chromosome scaffold295 Processing chromosome scaffold295 INFO [2014-07-02 15:08:06,103] [Preprocessor.java:241] [main] Processing chromosome scaffold29522 Processing chromosome scaffold29522 INFO [2014-07-02 15:08:06,169] [Preprocessor.java:241] [main] Processing chromosome scaffold29534 Processing chromosome scaffold29534 INFO [2014-07-02 15:08:06,209] [Preprocessor.java:241] [main] Processing chromosome scaffold29580 Processing chromosome scaffold29580 INFO [2014-07-02 15:08:06,267] [Preprocessor.java:241] [main] Processing chromosome scaffold29598 Processing chromosome scaffold29598 INFO [2014-07-02 15:08:06,274] [Preprocessor.java:241] [main] Processing chromosome scaffold296 Processing chromosome scaffold296 INFO [2014-07-02 15:08:06,326] [Preprocessor.java:241] [main] Processing chromosome scaffold29654 Processing chromosome scaffold29654 INFO [2014-07-02 15:08:06,351] [Preprocessor.java:241] [main] Processing chromosome scaffold29660 Processing chromosome scaffold29660 INFO [2014-07-02 15:08:06,359] [Preprocessor.java:241] [main] Processing chromosome scaffold29712 Processing chromosome scaffold29712 INFO [2014-07-02 15:08:06,362] [Preprocessor.java:241] [main] Processing chromosome scaffold29728 Processing chromosome scaffold29728 INFO [2014-07-02 15:08:06,373] [Preprocessor.java:241] [main] Processing chromosome scaffold29760 Processing chromosome scaffold29760 INFO [2014-07-02 15:08:06,377] [Preprocessor.java:241] [main] Processing chromosome scaffold29776 Processing chromosome scaffold29776 INFO [2014-07-02 15:08:06,381] [Preprocessor.java:241] [main] Processing chromosome scaffold298 Processing chromosome scaffold298 INFO [2014-07-02 15:08:06,449] [Preprocessor.java:241] [main] Processing chromosome scaffold29802 Processing chromosome scaffold29802 INFO [2014-07-02 15:08:06,455] [Preprocessor.java:241] [main] Processing chromosome scaffold29842 Processing chromosome scaffold29842 INFO [2014-07-02 15:08:06,466] [Preprocessor.java:241] [main] Processing chromosome scaffold29846 Processing chromosome scaffold29846 INFO [2014-07-02 15:08:06,468] [Preprocessor.java:241] [main] Processing chromosome scaffold29852 Processing chromosome scaffold29852 INFO [2014-07-02 15:08:06,471] [Preprocessor.java:241] [main] Processing chromosome scaffold29856 Processing chromosome scaffold29856 INFO [2014-07-02 15:08:06,498] [Preprocessor.java:241] [main] Processing chromosome scaffold29874 Processing chromosome scaffold29874 INFO [2014-07-02 15:08:06,509] [Preprocessor.java:241] [main] Processing chromosome scaffold299 Processing chromosome scaffold299 INFO [2014-07-02 15:08:06,525] [Preprocessor.java:241] [main] Processing chromosome scaffold29906 Processing chromosome scaffold29906 INFO [2014-07-02 15:08:06,529] [Preprocessor.java:241] [main] Processing chromosome scaffold29912 Processing chromosome scaffold29912 INFO [2014-07-02 15:08:06,549] [Preprocessor.java:241] [main] Processing chromosome scaffold3 Processing chromosome scaffold3 INFO [2014-07-02 15:08:06,731] [Preprocessor.java:241] [main] Processing chromosome scaffold300 Processing chromosome scaffold300 INFO [2014-07-02 15:08:06,752] [Preprocessor.java:241] [main] Processing chromosome scaffold30010 Processing chromosome scaffold30010 INFO [2014-07-02 15:08:06,760] [Preprocessor.java:241] [main] Processing chromosome scaffold30034 Processing chromosome scaffold30034 INFO [2014-07-02 15:08:06,777] [Preprocessor.java:241] [main] Processing chromosome scaffold30052 Processing chromosome scaffold30052 INFO [2014-07-02 15:08:06,788] [Preprocessor.java:241] [main] Processing chromosome scaffold30068 Processing chromosome scaffold30068 INFO [2014-07-02 15:08:06,814] [Preprocessor.java:241] [main] Processing chromosome scaffold30078 Processing chromosome scaffold30078 INFO [2014-07-02 15:08:06,834] [Preprocessor.java:241] [main] Processing chromosome scaffold301 Processing chromosome scaffold301 INFO [2014-07-02 15:08:06,960] [Preprocessor.java:241] [main] Processing chromosome scaffold30150 Processing chromosome scaffold30150 INFO [2014-07-02 15:08:06,985] [Preprocessor.java:241] [main] Processing chromosome scaffold30164 Processing chromosome scaffold30164 INFO [2014-07-02 15:08:06,991] [Preprocessor.java:241] [main] Processing chromosome scaffold30192 Processing chromosome scaffold30192 INFO [2014-07-02 15:08:06,994] [Preprocessor.java:241] [main] Processing chromosome scaffold302 Processing chromosome scaffold302 INFO [2014-07-02 15:08:07,027] [Preprocessor.java:241] [main] Processing chromosome scaffold30212 Processing chromosome scaffold30212 INFO [2014-07-02 15:08:07,062] [Preprocessor.java:241] [main] Processing chromosome scaffold30256 Processing chromosome scaffold30256 INFO [2014-07-02 15:08:07,079] [Preprocessor.java:241] [main] Processing chromosome scaffold303 Processing chromosome scaffold303 INFO [2014-07-02 15:08:07,092] [Preprocessor.java:241] [main] Processing chromosome scaffold30304 Processing chromosome scaffold30304 INFO [2014-07-02 15:08:07,103] [Preprocessor.java:241] [main] Processing chromosome scaffold30314 Processing chromosome scaffold30314 INFO [2014-07-02 15:08:07,116] [Preprocessor.java:241] [main] Processing chromosome scaffold30348 Processing chromosome scaffold30348 INFO [2014-07-02 15:08:07,162] [Preprocessor.java:241] [main] Processing chromosome scaffold304 Processing chromosome scaffold304 INFO [2014-07-02 15:08:07,233] [Preprocessor.java:241] [main] Processing chromosome scaffold30442 Processing chromosome scaffold30442 INFO [2014-07-02 15:08:07,256] [Preprocessor.java:241] [main] Processing chromosome scaffold30462 Processing chromosome scaffold30462 INFO [2014-07-02 15:08:07,264] [Preprocessor.java:241] [main] Processing chromosome scaffold30486 Processing chromosome scaffold30486 INFO [2014-07-02 15:08:07,275] [Preprocessor.java:241] [main] Processing chromosome scaffold305 Processing chromosome scaffold305 INFO [2014-07-02 15:08:10,714] [Preprocessor.java:241] [main] Processing chromosome scaffold30524 Processing chromosome scaffold30524 INFO [2014-07-02 15:08:10,723] [Preprocessor.java:241] [main] Processing chromosome scaffold30556 Processing chromosome scaffold30556 INFO [2014-07-02 15:08:10,754] [Preprocessor.java:241] [main] Processing chromosome scaffold30596 Processing chromosome scaffold30596 INFO [2014-07-02 15:08:10,778] [Preprocessor.java:241] [main] Processing chromosome scaffold30598 Processing chromosome scaffold30598 INFO [2014-07-02 15:08:10,814] [Preprocessor.java:241] [main] Processing chromosome scaffold306 Processing chromosome scaffold306 INFO [2014-07-02 15:08:10,828] [Preprocessor.java:241] [main] Processing chromosome scaffold30610 Processing chromosome scaffold30610 INFO [2014-07-02 15:08:10,842] [Preprocessor.java:241] [main] Processing chromosome scaffold30616 Processing chromosome scaffold30616 INFO [2014-07-02 15:08:10,861] [Preprocessor.java:241] [main] Processing chromosome scaffold30654 Processing chromosome scaffold30654 INFO [2014-07-02 15:08:10,909] [Preprocessor.java:241] [main] Processing chromosome scaffold30672 Processing chromosome scaffold30672 INFO [2014-07-02 15:08:10,941] [Preprocessor.java:241] [main] Processing chromosome scaffold30678 Processing chromosome scaffold30678 INFO [2014-07-02 15:08:10,969] [Preprocessor.java:241] [main] Processing chromosome scaffold30682 Processing chromosome scaffold30682 INFO [2014-07-02 15:08:11,000] [Preprocessor.java:241] [main] Processing chromosome scaffold30690 Processing chromosome scaffold30690 INFO [2014-07-02 15:08:11,004] [Preprocessor.java:241] [main] Processing chromosome scaffold307 Processing chromosome scaffold307 INFO [2014-07-02 15:08:11,013] [Preprocessor.java:241] [main] Processing chromosome scaffold30702 Processing chromosome scaffold30702 INFO [2014-07-02 15:08:11,017] [Preprocessor.java:241] [main] Processing chromosome scaffold30712 Processing chromosome scaffold30712 INFO [2014-07-02 15:08:11,021] [Preprocessor.java:241] [main] Processing chromosome scaffold30716 Processing chromosome scaffold30716 INFO [2014-07-02 15:08:11,031] [Preprocessor.java:241] [main] Processing chromosome scaffold30744 Processing chromosome scaffold30744 INFO [2014-07-02 15:08:11,042] [Preprocessor.java:241] [main] Processing chromosome scaffold30774 Processing chromosome scaffold30774 INFO [2014-07-02 15:08:11,084] [Preprocessor.java:241] [main] Processing chromosome scaffold30794 Processing chromosome scaffold30794 INFO [2014-07-02 15:08:11,097] [Preprocessor.java:241] [main] Processing chromosome scaffold30798 Processing chromosome scaffold30798 INFO [2014-07-02 15:08:11,109] [Preprocessor.java:241] [main] Processing chromosome scaffold308 Processing chromosome scaffold308 INFO [2014-07-02 15:08:11,151] [Preprocessor.java:241] [main] Processing chromosome scaffold30814 Processing chromosome scaffold30814 INFO [2014-07-02 15:08:11,157] [Preprocessor.java:241] [main] Processing chromosome scaffold30818 Processing chromosome scaffold30818 INFO [2014-07-02 15:08:11,187] [Preprocessor.java:241] [main] Processing chromosome scaffold30826 Processing chromosome scaffold30826 INFO [2014-07-02 15:08:11,197] [Preprocessor.java:241] [main] Processing chromosome scaffold30854 Processing chromosome scaffold30854 INFO [2014-07-02 15:08:11,204] [Preprocessor.java:241] [main] Processing chromosome scaffold30894 Processing chromosome scaffold30894 INFO [2014-07-02 15:08:11,209] [Preprocessor.java:241] [main] Processing chromosome scaffold309 Processing chromosome scaffold309 INFO [2014-07-02 15:08:11,250] [Preprocessor.java:241] [main] Processing chromosome scaffold30902 Processing chromosome scaffold30902 INFO [2014-07-02 15:08:11,256] [Preprocessor.java:241] [main] Processing chromosome scaffold30922 Processing chromosome scaffold30922 INFO [2014-07-02 15:08:11,260] [Preprocessor.java:241] [main] Processing chromosome scaffold30976 Processing chromosome scaffold30976 INFO [2014-07-02 15:08:11,264] [Preprocessor.java:241] [main] Processing chromosome scaffold31 Processing chromosome scaffold31 INFO [2014-07-02 15:08:11,293] [Preprocessor.java:241] [main] Processing chromosome scaffold310 Processing chromosome scaffold310 INFO [2014-07-02 15:08:11,300] [Preprocessor.java:241] [main] Processing chromosome scaffold31002 Processing chromosome scaffold31002 INFO [2014-07-02 15:08:11,304] [Preprocessor.java:241] [main] Processing chromosome scaffold31008 Processing chromosome scaffold31008 INFO [2014-07-02 15:08:11,315] [Preprocessor.java:241] [main] Processing chromosome scaffold31018 Processing chromosome scaffold31018 INFO [2014-07-02 15:08:11,327] [Preprocessor.java:241] [main] Processing chromosome scaffold31032 Processing chromosome scaffold31032 INFO [2014-07-02 15:08:11,334] [Preprocessor.java:241] [main] Processing chromosome scaffold31038 Processing chromosome scaffold31038 INFO [2014-07-02 15:08:11,366] [Preprocessor.java:241] [main] Processing chromosome scaffold31080 Processing chromosome scaffold31080 INFO [2014-07-02 15:08:11,417] [Preprocessor.java:241] [main] Processing chromosome scaffold31090 Processing chromosome scaffold31090 INFO [2014-07-02 15:08:11,435] [Preprocessor.java:241] [main] Processing chromosome scaffold31098 Processing chromosome scaffold31098 INFO [2014-07-02 15:08:11,461] [Preprocessor.java:241] [main] Processing chromosome scaffold311 Processing chromosome scaffold311 INFO [2014-07-02 15:08:11,484] [Preprocessor.java:241] [main] Processing chromosome scaffold312 Processing chromosome scaffold312 INFO [2014-07-02 15:08:11,510] [Preprocessor.java:241] [main] Processing chromosome scaffold31208 Processing chromosome scaffold31208 INFO [2014-07-02 15:08:11,515] [Preprocessor.java:241] [main] Processing chromosome scaffold31212 Processing chromosome scaffold31212 INFO [2014-07-02 15:08:11,534] [Preprocessor.java:241] [main] Processing chromosome scaffold31222 Processing chromosome scaffold31222 INFO [2014-07-02 15:08:11,541] [Preprocessor.java:241] [main] Processing chromosome scaffold31228 Processing chromosome scaffold31228 INFO [2014-07-02 15:08:11,551] [Preprocessor.java:241] [main] Processing chromosome scaffold31230 Processing chromosome scaffold31230 INFO [2014-07-02 15:08:11,572] [Preprocessor.java:241] [main] Processing chromosome scaffold31238 Processing chromosome scaffold31238 INFO [2014-07-02 15:08:11,617] [Preprocessor.java:241] [main] Processing chromosome scaffold31250 Processing chromosome scaffold31250 INFO [2014-07-02 15:08:11,673] [Preprocessor.java:241] [main] Processing chromosome scaffold31258 Processing chromosome scaffold31258 INFO [2014-07-02 15:08:11,678] [Preprocessor.java:241] [main] Processing chromosome scaffold31282 Processing chromosome scaffold31282 INFO [2014-07-02 15:08:11,693] [Preprocessor.java:241] [main] Processing chromosome scaffold313 Processing chromosome scaffold313 INFO [2014-07-02 15:08:11,896] [Preprocessor.java:241] [main] Processing chromosome scaffold31308 Processing chromosome scaffold31308 INFO [2014-07-02 15:08:11,921] [Preprocessor.java:241] [main] Processing chromosome scaffold31318 Processing chromosome scaffold31318 INFO [2014-07-02 15:08:11,965] [Preprocessor.java:241] [main] Processing chromosome scaffold31320 Processing chromosome scaffold31320 INFO [2014-07-02 15:08:11,977] [Preprocessor.java:241] [main] Processing chromosome scaffold31330 Processing chromosome scaffold31330 INFO [2014-07-02 15:08:11,998] [Preprocessor.java:241] [main] Processing chromosome scaffold31334 Processing chromosome scaffold31334 INFO [2014-07-02 15:08:12,014] [Preprocessor.java:241] [main] Processing chromosome scaffold31348 Processing chromosome scaffold31348 INFO [2014-07-02 15:08:12,033] [Preprocessor.java:241] [main] Processing chromosome scaffold31376 Processing chromosome scaffold31376 INFO [2014-07-02 15:08:12,066] [Preprocessor.java:241] [main] Processing chromosome scaffold31378 Processing chromosome scaffold31378 INFO [2014-07-02 15:08:12,085] [Preprocessor.java:241] [main] Processing chromosome scaffold31382 Processing chromosome scaffold31382 INFO [2014-07-02 15:08:12,094] [Preprocessor.java:241] [main] Processing chromosome scaffold31388 Processing chromosome scaffold31388 INFO [2014-07-02 15:08:12,131] [Preprocessor.java:241] [main] Processing chromosome scaffold31392 Processing chromosome scaffold31392 INFO [2014-07-02 15:08:12,136] [Preprocessor.java:241] [main] Processing chromosome scaffold314 Processing chromosome scaffold314 INFO [2014-07-02 15:08:12,157] [Preprocessor.java:241] [main] Processing chromosome scaffold31440 Processing chromosome scaffold31440 INFO [2014-07-02 15:08:12,163] [Preprocessor.java:241] [main] Processing chromosome scaffold31454 Processing chromosome scaffold31454 INFO [2014-07-02 15:08:12,165] [Preprocessor.java:241] [main] Processing chromosome scaffold31464 Processing chromosome scaffold31464 INFO [2014-07-02 15:08:12,173] [Preprocessor.java:241] [main] Processing chromosome scaffold31478 Processing chromosome scaffold31478 INFO [2014-07-02 15:08:12,183] [Preprocessor.java:241] [main] Processing chromosome scaffold31484 Processing chromosome scaffold31484 INFO [2014-07-02 15:08:12,201] [Preprocessor.java:241] [main] Processing chromosome scaffold315 Processing chromosome scaffold315 INFO [2014-07-02 15:08:12,852] [Preprocessor.java:241] [main] Processing chromosome scaffold31512 Processing chromosome scaffold31512 INFO [2014-07-02 15:08:12,885] [Preprocessor.java:241] [main] Processing chromosome scaffold31514 Processing chromosome scaffold31514 INFO [2014-07-02 15:08:12,920] [Preprocessor.java:241] [main] Processing chromosome scaffold31524 Processing chromosome scaffold31524 INFO [2014-07-02 15:08:12,944] [Preprocessor.java:241] [main] Processing chromosome scaffold31534 Processing chromosome scaffold31534 INFO [2014-07-02 15:08:12,976] [Preprocessor.java:241] [main] Processing chromosome scaffold31556 Processing chromosome scaffold31556 INFO [2014-07-02 15:08:13,027] [Preprocessor.java:241] [main] Processing chromosome scaffold31560 Processing chromosome scaffold31560 INFO [2014-07-02 15:08:13,030] [Preprocessor.java:241] [main] Processing chromosome scaffold316 Processing chromosome scaffold316 INFO [2014-07-02 15:08:13,039] [Preprocessor.java:241] [main] Processing chromosome scaffold31600 Processing chromosome scaffold31600 INFO [2014-07-02 15:08:13,042] [Preprocessor.java:241] [main] Processing chromosome scaffold31624 Processing chromosome scaffold31624 INFO [2014-07-02 15:08:13,049] [Preprocessor.java:241] [main] Processing chromosome scaffold31638 Processing chromosome scaffold31638 INFO [2014-07-02 15:08:13,056] [Preprocessor.java:241] [main] Processing chromosome scaffold31640 Processing chromosome scaffold31640 INFO [2014-07-02 15:08:13,064] [Preprocessor.java:241] [main] Processing chromosome scaffold31660 Processing chromosome scaffold31660 INFO [2014-07-02 15:08:13,083] [Preprocessor.java:241] [main] Processing chromosome scaffold31680 Processing chromosome scaffold31680 INFO [2014-07-02 15:08:13,113] [Preprocessor.java:241] [main] Processing chromosome scaffold31684 Processing chromosome scaffold31684 INFO [2014-07-02 15:08:13,118] [Preprocessor.java:241] [main] Processing chromosome scaffold317 Processing chromosome scaffold317 INFO [2014-07-02 15:08:13,491] [Preprocessor.java:241] [main] Processing chromosome scaffold31716 Processing chromosome scaffold31716 INFO [2014-07-02 15:08:13,497] [Preprocessor.java:241] [main] Processing chromosome scaffold31720 Processing chromosome scaffold31720 INFO [2014-07-02 15:08:13,500] [Preprocessor.java:241] [main] Processing chromosome scaffold31736 Processing chromosome scaffold31736 INFO [2014-07-02 15:08:13,531] [Preprocessor.java:241] [main] Processing chromosome scaffold31748 Processing chromosome scaffold31748 INFO [2014-07-02 15:08:13,536] [Preprocessor.java:241] [main] Processing chromosome scaffold31752 Processing chromosome scaffold31752 INFO [2014-07-02 15:08:13,546] [Preprocessor.java:241] [main] Processing chromosome scaffold31756 Processing chromosome scaffold31756 INFO [2014-07-02 15:08:13,555] [Preprocessor.java:241] [main] Processing chromosome scaffold31770 Processing chromosome scaffold31770 INFO [2014-07-02 15:08:13,571] [Preprocessor.java:241] [main] Processing chromosome scaffold31784 Processing chromosome scaffold31784 INFO [2014-07-02 15:08:13,590] [Preprocessor.java:241] [main] Processing chromosome scaffold31792 Processing chromosome scaffold31792 INFO [2014-07-02 15:08:13,604] [Preprocessor.java:241] [main] Processing chromosome scaffold318 Processing chromosome scaffold318 INFO [2014-07-02 15:08:13,612] [Preprocessor.java:241] [main] Processing chromosome scaffold31816 Processing chromosome scaffold31816 INFO [2014-07-02 15:08:13,629] [Preprocessor.java:241] [main] Processing chromosome scaffold31842 Processing chromosome scaffold31842 INFO [2014-07-02 15:08:13,634] [Preprocessor.java:241] [main] Processing chromosome scaffold31864 Processing chromosome scaffold31864 INFO [2014-07-02 15:08:13,642] [Preprocessor.java:241] [main] Processing chromosome scaffold31880 Processing chromosome scaffold31880 INFO [2014-07-02 15:08:13,645] [Preprocessor.java:241] [main] Processing chromosome scaffold31900 Processing chromosome scaffold31900 INFO [2014-07-02 15:08:13,666] [Preprocessor.java:241] [main] Processing chromosome scaffold31920 Processing chromosome scaffold31920 INFO [2014-07-02 15:08:13,679] [Preprocessor.java:241] [main] Processing chromosome scaffold31954 Processing chromosome scaffold31954 INFO [2014-07-02 15:08:13,693] [Preprocessor.java:241] [main] Processing chromosome scaffold31956 Processing chromosome scaffold31956 INFO [2014-07-02 15:08:13,715] [Preprocessor.java:241] [main] Processing chromosome scaffold32 Processing chromosome scaffold32 INFO [2014-07-02 15:08:13,788] [Preprocessor.java:241] [main] Processing chromosome scaffold320 Processing chromosome scaffold320 INFO [2014-07-02 15:08:13,799] [Preprocessor.java:241] [main] Processing chromosome scaffold32014 Processing chromosome scaffold32014 INFO [2014-07-02 15:08:13,835] [Preprocessor.java:241] [main] Processing chromosome scaffold32024 Processing chromosome scaffold32024 INFO [2014-07-02 15:08:13,842] [Preprocessor.java:241] [main] Processing chromosome scaffold32030 Processing chromosome scaffold32030 INFO [2014-07-02 15:08:13,850] [Preprocessor.java:241] [main] Processing chromosome scaffold32048 Processing chromosome scaffold32048 INFO [2014-07-02 15:08:13,858] [Preprocessor.java:241] [main] Processing chromosome scaffold32064 Processing chromosome scaffold32064 INFO [2014-07-02 15:08:13,892] [Preprocessor.java:241] [main] Processing chromosome scaffold32086 Processing chromosome scaffold32086 INFO [2014-07-02 15:08:13,901] [Preprocessor.java:241] [main] Processing chromosome scaffold32094 Processing chromosome scaffold32094 INFO [2014-07-02 15:08:13,908] [Preprocessor.java:241] [main] Processing chromosome scaffold32096 Processing chromosome scaffold32096 INFO [2014-07-02 15:08:13,913] [Preprocessor.java:241] [main] Processing chromosome scaffold321 Processing chromosome scaffold321 INFO [2014-07-02 15:08:16,600] [Preprocessor.java:241] [main] Processing chromosome scaffold32102 Processing chromosome scaffold32102 INFO [2014-07-02 15:08:16,633] [Preprocessor.java:241] [main] Processing chromosome scaffold32118 Processing chromosome scaffold32118 INFO [2014-07-02 15:08:16,647] [Preprocessor.java:241] [main] Processing chromosome scaffold32120 Processing chromosome scaffold32120 INFO [2014-07-02 15:08:16,656] [Preprocessor.java:241] [main] Processing chromosome scaffold32140 Processing chromosome scaffold32140 INFO [2014-07-02 15:08:16,674] [Preprocessor.java:241] [main] Processing chromosome scaffold32142 Processing chromosome scaffold32142 INFO [2014-07-02 15:08:16,679] [Preprocessor.java:241] [main] Processing chromosome scaffold32160 Processing chromosome scaffold32160 INFO [2014-07-02 15:08:16,698] [Preprocessor.java:241] [main] Processing chromosome scaffold32172 Processing chromosome scaffold32172 INFO [2014-07-02 15:08:16,702] [Preprocessor.java:241] [main] Processing chromosome scaffold32178 Processing chromosome scaffold32178 INFO [2014-07-02 15:08:16,724] [Preprocessor.java:241] [main] Processing chromosome scaffold32180 Processing chromosome scaffold32180 INFO [2014-07-02 15:08:16,733] [Preprocessor.java:241] [main] Processing chromosome scaffold32192 Processing chromosome scaffold32192 INFO [2014-07-02 15:08:16,745] [Preprocessor.java:241] [main] Processing chromosome scaffold322 Processing chromosome scaffold322 INFO [2014-07-02 15:08:16,780] [Preprocessor.java:241] [main] Processing chromosome scaffold32202 Processing chromosome scaffold32202 INFO [2014-07-02 15:08:16,814] [Preprocessor.java:241] [main] Processing chromosome scaffold32230 Processing chromosome scaffold32230 INFO [2014-07-02 15:08:16,851] [Preprocessor.java:241] [main] Processing chromosome scaffold32252 Processing chromosome scaffold32252 INFO [2014-07-02 15:08:16,874] [Preprocessor.java:241] [main] Processing chromosome scaffold32258 Processing chromosome scaffold32258 INFO [2014-07-02 15:08:16,893] [Preprocessor.java:241] [main] Processing chromosome scaffold32282 Processing chromosome scaffold32282 INFO [2014-07-02 15:08:16,898] [Preprocessor.java:241] [main] Processing chromosome scaffold323 Processing chromosome scaffold323 INFO [2014-07-02 15:08:16,920] [Preprocessor.java:241] [main] Processing chromosome scaffold32300 Processing chromosome scaffold32300 INFO [2014-07-02 15:08:16,956] [Preprocessor.java:241] [main] Processing chromosome scaffold32330 Processing chromosome scaffold32330 INFO [2014-07-02 15:08:16,969] [Preprocessor.java:241] [main] Processing chromosome scaffold32342 Processing chromosome scaffold32342 INFO [2014-07-02 15:08:16,972] [Preprocessor.java:241] [main] Processing chromosome scaffold32346 Processing chromosome scaffold32346 INFO [2014-07-02 15:08:17,000] [Preprocessor.java:241] [main] Processing chromosome scaffold32356 Processing chromosome scaffold32356 INFO [2014-07-02 15:08:17,034] [Preprocessor.java:241] [main] Processing chromosome scaffold324 Processing chromosome scaffold324 INFO [2014-07-02 15:08:17,089] [Preprocessor.java:241] [main] Processing chromosome scaffold32410 Processing chromosome scaffold32410 INFO [2014-07-02 15:08:17,120] [Preprocessor.java:241] [main] Processing chromosome scaffold32452 Processing chromosome scaffold32452 INFO [2014-07-02 15:08:17,125] [Preprocessor.java:241] [main] Processing chromosome scaffold32470 Processing chromosome scaffold32470 INFO [2014-07-02 15:08:17,132] [Preprocessor.java:241] [main] Processing chromosome scaffold32488 Processing chromosome scaffold32488 INFO [2014-07-02 15:08:17,149] [Preprocessor.java:241] [main] Processing chromosome scaffold32494 Processing chromosome scaffold32494 INFO [2014-07-02 15:08:17,158] [Preprocessor.java:241] [main] Processing chromosome scaffold32520 Processing chromosome scaffold32520 INFO [2014-07-02 15:08:17,178] [Preprocessor.java:241] [main] Processing chromosome scaffold32526 Processing chromosome scaffold32526 INFO [2014-07-02 15:08:17,202] [Preprocessor.java:241] [main] Processing chromosome scaffold32530 Processing chromosome scaffold32530 INFO [2014-07-02 15:08:17,213] [Preprocessor.java:241] [main] Processing chromosome scaffold32546 Processing chromosome scaffold32546 INFO [2014-07-02 15:08:17,224] [Preprocessor.java:241] [main] Processing chromosome scaffold32550 Processing chromosome scaffold32550 INFO [2014-07-02 15:08:17,226] [Preprocessor.java:241] [main] Processing chromosome scaffold32566 Processing chromosome scaffold32566 INFO [2014-07-02 15:08:17,238] [Preprocessor.java:241] [main] Processing chromosome scaffold32586 Processing chromosome scaffold32586 INFO [2014-07-02 15:08:17,241] [Preprocessor.java:241] [main] Processing chromosome scaffold326 Processing chromosome scaffold326 INFO [2014-07-02 15:08:17,267] [Preprocessor.java:241] [main] Processing chromosome scaffold32604 Processing chromosome scaffold32604 INFO [2014-07-02 15:08:17,274] [Preprocessor.java:241] [main] Processing chromosome scaffold32618 Processing chromosome scaffold32618 INFO [2014-07-02 15:08:17,277] [Preprocessor.java:241] [main] Processing chromosome scaffold32624 Processing chromosome scaffold32624 INFO [2014-07-02 15:08:17,281] [Preprocessor.java:241] [main] Processing chromosome scaffold32632 Processing chromosome scaffold32632 INFO [2014-07-02 15:08:17,290] [Preprocessor.java:241] [main] Processing chromosome scaffold32642 Processing chromosome scaffold32642 INFO [2014-07-02 15:08:17,304] [Preprocessor.java:241] [main] Processing chromosome scaffold32646 Processing chromosome scaffold32646 INFO [2014-07-02 15:08:17,325] [Preprocessor.java:241] [main] Processing chromosome scaffold32666 Processing chromosome scaffold32666 INFO [2014-07-02 15:08:17,331] [Preprocessor.java:241] [main] Processing chromosome scaffold32686 Processing chromosome scaffold32686 INFO [2014-07-02 15:08:17,368] [Preprocessor.java:241] [main] Processing chromosome scaffold32688 Processing chromosome scaffold32688 INFO [2014-07-02 15:08:17,406] [Preprocessor.java:241] [main] Processing chromosome scaffold327 Processing chromosome scaffold327 INFO [2014-07-02 15:08:17,411] [Preprocessor.java:241] [main] Processing chromosome scaffold32708 Processing chromosome scaffold32708 INFO [2014-07-02 15:08:17,442] [Preprocessor.java:241] [main] Processing chromosome scaffold32718 Processing chromosome scaffold32718 INFO [2014-07-02 15:08:17,448] [Preprocessor.java:241] [main] Processing chromosome scaffold32726 Processing chromosome scaffold32726 INFO [2014-07-02 15:08:17,475] [Preprocessor.java:241] [main] Processing chromosome scaffold32754 Processing chromosome scaffold32754 INFO [2014-07-02 15:08:17,483] [Preprocessor.java:241] [main] Processing chromosome scaffold32768 Processing chromosome scaffold32768 INFO [2014-07-02 15:08:17,499] [Preprocessor.java:241] [main] Processing chromosome scaffold32770 Processing chromosome scaffold32770 INFO [2014-07-02 15:08:17,511] [Preprocessor.java:241] [main] Processing chromosome scaffold32782 Processing chromosome scaffold32782 INFO [2014-07-02 15:08:17,518] [Preprocessor.java:241] [main] Processing chromosome scaffold32786 Processing chromosome scaffold32786 INFO [2014-07-02 15:08:17,535] [Preprocessor.java:241] [main] Processing chromosome scaffold328 Processing chromosome scaffold328 INFO [2014-07-02 15:08:17,549] [Preprocessor.java:241] [main] Processing chromosome scaffold32822 Processing chromosome scaffold32822 INFO [2014-07-02 15:08:17,553] [Preprocessor.java:241] [main] Processing chromosome scaffold32844 Processing chromosome scaffold32844 INFO [2014-07-02 15:08:17,557] [Preprocessor.java:241] [main] Processing chromosome scaffold32850 Processing chromosome scaffold32850 INFO [2014-07-02 15:08:17,595] [Preprocessor.java:241] [main] Processing chromosome scaffold32864 Processing chromosome scaffold32864 INFO [2014-07-02 15:08:17,641] [Preprocessor.java:241] [main] Processing chromosome scaffold32894 Processing chromosome scaffold32894 INFO [2014-07-02 15:08:17,648] [Preprocessor.java:241] [main] Processing chromosome scaffold329 Processing chromosome scaffold329 INFO [2014-07-02 15:08:17,684] [Preprocessor.java:241] [main] Processing chromosome scaffold32900 Processing chromosome scaffold32900 INFO [2014-07-02 15:08:17,697] [Preprocessor.java:241] [main] Processing chromosome scaffold32912 Processing chromosome scaffold32912 INFO [2014-07-02 15:08:17,714] [Preprocessor.java:241] [main] Processing chromosome scaffold32922 Processing chromosome scaffold32922 INFO [2014-07-02 15:08:17,746] [Preprocessor.java:241] [main] Processing chromosome scaffold32956 Processing chromosome scaffold32956 INFO [2014-07-02 15:08:17,758] [Preprocessor.java:241] [main] Processing chromosome scaffold32970 Processing chromosome scaffold32970 INFO [2014-07-02 15:08:17,775] [Preprocessor.java:241] [main] Processing chromosome scaffold330 Processing chromosome scaffold330 INFO [2014-07-02 15:08:17,818] [Preprocessor.java:241] [main] Processing chromosome scaffold33010 Processing chromosome scaffold33010 INFO [2014-07-02 15:08:17,837] [Preprocessor.java:241] [main] Processing chromosome scaffold33026 Processing chromosome scaffold33026 INFO [2014-07-02 15:08:17,843] [Preprocessor.java:241] [main] Processing chromosome scaffold33030 Processing chromosome scaffold33030 INFO [2014-07-02 15:08:17,863] [Preprocessor.java:241] [main] Processing chromosome scaffold33032 Processing chromosome scaffold33032 INFO [2014-07-02 15:08:17,891] [Preprocessor.java:241] [main] Processing chromosome scaffold33036 Processing chromosome scaffold33036 INFO [2014-07-02 15:08:17,906] [Preprocessor.java:241] [main] Processing chromosome scaffold33042 Processing chromosome scaffold33042 INFO [2014-07-02 15:08:17,922] [Preprocessor.java:241] [main] Processing chromosome scaffold33046 Processing chromosome scaffold33046 INFO [2014-07-02 15:08:17,942] [Preprocessor.java:241] [main] Processing chromosome scaffold33048 Processing chromosome scaffold33048 INFO [2014-07-02 15:08:17,948] [Preprocessor.java:241] [main] Processing chromosome scaffold33050 Processing chromosome scaffold33050 INFO [2014-07-02 15:08:17,969] [Preprocessor.java:241] [main] Processing chromosome scaffold33052 Processing chromosome scaffold33052 INFO [2014-07-02 15:08:17,979] [Preprocessor.java:241] [main] Processing chromosome scaffold33056 Processing chromosome scaffold33056 INFO [2014-07-02 15:08:17,995] [Preprocessor.java:241] [main] Processing chromosome scaffold33064 Processing chromosome scaffold33064 INFO [2014-07-02 15:08:18,006] [Preprocessor.java:241] [main] Processing chromosome scaffold33066 Processing chromosome scaffold33066 INFO [2014-07-02 15:08:18,051] [Preprocessor.java:241] [main] Processing chromosome scaffold33072 Processing chromosome scaffold33072 INFO [2014-07-02 15:08:18,056] [Preprocessor.java:241] [main] Processing chromosome scaffold33074 Processing chromosome scaffold33074 INFO [2014-07-02 15:08:18,071] [Preprocessor.java:241] [main] Processing chromosome scaffold33090 Processing chromosome scaffold33090 INFO [2014-07-02 15:08:18,074] [Preprocessor.java:241] [main] Processing chromosome scaffold33094 Processing chromosome scaffold33094 INFO [2014-07-02 15:08:18,079] [Preprocessor.java:241] [main] Processing chromosome scaffold331 Processing chromosome scaffold331 INFO [2014-07-02 15:08:18,095] [Preprocessor.java:241] [main] Processing chromosome scaffold33108 Processing chromosome scaffold33108 INFO [2014-07-02 15:08:18,125] [Preprocessor.java:241] [main] Processing chromosome scaffold33118 Processing chromosome scaffold33118 INFO [2014-07-02 15:08:18,139] [Preprocessor.java:241] [main] Processing chromosome scaffold33122 Processing chromosome scaffold33122 INFO [2014-07-02 15:08:18,157] [Preprocessor.java:241] [main] Processing chromosome scaffold33132 Processing chromosome scaffold33132 INFO [2014-07-02 15:08:18,198] [Preprocessor.java:241] [main] Processing chromosome scaffold33134 Processing chromosome scaffold33134 INFO [2014-07-02 15:08:18,247] [Preprocessor.java:241] [main] Processing chromosome scaffold33146 Processing chromosome scaffold33146 INFO [2014-07-02 15:08:18,279] [Preprocessor.java:241] [main] Processing chromosome scaffold33154 Processing chromosome scaffold33154 INFO [2014-07-02 15:08:18,291] [Preprocessor.java:241] [main] Processing chromosome scaffold33158 Processing chromosome scaffold33158 INFO [2014-07-02 15:08:18,303] [Preprocessor.java:241] [main] Processing chromosome scaffold33164 Processing chromosome scaffold33164 INFO [2014-07-02 15:08:18,325] [Preprocessor.java:241] [main] Processing chromosome scaffold33178 Processing chromosome scaffold33178 INFO [2014-07-02 15:08:18,343] [Preprocessor.java:241] [main] Processing chromosome scaffold33184 Processing chromosome scaffold33184 INFO [2014-07-02 15:08:18,445] [Preprocessor.java:241] [main] Processing chromosome scaffold33192 Processing chromosome scaffold33192 INFO [2014-07-02 15:08:18,494] [Preprocessor.java:241] [main] Processing chromosome scaffold332 Processing chromosome scaffold332 INFO [2014-07-02 15:08:18,553] [Preprocessor.java:241] [main] Processing chromosome scaffold33210 Processing chromosome scaffold33210 INFO [2014-07-02 15:08:18,557] [Preprocessor.java:241] [main] Processing chromosome scaffold33224 Processing chromosome scaffold33224 INFO [2014-07-02 15:08:18,562] [Preprocessor.java:241] [main] Processing chromosome scaffold33238 Processing chromosome scaffold33238 INFO [2014-07-02 15:08:18,566] [Preprocessor.java:241] [main] Processing chromosome scaffold33242 Processing chromosome scaffold33242 INFO [2014-07-02 15:08:18,590] [Preprocessor.java:241] [main] Processing chromosome scaffold33248 Processing chromosome scaffold33248 INFO [2014-07-02 15:08:18,603] [Preprocessor.java:241] [main] Processing chromosome scaffold33254 Processing chromosome scaffold33254 INFO [2014-07-02 15:08:18,636] [Preprocessor.java:241] [main] Processing chromosome scaffold33272 Processing chromosome scaffold33272 INFO [2014-07-02 15:08:18,638] [Preprocessor.java:241] [main] Processing chromosome scaffold333 Processing chromosome scaffold333 INFO [2014-07-02 15:08:18,649] [Preprocessor.java:241] [main] Processing chromosome scaffold33304 Processing chromosome scaffold33304 INFO [2014-07-02 15:08:18,664] [Preprocessor.java:241] [main] Processing chromosome scaffold33340 Processing chromosome scaffold33340 INFO [2014-07-02 15:08:18,678] [Preprocessor.java:241] [main] Processing chromosome scaffold33342 Processing chromosome scaffold33342 INFO [2014-07-02 15:08:18,688] [Preprocessor.java:241] [main] Processing chromosome scaffold33346 Processing chromosome scaffold33346 INFO [2014-07-02 15:08:18,713] [Preprocessor.java:241] [main] Processing chromosome scaffold33352 Processing chromosome scaffold33352 INFO [2014-07-02 15:08:18,761] [Preprocessor.java:241] [main] Processing chromosome scaffold33360 Processing chromosome scaffold33360 INFO [2014-07-02 15:08:18,822] [Preprocessor.java:241] [main] Processing chromosome scaffold33364 Processing chromosome scaffold33364 INFO [2014-07-02 15:08:18,831] [Preprocessor.java:241] [main] Processing chromosome scaffold33382 Processing chromosome scaffold33382 INFO [2014-07-02 15:08:18,852] [Preprocessor.java:241] [main] Processing chromosome scaffold33390 Processing chromosome scaffold33390 INFO [2014-07-02 15:08:18,879] [Preprocessor.java:241] [main] Processing chromosome scaffold334 Processing chromosome scaffold334 INFO [2014-07-02 15:08:19,026] [Preprocessor.java:241] [main] Processing chromosome scaffold33412 Processing chromosome scaffold33412 INFO [2014-07-02 15:08:19,032] [Preprocessor.java:241] [main] Processing chromosome scaffold33414 Processing chromosome scaffold33414 INFO [2014-07-02 15:08:19,041] [Preprocessor.java:241] [main] Processing chromosome scaffold33424 Processing chromosome scaffold33424 INFO [2014-07-02 15:08:19,061] [Preprocessor.java:241] [main] Processing chromosome scaffold33428 Processing chromosome scaffold33428 INFO [2014-07-02 15:08:19,065] [Preprocessor.java:241] [main] Processing chromosome scaffold33432 Processing chromosome scaffold33432 INFO [2014-07-02 15:08:19,071] [Preprocessor.java:241] [main] Processing chromosome scaffold33454 Processing chromosome scaffold33454 INFO [2014-07-02 15:08:19,096] [Preprocessor.java:241] [main] Processing chromosome scaffold33462 Processing chromosome scaffold33462 INFO [2014-07-02 15:08:19,102] [Preprocessor.java:241] [main] Processing chromosome scaffold33466 Processing chromosome scaffold33466 INFO [2014-07-02 15:08:19,113] [Preprocessor.java:241] [main] Processing chromosome scaffold33486 Processing chromosome scaffold33486 INFO [2014-07-02 15:08:19,125] [Preprocessor.java:241] [main] Processing chromosome scaffold33498 Processing chromosome scaffold33498 INFO [2014-07-02 15:08:19,151] [Preprocessor.java:241] [main] Processing chromosome scaffold335 Processing chromosome scaffold335 INFO [2014-07-02 15:08:19,671] [Preprocessor.java:241] [main] Processing chromosome scaffold33500 Processing chromosome scaffold33500 INFO [2014-07-02 15:08:19,697] [Preprocessor.java:241] [main] Processing chromosome scaffold33502 Processing chromosome scaffold33502 INFO [2014-07-02 15:08:19,702] [Preprocessor.java:241] [main] Processing chromosome scaffold33512 Processing chromosome scaffold33512 INFO [2014-07-02 15:08:19,711] [Preprocessor.java:241] [main] Processing chromosome scaffold33530 Processing chromosome scaffold33530 INFO [2014-07-02 15:08:19,732] [Preprocessor.java:241] [main] Processing chromosome scaffold33554 Processing chromosome scaffold33554 INFO [2014-07-02 15:08:19,740] [Preprocessor.java:241] [main] Processing chromosome scaffold33578 Processing chromosome scaffold33578 INFO [2014-07-02 15:08:19,743] [Preprocessor.java:241] [main] Processing chromosome scaffold33584 Processing chromosome scaffold33584 INFO [2014-07-02 15:08:19,757] [Preprocessor.java:241] [main] Processing chromosome scaffold33588 Processing chromosome scaffold33588 INFO [2014-07-02 15:08:19,770] [Preprocessor.java:241] [main] Processing chromosome scaffold33590 Processing chromosome scaffold33590 INFO [2014-07-02 15:08:19,794] [Preprocessor.java:241] [main] Processing chromosome scaffold33594 Processing chromosome scaffold33594 INFO [2014-07-02 15:08:19,986] [Preprocessor.java:241] [main] Processing chromosome scaffold336 Processing chromosome scaffold336 .INFO [2014-07-02 15:08:20,092] [Preprocessor.java:241] [main] Processing chromosome scaffold33610 Processing chromosome scaffold33610 INFO [2014-07-02 15:08:20,098] [Preprocessor.java:241] [main] Processing chromosome scaffold33618 Processing chromosome scaffold33618 INFO [2014-07-02 15:08:20,108] [Preprocessor.java:241] [main] Processing chromosome scaffold33628 Processing chromosome scaffold33628 INFO [2014-07-02 15:08:20,123] [Preprocessor.java:241] [main] Processing chromosome scaffold33638 Processing chromosome scaffold33638 INFO [2014-07-02 15:08:20,164] [Preprocessor.java:241] [main] Processing chromosome scaffold33640 Processing chromosome scaffold33640 INFO [2014-07-02 15:08:20,172] [Preprocessor.java:241] [main] Processing chromosome scaffold33656 Processing chromosome scaffold33656 INFO [2014-07-02 15:08:20,187] [Preprocessor.java:241] [main] Processing chromosome scaffold33684 Processing chromosome scaffold33684 INFO [2014-07-02 15:08:20,215] [Preprocessor.java:241] [main] Processing chromosome scaffold337 Processing chromosome scaffold337 INFO [2014-07-02 15:08:20,338] [Preprocessor.java:241] [main] Processing chromosome scaffold33704 Processing chromosome scaffold33704 INFO [2014-07-02 15:08:20,355] [Preprocessor.java:241] [main] Processing chromosome scaffold33706 Processing chromosome scaffold33706 INFO [2014-07-02 15:08:20,359] [Preprocessor.java:241] [main] Processing chromosome scaffold33724 Processing chromosome scaffold33724 INFO [2014-07-02 15:08:20,374] [Preprocessor.java:241] [main] Processing chromosome scaffold33732 Processing chromosome scaffold33732 INFO [2014-07-02 15:08:20,421] [Preprocessor.java:241] [main] Processing chromosome scaffold33736 Processing chromosome scaffold33736 INFO [2014-07-02 15:08:20,431] [Preprocessor.java:241] [main] Processing chromosome scaffold33742 Processing chromosome scaffold33742 INFO [2014-07-02 15:08:20,470] [Preprocessor.java:241] [main] Processing chromosome scaffold33754 Processing chromosome scaffold33754 INFO [2014-07-02 15:08:20,477] [Preprocessor.java:241] [main] Processing chromosome scaffold338 Processing chromosome scaffold338 INFO [2014-07-02 15:08:20,522] [Preprocessor.java:241] [main] Processing chromosome scaffold33806 Processing chromosome scaffold33806 INFO [2014-07-02 15:08:20,538] [Preprocessor.java:241] [main] Processing chromosome scaffold33820 Processing chromosome scaffold33820 INFO [2014-07-02 15:08:20,543] [Preprocessor.java:241] [main] Processing chromosome scaffold33822 Processing chromosome scaffold33822 INFO [2014-07-02 15:08:20,566] [Preprocessor.java:241] [main] Processing chromosome scaffold33832 Processing chromosome scaffold33832 INFO [2014-07-02 15:08:20,578] [Preprocessor.java:241] [main] Processing chromosome scaffold33840 Processing chromosome scaffold33840 INFO [2014-07-02 15:08:20,616] [Preprocessor.java:241] [main] Processing chromosome scaffold33842 Processing chromosome scaffold33842 INFO [2014-07-02 15:08:20,630] [Preprocessor.java:241] [main] Processing chromosome scaffold33846 Processing chromosome scaffold33846 INFO [2014-07-02 15:08:20,634] [Preprocessor.java:241] [main] Processing chromosome scaffold33848 Processing chromosome scaffold33848 INFO [2014-07-02 15:08:20,647] [Preprocessor.java:241] [main] Processing chromosome scaffold33850 Processing chromosome scaffold33850 INFO [2014-07-02 15:08:20,655] [Preprocessor.java:241] [main] Processing chromosome scaffold33876 Processing chromosome scaffold33876 INFO [2014-07-02 15:08:20,657] [Preprocessor.java:241] [main] Processing chromosome scaffold339 Processing chromosome scaffold339 INFO [2014-07-02 15:08:20,690] [Preprocessor.java:241] [main] Processing chromosome scaffold33902 Processing chromosome scaffold33902 INFO [2014-07-02 15:08:20,704] [Preprocessor.java:241] [main] Processing chromosome scaffold33904 Processing chromosome scaffold33904 INFO [2014-07-02 15:08:20,722] [Preprocessor.java:241] [main] Processing chromosome scaffold33910 Processing chromosome scaffold33910 INFO [2014-07-02 15:08:20,733] [Preprocessor.java:241] [main] Processing chromosome scaffold33912 Processing chromosome scaffold33912 INFO [2014-07-02 15:08:20,739] [Preprocessor.java:241] [main] Processing chromosome scaffold33922 Processing chromosome scaffold33922 INFO [2014-07-02 15:08:20,744] [Preprocessor.java:241] [main] Processing chromosome scaffold33924 Processing chromosome scaffold33924 INFO [2014-07-02 15:08:21,100] [Preprocessor.java:241] [main] Processing chromosome scaffold33934 Processing chromosome scaffold33934 INFO [2014-07-02 15:08:21,119] [Preprocessor.java:241] [main] Processing chromosome scaffold33944 Processing chromosome scaffold33944 INFO [2014-07-02 15:08:21,143] [Preprocessor.java:241] [main] Processing chromosome scaffold33958 Processing chromosome scaffold33958 INFO [2014-07-02 15:08:21,153] [Preprocessor.java:241] [main] Processing chromosome scaffold33960 Processing chromosome scaffold33960 INFO [2014-07-02 15:08:21,173] [Preprocessor.java:241] [main] Processing chromosome scaffold33980 Processing chromosome scaffold33980 INFO [2014-07-02 15:08:21,217] [Preprocessor.java:241] [main] Processing chromosome scaffold33992 Processing chromosome scaffold33992 INFO [2014-07-02 15:08:21,250] [Preprocessor.java:241] [main] Processing chromosome scaffold34 Processing chromosome scaffold34 INFO [2014-07-02 15:08:26,466] [Preprocessor.java:241] [main] Processing chromosome scaffold340 Processing chromosome scaffold340 INFO [2014-07-02 15:08:26,543] [Preprocessor.java:241] [main] Processing chromosome scaffold34000 Processing chromosome scaffold34000 INFO [2014-07-02 15:08:26,551] [Preprocessor.java:241] [main] Processing chromosome scaffold34008 Processing chromosome scaffold34008 INFO [2014-07-02 15:08:26,573] [Preprocessor.java:241] [main] Processing chromosome scaffold34016 Processing chromosome scaffold34016 INFO [2014-07-02 15:08:26,581] [Preprocessor.java:241] [main] Processing chromosome scaffold34018 Processing chromosome scaffold34018 INFO [2014-07-02 15:08:26,631] [Preprocessor.java:241] [main] Processing chromosome scaffold34020 Processing chromosome scaffold34020 INFO [2014-07-02 15:08:26,639] [Preprocessor.java:241] [main] Processing chromosome scaffold34026 Processing chromosome scaffold34026 INFO [2014-07-02 15:08:26,672] [Preprocessor.java:241] [main] Processing chromosome scaffold34032 Processing chromosome scaffold34032 INFO [2014-07-02 15:08:26,693] [Preprocessor.java:241] [main] Processing chromosome scaffold34048 Processing chromosome scaffold34048 INFO [2014-07-02 15:08:26,720] [Preprocessor.java:241] [main] Processing chromosome scaffold34052 Processing chromosome scaffold34052 INFO [2014-07-02 15:08:26,739] [Preprocessor.java:241] [main] Processing chromosome scaffold34058 Processing chromosome scaffold34058 INFO [2014-07-02 15:08:26,779] [Preprocessor.java:241] [main] Processing chromosome scaffold34064 Processing chromosome scaffold34064 INFO [2014-07-02 15:08:26,786] [Preprocessor.java:241] [main] Processing chromosome scaffold34084 Processing chromosome scaffold34084 INFO [2014-07-02 15:08:26,792] [Preprocessor.java:241] [main] Processing chromosome scaffold34088 Processing chromosome scaffold34088 INFO [2014-07-02 15:08:26,846] [Preprocessor.java:241] [main] Processing chromosome scaffold34098 Processing chromosome scaffold34098 INFO [2014-07-02 15:08:26,869] [Preprocessor.java:241] [main] Processing chromosome scaffold341 Processing chromosome scaffold341 INFO [2014-07-02 15:08:26,924] [Preprocessor.java:241] [main] Processing chromosome scaffold34106 Processing chromosome scaffold34106 INFO [2014-07-02 15:08:26,929] [Preprocessor.java:241] [main] Processing chromosome scaffold34124 Processing chromosome scaffold34124 INFO [2014-07-02 15:08:26,939] [Preprocessor.java:241] [main] Processing chromosome scaffold34144 Processing chromosome scaffold34144 INFO [2014-07-02 15:08:26,945] [Preprocessor.java:241] [main] Processing chromosome scaffold34168 Processing chromosome scaffold34168 INFO [2014-07-02 15:08:26,950] [Preprocessor.java:241] [main] Processing chromosome scaffold34182 Processing chromosome scaffold34182 INFO [2014-07-02 15:08:26,969] [Preprocessor.java:241] [main] Processing chromosome scaffold34192 Processing chromosome scaffold34192 INFO [2014-07-02 15:08:27,002] [Preprocessor.java:241] [main] Processing chromosome scaffold342 Processing chromosome scaffold342 INFO [2014-07-02 15:08:27,025] [Preprocessor.java:241] [main] Processing chromosome scaffold34202 Processing chromosome scaffold34202 INFO [2014-07-02 15:08:27,071] [Preprocessor.java:241] [main] Processing chromosome scaffold34222 Processing chromosome scaffold34222 INFO [2014-07-02 15:08:27,076] [Preprocessor.java:241] [main] Processing chromosome scaffold34224 Processing chromosome scaffold34224 INFO [2014-07-02 15:08:27,081] [Preprocessor.java:241] [main] Processing chromosome scaffold34236 Processing chromosome scaffold34236 INFO [2014-07-02 15:08:27,087] [Preprocessor.java:241] [main] Processing chromosome scaffold34238 Processing chromosome scaffold34238 INFO [2014-07-02 15:08:27,142] [Preprocessor.java:241] [main] Processing chromosome scaffold34244 Processing chromosome scaffold34244 INFO [2014-07-02 15:08:27,168] [Preprocessor.java:241] [main] Processing chromosome scaffold34266 Processing chromosome scaffold34266 INFO [2014-07-02 15:08:27,207] [Preprocessor.java:241] [main] Processing chromosome scaffold34278 Processing chromosome scaffold34278 INFO [2014-07-02 15:08:27,232] [Preprocessor.java:241] [main] Processing chromosome scaffold34282 Processing chromosome scaffold34282 INFO [2014-07-02 15:08:27,253] [Preprocessor.java:241] [main] Processing chromosome scaffold34292 Processing chromosome scaffold34292 INFO [2014-07-02 15:08:27,280] [Preprocessor.java:241] [main] Processing chromosome scaffold34298 Processing chromosome scaffold34298 INFO [2014-07-02 15:08:27,283] [Preprocessor.java:241] [main] Processing chromosome scaffold343 Processing chromosome scaffold343 INFO [2014-07-02 15:08:27,353] [Preprocessor.java:241] [main] Processing chromosome scaffold34302 Processing chromosome scaffold34302 INFO [2014-07-02 15:08:27,364] [Preprocessor.java:241] [main] Processing chromosome scaffold34308 Processing chromosome scaffold34308 INFO [2014-07-02 15:08:27,367] [Preprocessor.java:241] [main] Processing chromosome scaffold34314 Processing chromosome scaffold34314 INFO [2014-07-02 15:08:27,381] [Preprocessor.java:241] [main] Processing chromosome scaffold34348 Processing chromosome scaffold34348 INFO [2014-07-02 15:08:27,387] [Preprocessor.java:241] [main] Processing chromosome scaffold34350 Processing chromosome scaffold34350 INFO [2014-07-02 15:08:27,390] [Preprocessor.java:241] [main] Processing chromosome scaffold34356 Processing chromosome scaffold34356 INFO [2014-07-02 15:08:27,395] [Preprocessor.java:241] [main] Processing chromosome scaffold34364 Processing chromosome scaffold34364 INFO [2014-07-02 15:08:27,417] [Preprocessor.java:241] [main] Processing chromosome scaffold34366 Processing chromosome scaffold34366 INFO [2014-07-02 15:08:27,456] [Preprocessor.java:241] [main] Processing chromosome scaffold34380 Processing chromosome scaffold34380 INFO [2014-07-02 15:08:27,490] [Preprocessor.java:241] [main] Processing chromosome scaffold34388 Processing chromosome scaffold34388 INFO [2014-07-02 15:08:27,494] [Preprocessor.java:241] [main] Processing chromosome scaffold344 Processing chromosome scaffold344 INFO [2014-07-02 15:08:27,509] [Preprocessor.java:241] [main] Processing chromosome scaffold34420 Processing chromosome scaffold34420 INFO [2014-07-02 15:08:27,521] [Preprocessor.java:241] [main] Processing chromosome scaffold34438 Processing chromosome scaffold34438 INFO [2014-07-02 15:08:27,533] [Preprocessor.java:241] [main] Processing chromosome scaffold34442 Processing chromosome scaffold34442 INFO [2014-07-02 15:08:27,537] [Preprocessor.java:241] [main] Processing chromosome scaffold34476 Processing chromosome scaffold34476 INFO [2014-07-02 15:08:27,600] [Preprocessor.java:241] [main] Processing chromosome scaffold34510 Processing chromosome scaffold34510 INFO [2014-07-02 15:08:27,611] [Preprocessor.java:241] [main] Processing chromosome scaffold34528 Processing chromosome scaffold34528 INFO [2014-07-02 15:08:27,614] [Preprocessor.java:241] [main] Processing chromosome scaffold34534 Processing chromosome scaffold34534 INFO [2014-07-02 15:08:27,620] [Preprocessor.java:241] [main] Processing chromosome scaffold34542 Processing chromosome scaffold34542 INFO [2014-07-02 15:08:27,630] [Preprocessor.java:241] [main] Processing chromosome scaffold34544 Processing chromosome scaffold34544 INFO [2014-07-02 15:08:27,667] [Preprocessor.java:241] [main] Processing chromosome scaffold34548 Processing chromosome scaffold34548 INFO [2014-07-02 15:08:27,672] [Preprocessor.java:241] [main] Processing chromosome scaffold34572 Processing chromosome scaffold34572 INFO [2014-07-02 15:08:27,698] [Preprocessor.java:241] [main] Processing chromosome scaffold34580 Processing chromosome scaffold34580 INFO [2014-07-02 15:08:27,735] [Preprocessor.java:241] [main] Processing chromosome scaffold34582 Processing chromosome scaffold34582 INFO [2014-07-02 15:08:27,745] [Preprocessor.java:241] [main] Processing chromosome scaffold34594 Processing chromosome scaffold34594 INFO [2014-07-02 15:08:27,790] [Preprocessor.java:241] [main] Processing chromosome scaffold34596 Processing chromosome scaffold34596 INFO [2014-07-02 15:08:27,846] [Preprocessor.java:241] [main] Processing chromosome scaffold34610 Processing chromosome scaffold34610 INFO [2014-07-02 15:08:27,857] [Preprocessor.java:241] [main] Processing chromosome scaffold34652 Processing chromosome scaffold34652 INFO [2014-07-02 15:08:27,884] [Preprocessor.java:241] [main] Processing chromosome scaffold34682 Processing chromosome scaffold34682 INFO [2014-07-02 15:08:27,913] [Preprocessor.java:241] [main] Processing chromosome scaffold34684 Processing chromosome scaffold34684 INFO [2014-07-02 15:08:27,925] [Preprocessor.java:241] [main] Processing chromosome scaffold34694 Processing chromosome scaffold34694 INFO [2014-07-02 15:08:27,947] [Preprocessor.java:241] [main] Processing chromosome scaffold34696 Processing chromosome scaffold34696 INFO [2014-07-02 15:08:27,976] [Preprocessor.java:241] [main] Processing chromosome scaffold347 Processing chromosome scaffold347 INFO [2014-07-02 15:08:28,065] [Preprocessor.java:241] [main] Processing chromosome scaffold34700 Processing chromosome scaffold34700 INFO [2014-07-02 15:08:28,092] [Preprocessor.java:241] [main] Processing chromosome scaffold34710 Processing chromosome scaffold34710 INFO [2014-07-02 15:08:28,127] [Preprocessor.java:241] [main] Processing chromosome scaffold34714 Processing chromosome scaffold34714 INFO [2014-07-02 15:08:28,177] [Preprocessor.java:241] [main] Processing chromosome scaffold34724 Processing chromosome scaffold34724 INFO [2014-07-02 15:08:28,200] [Preprocessor.java:241] [main] Processing chromosome scaffold34732 Processing chromosome scaffold34732 INFO [2014-07-02 15:08:28,236] [Preprocessor.java:241] [main] Processing chromosome scaffold34738 Processing chromosome scaffold34738 INFO [2014-07-02 15:08:28,265] [Preprocessor.java:241] [main] Processing chromosome scaffold34740 Processing chromosome scaffold34740 INFO [2014-07-02 15:08:28,282] [Preprocessor.java:241] [main] Processing chromosome scaffold34742 Processing chromosome scaffold34742 INFO [2014-07-02 15:08:28,325] [Preprocessor.java:241] [main] Processing chromosome scaffold34756 Processing chromosome scaffold34756 INFO [2014-07-02 15:08:28,357] [Preprocessor.java:241] [main] Processing chromosome scaffold34780 Processing chromosome scaffold34780 INFO [2014-07-02 15:08:28,384] [Preprocessor.java:241] [main] Processing chromosome scaffold34794 Processing chromosome scaffold34794 INFO [2014-07-02 15:08:28,423] [Preprocessor.java:241] [main] Processing chromosome scaffold348 Processing chromosome scaffold348 INFO [2014-07-02 15:08:28,666] [Preprocessor.java:241] [main] Processing chromosome scaffold34832 Processing chromosome scaffold34832 INFO [2014-07-02 15:08:28,700] [Preprocessor.java:241] [main] Processing chromosome scaffold34850 Processing chromosome scaffold34850 INFO [2014-07-02 15:08:28,718] [Preprocessor.java:241] [main] Processing chromosome scaffold34860 Processing chromosome scaffold34860 INFO [2014-07-02 15:08:28,749] [Preprocessor.java:241] [main] Processing chromosome scaffold34868 Processing chromosome scaffold34868 INFO [2014-07-02 15:08:28,764] [Preprocessor.java:241] [main] Processing chromosome scaffold34872 Processing chromosome scaffold34872 INFO [2014-07-02 15:08:28,793] [Preprocessor.java:241] [main] Processing chromosome scaffold34882 Processing chromosome scaffold34882 INFO [2014-07-02 15:08:28,796] [Preprocessor.java:241] [main] Processing chromosome scaffold34888 Processing chromosome scaffold34888 INFO [2014-07-02 15:08:28,818] [Preprocessor.java:241] [main] Processing chromosome scaffold34894 Processing chromosome scaffold34894 INFO [2014-07-02 15:08:28,838] [Preprocessor.java:241] [main] Processing chromosome scaffold34898 Processing chromosome scaffold34898 INFO [2014-07-02 15:08:28,873] [Preprocessor.java:241] [main] Processing chromosome scaffold34910 Processing chromosome scaffold34910 INFO [2014-07-02 15:08:28,883] [Preprocessor.java:241] [main] Processing chromosome scaffold34932 Processing chromosome scaffold34932 INFO [2014-07-02 15:08:28,944] [Preprocessor.java:241] [main] Processing chromosome scaffold34942 Processing chromosome scaffold34942 INFO [2014-07-02 15:08:28,962] [Preprocessor.java:241] [main] Processing chromosome scaffold34952 Processing chromosome scaffold34952 INFO [2014-07-02 15:08:29,001] [Preprocessor.java:241] [main] Processing chromosome scaffold34956 Processing chromosome scaffold34956 INFO [2014-07-02 15:08:29,011] [Preprocessor.java:241] [main] Processing chromosome scaffold34958 Processing chromosome scaffold34958 INFO [2014-07-02 15:08:29,112] [Preprocessor.java:241] [main] Processing chromosome scaffold34968 Processing chromosome scaffold34968 INFO [2014-07-02 15:08:29,119] [Preprocessor.java:241] [main] Processing chromosome scaffold34972 Processing chromosome scaffold34972 INFO [2014-07-02 15:08:29,190] [Preprocessor.java:241] [main] Processing chromosome scaffold34974 Processing chromosome scaffold34974 INFO [2014-07-02 15:08:29,231] [Preprocessor.java:241] [main] Processing chromosome scaffold34986 Processing chromosome scaffold34986 INFO [2014-07-02 15:08:29,251] [Preprocessor.java:241] [main] Processing chromosome scaffold34994 Processing chromosome scaffold34994 INFO [2014-07-02 15:08:29,277] [Preprocessor.java:241] [main] Processing chromosome scaffold34998 Processing chromosome scaffold34998 INFO [2014-07-02 15:08:29,292] [Preprocessor.java:241] [main] Processing chromosome scaffold35 Processing chromosome scaffold35 INFO [2014-07-02 15:08:29,308] [Preprocessor.java:241] [main] Processing chromosome scaffold350 Processing chromosome scaffold350 INFO [2014-07-02 15:08:29,338] [Preprocessor.java:241] [main] Processing chromosome scaffold35004 Processing chromosome scaffold35004 INFO [2014-07-02 15:08:29,354] [Preprocessor.java:241] [main] Processing chromosome scaffold35014 Processing chromosome scaffold35014 INFO [2014-07-02 15:08:29,435] [Preprocessor.java:241] [main] Processing chromosome scaffold35030 Processing chromosome scaffold35030 INFO [2014-07-02 15:08:29,473] [Preprocessor.java:241] [main] Processing chromosome scaffold35034 Processing chromosome scaffold35034 INFO [2014-07-02 15:08:29,498] [Preprocessor.java:241] [main] Processing chromosome scaffold35036 Processing chromosome scaffold35036 INFO [2014-07-02 15:08:29,521] [Preprocessor.java:241] [main] Processing chromosome scaffold35038 Processing chromosome scaffold35038 INFO [2014-07-02 15:08:29,534] [Preprocessor.java:241] [main] Processing chromosome scaffold35066 Processing chromosome scaffold35066 INFO [2014-07-02 15:08:29,552] [Preprocessor.java:241] [main] Processing chromosome scaffold35070 Processing chromosome scaffold35070 INFO [2014-07-02 15:08:29,573] [Preprocessor.java:241] [main] Processing chromosome scaffold35072 Processing chromosome scaffold35072 INFO [2014-07-02 15:08:29,581] [Preprocessor.java:241] [main] Processing chromosome scaffold35084 Processing chromosome scaffold35084 INFO [2014-07-02 15:08:29,586] [Preprocessor.java:241] [main] Processing chromosome scaffold35094 Processing chromosome scaffold35094 INFO [2014-07-02 15:08:29,596] [Preprocessor.java:241] [main] Processing chromosome scaffold351 Processing chromosome scaffold351 INFO [2014-07-02 15:08:33,924] [Preprocessor.java:241] [main] Processing chromosome scaffold35102 Processing chromosome scaffold35102 INFO [2014-07-02 15:08:33,945] [Preprocessor.java:241] [main] Processing chromosome scaffold35104 Processing chromosome scaffold35104 INFO [2014-07-02 15:08:33,951] [Preprocessor.java:241] [main] Processing chromosome scaffold35108 Processing chromosome scaffold35108 INFO [2014-07-02 15:08:33,978] [Preprocessor.java:241] [main] Processing chromosome scaffold35110 Processing chromosome scaffold35110 INFO [2014-07-02 15:08:33,985] [Preprocessor.java:241] [main] Processing chromosome scaffold35124 Processing chromosome scaffold35124 INFO [2014-07-02 15:08:34,002] [Preprocessor.java:241] [main] Processing chromosome scaffold35136 Processing chromosome scaffold35136 INFO [2014-07-02 15:08:34,058] [Preprocessor.java:241] [main] Processing chromosome scaffold35138 Processing chromosome scaffold35138 INFO [2014-07-02 15:08:34,138] [Preprocessor.java:241] [main] Processing chromosome scaffold35152 Processing chromosome scaffold35152 INFO [2014-07-02 15:08:34,151] [Preprocessor.java:241] [main] Processing chromosome scaffold35154 Processing chromosome scaffold35154 INFO [2014-07-02 15:08:34,156] [Preprocessor.java:241] [main] Processing chromosome scaffold35162 Processing chromosome scaffold35162 INFO [2014-07-02 15:08:34,196] [Preprocessor.java:241] [main] Processing chromosome scaffold35180 Processing chromosome scaffold35180 INFO [2014-07-02 15:08:34,208] [Preprocessor.java:241] [main] Processing chromosome scaffold35194 Processing chromosome scaffold35194 INFO [2014-07-02 15:08:34,217] [Preprocessor.java:241] [main] Processing chromosome scaffold35198 Processing chromosome scaffold35198 INFO [2014-07-02 15:08:34,219] [Preprocessor.java:241] [main] Processing chromosome scaffold352 Processing chromosome scaffold352 INFO [2014-07-02 15:08:34,275] [Preprocessor.java:241] [main] Processing chromosome scaffold35200 Processing chromosome scaffold35200 INFO [2014-07-02 15:08:34,295] [Preprocessor.java:241] [main] Processing chromosome scaffold35230 Processing chromosome scaffold35230 INFO [2014-07-02 15:08:34,315] [Preprocessor.java:241] [main] Processing chromosome scaffold35234 Processing chromosome scaffold35234 INFO [2014-07-02 15:08:34,336] [Preprocessor.java:241] [main] Processing chromosome scaffold35236 Processing chromosome scaffold35236 INFO [2014-07-02 15:08:34,374] [Preprocessor.java:241] [main] Processing chromosome scaffold35238 Processing chromosome scaffold35238 INFO [2014-07-02 15:08:34,394] [Preprocessor.java:241] [main] Processing chromosome scaffold35240 Processing chromosome scaffold35240 INFO [2014-07-02 15:08:34,406] [Preprocessor.java:241] [main] Processing chromosome scaffold35250 Processing chromosome scaffold35250 INFO [2014-07-02 15:08:34,415] [Preprocessor.java:241] [main] Processing chromosome scaffold35252 Processing chromosome scaffold35252 INFO [2014-07-02 15:08:34,427] [Preprocessor.java:241] [main] Processing chromosome scaffold35254 Processing chromosome scaffold35254 INFO [2014-07-02 15:08:34,431] [Preprocessor.java:241] [main] Processing chromosome scaffold35266 Processing chromosome scaffold35266 INFO [2014-07-02 15:08:34,437] [Preprocessor.java:241] [main] Processing chromosome scaffold35268 Processing chromosome scaffold35268 INFO [2014-07-02 15:08:34,461] [Preprocessor.java:241] [main] Processing chromosome scaffold35270 Processing chromosome scaffold35270 INFO [2014-07-02 15:08:34,465] [Preprocessor.java:241] [main] Processing chromosome scaffold35272 Processing chromosome scaffold35272 INFO [2014-07-02 15:08:34,491] [Preprocessor.java:241] [main] Processing chromosome scaffold35276 Processing chromosome scaffold35276 INFO [2014-07-02 15:08:34,497] [Preprocessor.java:241] [main] Processing chromosome scaffold35286 Processing chromosome scaffold35286 INFO [2014-07-02 15:08:34,529] [Preprocessor.java:241] [main] Processing chromosome scaffold35296 Processing chromosome scaffold35296 INFO [2014-07-02 15:08:34,568] [Preprocessor.java:241] [main] Processing chromosome scaffold353 Processing chromosome scaffold353 INFO [2014-07-02 15:08:34,583] [Preprocessor.java:241] [main] Processing chromosome scaffold35306 Processing chromosome scaffold35306 INFO [2014-07-02 15:08:34,605] [Preprocessor.java:241] [main] Processing chromosome scaffold35310 Processing chromosome scaffold35310 INFO [2014-07-02 15:08:34,615] [Preprocessor.java:241] [main] Processing chromosome scaffold35330 Processing chromosome scaffold35330 INFO [2014-07-02 15:08:34,624] [Preprocessor.java:241] [main] Processing chromosome scaffold35332 Processing chromosome scaffold35332 INFO [2014-07-02 15:08:34,690] [Preprocessor.java:241] [main] Processing chromosome scaffold35334 Processing chromosome scaffold35334 INFO [2014-07-02 15:08:34,759] [Preprocessor.java:241] [main] Processing chromosome scaffold35336 Processing chromosome scaffold35336 INFO [2014-07-02 15:08:34,781] [Preprocessor.java:241] [main] Processing chromosome scaffold35344 Processing chromosome scaffold35344 INFO [2014-07-02 15:08:34,787] [Preprocessor.java:241] [main] Processing chromosome scaffold35346 Processing chromosome scaffold35346 INFO [2014-07-02 15:08:34,791] [Preprocessor.java:241] [main] Processing chromosome scaffold35348 Processing chromosome scaffold35348 INFO [2014-07-02 15:08:34,813] [Preprocessor.java:241] [main] Processing chromosome scaffold35358 Processing chromosome scaffold35358 INFO [2014-07-02 15:08:34,828] [Preprocessor.java:241] [main] Processing chromosome scaffold35366 Processing chromosome scaffold35366 INFO [2014-07-02 15:08:34,843] [Preprocessor.java:241] [main] Processing chromosome scaffold35380 Processing chromosome scaffold35380 INFO [2014-07-02 15:08:34,852] [Preprocessor.java:241] [main] Processing chromosome scaffold35388 Processing chromosome scaffold35388 INFO [2014-07-02 15:08:34,857] [Preprocessor.java:241] [main] Processing chromosome scaffold35392 Processing chromosome scaffold35392 INFO [2014-07-02 15:08:34,876] [Preprocessor.java:241] [main] Processing chromosome scaffold35396 Processing chromosome scaffold35396 INFO [2014-07-02 15:08:34,900] [Preprocessor.java:241] [main] Processing chromosome scaffold354 Processing chromosome scaffold354 INFO [2014-07-02 15:08:35,035] [Preprocessor.java:241] [main] Processing chromosome scaffold35406 Processing chromosome scaffold35406 INFO [2014-07-02 15:08:35,052] [Preprocessor.java:241] [main] Processing chromosome scaffold35410 Processing chromosome scaffold35410 INFO [2014-07-02 15:08:35,080] [Preprocessor.java:241] [main] Processing chromosome scaffold35416 Processing chromosome scaffold35416 INFO [2014-07-02 15:08:35,112] [Preprocessor.java:241] [main] Processing chromosome scaffold35430 Processing chromosome scaffold35430 INFO [2014-07-02 15:08:35,119] [Preprocessor.java:241] [main] Processing chromosome scaffold35432 Processing chromosome scaffold35432 INFO [2014-07-02 15:08:35,140] [Preprocessor.java:241] [main] Processing chromosome scaffold35436 Processing chromosome scaffold35436 INFO [2014-07-02 15:08:35,175] [Preprocessor.java:241] [main] Processing chromosome scaffold35438 Processing chromosome scaffold35438 INFO [2014-07-02 15:08:35,181] [Preprocessor.java:241] [main] Processing chromosome scaffold35444 Processing chromosome scaffold35444 INFO [2014-07-02 15:08:35,186] [Preprocessor.java:241] [main] Processing chromosome scaffold35446 Processing chromosome scaffold35446 INFO [2014-07-02 15:08:35,196] [Preprocessor.java:241] [main] Processing chromosome scaffold35466 Processing chromosome scaffold35466 INFO [2014-07-02 15:08:35,212] [Preprocessor.java:241] [main] Processing chromosome scaffold35470 Processing chromosome scaffold35470 INFO [2014-07-02 15:08:35,227] [Preprocessor.java:241] [main] Processing chromosome scaffold35472 Processing chromosome scaffold35472 INFO [2014-07-02 15:08:35,269] [Preprocessor.java:241] [main] Processing chromosome scaffold35476 Processing chromosome scaffold35476 INFO [2014-07-02 15:08:35,294] [Preprocessor.java:241] [main] Processing chromosome scaffold35478 Processing chromosome scaffold35478 INFO [2014-07-02 15:08:35,323] [Preprocessor.java:241] [main] Processing chromosome scaffold35480 Processing chromosome scaffold35480 INFO [2014-07-02 15:08:35,335] [Preprocessor.java:241] [main] Processing chromosome scaffold35486 Processing chromosome scaffold35486 INFO [2014-07-02 15:08:35,378] [Preprocessor.java:241] [main] Processing chromosome scaffold35490 Processing chromosome scaffold35490 INFO [2014-07-02 15:08:35,402] [Preprocessor.java:241] [main] Processing chromosome scaffold35508 Processing chromosome scaffold35508 INFO [2014-07-02 15:08:35,416] [Preprocessor.java:241] [main] Processing chromosome scaffold35518 Processing chromosome scaffold35518 INFO [2014-07-02 15:08:35,449] [Preprocessor.java:241] [main] Processing chromosome scaffold35530 Processing chromosome scaffold35530 INFO [2014-07-02 15:08:35,473] [Preprocessor.java:241] [main] Processing chromosome scaffold35536 Processing chromosome scaffold35536 INFO [2014-07-02 15:08:35,514] [Preprocessor.java:241] [main] Processing chromosome scaffold35538 Processing chromosome scaffold35538 INFO [2014-07-02 15:08:35,549] [Preprocessor.java:241] [main] Processing chromosome scaffold35540 Processing chromosome scaffold35540 INFO [2014-07-02 15:08:35,553] [Preprocessor.java:241] [main] Processing chromosome scaffold35558 Processing chromosome scaffold35558 INFO [2014-07-02 15:08:35,569] [Preprocessor.java:241] [main] Processing chromosome scaffold35568 Processing chromosome scaffold35568 INFO [2014-07-02 15:08:35,577] [Preprocessor.java:241] [main] Processing chromosome scaffold35574 Processing chromosome scaffold35574 INFO [2014-07-02 15:08:35,582] [Preprocessor.java:241] [main] Processing chromosome scaffold35586 Processing chromosome scaffold35586 INFO [2014-07-02 15:08:35,630] [Preprocessor.java:241] [main] Processing chromosome scaffold35598 Processing chromosome scaffold35598 INFO [2014-07-02 15:08:35,649] [Preprocessor.java:241] [main] Processing chromosome scaffold35616 Processing chromosome scaffold35616 INFO [2014-07-02 15:08:35,674] [Preprocessor.java:241] [main] Processing chromosome scaffold35636 Processing chromosome scaffold35636 INFO [2014-07-02 15:08:35,686] [Preprocessor.java:241] [main] Processing chromosome scaffold35640 Processing chromosome scaffold35640 INFO [2014-07-02 15:08:35,703] [Preprocessor.java:241] [main] Processing chromosome scaffold35654 Processing chromosome scaffold35654 INFO [2014-07-02 15:08:35,714] [Preprocessor.java:241] [main] Processing chromosome scaffold35660 Processing chromosome scaffold35660 INFO [2014-07-02 15:08:35,717] [Preprocessor.java:241] [main] Processing chromosome scaffold35680 Processing chromosome scaffold35680 INFO [2014-07-02 15:08:35,755] [Preprocessor.java:241] [main] Processing chromosome scaffold35684 Processing chromosome scaffold35684 INFO [2014-07-02 15:08:35,765] [Preprocessor.java:241] [main] Processing chromosome scaffold35694 Processing chromosome scaffold35694 INFO [2014-07-02 15:08:35,772] [Preprocessor.java:241] [main] Processing chromosome scaffold357 Processing chromosome scaffold357 INFO [2014-07-02 15:08:35,791] [Preprocessor.java:241] [main] Processing chromosome scaffold35712 Processing chromosome scaffold35712 INFO [2014-07-02 15:08:35,834] [Preprocessor.java:241] [main] Processing chromosome scaffold35724 Processing chromosome scaffold35724 INFO [2014-07-02 15:08:35,849] [Preprocessor.java:241] [main] Processing chromosome scaffold35726 Processing chromosome scaffold35726 INFO [2014-07-02 15:08:35,866] [Preprocessor.java:241] [main] Processing chromosome scaffold35732 Processing chromosome scaffold35732 INFO [2014-07-02 15:08:35,876] [Preprocessor.java:241] [main] Processing chromosome scaffold35754 Processing chromosome scaffold35754 INFO [2014-07-02 15:08:35,887] [Preprocessor.java:241] [main] Processing chromosome scaffold35772 Processing chromosome scaffold35772 INFO [2014-07-02 15:08:35,896] [Preprocessor.java:241] [main] Processing chromosome scaffold35784 Processing chromosome scaffold35784 INFO [2014-07-02 15:08:35,910] [Preprocessor.java:241] [main] Processing chromosome scaffold35792 Processing chromosome scaffold35792 INFO [2014-07-02 15:08:35,932] [Preprocessor.java:241] [main] Processing chromosome scaffold35796 Processing chromosome scaffold35796 INFO [2014-07-02 15:08:35,939] [Preprocessor.java:241] [main] Processing chromosome scaffold358 Processing chromosome scaffold358 INFO [2014-07-02 15:08:43,133] [Preprocessor.java:241] [main] Processing chromosome scaffold35806 Processing chromosome scaffold35806 INFO [2014-07-02 15:08:43,136] [Preprocessor.java:241] [main] Processing chromosome scaffold35808 Processing chromosome scaffold35808 INFO [2014-07-02 15:08:43,150] [Preprocessor.java:241] [main] Processing chromosome scaffold35814 Processing chromosome scaffold35814 INFO [2014-07-02 15:08:43,154] [Preprocessor.java:241] [main] Processing chromosome scaffold35822 Processing chromosome scaffold35822 INFO [2014-07-02 15:08:43,196] [Preprocessor.java:241] [main] Processing chromosome scaffold35836 Processing chromosome scaffold35836 INFO [2014-07-02 15:08:43,240] [Preprocessor.java:241] [main] Processing chromosome scaffold35854 Processing chromosome scaffold35854 INFO [2014-07-02 15:08:43,266] [Preprocessor.java:241] [main] Processing chromosome scaffold35860 Processing chromosome scaffold35860 INFO [2014-07-02 15:08:43,276] [Preprocessor.java:241] [main] Processing chromosome scaffold35866 Processing chromosome scaffold35866 INFO [2014-07-02 15:08:43,308] [Preprocessor.java:241] [main] Processing chromosome scaffold35870 Processing chromosome scaffold35870 INFO [2014-07-02 15:08:43,333] [Preprocessor.java:241] [main] Processing chromosome scaffold35874 Processing chromosome scaffold35874 INFO [2014-07-02 15:08:43,340] [Preprocessor.java:241] [main] Processing chromosome scaffold35884 Processing chromosome scaffold35884 INFO [2014-07-02 15:08:43,373] [Preprocessor.java:241] [main] Processing chromosome scaffold35890 Processing chromosome scaffold35890 INFO [2014-07-02 15:08:43,397] [Preprocessor.java:241] [main] Processing chromosome scaffold35894 Processing chromosome scaffold35894 INFO [2014-07-02 15:08:43,410] [Preprocessor.java:241] [main] Processing chromosome scaffold35896 Processing chromosome scaffold35896 INFO [2014-07-02 15:08:43,425] [Preprocessor.java:241] [main] Processing chromosome scaffold35898 Processing chromosome scaffold35898 INFO [2014-07-02 15:08:43,433] [Preprocessor.java:241] [main] Processing chromosome scaffold35900 Processing chromosome scaffold35900 INFO [2014-07-02 15:08:43,446] [Preprocessor.java:241] [main] Processing chromosome scaffold35902 Processing chromosome scaffold35902 INFO [2014-07-02 15:08:43,464] [Preprocessor.java:241] [main] Processing chromosome scaffold35910 Processing chromosome scaffold35910 INFO [2014-07-02 15:08:43,480] [Preprocessor.java:241] [main] Processing chromosome scaffold35912 Processing chromosome scaffold35912 INFO [2014-07-02 15:08:43,520] [Preprocessor.java:241] [main] Processing chromosome scaffold35926 Processing chromosome scaffold35926 INFO [2014-07-02 15:08:43,538] [Preprocessor.java:241] [main] Processing chromosome scaffold35928 Processing chromosome scaffold35928 INFO [2014-07-02 15:08:43,548] [Preprocessor.java:241] [main] Processing chromosome scaffold35936 Processing chromosome scaffold35936 INFO [2014-07-02 15:08:43,580] [Preprocessor.java:241] [main] Processing chromosome scaffold35946 Processing chromosome scaffold35946 INFO [2014-07-02 15:08:43,599] [Preprocessor.java:241] [main] Processing chromosome scaffold35950 Processing chromosome scaffold35950 INFO [2014-07-02 15:08:43,605] [Preprocessor.java:241] [main] Processing chromosome scaffold35958 Processing chromosome scaffold35958 INFO [2014-07-02 15:08:43,607] [Preprocessor.java:241] [main] Processing chromosome scaffold35960 Processing chromosome scaffold35960 INFO [2014-07-02 15:08:43,634] [Preprocessor.java:241] [main] Processing chromosome scaffold35966 Processing chromosome scaffold35966 INFO [2014-07-02 15:08:43,643] [Preprocessor.java:241] [main] Processing chromosome scaffold35970 Processing chromosome scaffold35970 INFO [2014-07-02 15:08:43,665] [Preprocessor.java:241] [main] Processing chromosome scaffold35974 Processing chromosome scaffold35974 INFO [2014-07-02 15:08:43,681] [Preprocessor.java:241] [main] Processing chromosome scaffold35982 Processing chromosome scaffold35982 INFO [2014-07-02 15:08:43,731] [Preprocessor.java:241] [main] Processing chromosome scaffold35986 Processing chromosome scaffold35986 INFO [2014-07-02 15:08:43,742] [Preprocessor.java:241] [main] Processing chromosome scaffold35988 Processing chromosome scaffold35988 INFO [2014-07-02 15:08:43,757] [Preprocessor.java:241] [main] Processing chromosome scaffold35994 Processing chromosome scaffold35994 INFO [2014-07-02 15:08:43,794] [Preprocessor.java:241] [main] Processing chromosome scaffold36 Processing chromosome scaffold36 INFO [2014-07-02 15:08:43,823] [Preprocessor.java:241] [main] Processing chromosome scaffold36002 Processing chromosome scaffold36002 INFO [2014-07-02 15:08:43,841] [Preprocessor.java:241] [main] Processing chromosome scaffold36004 Processing chromosome scaffold36004 INFO [2014-07-02 15:08:43,849] [Preprocessor.java:241] [main] Processing chromosome scaffold36006 Processing chromosome scaffold36006 INFO [2014-07-02 15:08:43,877] [Preprocessor.java:241] [main] Processing chromosome scaffold36016 Processing chromosome scaffold36016 INFO [2014-07-02 15:08:43,889] [Preprocessor.java:241] [main] Processing chromosome scaffold36020 Processing chromosome scaffold36020 INFO [2014-07-02 15:08:43,893] [Preprocessor.java:241] [main] Processing chromosome scaffold36022 Processing chromosome scaffold36022 INFO [2014-07-02 15:08:43,912] [Preprocessor.java:241] [main] Processing chromosome scaffold36026 Processing chromosome scaffold36026 INFO [2014-07-02 15:08:43,917] [Preprocessor.java:241] [main] Processing chromosome scaffold36034 Processing chromosome scaffold36034 INFO [2014-07-02 15:08:43,941] [Preprocessor.java:241] [main] Processing chromosome scaffold36036 Processing chromosome scaffold36036 INFO [2014-07-02 15:08:43,961] [Preprocessor.java:241] [main] Processing chromosome scaffold36070 Processing chromosome scaffold36070 INFO [2014-07-02 15:08:43,972] [Preprocessor.java:241] [main] Processing chromosome scaffold36088 Processing chromosome scaffold36088 INFO [2014-07-02 15:08:43,977] [Preprocessor.java:241] [main] Processing chromosome scaffold36092 Processing chromosome scaffold36092 INFO [2014-07-02 15:08:43,993] [Preprocessor.java:241] [main] Processing chromosome scaffold36094 Processing chromosome scaffold36094 INFO [2014-07-02 15:08:44,033] [Preprocessor.java:241] [main] Processing chromosome scaffold361 Processing chromosome scaffold361 INFO [2014-07-02 15:08:44,137] [Preprocessor.java:241] [main] Processing chromosome scaffold36102 Processing chromosome scaffold36102 INFO [2014-07-02 15:08:44,148] [Preprocessor.java:241] [main] Processing chromosome scaffold36104 Processing chromosome scaffold36104 INFO [2014-07-02 15:08:44,175] [Preprocessor.java:241] [main] Processing chromosome scaffold36108 Processing chromosome scaffold36108 INFO [2014-07-02 15:08:44,213] [Preprocessor.java:241] [main] Processing chromosome scaffold36114 Processing chromosome scaffold36114 INFO [2014-07-02 15:08:44,233] [Preprocessor.java:241] [main] Processing chromosome scaffold36118 Processing chromosome scaffold36118 INFO [2014-07-02 15:08:44,277] [Preprocessor.java:241] [main] Processing chromosome scaffold36122 Processing chromosome scaffold36122 INFO [2014-07-02 15:08:44,323] [Preprocessor.java:241] [main] Processing chromosome scaffold36140 Processing chromosome scaffold36140 INFO [2014-07-02 15:08:44,338] [Preprocessor.java:241] [main] Processing chromosome scaffold36156 Processing chromosome scaffold36156 INFO [2014-07-02 15:08:44,351] [Preprocessor.java:241] [main] Processing chromosome scaffold36158 Processing chromosome scaffold36158 INFO [2014-07-02 15:08:46,690] [Preprocessor.java:241] [main] Processing chromosome scaffold36170 Processing chromosome scaffold36170 INFO [2014-07-02 15:08:46,706] [Preprocessor.java:241] [main] Processing chromosome scaffold36174 Processing chromosome scaffold36174 INFO [2014-07-02 15:08:46,742] [Preprocessor.java:241] [main] Processing chromosome scaffold36190 Processing chromosome scaffold36190 INFO [2014-07-02 15:08:46,760] [Preprocessor.java:241] [main] Processing chromosome scaffold36196 Processing chromosome scaffold36196 INFO [2014-07-02 15:08:46,783] [Preprocessor.java:241] [main] Processing chromosome scaffold36198 Processing chromosome scaffold36198 INFO [2014-07-02 15:08:46,811] [Preprocessor.java:241] [main] Processing chromosome scaffold36202 Processing chromosome scaffold36202 INFO [2014-07-02 15:08:46,820] [Preprocessor.java:241] [main] Processing chromosome scaffold36208 Processing chromosome scaffold36208 INFO [2014-07-02 15:08:46,842] [Preprocessor.java:241] [main] Processing chromosome scaffold36210 Processing chromosome scaffold36210 INFO [2014-07-02 15:08:46,872] [Preprocessor.java:241] [main] Processing chromosome scaffold36218 Processing chromosome scaffold36218 INFO [2014-07-02 15:08:46,882] [Preprocessor.java:241] [main] Processing chromosome scaffold36240 Processing chromosome scaffold36240 INFO [2014-07-02 15:08:46,917] [Preprocessor.java:241] [main] Processing chromosome scaffold36278 Processing chromosome scaffold36278 INFO [2014-07-02 15:08:46,958] [Preprocessor.java:241] [main] Processing chromosome scaffold36286 Processing chromosome scaffold36286 INFO [2014-07-02 15:08:46,974] [Preprocessor.java:241] [main] Processing chromosome scaffold36298 Processing chromosome scaffold36298 INFO [2014-07-02 15:08:46,982] [Preprocessor.java:241] [main] Processing chromosome scaffold363 Processing chromosome scaffold363 INFO [2014-07-02 15:08:47,056] [Preprocessor.java:241] [main] Processing chromosome scaffold36314 Processing chromosome scaffold36314 INFO [2014-07-02 15:08:47,100] [Preprocessor.java:241] [main] Processing chromosome scaffold36318 Processing chromosome scaffold36318 INFO [2014-07-02 15:08:47,161] [Preprocessor.java:241] [main] Processing chromosome scaffold36324 Processing chromosome scaffold36324 INFO [2014-07-02 15:08:47,176] [Preprocessor.java:241] [main] Processing chromosome scaffold36334 Processing chromosome scaffold36334 INFO [2014-07-02 15:08:47,183] [Preprocessor.java:241] [main] Processing chromosome scaffold36336 Processing chromosome scaffold36336 INFO [2014-07-02 15:08:47,220] [Preprocessor.java:241] [main] Processing chromosome scaffold36342 Processing chromosome scaffold36342 INFO [2014-07-02 15:08:47,231] [Preprocessor.java:241] [main] Processing chromosome scaffold36348 Processing chromosome scaffold36348 INFO [2014-07-02 15:08:47,236] [Preprocessor.java:241] [main] Processing chromosome scaffold36356 Processing chromosome scaffold36356 INFO [2014-07-02 15:08:47,249] [Preprocessor.java:241] [main] Processing chromosome scaffold36362 Processing chromosome scaffold36362 INFO [2014-07-02 15:08:47,259] [Preprocessor.java:241] [main] Processing chromosome scaffold36378 Processing chromosome scaffold36378 INFO [2014-07-02 15:08:47,292] [Preprocessor.java:241] [main] Processing chromosome scaffold36384 Processing chromosome scaffold36384 INFO [2014-07-02 15:08:47,315] [Preprocessor.java:241] [main] Processing chromosome scaffold36390 Processing chromosome scaffold36390 INFO [2014-07-02 15:08:47,331] [Preprocessor.java:241] [main] Processing chromosome scaffold36398 Processing chromosome scaffold36398 INFO [2014-07-02 15:08:47,359] [Preprocessor.java:241] [main] Processing chromosome scaffold364 Processing chromosome scaffold364 .INFO [2014-07-02 15:08:47,489] [Preprocessor.java:241] [main] Processing chromosome scaffold36406 Processing chromosome scaffold36406 INFO [2014-07-02 15:08:47,505] [Preprocessor.java:241] [main] Processing chromosome scaffold36410 Processing chromosome scaffold36410 INFO [2014-07-02 15:08:47,523] [Preprocessor.java:241] [main] Processing chromosome scaffold36420 Processing chromosome scaffold36420 INFO [2014-07-02 15:08:47,536] [Preprocessor.java:241] [main] Processing chromosome scaffold36426 Processing chromosome scaffold36426 INFO [2014-07-02 15:08:47,546] [Preprocessor.java:241] [main] Processing chromosome scaffold36432 Processing chromosome scaffold36432 INFO [2014-07-02 15:08:47,565] [Preprocessor.java:241] [main] Processing chromosome scaffold36450 Processing chromosome scaffold36450 INFO [2014-07-02 15:08:47,579] [Preprocessor.java:241] [main] Processing chromosome scaffold36452 Processing chromosome scaffold36452 INFO [2014-07-02 15:08:47,604] [Preprocessor.java:241] [main] Processing chromosome scaffold36456 Processing chromosome scaffold36456 INFO [2014-07-02 15:08:47,614] [Preprocessor.java:241] [main] Processing chromosome scaffold36462 Processing chromosome scaffold36462 INFO [2014-07-02 15:08:47,644] [Preprocessor.java:241] [main] Processing chromosome scaffold36470 Processing chromosome scaffold36470 INFO [2014-07-02 15:08:47,665] [Preprocessor.java:241] [main] Processing chromosome scaffold36474 Processing chromosome scaffold36474 INFO [2014-07-02 15:08:47,707] [Preprocessor.java:241] [main] Processing chromosome scaffold36476 Processing chromosome scaffold36476 INFO [2014-07-02 15:08:47,748] [Preprocessor.java:241] [main] Processing chromosome scaffold36482 Processing chromosome scaffold36482 INFO [2014-07-02 15:08:47,761] [Preprocessor.java:241] [main] Processing chromosome scaffold36490 Processing chromosome scaffold36490 INFO [2014-07-02 15:08:47,791] [Preprocessor.java:241] [main] Processing chromosome scaffold36492 Processing chromosome scaffold36492 INFO [2014-07-02 15:08:47,796] [Preprocessor.java:241] [main] Processing chromosome scaffold36494 Processing chromosome scaffold36494 INFO [2014-07-02 15:08:47,824] [Preprocessor.java:241] [main] Processing chromosome scaffold365 Processing chromosome scaffold365 INFO [2014-07-02 15:08:50,919] [Preprocessor.java:241] [main] Processing chromosome scaffold36506 Processing chromosome scaffold36506 INFO [2014-07-02 15:08:50,945] [Preprocessor.java:241] [main] Processing chromosome scaffold36510 Processing chromosome scaffold36510 INFO [2014-07-02 15:08:50,949] [Preprocessor.java:241] [main] Processing chromosome scaffold36516 Processing chromosome scaffold36516 INFO [2014-07-02 15:08:50,955] [Preprocessor.java:241] [main] Processing chromosome scaffold36526 Processing chromosome scaffold36526 INFO [2014-07-02 15:08:50,973] [Preprocessor.java:241] [main] Processing chromosome scaffold36534 Processing chromosome scaffold36534 INFO [2014-07-02 15:08:50,975] [Preprocessor.java:241] [main] Processing chromosome scaffold36536 Processing chromosome scaffold36536 INFO [2014-07-02 15:08:50,988] [Preprocessor.java:241] [main] Processing chromosome scaffold36542 Processing chromosome scaffold36542 INFO [2014-07-02 15:08:51,014] [Preprocessor.java:241] [main] Processing chromosome scaffold36548 Processing chromosome scaffold36548 INFO [2014-07-02 15:08:51,038] [Preprocessor.java:241] [main] Processing chromosome scaffold36572 Processing chromosome scaffold36572 INFO [2014-07-02 15:08:51,078] [Preprocessor.java:241] [main] Processing chromosome scaffold36590 Processing chromosome scaffold36590 INFO [2014-07-02 15:08:51,090] [Preprocessor.java:241] [main] Processing chromosome scaffold36592 Processing chromosome scaffold36592 INFO [2014-07-02 15:08:51,095] [Preprocessor.java:241] [main] Processing chromosome scaffold36594 Processing chromosome scaffold36594 INFO [2014-07-02 15:08:51,104] [Preprocessor.java:241] [main] Processing chromosome scaffold36598 Processing chromosome scaffold36598 INFO [2014-07-02 15:08:51,126] [Preprocessor.java:241] [main] Processing chromosome scaffold366 Processing chromosome scaffold366 INFO [2014-07-02 15:08:51,178] [Preprocessor.java:241] [main] Processing chromosome scaffold36624 Processing chromosome scaffold36624 INFO [2014-07-02 15:08:51,181] [Preprocessor.java:241] [main] Processing chromosome scaffold36630 Processing chromosome scaffold36630 INFO [2014-07-02 15:08:51,190] [Preprocessor.java:241] [main] Processing chromosome scaffold36638 Processing chromosome scaffold36638 INFO [2014-07-02 15:08:51,237] [Preprocessor.java:241] [main] Processing chromosome scaffold36640 Processing chromosome scaffold36640 INFO [2014-07-02 15:08:51,250] [Preprocessor.java:241] [main] Processing chromosome scaffold36642 Processing chromosome scaffold36642 INFO [2014-07-02 15:08:51,263] [Preprocessor.java:241] [main] Processing chromosome scaffold36650 Processing chromosome scaffold36650 INFO [2014-07-02 15:08:51,275] [Preprocessor.java:241] [main] Processing chromosome scaffold36654 Processing chromosome scaffold36654 INFO [2014-07-02 15:08:51,332] [Preprocessor.java:241] [main] Processing chromosome scaffold36660 Processing chromosome scaffold36660 INFO [2014-07-02 15:08:51,340] [Preprocessor.java:241] [main] Processing chromosome scaffold36664 Processing chromosome scaffold36664 INFO [2014-07-02 15:08:51,350] [Preprocessor.java:241] [main] Processing chromosome scaffold36672 Processing chromosome scaffold36672 INFO [2014-07-02 15:08:51,365] [Preprocessor.java:241] [main] Processing chromosome scaffold36674 Processing chromosome scaffold36674 INFO [2014-07-02 15:08:51,394] [Preprocessor.java:241] [main] Processing chromosome scaffold36678 Processing chromosome scaffold36678 INFO [2014-07-02 15:08:51,410] [Preprocessor.java:241] [main] Processing chromosome scaffold36684 Processing chromosome scaffold36684 INFO [2014-07-02 15:08:51,415] [Preprocessor.java:241] [main] Processing chromosome scaffold36698 Processing chromosome scaffold36698 INFO [2014-07-02 15:08:51,461] [Preprocessor.java:241] [main] Processing chromosome scaffold367 Processing chromosome scaffold367 INFO [2014-07-02 15:08:51,470] [Preprocessor.java:241] [main] Processing chromosome scaffold36716 Processing chromosome scaffold36716 INFO [2014-07-02 15:08:51,491] [Preprocessor.java:241] [main] Processing chromosome scaffold36728 Processing chromosome scaffold36728 INFO [2014-07-02 15:08:51,527] [Preprocessor.java:241] [main] Processing chromosome scaffold36730 Processing chromosome scaffold36730 INFO [2014-07-02 15:08:51,540] [Preprocessor.java:241] [main] Processing chromosome scaffold36732 Processing chromosome scaffold36732 INFO [2014-07-02 15:08:51,574] [Preprocessor.java:241] [main] Processing chromosome scaffold36736 Processing chromosome scaffold36736 INFO [2014-07-02 15:08:51,603] [Preprocessor.java:241] [main] Processing chromosome scaffold36748 Processing chromosome scaffold36748 INFO [2014-07-02 15:08:51,609] [Preprocessor.java:241] [main] Processing chromosome scaffold36758 Processing chromosome scaffold36758 INFO [2014-07-02 15:08:51,659] [Preprocessor.java:241] [main] Processing chromosome scaffold36760 Processing chromosome scaffold36760 INFO [2014-07-02 15:08:51,673] [Preprocessor.java:241] [main] Processing chromosome scaffold36768 Processing chromosome scaffold36768 INFO [2014-07-02 15:08:51,681] [Preprocessor.java:241] [main] Processing chromosome scaffold36774 Processing chromosome scaffold36774 INFO [2014-07-02 15:08:51,705] [Preprocessor.java:241] [main] Processing chromosome scaffold36778 Processing chromosome scaffold36778 INFO [2014-07-02 15:08:51,711] [Preprocessor.java:241] [main] Processing chromosome scaffold36790 Processing chromosome scaffold36790 INFO [2014-07-02 15:08:51,723] [Preprocessor.java:241] [main] Processing chromosome scaffold36794 Processing chromosome scaffold36794 INFO [2014-07-02 15:08:51,747] [Preprocessor.java:241] [main] Processing chromosome scaffold368 Processing chromosome scaffold368 INFO [2014-07-02 15:08:51,805] [Preprocessor.java:241] [main] Processing chromosome scaffold36802 Processing chromosome scaffold36802 INFO [2014-07-02 15:08:51,816] [Preprocessor.java:241] [main] Processing chromosome scaffold36806 Processing chromosome scaffold36806 INFO [2014-07-02 15:08:51,825] [Preprocessor.java:241] [main] Processing chromosome scaffold36808 Processing chromosome scaffold36808 INFO [2014-07-02 15:08:51,840] [Preprocessor.java:241] [main] Processing chromosome scaffold36812 Processing chromosome scaffold36812 INFO [2014-07-02 15:08:51,869] [Preprocessor.java:241] [main] Processing chromosome scaffold36816 Processing chromosome scaffold36816 INFO [2014-07-02 15:08:51,878] [Preprocessor.java:241] [main] Processing chromosome scaffold36820 Processing chromosome scaffold36820 INFO [2014-07-02 15:08:51,884] [Preprocessor.java:241] [main] Processing chromosome scaffold36848 Processing chromosome scaffold36848 INFO [2014-07-02 15:08:51,890] [Preprocessor.java:241] [main] Processing chromosome scaffold36850 Processing chromosome scaffold36850 INFO [2014-07-02 15:08:51,893] [Preprocessor.java:241] [main] Processing chromosome scaffold36854 Processing chromosome scaffold36854 INFO [2014-07-02 15:08:51,901] [Preprocessor.java:241] [main] Processing chromosome scaffold36858 Processing chromosome scaffold36858 INFO [2014-07-02 15:08:51,910] [Preprocessor.java:241] [main] Processing chromosome scaffold36862 Processing chromosome scaffold36862 INFO [2014-07-02 15:08:51,953] [Preprocessor.java:241] [main] Processing chromosome scaffold36866 Processing chromosome scaffold36866 INFO [2014-07-02 15:08:51,978] [Preprocessor.java:241] [main] Processing chromosome scaffold36872 Processing chromosome scaffold36872 INFO [2014-07-02 15:08:51,990] [Preprocessor.java:241] [main] Processing chromosome scaffold36886 Processing chromosome scaffold36886 INFO [2014-07-02 15:08:52,009] [Preprocessor.java:241] [main] Processing chromosome scaffold36898 Processing chromosome scaffold36898 INFO [2014-07-02 15:08:52,020] [Preprocessor.java:241] [main] Processing chromosome scaffold369 Processing chromosome scaffold369 INFO [2014-07-02 15:08:52,068] [Preprocessor.java:241] [main] Processing chromosome scaffold36900 Processing chromosome scaffold36900 INFO [2014-07-02 15:08:52,096] [Preprocessor.java:241] [main] Processing chromosome scaffold36904 Processing chromosome scaffold36904 INFO [2014-07-02 15:08:52,127] [Preprocessor.java:241] [main] Processing chromosome scaffold36906 Processing chromosome scaffold36906 INFO [2014-07-02 15:08:52,134] [Preprocessor.java:241] [main] Processing chromosome scaffold36916 Processing chromosome scaffold36916 INFO [2014-07-02 15:08:52,171] [Preprocessor.java:241] [main] Processing chromosome scaffold36926 Processing chromosome scaffold36926 INFO [2014-07-02 15:08:52,192] [Preprocessor.java:241] [main] Processing chromosome scaffold36928 Processing chromosome scaffold36928 INFO [2014-07-02 15:08:55,858] [Preprocessor.java:241] [main] Processing chromosome scaffold36936 Processing chromosome scaffold36936 INFO [2014-07-02 15:08:55,891] [Preprocessor.java:241] [main] Processing chromosome scaffold36940 Processing chromosome scaffold36940 INFO [2014-07-02 15:08:55,901] [Preprocessor.java:241] [main] Processing chromosome scaffold36970 Processing chromosome scaffold36970 INFO [2014-07-02 15:08:55,912] [Preprocessor.java:241] [main] Processing chromosome scaffold36980 Processing chromosome scaffold36980 INFO [2014-07-02 15:08:55,961] [Preprocessor.java:241] [main] Processing chromosome scaffold36994 Processing chromosome scaffold36994 INFO [2014-07-02 15:08:55,992] [Preprocessor.java:241] [main] Processing chromosome scaffold36998 Processing chromosome scaffold36998 INFO [2014-07-02 15:08:55,995] [Preprocessor.java:241] [main] Processing chromosome scaffold37 Processing chromosome scaffold37 INFO [2014-07-02 15:08:56,026] [Preprocessor.java:241] [main] Processing chromosome scaffold370 Processing chromosome scaffold370 INFO [2014-07-02 15:08:56,190] [Preprocessor.java:241] [main] Processing chromosome scaffold37002 Processing chromosome scaffold37002 INFO [2014-07-02 15:08:56,220] [Preprocessor.java:241] [main] Processing chromosome scaffold37006 Processing chromosome scaffold37006 INFO [2014-07-02 15:08:56,232] [Preprocessor.java:241] [main] Processing chromosome scaffold37010 Processing chromosome scaffold37010 INFO [2014-07-02 15:08:56,263] [Preprocessor.java:241] [main] Processing chromosome scaffold37014 Processing chromosome scaffold37014 INFO [2014-07-02 15:08:56,333] [Preprocessor.java:241] [main] Processing chromosome scaffold37028 Processing chromosome scaffold37028 INFO [2014-07-02 15:08:56,341] [Preprocessor.java:241] [main] Processing chromosome scaffold37032 Processing chromosome scaffold37032 INFO [2014-07-02 15:08:56,349] [Preprocessor.java:241] [main] Processing chromosome scaffold37042 Processing chromosome scaffold37042 INFO [2014-07-02 15:08:56,370] [Preprocessor.java:241] [main] Processing chromosome scaffold37046 Processing chromosome scaffold37046 INFO [2014-07-02 15:08:56,395] [Preprocessor.java:241] [main] Processing chromosome scaffold37050 Processing chromosome scaffold37050 INFO [2014-07-02 15:08:56,400] [Preprocessor.java:241] [main] Processing chromosome scaffold37054 Processing chromosome scaffold37054 INFO [2014-07-02 15:08:56,413] [Preprocessor.java:241] [main] Processing chromosome scaffold37062 Processing chromosome scaffold37062 INFO [2014-07-02 15:08:56,448] [Preprocessor.java:241] [main] Processing chromosome scaffold37064 Processing chromosome scaffold37064 INFO [2014-07-02 15:08:56,457] [Preprocessor.java:241] [main] Processing chromosome scaffold37068 Processing chromosome scaffold37068 INFO [2014-07-02 15:08:56,513] [Preprocessor.java:241] [main] Processing chromosome scaffold37080 Processing chromosome scaffold37080 INFO [2014-07-02 15:08:56,524] [Preprocessor.java:241] [main] Processing chromosome scaffold37082 Processing chromosome scaffold37082 INFO [2014-07-02 15:08:56,536] [Preprocessor.java:241] [main] Processing chromosome scaffold37092 Processing chromosome scaffold37092 INFO [2014-07-02 15:08:57,399] [Preprocessor.java:241] [main] Processing chromosome scaffold37096 Processing chromosome scaffold37096 INFO [2014-07-02 15:08:57,426] [Preprocessor.java:241] [main] Processing chromosome scaffold37098 Processing chromosome scaffold37098 INFO [2014-07-02 15:08:57,439] [Preprocessor.java:241] [main] Processing chromosome scaffold371 Processing chromosome scaffold371 INFO [2014-07-02 15:08:57,450] [Preprocessor.java:241] [main] Processing chromosome scaffold37124 Processing chromosome scaffold37124 INFO [2014-07-02 15:09:02,441] [Preprocessor.java:241] [main] Processing chromosome scaffold37128 Processing chromosome scaffold37128 INFO [2014-07-02 15:09:02,477] [Preprocessor.java:241] [main] Processing chromosome scaffold37134 Processing chromosome scaffold37134 INFO [2014-07-02 15:09:02,501] [Preprocessor.java:241] [main] Processing chromosome scaffold37148 Processing chromosome scaffold37148 INFO [2014-07-02 15:09:02,530] [Preprocessor.java:241] [main] Processing chromosome scaffold37154 Processing chromosome scaffold37154 INFO [2014-07-02 15:09:02,537] [Preprocessor.java:241] [main] Processing chromosome scaffold37176 Processing chromosome scaffold37176 INFO [2014-07-02 15:09:02,541] [Preprocessor.java:241] [main] Processing chromosome scaffold37178 Processing chromosome scaffold37178 INFO [2014-07-02 15:09:02,554] [Preprocessor.java:241] [main] Processing chromosome scaffold37186 Processing chromosome scaffold37186 INFO [2014-07-02 15:09:02,578] [Preprocessor.java:241] [main] Processing chromosome scaffold372 Processing chromosome scaffold372 INFO [2014-07-02 15:09:04,572] [Preprocessor.java:241] [main] Processing chromosome scaffold37200 Processing chromosome scaffold37200 INFO [2014-07-02 15:09:04,580] [Preprocessor.java:241] [main] Processing chromosome scaffold37206 Processing chromosome scaffold37206 INFO [2014-07-02 15:09:04,586] [Preprocessor.java:241] [main] Processing chromosome scaffold37214 Processing chromosome scaffold37214 INFO [2014-07-02 15:09:04,600] [Preprocessor.java:241] [main] Processing chromosome scaffold37248 Processing chromosome scaffold37248 INFO [2014-07-02 15:09:04,617] [Preprocessor.java:241] [main] Processing chromosome scaffold37252 Processing chromosome scaffold37252 INFO [2014-07-02 15:09:04,628] [Preprocessor.java:241] [main] Processing chromosome scaffold37278 Processing chromosome scaffold37278 INFO [2014-07-02 15:09:04,644] [Preprocessor.java:241] [main] Processing chromosome scaffold37286 Processing chromosome scaffold37286 INFO [2014-07-02 15:09:04,656] [Preprocessor.java:241] [main] Processing chromosome scaffold37290 Processing chromosome scaffold37290 INFO [2014-07-02 15:09:04,661] [Preprocessor.java:241] [main] Processing chromosome scaffold37292 Processing chromosome scaffold37292 INFO [2014-07-02 15:09:04,685] [Preprocessor.java:241] [main] Processing chromosome scaffold37308 Processing chromosome scaffold37308 INFO [2014-07-02 15:09:04,689] [Preprocessor.java:241] [main] Processing chromosome scaffold37344 Processing chromosome scaffold37344 INFO [2014-07-02 15:09:04,729] [Preprocessor.java:241] [main] Processing chromosome scaffold37358 Processing chromosome scaffold37358 INFO [2014-07-02 15:09:04,753] [Preprocessor.java:241] [main] Processing chromosome scaffold37378 Processing chromosome scaffold37378 INFO [2014-07-02 15:09:04,771] [Preprocessor.java:241] [main] Processing chromosome scaffold37386 Processing chromosome scaffold37386 INFO [2014-07-02 15:09:04,801] [Preprocessor.java:241] [main] Processing chromosome scaffold37396 Processing chromosome scaffold37396 INFO [2014-07-02 15:09:04,826] [Preprocessor.java:241] [main] Processing chromosome scaffold374 Processing chromosome scaffold374 INFO [2014-07-02 15:09:04,865] [Preprocessor.java:241] [main] Processing chromosome scaffold37400 Processing chromosome scaffold37400 INFO [2014-07-02 15:09:04,907] [Preprocessor.java:241] [main] Processing chromosome scaffold37408 Processing chromosome scaffold37408 INFO [2014-07-02 15:09:04,918] [Preprocessor.java:241] [main] Processing chromosome scaffold37418 Processing chromosome scaffold37418 INFO [2014-07-02 15:09:04,938] [Preprocessor.java:241] [main] Processing chromosome scaffold37422 Processing chromosome scaffold37422 INFO [2014-07-02 15:09:04,948] [Preprocessor.java:241] [main] Processing chromosome scaffold37424 Processing chromosome scaffold37424 INFO [2014-07-02 15:09:04,978] [Preprocessor.java:241] [main] Processing chromosome scaffold37426 Processing chromosome scaffold37426 INFO [2014-07-02 15:09:04,987] [Preprocessor.java:241] [main] Processing chromosome scaffold37428 Processing chromosome scaffold37428 INFO [2014-07-02 15:09:04,999] [Preprocessor.java:241] [main] Processing chromosome scaffold37430 Processing chromosome scaffold37430 INFO [2014-07-02 15:09:05,019] [Preprocessor.java:241] [main] Processing chromosome scaffold37432 Processing chromosome scaffold37432 INFO [2014-07-02 15:09:05,024] [Preprocessor.java:241] [main] Processing chromosome scaffold37436 Processing chromosome scaffold37436 INFO [2014-07-02 15:09:05,051] [Preprocessor.java:241] [main] Processing chromosome scaffold37438 Processing chromosome scaffold37438 INFO [2014-07-02 15:09:05,064] [Preprocessor.java:241] [main] Processing chromosome scaffold37460 Processing chromosome scaffold37460 INFO [2014-07-02 15:09:05,112] [Preprocessor.java:241] [main] Processing chromosome scaffold37468 Processing chromosome scaffold37468 INFO [2014-07-02 15:09:05,124] [Preprocessor.java:241] [main] Processing chromosome scaffold37472 Processing chromosome scaffold37472 INFO [2014-07-02 15:09:05,162] [Preprocessor.java:241] [main] Processing chromosome scaffold37488 Processing chromosome scaffold37488 INFO [2014-07-02 15:09:05,182] [Preprocessor.java:241] [main] Processing chromosome scaffold37496 Processing chromosome scaffold37496 INFO [2014-07-02 15:09:05,194] [Preprocessor.java:241] [main] Processing chromosome scaffold37498 Processing chromosome scaffold37498 INFO [2014-07-02 15:09:05,204] [Preprocessor.java:241] [main] Processing chromosome scaffold37500 Processing chromosome scaffold37500 INFO [2014-07-02 15:09:05,229] [Preprocessor.java:241] [main] Processing chromosome scaffold37508 Processing chromosome scaffold37508 INFO [2014-07-02 15:09:05,238] [Preprocessor.java:241] [main] Processing chromosome scaffold37512 Processing chromosome scaffold37512 INFO [2014-07-02 15:09:05,280] [Preprocessor.java:241] [main] Processing chromosome scaffold37516 Processing chromosome scaffold37516 INFO [2014-07-02 15:09:05,295] [Preprocessor.java:241] [main] Processing chromosome scaffold37520 Processing chromosome scaffold37520 INFO [2014-07-02 15:09:05,301] [Preprocessor.java:241] [main] Processing chromosome scaffold37532 Processing chromosome scaffold37532 INFO [2014-07-02 15:09:05,314] [Preprocessor.java:241] [main] Processing chromosome scaffold37540 Processing chromosome scaffold37540 INFO [2014-07-02 15:09:05,346] [Preprocessor.java:241] [main] Processing chromosome scaffold37548 Processing chromosome scaffold37548 INFO [2014-07-02 15:09:05,354] [Preprocessor.java:241] [main] Processing chromosome scaffold37554 Processing chromosome scaffold37554 INFO [2014-07-02 15:09:05,380] [Preprocessor.java:241] [main] Processing chromosome scaffold37558 Processing chromosome scaffold37558 INFO [2014-07-02 15:09:05,388] [Preprocessor.java:241] [main] Processing chromosome scaffold37576 Processing chromosome scaffold37576 INFO [2014-07-02 15:09:05,415] [Preprocessor.java:241] [main] Processing chromosome scaffold37584 Processing chromosome scaffold37584 INFO [2014-07-02 15:09:05,419] [Preprocessor.java:241] [main] Processing chromosome scaffold376 Processing chromosome scaffold376 INFO [2014-07-02 15:09:05,590] [Preprocessor.java:241] [main] Processing chromosome scaffold37622 Processing chromosome scaffold37622 INFO [2014-07-02 15:09:05,619] [Preprocessor.java:241] [main] Processing chromosome scaffold37662 Processing chromosome scaffold37662 INFO [2014-07-02 15:09:05,627] [Preprocessor.java:241] [main] Processing chromosome scaffold37664 Processing chromosome scaffold37664 INFO [2014-07-02 15:09:05,663] [Preprocessor.java:241] [main] Processing chromosome scaffold37668 Processing chromosome scaffold37668 INFO [2014-07-02 15:09:05,685] [Preprocessor.java:241] [main] Processing chromosome scaffold37672 Processing chromosome scaffold37672 INFO [2014-07-02 15:09:05,694] [Preprocessor.java:241] [main] Processing chromosome scaffold37678 Processing chromosome scaffold37678 INFO [2014-07-02 15:09:05,716] [Preprocessor.java:241] [main] Processing chromosome scaffold37680 Processing chromosome scaffold37680 INFO [2014-07-02 15:09:05,765] [Preprocessor.java:241] [main] Processing chromosome scaffold37690 Processing chromosome scaffold37690 INFO [2014-07-02 15:09:05,809] [Preprocessor.java:241] [main] Processing chromosome scaffold37698 Processing chromosome scaffold37698 INFO [2014-07-02 15:09:05,816] [Preprocessor.java:241] [main] Processing chromosome scaffold377 Processing chromosome scaffold377 INFO [2014-07-02 15:09:05,892] [Preprocessor.java:241] [main] Processing chromosome scaffold37712 Processing chromosome scaffold37712 INFO [2014-07-02 15:09:05,914] [Preprocessor.java:241] [main] Processing chromosome scaffold37718 Processing chromosome scaffold37718 INFO [2014-07-02 15:09:05,922] [Preprocessor.java:241] [main] Processing chromosome scaffold37720 Processing chromosome scaffold37720 INFO [2014-07-02 15:09:05,929] [Preprocessor.java:241] [main] Processing chromosome scaffold37722 Processing chromosome scaffold37722 INFO [2014-07-02 15:09:05,936] [Preprocessor.java:241] [main] Processing chromosome scaffold37724 Processing chromosome scaffold37724 INFO [2014-07-02 15:09:05,954] [Preprocessor.java:241] [main] Processing chromosome scaffold37730 Processing chromosome scaffold37730 INFO [2014-07-02 15:09:05,967] [Preprocessor.java:241] [main] Processing chromosome scaffold37732 Processing chromosome scaffold37732 INFO [2014-07-02 15:09:05,994] [Preprocessor.java:241] [main] Processing chromosome scaffold37738 Processing chromosome scaffold37738 INFO [2014-07-02 15:09:06,036] [Preprocessor.java:241] [main] Processing chromosome scaffold37740 Processing chromosome scaffold37740 INFO [2014-07-02 15:09:06,073] [Preprocessor.java:241] [main] Processing chromosome scaffold37746 Processing chromosome scaffold37746 INFO [2014-07-02 15:09:06,086] [Preprocessor.java:241] [main] Processing chromosome scaffold37748 Processing chromosome scaffold37748 INFO [2014-07-02 15:09:06,109] [Preprocessor.java:241] [main] Processing chromosome scaffold37756 Processing chromosome scaffold37756 INFO [2014-07-02 15:09:06,116] [Preprocessor.java:241] [main] Processing chromosome scaffold37758 Processing chromosome scaffold37758 INFO [2014-07-02 15:09:06,125] [Preprocessor.java:241] [main] Processing chromosome scaffold37760 Processing chromosome scaffold37760 INFO [2014-07-02 15:09:06,143] [Preprocessor.java:241] [main] Processing chromosome scaffold37772 Processing chromosome scaffold37772 INFO [2014-07-02 15:09:06,165] [Preprocessor.java:241] [main] Processing chromosome scaffold37788 Processing chromosome scaffold37788 INFO [2014-07-02 15:09:06,172] [Preprocessor.java:241] [main] Processing chromosome scaffold37790 Processing chromosome scaffold37790 INFO [2014-07-02 15:09:06,179] [Preprocessor.java:241] [main] Processing chromosome scaffold37794 Processing chromosome scaffold37794 INFO [2014-07-02 15:09:06,200] [Preprocessor.java:241] [main] Processing chromosome scaffold378 Processing chromosome scaffold378 INFO [2014-07-02 15:09:12,642] [Preprocessor.java:241] [main] Processing chromosome scaffold37808 Processing chromosome scaffold37808 INFO [2014-07-02 15:09:12,646] [Preprocessor.java:241] [main] Processing chromosome scaffold37816 Processing chromosome scaffold37816 INFO [2014-07-02 15:09:12,649] [Preprocessor.java:241] [main] Processing chromosome scaffold37834 Processing chromosome scaffold37834 INFO [2014-07-02 15:09:12,664] [Preprocessor.java:241] [main] Processing chromosome scaffold37838 Processing chromosome scaffold37838 INFO [2014-07-02 15:09:12,676] [Preprocessor.java:241] [main] Processing chromosome scaffold37844 Processing chromosome scaffold37844 INFO [2014-07-02 15:09:12,705] [Preprocessor.java:241] [main] Processing chromosome scaffold37850 Processing chromosome scaffold37850 INFO [2014-07-02 15:09:12,726] [Preprocessor.java:241] [main] Processing chromosome scaffold37856 Processing chromosome scaffold37856 INFO [2014-07-02 15:09:12,740] [Preprocessor.java:241] [main] Processing chromosome scaffold37858 Processing chromosome scaffold37858 INFO [2014-07-02 15:09:12,769] [Preprocessor.java:241] [main] Processing chromosome scaffold37874 Processing chromosome scaffold37874 INFO [2014-07-02 15:09:12,781] [Preprocessor.java:241] [main] Processing chromosome scaffold37876 Processing chromosome scaffold37876 INFO [2014-07-02 15:09:12,791] [Preprocessor.java:241] [main] Processing chromosome scaffold37880 Processing chromosome scaffold37880 INFO [2014-07-02 15:09:12,818] [Preprocessor.java:241] [main] Processing chromosome scaffold37884 Processing chromosome scaffold37884 INFO [2014-07-02 15:09:12,863] [Preprocessor.java:241] [main] Processing chromosome scaffold37892 Processing chromosome scaffold37892 INFO [2014-07-02 15:09:12,872] [Preprocessor.java:241] [main] Processing chromosome scaffold379 Processing chromosome scaffold379 INFO [2014-07-02 15:09:12,875] [Preprocessor.java:241] [main] Processing chromosome scaffold37900 Processing chromosome scaffold37900 INFO [2014-07-02 15:09:12,891] [Preprocessor.java:241] [main] Processing chromosome scaffold37902 Processing chromosome scaffold37902 INFO [2014-07-02 15:09:12,901] [Preprocessor.java:241] [main] Processing chromosome scaffold37906 Processing chromosome scaffold37906 INFO [2014-07-02 15:09:12,910] [Preprocessor.java:241] [main] Processing chromosome scaffold37938 Processing chromosome scaffold37938 INFO [2014-07-02 15:09:12,922] [Preprocessor.java:241] [main] Processing chromosome scaffold37944 Processing chromosome scaffold37944 INFO [2014-07-02 15:09:12,932] [Preprocessor.java:241] [main] Processing chromosome scaffold37946 Processing chromosome scaffold37946 INFO [2014-07-02 15:09:12,948] [Preprocessor.java:241] [main] Processing chromosome scaffold37966 Processing chromosome scaffold37966 INFO [2014-07-02 15:09:12,968] [Preprocessor.java:241] [main] Processing chromosome scaffold37968 Processing chromosome scaffold37968 INFO [2014-07-02 15:09:12,973] [Preprocessor.java:241] [main] Processing chromosome scaffold37972 Processing chromosome scaffold37972 INFO [2014-07-02 15:09:12,992] [Preprocessor.java:241] [main] Processing chromosome scaffold37990 Processing chromosome scaffold37990 INFO [2014-07-02 15:09:13,002] [Preprocessor.java:241] [main] Processing chromosome scaffold37992 Processing chromosome scaffold37992 INFO [2014-07-02 15:09:13,023] [Preprocessor.java:241] [main] Processing chromosome scaffold38 Processing chromosome scaffold38 INFO [2014-07-02 15:09:13,027] [Preprocessor.java:241] [main] Processing chromosome scaffold38002 Processing chromosome scaffold38002 INFO [2014-07-02 15:09:13,071] [Preprocessor.java:241] [main] Processing chromosome scaffold38006 Processing chromosome scaffold38006 INFO [2014-07-02 15:09:13,101] [Preprocessor.java:241] [main] Processing chromosome scaffold38010 Processing chromosome scaffold38010 INFO [2014-07-02 15:09:13,126] [Preprocessor.java:241] [main] Processing chromosome scaffold38020 Processing chromosome scaffold38020 INFO [2014-07-02 15:09:13,135] [Preprocessor.java:241] [main] Processing chromosome scaffold38024 Processing chromosome scaffold38024 INFO [2014-07-02 15:09:13,152] [Preprocessor.java:241] [main] Processing chromosome scaffold38026 Processing chromosome scaffold38026 INFO [2014-07-02 15:09:13,202] [Preprocessor.java:241] [main] Processing chromosome scaffold38030 Processing chromosome scaffold38030 INFO [2014-07-02 15:09:13,259] [Preprocessor.java:241] [main] Processing chromosome scaffold38034 Processing chromosome scaffold38034 INFO [2014-07-02 15:09:13,272] [Preprocessor.java:241] [main] Processing chromosome scaffold38048 Processing chromosome scaffold38048 INFO [2014-07-02 15:09:13,296] [Preprocessor.java:241] [main] Processing chromosome scaffold38054 Processing chromosome scaffold38054 INFO [2014-07-02 15:09:13,312] [Preprocessor.java:241] [main] Processing chromosome scaffold38056 Processing chromosome scaffold38056 INFO [2014-07-02 15:09:13,320] [Preprocessor.java:241] [main] Processing chromosome scaffold38058 Processing chromosome scaffold38058 INFO [2014-07-02 15:09:13,327] [Preprocessor.java:241] [main] Processing chromosome scaffold38062 Processing chromosome scaffold38062 INFO [2014-07-02 15:09:13,347] [Preprocessor.java:241] [main] Processing chromosome scaffold38066 Processing chromosome scaffold38066 INFO [2014-07-02 15:09:13,354] [Preprocessor.java:241] [main] Processing chromosome scaffold38072 Processing chromosome scaffold38072 INFO [2014-07-02 15:09:13,382] [Preprocessor.java:241] [main] Processing chromosome scaffold38078 Processing chromosome scaffold38078 INFO [2014-07-02 15:09:13,396] [Preprocessor.java:241] [main] Processing chromosome scaffold38090 Processing chromosome scaffold38090 INFO [2014-07-02 15:09:13,406] [Preprocessor.java:241] [main] Processing chromosome scaffold381 Processing chromosome scaffold381 INFO [2014-07-02 15:09:13,482] [Preprocessor.java:241] [main] Processing chromosome scaffold38108 Processing chromosome scaffold38108 INFO [2014-07-02 15:09:13,504] [Preprocessor.java:241] [main] Processing chromosome scaffold38116 Processing chromosome scaffold38116 INFO [2014-07-02 15:09:13,521] [Preprocessor.java:241] [main] Processing chromosome scaffold38130 Processing chromosome scaffold38130 INFO [2014-07-02 15:09:13,530] [Preprocessor.java:241] [main] Processing chromosome scaffold38136 Processing chromosome scaffold38136 INFO [2014-07-02 15:09:13,547] [Preprocessor.java:241] [main] Processing chromosome scaffold38148 Processing chromosome scaffold38148 INFO [2014-07-02 15:09:13,598] [Preprocessor.java:241] [main] Processing chromosome scaffold38152 Processing chromosome scaffold38152 INFO [2014-07-02 15:09:13,617] [Preprocessor.java:241] [main] Processing chromosome scaffold38162 Processing chromosome scaffold38162 INFO [2014-07-02 15:09:13,636] [Preprocessor.java:241] [main] Processing chromosome scaffold38166 Processing chromosome scaffold38166 INFO [2014-07-02 15:09:13,664] [Preprocessor.java:241] [main] Processing chromosome scaffold38174 Processing chromosome scaffold38174 INFO [2014-07-02 15:09:13,706] [Preprocessor.java:241] [main] Processing chromosome scaffold38184 Processing chromosome scaffold38184 INFO [2014-07-02 15:09:13,741] [Preprocessor.java:241] [main] Processing chromosome scaffold38186 Processing chromosome scaffold38186 INFO [2014-07-02 15:09:13,770] [Preprocessor.java:241] [main] Processing chromosome scaffold38190 Processing chromosome scaffold38190 INFO [2014-07-02 15:09:13,829] [Preprocessor.java:241] [main] Processing chromosome scaffold38194 Processing chromosome scaffold38194 INFO [2014-07-02 15:09:13,874] [Preprocessor.java:241] [main] Processing chromosome scaffold38196 Processing chromosome scaffold38196 INFO [2014-07-02 15:09:13,909] [Preprocessor.java:241] [main] Processing chromosome scaffold382 Processing chromosome scaffold382 INFO [2014-07-02 15:09:13,940] [Preprocessor.java:241] [main] Processing chromosome scaffold38210 Processing chromosome scaffold38210 INFO [2014-07-02 15:09:13,970] [Preprocessor.java:241] [main] Processing chromosome scaffold38216 Processing chromosome scaffold38216 INFO [2014-07-02 15:09:13,979] [Preprocessor.java:241] [main] Processing chromosome scaffold38220 Processing chromosome scaffold38220 INFO [2014-07-02 15:09:13,983] [Preprocessor.java:241] [main] Processing chromosome scaffold38222 Processing chromosome scaffold38222 INFO [2014-07-02 15:09:14,014] [Preprocessor.java:241] [main] Processing chromosome scaffold38256 Processing chromosome scaffold38256 INFO [2014-07-02 15:09:14,027] [Preprocessor.java:241] [main] Processing chromosome scaffold38264 Processing chromosome scaffold38264 INFO [2014-07-02 15:09:14,075] [Preprocessor.java:241] [main] Processing chromosome scaffold38270 Processing chromosome scaffold38270 INFO [2014-07-02 15:09:14,097] [Preprocessor.java:241] [main] Processing chromosome scaffold38272 Processing chromosome scaffold38272 INFO [2014-07-02 15:09:14,107] [Preprocessor.java:241] [main] Processing chromosome scaffold38274 Processing chromosome scaffold38274 INFO [2014-07-02 15:09:14,141] [Preprocessor.java:241] [main] Processing chromosome scaffold38276 Processing chromosome scaffold38276 INFO [2014-07-02 15:09:14,215] [Preprocessor.java:241] [main] Processing chromosome scaffold38284 Processing chromosome scaffold38284 INFO [2014-07-02 15:09:14,236] [Preprocessor.java:241] [main] Processing chromosome scaffold38290 Processing chromosome scaffold38290 INFO [2014-07-02 15:09:14,266] [Preprocessor.java:241] [main] Processing chromosome scaffold38292 Processing chromosome scaffold38292 INFO [2014-07-02 15:09:14,291] [Preprocessor.java:241] [main] Processing chromosome scaffold38298 Processing chromosome scaffold38298 INFO [2014-07-02 15:09:14,318] [Preprocessor.java:241] [main] Processing chromosome scaffold383 Processing chromosome scaffold383 20.0% INFO [2014-07-02 15:09:14,493] [Preprocessor.java:241] [main] Processing chromosome scaffold38302 Processing chromosome scaffold38302 INFO [2014-07-02 15:09:14,508] [Preprocessor.java:241] [main] Processing chromosome scaffold38306 Processing chromosome scaffold38306 INFO [2014-07-02 15:09:14,534] [Preprocessor.java:241] [main] Processing chromosome scaffold38310 Processing chromosome scaffold38310 INFO [2014-07-02 15:09:14,541] [Preprocessor.java:241] [main] Processing chromosome scaffold38348 Processing chromosome scaffold38348 INFO [2014-07-02 15:09:14,566] [Preprocessor.java:241] [main] Processing chromosome scaffold38354 Processing chromosome scaffold38354 INFO [2014-07-02 15:09:14,603] [Preprocessor.java:241] [main] Processing chromosome scaffold38360 Processing chromosome scaffold38360 INFO [2014-07-02 15:09:14,610] [Preprocessor.java:241] [main] Processing chromosome scaffold38364 Processing chromosome scaffold38364 INFO [2014-07-02 15:09:14,640] [Preprocessor.java:241] [main] Processing chromosome scaffold38366 Processing chromosome scaffold38366 INFO [2014-07-02 15:09:14,667] [Preprocessor.java:241] [main] Processing chromosome scaffold38370 Processing chromosome scaffold38370 INFO [2014-07-02 15:09:14,683] [Preprocessor.java:241] [main] Processing chromosome scaffold38372 Processing chromosome scaffold38372 INFO [2014-07-02 15:09:21,912] [Preprocessor.java:241] [main] Processing chromosome scaffold38374 Processing chromosome scaffold38374 INFO [2014-07-02 15:09:21,924] [Preprocessor.java:241] [main] Processing chromosome scaffold38376 Processing chromosome scaffold38376 INFO [2014-07-02 15:09:21,941] [Preprocessor.java:241] [main] Processing chromosome scaffold38378 Processing chromosome scaffold38378 INFO [2014-07-02 15:09:21,945] [Preprocessor.java:241] [main] Processing chromosome scaffold38382 Processing chromosome scaffold38382 INFO [2014-07-02 15:09:22,004] [Preprocessor.java:241] [main] Processing chromosome scaffold384 Processing chromosome scaffold384 INFO [2014-07-02 15:09:22,023] [Preprocessor.java:241] [main] Processing chromosome scaffold38400 Processing chromosome scaffold38400 INFO [2014-07-02 15:09:22,046] [Preprocessor.java:241] [main] Processing chromosome scaffold38414 Processing chromosome scaffold38414 INFO [2014-07-02 15:09:22,049] [Preprocessor.java:241] [main] Processing chromosome scaffold38422 Processing chromosome scaffold38422 INFO [2014-07-02 15:09:22,060] [Preprocessor.java:241] [main] Processing chromosome scaffold38438 Processing chromosome scaffold38438 INFO [2014-07-02 15:09:22,068] [Preprocessor.java:241] [main] Processing chromosome scaffold38444 Processing chromosome scaffold38444 INFO [2014-07-02 15:09:22,095] [Preprocessor.java:241] [main] Processing chromosome scaffold38448 Processing chromosome scaffold38448 INFO [2014-07-02 15:09:22,135] [Preprocessor.java:241] [main] Processing chromosome scaffold38458 Processing chromosome scaffold38458 INFO [2014-07-02 15:09:22,146] [Preprocessor.java:241] [main] Processing chromosome scaffold38464 Processing chromosome scaffold38464 INFO [2014-07-02 15:09:22,189] [Preprocessor.java:241] [main] Processing chromosome scaffold38466 Processing chromosome scaffold38466 INFO [2014-07-02 15:09:22,230] [Preprocessor.java:241] [main] Processing chromosome scaffold38468 Processing chromosome scaffold38468 INFO [2014-07-02 15:09:22,267] [Preprocessor.java:241] [main] Processing chromosome scaffold38480 Processing chromosome scaffold38480 INFO [2014-07-02 15:09:22,283] [Preprocessor.java:241] [main] Processing chromosome scaffold38492 Processing chromosome scaffold38492 INFO [2014-07-02 15:09:22,316] [Preprocessor.java:241] [main] Processing chromosome scaffold38494 Processing chromosome scaffold38494 INFO [2014-07-02 15:09:22,356] [Preprocessor.java:241] [main] Processing chromosome scaffold38498 Processing chromosome scaffold38498 INFO [2014-07-02 15:09:22,374] [Preprocessor.java:241] [main] Processing chromosome scaffold385 Processing chromosome scaffold385 INFO [2014-07-02 15:09:22,406] [Preprocessor.java:241] [main] Processing chromosome scaffold38508 Processing chromosome scaffold38508 INFO [2014-07-02 15:09:22,441] [Preprocessor.java:241] [main] Processing chromosome scaffold38510 Processing chromosome scaffold38510 INFO [2014-07-02 15:09:22,486] [Preprocessor.java:241] [main] Processing chromosome scaffold38514 Processing chromosome scaffold38514 INFO [2014-07-02 15:09:22,501] [Preprocessor.java:241] [main] Processing chromosome scaffold38524 Processing chromosome scaffold38524 INFO [2014-07-02 15:09:22,520] [Preprocessor.java:241] [main] Processing chromosome scaffold38532 Processing chromosome scaffold38532 INFO [2014-07-02 15:09:22,551] [Preprocessor.java:241] [main] Processing chromosome scaffold38546 Processing chromosome scaffold38546 INFO [2014-07-02 15:09:22,586] [Preprocessor.java:241] [main] Processing chromosome scaffold38552 Processing chromosome scaffold38552 INFO [2014-07-02 15:09:22,595] [Preprocessor.java:241] [main] Processing chromosome scaffold38558 Processing chromosome scaffold38558 INFO [2014-07-02 15:09:22,611] [Preprocessor.java:241] [main] Processing chromosome scaffold38568 Processing chromosome scaffold38568 INFO [2014-07-02 15:09:22,650] [Preprocessor.java:241] [main] Processing chromosome scaffold38576 Processing chromosome scaffold38576 INFO [2014-07-02 15:09:22,672] [Preprocessor.java:241] [main] Processing chromosome scaffold38580 Processing chromosome scaffold38580 INFO [2014-07-02 15:09:23,083] [Preprocessor.java:241] [main] Processing chromosome scaffold38596 Processing chromosome scaffold38596 INFO [2014-07-02 15:09:23,100] [Preprocessor.java:241] [main] Processing chromosome scaffold386 Processing chromosome scaffold386 INFO [2014-07-02 15:09:23,199] [Preprocessor.java:241] [main] Processing chromosome scaffold38608 Processing chromosome scaffold38608 INFO [2014-07-02 15:09:23,221] [Preprocessor.java:241] [main] Processing chromosome scaffold38612 Processing chromosome scaffold38612 INFO [2014-07-02 15:09:23,275] [Preprocessor.java:241] [main] Processing chromosome scaffold38626 Processing chromosome scaffold38626 INFO [2014-07-02 15:09:23,304] [Preprocessor.java:241] [main] Processing chromosome scaffold38638 Processing chromosome scaffold38638 INFO [2014-07-02 15:09:23,320] [Preprocessor.java:241] [main] Processing chromosome scaffold38650 Processing chromosome scaffold38650 INFO [2014-07-02 15:09:23,343] [Preprocessor.java:241] [main] Processing chromosome scaffold38654 Processing chromosome scaffold38654 INFO [2014-07-02 15:09:23,354] [Preprocessor.java:241] [main] Processing chromosome scaffold38672 Processing chromosome scaffold38672 INFO [2014-07-02 15:09:23,377] [Preprocessor.java:241] [main] Processing chromosome scaffold38674 Processing chromosome scaffold38674 INFO [2014-07-02 15:09:23,403] [Preprocessor.java:241] [main] Processing chromosome scaffold38678 Processing chromosome scaffold38678 INFO [2014-07-02 15:09:23,422] [Preprocessor.java:241] [main] Processing chromosome scaffold38686 Processing chromosome scaffold38686 INFO [2014-07-02 15:09:23,480] [Preprocessor.java:241] [main] Processing chromosome scaffold38688 Processing chromosome scaffold38688 INFO [2014-07-02 15:09:23,545] [Preprocessor.java:241] [main] Processing chromosome scaffold387 Processing chromosome scaffold387 INFO [2014-07-02 15:09:23,567] [Preprocessor.java:241] [main] Processing chromosome scaffold38700 Processing chromosome scaffold38700 INFO [2014-07-02 15:09:23,588] [Preprocessor.java:241] [main] Processing chromosome scaffold38704 Processing chromosome scaffold38704 INFO [2014-07-02 15:09:23,608] [Preprocessor.java:241] [main] Processing chromosome scaffold38714 Processing chromosome scaffold38714 INFO [2014-07-02 15:09:23,618] [Preprocessor.java:241] [main] Processing chromosome scaffold38736 Processing chromosome scaffold38736 INFO [2014-07-02 15:09:23,645] [Preprocessor.java:241] [main] Processing chromosome scaffold38750 Processing chromosome scaffold38750 INFO [2014-07-02 15:09:23,654] [Preprocessor.java:241] [main] Processing chromosome scaffold38752 Processing chromosome scaffold38752 INFO [2014-07-02 15:09:24,444] [Preprocessor.java:241] [main] Processing chromosome scaffold38756 Processing chromosome scaffold38756 INFO [2014-07-02 15:09:24,452] [Preprocessor.java:241] [main] Processing chromosome scaffold38764 Processing chromosome scaffold38764 INFO [2014-07-02 15:09:24,459] [Preprocessor.java:241] [main] Processing chromosome scaffold38774 Processing chromosome scaffold38774 INFO [2014-07-02 15:09:24,471] [Preprocessor.java:241] [main] Processing chromosome scaffold38780 Processing chromosome scaffold38780 INFO [2014-07-02 15:09:24,490] [Preprocessor.java:241] [main] Processing chromosome scaffold38784 Processing chromosome scaffold38784 INFO [2014-07-02 15:09:24,518] [Preprocessor.java:241] [main] Processing chromosome scaffold388 Processing chromosome scaffold388 INFO [2014-07-02 15:09:24,670] [Preprocessor.java:241] [main] Processing chromosome scaffold38804 Processing chromosome scaffold38804 INFO [2014-07-02 15:09:24,709] [Preprocessor.java:241] [main] Processing chromosome scaffold38816 Processing chromosome scaffold38816 INFO [2014-07-02 15:09:24,750] [Preprocessor.java:241] [main] Processing chromosome scaffold38818 Processing chromosome scaffold38818 INFO [2014-07-02 15:09:24,775] [Preprocessor.java:241] [main] Processing chromosome scaffold38822 Processing chromosome scaffold38822 INFO [2014-07-02 15:09:24,795] [Preprocessor.java:241] [main] Processing chromosome scaffold38824 Processing chromosome scaffold38824 INFO [2014-07-02 15:09:24,839] [Preprocessor.java:241] [main] Processing chromosome scaffold38828 Processing chromosome scaffold38828 INFO [2014-07-02 15:09:24,895] [Preprocessor.java:241] [main] Processing chromosome scaffold38848 Processing chromosome scaffold38848 INFO [2014-07-02 15:09:24,907] [Preprocessor.java:241] [main] Processing chromosome scaffold38854 Processing chromosome scaffold38854 INFO [2014-07-02 15:09:24,912] [Preprocessor.java:241] [main] Processing chromosome scaffold38856 Processing chromosome scaffold38856 INFO [2014-07-02 15:09:24,934] [Preprocessor.java:241] [main] Processing chromosome scaffold38864 Processing chromosome scaffold38864 INFO [2014-07-02 15:09:24,964] [Preprocessor.java:241] [main] Processing chromosome scaffold38876 Processing chromosome scaffold38876 INFO [2014-07-02 15:09:25,645] [Preprocessor.java:241] [main] Processing chromosome scaffold38882 Processing chromosome scaffold38882 INFO [2014-07-02 15:09:25,674] [Preprocessor.java:241] [main] Processing chromosome scaffold38884 Processing chromosome scaffold38884 INFO [2014-07-02 15:09:25,684] [Preprocessor.java:241] [main] Processing chromosome scaffold38898 Processing chromosome scaffold38898 INFO [2014-07-02 15:09:25,693] [Preprocessor.java:241] [main] Processing chromosome scaffold389 Processing chromosome scaffold389 INFO [2014-07-02 15:09:25,726] [Preprocessor.java:241] [main] Processing chromosome scaffold38900 Processing chromosome scaffold38900 INFO [2014-07-02 15:09:28,316] [Preprocessor.java:241] [main] Processing chromosome scaffold38902 Processing chromosome scaffold38902 INFO [2014-07-02 15:09:28,346] [Preprocessor.java:241] [main] Processing chromosome scaffold38904 Processing chromosome scaffold38904 INFO [2014-07-02 15:09:28,367] [Preprocessor.java:241] [main] Processing chromosome scaffold38908 Processing chromosome scaffold38908 INFO [2014-07-02 15:09:28,387] [Preprocessor.java:241] [main] Processing chromosome scaffold38912 Processing chromosome scaffold38912 INFO [2014-07-02 15:09:28,407] [Preprocessor.java:241] [main] Processing chromosome scaffold38916 Processing chromosome scaffold38916 INFO [2014-07-02 15:09:28,415] [Preprocessor.java:241] [main] Processing chromosome scaffold38920 Processing chromosome scaffold38920 INFO [2014-07-02 15:09:28,434] [Preprocessor.java:241] [main] Processing chromosome scaffold38922 Processing chromosome scaffold38922 INFO [2014-07-02 15:09:28,473] [Preprocessor.java:241] [main] Processing chromosome scaffold38934 Processing chromosome scaffold38934 INFO [2014-07-02 15:09:28,495] [Preprocessor.java:241] [main] Processing chromosome scaffold38944 Processing chromosome scaffold38944 INFO [2014-07-02 15:09:28,532] [Preprocessor.java:241] [main] Processing chromosome scaffold38952 Processing chromosome scaffold38952 INFO [2014-07-02 15:09:28,557] [Preprocessor.java:241] [main] Processing chromosome scaffold38966 Processing chromosome scaffold38966 INFO [2014-07-02 15:09:28,575] [Preprocessor.java:241] [main] Processing chromosome scaffold38974 Processing chromosome scaffold38974 INFO [2014-07-02 15:09:28,584] [Preprocessor.java:241] [main] Processing chromosome scaffold38976 Processing chromosome scaffold38976 INFO [2014-07-02 15:09:28,590] [Preprocessor.java:241] [main] Processing chromosome scaffold38978 Processing chromosome scaffold38978 INFO [2014-07-02 15:09:28,621] [Preprocessor.java:241] [main] Processing chromosome scaffold38980 Processing chromosome scaffold38980 INFO [2014-07-02 15:09:28,635] [Preprocessor.java:241] [main] Processing chromosome scaffold38984 Processing chromosome scaffold38984 INFO [2014-07-02 15:09:28,674] [Preprocessor.java:241] [main] Processing chromosome scaffold38990 Processing chromosome scaffold38990 INFO [2014-07-02 15:09:28,684] [Preprocessor.java:241] [main] Processing chromosome scaffold38996 Processing chromosome scaffold38996 INFO [2014-07-02 15:09:28,707] [Preprocessor.java:241] [main] Processing chromosome scaffold390 Processing chromosome scaffold390 INFO [2014-07-02 15:09:28,732] [Preprocessor.java:241] [main] Processing chromosome scaffold39000 Processing chromosome scaffold39000 INFO [2014-07-02 15:09:28,744] [Preprocessor.java:241] [main] Processing chromosome scaffold39008 Processing chromosome scaffold39008 INFO [2014-07-02 15:09:29,470] [Preprocessor.java:241] [main] Processing chromosome scaffold39014 Processing chromosome scaffold39014 INFO [2014-07-02 15:09:29,481] [Preprocessor.java:241] [main] Processing chromosome scaffold39028 Processing chromosome scaffold39028 INFO [2014-07-02 15:09:29,487] [Preprocessor.java:241] [main] Processing chromosome scaffold39030 Processing chromosome scaffold39030 INFO [2014-07-02 15:09:29,497] [Preprocessor.java:241] [main] Processing chromosome scaffold39040 Processing chromosome scaffold39040 INFO [2014-07-02 15:09:29,529] [Preprocessor.java:241] [main] Processing chromosome scaffold39050 Processing chromosome scaffold39050 INFO [2014-07-02 15:09:29,539] [Preprocessor.java:241] [main] Processing chromosome scaffold39064 Processing chromosome scaffold39064 INFO [2014-07-02 15:09:29,568] [Preprocessor.java:241] [main] Processing chromosome scaffold39066 Processing chromosome scaffold39066 INFO [2014-07-02 15:09:29,597] [Preprocessor.java:241] [main] Processing chromosome scaffold39068 Processing chromosome scaffold39068 INFO [2014-07-02 15:09:29,606] [Preprocessor.java:241] [main] Processing chromosome scaffold39074 Processing chromosome scaffold39074 INFO [2014-07-02 15:09:29,654] [Preprocessor.java:241] [main] Processing chromosome scaffold39078 Processing chromosome scaffold39078 INFO [2014-07-02 15:09:29,667] [Preprocessor.java:241] [main] Processing chromosome scaffold39080 Processing chromosome scaffold39080 INFO [2014-07-02 15:09:29,680] [Preprocessor.java:241] [main] Processing chromosome scaffold39088 Processing chromosome scaffold39088 INFO [2014-07-02 15:09:29,761] [Preprocessor.java:241] [main] Processing chromosome scaffold39096 Processing chromosome scaffold39096 INFO [2014-07-02 15:09:29,796] [Preprocessor.java:241] [main] Processing chromosome scaffold391 Processing chromosome scaffold391 INFO [2014-07-02 15:09:29,811] [Preprocessor.java:241] [main] Processing chromosome scaffold39120 Processing chromosome scaffold39120 INFO [2014-07-02 15:09:29,823] [Preprocessor.java:241] [main] Processing chromosome scaffold39122 Processing chromosome scaffold39122 INFO [2014-07-02 15:09:29,851] [Preprocessor.java:241] [main] Processing chromosome scaffold39126 Processing chromosome scaffold39126 INFO [2014-07-02 15:09:29,909] [Preprocessor.java:241] [main] Processing chromosome scaffold39134 Processing chromosome scaffold39134 INFO [2014-07-02 15:09:29,956] [Preprocessor.java:241] [main] Processing chromosome scaffold39142 Processing chromosome scaffold39142 INFO [2014-07-02 15:09:29,983] [Preprocessor.java:241] [main] Processing chromosome scaffold39144 Processing chromosome scaffold39144 INFO [2014-07-02 15:09:29,996] [Preprocessor.java:241] [main] Processing chromosome scaffold39156 Processing chromosome scaffold39156 INFO [2014-07-02 15:09:30,692] [Preprocessor.java:241] [main] Processing chromosome scaffold39158 Processing chromosome scaffold39158 INFO [2014-07-02 15:09:30,705] [Preprocessor.java:241] [main] Processing chromosome scaffold39174 Processing chromosome scaffold39174 INFO [2014-07-02 15:09:30,715] [Preprocessor.java:241] [main] Processing chromosome scaffold39176 Processing chromosome scaffold39176 INFO [2014-07-02 15:09:30,729] [Preprocessor.java:241] [main] Processing chromosome scaffold39180 Processing chromosome scaffold39180 INFO [2014-07-02 15:09:30,756] [Preprocessor.java:241] [main] Processing chromosome scaffold39184 Processing chromosome scaffold39184 INFO [2014-07-02 15:09:30,763] [Preprocessor.java:241] [main] Processing chromosome scaffold39196 Processing chromosome scaffold39196 INFO [2014-07-02 15:09:30,788] [Preprocessor.java:241] [main] Processing chromosome scaffold39198 Processing chromosome scaffold39198 INFO [2014-07-02 15:09:30,821] [Preprocessor.java:241] [main] Processing chromosome scaffold392 Processing chromosome scaffold392 INFO [2014-07-02 15:09:30,901] [Preprocessor.java:241] [main] Processing chromosome scaffold39202 Processing chromosome scaffold39202 INFO [2014-07-02 15:09:30,921] [Preprocessor.java:241] [main] Processing chromosome scaffold39212 Processing chromosome scaffold39212 INFO [2014-07-02 15:09:30,953] [Preprocessor.java:241] [main] Processing chromosome scaffold39214 Processing chromosome scaffold39214 INFO [2014-07-02 15:09:30,984] [Preprocessor.java:241] [main] Processing chromosome scaffold39220 Processing chromosome scaffold39220 INFO [2014-07-02 15:09:30,998] [Preprocessor.java:241] [main] Processing chromosome scaffold39222 Processing chromosome scaffold39222 INFO [2014-07-02 15:09:31,029] [Preprocessor.java:241] [main] Processing chromosome scaffold39240 Processing chromosome scaffold39240 INFO [2014-07-02 15:09:31,053] [Preprocessor.java:241] [main] Processing chromosome scaffold39244 Processing chromosome scaffold39244 INFO [2014-07-02 15:09:31,061] [Preprocessor.java:241] [main] Processing chromosome scaffold39258 Processing chromosome scaffold39258 INFO [2014-07-02 15:09:31,111] [Preprocessor.java:241] [main] Processing chromosome scaffold39262 Processing chromosome scaffold39262 INFO [2014-07-02 15:09:31,144] [Preprocessor.java:241] [main] Processing chromosome scaffold39268 Processing chromosome scaffold39268 INFO [2014-07-02 15:09:31,173] [Preprocessor.java:241] [main] Processing chromosome scaffold39272 Processing chromosome scaffold39272 INFO [2014-07-02 15:09:31,193] [Preprocessor.java:241] [main] Processing chromosome scaffold39274 Processing chromosome scaffold39274 INFO [2014-07-02 15:09:31,218] [Preprocessor.java:241] [main] Processing chromosome scaffold39292 Processing chromosome scaffold39292 INFO [2014-07-02 15:09:31,227] [Preprocessor.java:241] [main] Processing chromosome scaffold393 Processing chromosome scaffold393 INFO [2014-07-02 15:09:32,079] [Preprocessor.java:241] [main] Processing chromosome scaffold39316 Processing chromosome scaffold39316 INFO [2014-07-02 15:09:32,111] [Preprocessor.java:241] [main] Processing chromosome scaffold39320 Processing chromosome scaffold39320 INFO [2014-07-02 15:09:32,133] [Preprocessor.java:241] [main] Processing chromosome scaffold39326 Processing chromosome scaffold39326 INFO [2014-07-02 15:09:32,171] [Preprocessor.java:241] [main] Processing chromosome scaffold39334 Processing chromosome scaffold39334 INFO [2014-07-02 15:09:32,185] [Preprocessor.java:241] [main] Processing chromosome scaffold39346 Processing chromosome scaffold39346 INFO [2014-07-02 15:09:32,194] [Preprocessor.java:241] [main] Processing chromosome scaffold39352 Processing chromosome scaffold39352 INFO [2014-07-02 15:09:32,245] [Preprocessor.java:241] [main] Processing chromosome scaffold39358 Processing chromosome scaffold39358 INFO [2014-07-02 15:09:32,259] [Preprocessor.java:241] [main] Processing chromosome scaffold39364 Processing chromosome scaffold39364 INFO [2014-07-02 15:09:32,337] [Preprocessor.java:241] [main] Processing chromosome scaffold39366 Processing chromosome scaffold39366 INFO [2014-07-02 15:09:32,358] [Preprocessor.java:241] [main] Processing chromosome scaffold39368 Processing chromosome scaffold39368 INFO [2014-07-02 15:09:32,411] [Preprocessor.java:241] [main] Processing chromosome scaffold39380 Processing chromosome scaffold39380 INFO [2014-07-02 15:09:32,429] [Preprocessor.java:241] [main] Processing chromosome scaffold39384 Processing chromosome scaffold39384 INFO [2014-07-02 15:09:32,435] [Preprocessor.java:241] [main] Processing chromosome scaffold39390 Processing chromosome scaffold39390 INFO [2014-07-02 15:09:32,489] [Preprocessor.java:241] [main] Processing chromosome scaffold39394 Processing chromosome scaffold39394 INFO [2014-07-02 15:09:32,504] [Preprocessor.java:241] [main] Processing chromosome scaffold394 Processing chromosome scaffold394 INFO [2014-07-02 15:09:39,228] [Preprocessor.java:241] [main] Processing chromosome scaffold39410 Processing chromosome scaffold39410 INFO [2014-07-02 15:09:39,256] [Preprocessor.java:241] [main] Processing chromosome scaffold39412 Processing chromosome scaffold39412 INFO [2014-07-02 15:09:39,295] [Preprocessor.java:241] [main] Processing chromosome scaffold39424 Processing chromosome scaffold39424 INFO [2014-07-02 15:09:39,310] [Preprocessor.java:241] [main] Processing chromosome scaffold39464 Processing chromosome scaffold39464 INFO [2014-07-02 15:09:39,335] [Preprocessor.java:241] [main] Processing chromosome scaffold39470 Processing chromosome scaffold39470 INFO [2014-07-02 15:09:39,382] [Preprocessor.java:241] [main] Processing chromosome scaffold39472 Processing chromosome scaffold39472 INFO [2014-07-02 15:09:39,407] [Preprocessor.java:241] [main] Processing chromosome scaffold39476 Processing chromosome scaffold39476 INFO [2014-07-02 15:09:39,435] [Preprocessor.java:241] [main] Processing chromosome scaffold39482 Processing chromosome scaffold39482 INFO [2014-07-02 15:09:39,454] [Preprocessor.java:241] [main] Processing chromosome scaffold39488 Processing chromosome scaffold39488 INFO [2014-07-02 15:09:39,513] [Preprocessor.java:241] [main] Processing chromosome scaffold395 Processing chromosome scaffold395 INFO [2014-07-02 15:09:39,612] [Preprocessor.java:241] [main] Processing chromosome scaffold39500 Processing chromosome scaffold39500 INFO [2014-07-02 15:09:39,628] [Preprocessor.java:241] [main] Processing chromosome scaffold39508 Processing chromosome scaffold39508 INFO [2014-07-02 15:09:39,640] [Preprocessor.java:241] [main] Processing chromosome scaffold39514 Processing chromosome scaffold39514 INFO [2014-07-02 15:09:39,676] [Preprocessor.java:241] [main] Processing chromosome scaffold39522 Processing chromosome scaffold39522 INFO [2014-07-02 15:09:39,735] [Preprocessor.java:241] [main] Processing chromosome scaffold39524 Processing chromosome scaffold39524 INFO [2014-07-02 15:09:39,838] [Preprocessor.java:241] [main] Processing chromosome scaffold39526 Processing chromosome scaffold39526 INFO [2014-07-02 15:09:39,869] [Preprocessor.java:241] [main] Processing chromosome scaffold39536 Processing chromosome scaffold39536 INFO [2014-07-02 15:09:39,894] [Preprocessor.java:241] [main] Processing chromosome scaffold39570 Processing chromosome scaffold39570 INFO [2014-07-02 15:09:39,915] [Preprocessor.java:241] [main] Processing chromosome scaffold39572 Processing chromosome scaffold39572 INFO [2014-07-02 15:09:39,953] [Preprocessor.java:241] [main] Processing chromosome scaffold39574 Processing chromosome scaffold39574 INFO [2014-07-02 15:09:39,986] [Preprocessor.java:241] [main] Processing chromosome scaffold39580 Processing chromosome scaffold39580 INFO [2014-07-02 15:09:40,026] [Preprocessor.java:241] [main] Processing chromosome scaffold39582 Processing chromosome scaffold39582 INFO [2014-07-02 15:09:40,051] [Preprocessor.java:241] [main] Processing chromosome scaffold39592 Processing chromosome scaffold39592 INFO [2014-07-02 15:09:40,090] [Preprocessor.java:241] [main] Processing chromosome scaffold39594 Processing chromosome scaffold39594 INFO [2014-07-02 15:09:40,111] [Preprocessor.java:241] [main] Processing chromosome scaffold39598 Processing chromosome scaffold39598 INFO [2014-07-02 15:09:40,117] [Preprocessor.java:241] [main] Processing chromosome scaffold396 Processing chromosome scaffold396 INFO [2014-07-02 15:09:40,190] [Preprocessor.java:241] [main] Processing chromosome scaffold39600 Processing chromosome scaffold39600 .INFO [2014-07-02 15:09:40,228] [Preprocessor.java:241] [main] Processing chromosome scaffold39620 Processing chromosome scaffold39620 INFO [2014-07-02 15:09:40,243] [Preprocessor.java:241] [main] Processing chromosome scaffold39624 Processing chromosome scaffold39624 INFO [2014-07-02 15:09:40,259] [Preprocessor.java:241] [main] Processing chromosome scaffold39634 Processing chromosome scaffold39634 INFO [2014-07-02 15:09:40,313] [Preprocessor.java:241] [main] Processing chromosome scaffold39640 Processing chromosome scaffold39640 INFO [2014-07-02 15:09:40,334] [Preprocessor.java:241] [main] Processing chromosome scaffold39642 Processing chromosome scaffold39642 INFO [2014-07-02 15:09:40,353] [Preprocessor.java:241] [main] Processing chromosome scaffold39652 Processing chromosome scaffold39652 INFO [2014-07-02 15:09:40,363] [Preprocessor.java:241] [main] Processing chromosome scaffold39688 Processing chromosome scaffold39688 INFO [2014-07-02 15:09:40,407] [Preprocessor.java:241] [main] Processing chromosome scaffold39694 Processing chromosome scaffold39694 INFO [2014-07-02 15:09:40,430] [Preprocessor.java:241] [main] Processing chromosome scaffold39696 Processing chromosome scaffold39696 INFO [2014-07-02 15:09:40,462] [Preprocessor.java:241] [main] Processing chromosome scaffold397 Processing chromosome scaffold397 INFO [2014-07-02 15:09:40,480] [Preprocessor.java:241] [main] Processing chromosome scaffold39712 Processing chromosome scaffold39712 INFO [2014-07-02 15:09:40,503] [Preprocessor.java:241] [main] Processing chromosome scaffold39716 Processing chromosome scaffold39716 INFO [2014-07-02 15:09:40,570] [Preprocessor.java:241] [main] Processing chromosome scaffold39720 Processing chromosome scaffold39720 INFO [2014-07-02 15:09:40,617] [Preprocessor.java:241] [main] Processing chromosome scaffold39724 Processing chromosome scaffold39724 INFO [2014-07-02 15:09:40,661] [Preprocessor.java:241] [main] Processing chromosome scaffold39730 Processing chromosome scaffold39730 INFO [2014-07-02 15:09:40,713] [Preprocessor.java:241] [main] Processing chromosome scaffold39732 Processing chromosome scaffold39732 INFO [2014-07-02 15:09:40,752] [Preprocessor.java:241] [main] Processing chromosome scaffold39740 Processing chromosome scaffold39740 INFO [2014-07-02 15:09:40,806] [Preprocessor.java:241] [main] Processing chromosome scaffold39744 Processing chromosome scaffold39744 INFO [2014-07-02 15:09:40,863] [Preprocessor.java:241] [main] Processing chromosome scaffold39754 Processing chromosome scaffold39754 INFO [2014-07-02 15:09:40,976] [Preprocessor.java:241] [main] Processing chromosome scaffold39758 Processing chromosome scaffold39758 INFO [2014-07-02 15:09:43,072] [Preprocessor.java:241] [main] Processing chromosome scaffold39778 Processing chromosome scaffold39778 INFO [2014-07-02 15:09:43,122] [Preprocessor.java:241] [main] Processing chromosome scaffold39790 Processing chromosome scaffold39790 INFO [2014-07-02 15:09:43,154] [Preprocessor.java:241] [main] Processing chromosome scaffold398 Processing chromosome scaffold398 INFO [2014-07-02 15:09:43,189] [Preprocessor.java:241] [main] Processing chromosome scaffold39800 Processing chromosome scaffold39800 INFO [2014-07-02 15:09:43,212] [Preprocessor.java:241] [main] Processing chromosome scaffold39804 Processing chromosome scaffold39804 INFO [2014-07-02 15:09:43,246] [Preprocessor.java:241] [main] Processing chromosome scaffold39858 Processing chromosome scaffold39858 INFO [2014-07-02 15:09:43,257] [Preprocessor.java:241] [main] Processing chromosome scaffold39878 Processing chromosome scaffold39878 INFO [2014-07-02 15:09:43,285] [Preprocessor.java:241] [main] Processing chromosome scaffold39880 Processing chromosome scaffold39880 INFO [2014-07-02 15:09:43,305] [Preprocessor.java:241] [main] Processing chromosome scaffold39884 Processing chromosome scaffold39884 INFO [2014-07-02 15:09:43,341] [Preprocessor.java:241] [main] Processing chromosome scaffold39894 Processing chromosome scaffold39894 INFO [2014-07-02 15:09:43,374] [Preprocessor.java:241] [main] Processing chromosome scaffold399 Processing chromosome scaffold399 INFO [2014-07-02 15:09:43,437] [Preprocessor.java:241] [main] Processing chromosome scaffold39900 Processing chromosome scaffold39900 INFO [2014-07-02 15:09:43,452] [Preprocessor.java:241] [main] Processing chromosome scaffold39946 Processing chromosome scaffold39946 INFO [2014-07-02 15:09:43,468] [Preprocessor.java:241] [main] Processing chromosome scaffold39958 Processing chromosome scaffold39958 INFO [2014-07-02 15:09:43,484] [Preprocessor.java:241] [main] Processing chromosome scaffold39960 Processing chromosome scaffold39960 INFO [2014-07-02 15:09:43,533] [Preprocessor.java:241] [main] Processing chromosome scaffold39966 Processing chromosome scaffold39966 INFO [2014-07-02 15:09:43,549] [Preprocessor.java:241] [main] Processing chromosome scaffold39972 Processing chromosome scaffold39972 INFO [2014-07-02 15:09:43,568] [Preprocessor.java:241] [main] Processing chromosome scaffold39974 Processing chromosome scaffold39974 INFO [2014-07-02 15:09:43,588] [Preprocessor.java:241] [main] Processing chromosome scaffold39976 Processing chromosome scaffold39976 INFO [2014-07-02 15:09:43,596] [Preprocessor.java:241] [main] Processing chromosome scaffold39984 Processing chromosome scaffold39984 INFO [2014-07-02 15:09:43,612] [Preprocessor.java:241] [main] Processing chromosome scaffold39986 Processing chromosome scaffold39986 INFO [2014-07-02 15:09:43,656] [Preprocessor.java:241] [main] Processing chromosome scaffold39990 Processing chromosome scaffold39990 INFO [2014-07-02 15:09:43,700] [Preprocessor.java:241] [main] Processing chromosome scaffold39998 Processing chromosome scaffold39998 INFO [2014-07-02 15:09:43,732] [Preprocessor.java:241] [main] Processing chromosome scaffold4 Processing chromosome scaffold4 INFO [2014-07-02 15:09:43,851] [Preprocessor.java:241] [main] Processing chromosome scaffold40 Processing chromosome scaffold40 INFO [2014-07-02 15:09:43,881] [Preprocessor.java:241] [main] Processing chromosome scaffold400 Processing chromosome scaffold400 INFO [2014-07-02 15:09:43,944] [Preprocessor.java:241] [main] Processing chromosome scaffold40002 Processing chromosome scaffold40002 INFO [2014-07-02 15:09:43,986] [Preprocessor.java:241] [main] Processing chromosome scaffold40006 Processing chromosome scaffold40006 INFO [2014-07-02 15:09:44,025] [Preprocessor.java:241] [main] Processing chromosome scaffold40010 Processing chromosome scaffold40010 INFO [2014-07-02 15:09:44,043] [Preprocessor.java:241] [main] Processing chromosome scaffold40016 Processing chromosome scaffold40016 INFO [2014-07-02 15:09:44,076] [Preprocessor.java:241] [main] Processing chromosome scaffold40026 Processing chromosome scaffold40026 INFO [2014-07-02 15:09:44,108] [Preprocessor.java:241] [main] Processing chromosome scaffold40030 Processing chromosome scaffold40030 INFO [2014-07-02 15:09:44,150] [Preprocessor.java:241] [main] Processing chromosome scaffold40038 Processing chromosome scaffold40038 INFO [2014-07-02 15:09:44,210] [Preprocessor.java:241] [main] Processing chromosome scaffold40050 Processing chromosome scaffold40050 INFO [2014-07-02 15:09:44,233] [Preprocessor.java:241] [main] Processing chromosome scaffold40054 Processing chromosome scaffold40054 INFO [2014-07-02 15:09:44,259] [Preprocessor.java:241] [main] Processing chromosome scaffold40068 Processing chromosome scaffold40068 INFO [2014-07-02 15:09:44,272] [Preprocessor.java:241] [main] Processing chromosome scaffold40072 Processing chromosome scaffold40072 INFO [2014-07-02 15:09:44,335] [Preprocessor.java:241] [main] Processing chromosome scaffold40076 Processing chromosome scaffold40076 INFO [2014-07-02 15:09:44,368] [Preprocessor.java:241] [main] Processing chromosome scaffold40080 Processing chromosome scaffold40080 INFO [2014-07-02 15:09:44,382] [Preprocessor.java:241] [main] Processing chromosome scaffold40084 Processing chromosome scaffold40084 INFO [2014-07-02 15:09:44,442] [Preprocessor.java:241] [main] Processing chromosome scaffold40088 Processing chromosome scaffold40088 INFO [2014-07-02 15:09:44,475] [Preprocessor.java:241] [main] Processing chromosome scaffold40094 Processing chromosome scaffold40094 INFO [2014-07-02 15:09:44,528] [Preprocessor.java:241] [main] Processing chromosome scaffold401 Processing chromosome scaffold401 INFO [2014-07-02 15:09:44,596] [Preprocessor.java:241] [main] Processing chromosome scaffold40100 Processing chromosome scaffold40100 INFO [2014-07-02 15:09:44,632] [Preprocessor.java:241] [main] Processing chromosome scaffold40104 Processing chromosome scaffold40104 INFO [2014-07-02 15:09:44,661] [Preprocessor.java:241] [main] Processing chromosome scaffold40106 Processing chromosome scaffold40106 INFO [2014-07-02 15:09:44,710] [Preprocessor.java:241] [main] Processing chromosome scaffold40114 Processing chromosome scaffold40114 INFO [2014-07-02 15:09:44,750] [Preprocessor.java:241] [main] Processing chromosome scaffold40120 Processing chromosome scaffold40120 INFO [2014-07-02 15:09:44,781] [Preprocessor.java:241] [main] Processing chromosome scaffold40134 Processing chromosome scaffold40134 INFO [2014-07-02 15:09:44,819] [Preprocessor.java:241] [main] Processing chromosome scaffold40140 Processing chromosome scaffold40140 INFO [2014-07-02 15:09:44,838] [Preprocessor.java:241] [main] Processing chromosome scaffold40150 Processing chromosome scaffold40150 INFO [2014-07-02 15:09:47,463] [Preprocessor.java:241] [main] Processing chromosome scaffold40154 Processing chromosome scaffold40154 INFO [2014-07-02 15:09:47,489] [Preprocessor.java:241] [main] Processing chromosome scaffold40156 Processing chromosome scaffold40156 INFO [2014-07-02 15:09:47,520] [Preprocessor.java:241] [main] Processing chromosome scaffold40162 Processing chromosome scaffold40162 INFO [2014-07-02 15:09:47,546] [Preprocessor.java:241] [main] Processing chromosome scaffold40164 Processing chromosome scaffold40164 INFO [2014-07-02 15:09:47,561] [Preprocessor.java:241] [main] Processing chromosome scaffold40172 Processing chromosome scaffold40172 INFO [2014-07-02 15:09:47,585] [Preprocessor.java:241] [main] Processing chromosome scaffold40178 Processing chromosome scaffold40178 INFO [2014-07-02 15:09:47,596] [Preprocessor.java:241] [main] Processing chromosome scaffold40182 Processing chromosome scaffold40182 INFO [2014-07-02 15:09:47,650] [Preprocessor.java:241] [main] Processing chromosome scaffold40184 Processing chromosome scaffold40184 INFO [2014-07-02 15:09:47,694] [Preprocessor.java:241] [main] Processing chromosome scaffold40186 Processing chromosome scaffold40186 INFO [2014-07-02 15:09:47,716] [Preprocessor.java:241] [main] Processing chromosome scaffold40194 Processing chromosome scaffold40194 INFO [2014-07-02 15:09:47,740] [Preprocessor.java:241] [main] Processing chromosome scaffold40196 Processing chromosome scaffold40196 INFO [2014-07-02 15:09:47,755] [Preprocessor.java:241] [main] Processing chromosome scaffold402 Processing chromosome scaffold402 INFO [2014-07-02 15:09:47,853] [Preprocessor.java:241] [main] Processing chromosome scaffold40208 Processing chromosome scaffold40208 INFO [2014-07-02 15:09:47,882] [Preprocessor.java:241] [main] Processing chromosome scaffold40216 Processing chromosome scaffold40216 INFO [2014-07-02 15:09:47,890] [Preprocessor.java:241] [main] Processing chromosome scaffold40224 Processing chromosome scaffold40224 INFO [2014-07-02 15:09:47,915] [Preprocessor.java:241] [main] Processing chromosome scaffold40226 Processing chromosome scaffold40226 INFO [2014-07-02 15:09:47,941] [Preprocessor.java:241] [main] Processing chromosome scaffold40230 Processing chromosome scaffold40230 INFO [2014-07-02 15:09:47,986] [Preprocessor.java:241] [main] Processing chromosome scaffold40234 Processing chromosome scaffold40234 INFO [2014-07-02 15:09:48,022] [Preprocessor.java:241] [main] Processing chromosome scaffold40246 Processing chromosome scaffold40246 INFO [2014-07-02 15:09:48,073] [Preprocessor.java:241] [main] Processing chromosome scaffold40254 Processing chromosome scaffold40254 INFO [2014-07-02 15:09:49,421] [Preprocessor.java:241] [main] Processing chromosome scaffold40264 Processing chromosome scaffold40264 INFO [2014-07-02 15:09:49,448] [Preprocessor.java:241] [main] Processing chromosome scaffold40270 Processing chromosome scaffold40270 INFO [2014-07-02 15:09:49,469] [Preprocessor.java:241] [main] Processing chromosome scaffold40282 Processing chromosome scaffold40282 INFO [2014-07-02 15:09:49,514] [Preprocessor.java:241] [main] Processing chromosome scaffold40290 Processing chromosome scaffold40290 INFO [2014-07-02 15:09:49,538] [Preprocessor.java:241] [main] Processing chromosome scaffold403 Processing chromosome scaffold403 INFO [2014-07-02 15:09:49,578] [Preprocessor.java:241] [main] Processing chromosome scaffold40342 Processing chromosome scaffold40342 INFO [2014-07-02 15:09:49,583] [Preprocessor.java:241] [main] Processing chromosome scaffold40346 Processing chromosome scaffold40346 INFO [2014-07-02 15:09:49,598] [Preprocessor.java:241] [main] Processing chromosome scaffold40366 Processing chromosome scaffold40366 INFO [2014-07-02 15:09:49,615] [Preprocessor.java:241] [main] Processing chromosome scaffold40368 Processing chromosome scaffold40368 INFO [2014-07-02 15:09:49,628] [Preprocessor.java:241] [main] Processing chromosome scaffold40380 Processing chromosome scaffold40380 INFO [2014-07-02 15:09:49,668] [Preprocessor.java:241] [main] Processing chromosome scaffold40388 Processing chromosome scaffold40388 INFO [2014-07-02 15:09:49,716] [Preprocessor.java:241] [main] Processing chromosome scaffold40390 Processing chromosome scaffold40390 INFO [2014-07-02 15:09:49,792] [Preprocessor.java:241] [main] Processing chromosome scaffold40396 Processing chromosome scaffold40396 INFO [2014-07-02 15:09:49,819] [Preprocessor.java:241] [main] Processing chromosome scaffold404 Processing chromosome scaffold404 INFO [2014-07-02 15:09:49,896] [Preprocessor.java:241] [main] Processing chromosome scaffold40404 Processing chromosome scaffold40404 INFO [2014-07-02 15:09:49,924] [Preprocessor.java:241] [main] Processing chromosome scaffold40406 Processing chromosome scaffold40406 INFO [2014-07-02 15:09:50,976] [Preprocessor.java:241] [main] Processing chromosome scaffold40412 Processing chromosome scaffold40412 INFO [2014-07-02 15:09:51,003] [Preprocessor.java:241] [main] Processing chromosome scaffold40420 Processing chromosome scaffold40420 INFO [2014-07-02 15:09:51,039] [Preprocessor.java:241] [main] Processing chromosome scaffold40424 Processing chromosome scaffold40424 INFO [2014-07-02 15:09:51,054] [Preprocessor.java:241] [main] Processing chromosome scaffold40438 Processing chromosome scaffold40438 INFO [2014-07-02 15:09:51,075] [Preprocessor.java:241] [main] Processing chromosome scaffold40440 Processing chromosome scaffold40440 INFO [2014-07-02 15:09:51,111] [Preprocessor.java:241] [main] Processing chromosome scaffold40442 Processing chromosome scaffold40442 INFO [2014-07-02 15:09:51,211] [Preprocessor.java:241] [main] Processing chromosome scaffold40454 Processing chromosome scaffold40454 INFO [2014-07-02 15:09:51,240] [Preprocessor.java:241] [main] Processing chromosome scaffold40456 Processing chromosome scaffold40456 INFO [2014-07-02 15:09:51,294] [Preprocessor.java:241] [main] Processing chromosome scaffold40476 Processing chromosome scaffold40476 INFO [2014-07-02 15:09:51,338] [Preprocessor.java:241] [main] Processing chromosome scaffold40492 Processing chromosome scaffold40492 INFO [2014-07-02 15:09:51,355] [Preprocessor.java:241] [main] Processing chromosome scaffold40512 Processing chromosome scaffold40512 INFO [2014-07-02 15:09:51,389] [Preprocessor.java:241] [main] Processing chromosome scaffold40514 Processing chromosome scaffold40514 INFO [2014-07-02 15:09:51,432] [Preprocessor.java:241] [main] Processing chromosome scaffold40526 Processing chromosome scaffold40526 INFO [2014-07-02 15:09:51,469] [Preprocessor.java:241] [main] Processing chromosome scaffold40534 Processing chromosome scaffold40534 INFO [2014-07-02 15:09:54,865] [Preprocessor.java:241] [main] Processing chromosome scaffold40548 Processing chromosome scaffold40548 INFO [2014-07-02 15:09:54,904] [Preprocessor.java:241] [main] Processing chromosome scaffold40556 Processing chromosome scaffold40556 INFO [2014-07-02 15:09:54,927] [Preprocessor.java:241] [main] Processing chromosome scaffold40560 Processing chromosome scaffold40560 INFO [2014-07-02 15:09:54,940] [Preprocessor.java:241] [main] Processing chromosome scaffold40564 Processing chromosome scaffold40564 INFO [2014-07-02 15:09:54,976] [Preprocessor.java:241] [main] Processing chromosome scaffold40584 Processing chromosome scaffold40584 INFO [2014-07-02 15:09:54,992] [Preprocessor.java:241] [main] Processing chromosome scaffold40586 Processing chromosome scaffold40586 INFO [2014-07-02 15:09:55,008] [Preprocessor.java:241] [main] Processing chromosome scaffold40598 Processing chromosome scaffold40598 INFO [2014-07-02 15:09:55,062] [Preprocessor.java:241] [main] Processing chromosome scaffold406 Processing chromosome scaffold406 INFO [2014-07-02 15:09:55,152] [Preprocessor.java:241] [main] Processing chromosome scaffold40606 Processing chromosome scaffold40606 INFO [2014-07-02 15:09:55,179] [Preprocessor.java:241] [main] Processing chromosome scaffold40610 Processing chromosome scaffold40610 INFO [2014-07-02 15:09:55,184] [Preprocessor.java:241] [main] Processing chromosome scaffold40612 Processing chromosome scaffold40612 INFO [2014-07-02 15:09:55,226] [Preprocessor.java:241] [main] Processing chromosome scaffold40614 Processing chromosome scaffold40614 INFO [2014-07-02 15:09:55,245] [Preprocessor.java:241] [main] Processing chromosome scaffold40624 Processing chromosome scaffold40624 INFO [2014-07-02 15:09:55,263] [Preprocessor.java:241] [main] Processing chromosome scaffold40634 Processing chromosome scaffold40634 INFO [2014-07-02 15:09:55,292] [Preprocessor.java:241] [main] Processing chromosome scaffold40638 Processing chromosome scaffold40638 INFO [2014-07-02 15:09:55,317] [Preprocessor.java:241] [main] Processing chromosome scaffold40644 Processing chromosome scaffold40644 INFO [2014-07-02 15:09:55,340] [Preprocessor.java:241] [main] Processing chromosome scaffold40658 Processing chromosome scaffold40658 INFO [2014-07-02 15:09:56,821] [Preprocessor.java:241] [main] Processing chromosome scaffold40664 Processing chromosome scaffold40664 INFO [2014-07-02 15:09:56,864] [Preprocessor.java:241] [main] Processing chromosome scaffold40680 Processing chromosome scaffold40680 INFO [2014-07-02 15:09:56,884] [Preprocessor.java:241] [main] Processing chromosome scaffold40690 Processing chromosome scaffold40690 INFO [2014-07-02 15:09:56,894] [Preprocessor.java:241] [main] Processing chromosome scaffold407 Processing chromosome scaffold407 INFO [2014-07-02 15:09:56,922] [Preprocessor.java:241] [main] Processing chromosome scaffold40702 Processing chromosome scaffold40702 INFO [2014-07-02 15:09:56,951] [Preprocessor.java:241] [main] Processing chromosome scaffold40740 Processing chromosome scaffold40740 INFO [2014-07-02 15:09:57,021] [Preprocessor.java:241] [main] Processing chromosome scaffold40744 Processing chromosome scaffold40744 INFO [2014-07-02 15:09:57,046] [Preprocessor.java:241] [main] Processing chromosome scaffold40752 Processing chromosome scaffold40752 INFO [2014-07-02 15:09:57,051] [Preprocessor.java:241] [main] Processing chromosome scaffold40786 Processing chromosome scaffold40786 INFO [2014-07-02 15:09:57,058] [Preprocessor.java:241] [main] Processing chromosome scaffold40794 Processing chromosome scaffold40794 INFO [2014-07-02 15:09:57,069] [Preprocessor.java:241] [main] Processing chromosome scaffold408 Processing chromosome scaffold408 INFO [2014-07-02 15:09:57,172] [Preprocessor.java:241] [main] Processing chromosome scaffold40808 Processing chromosome scaffold40808 INFO [2014-07-02 15:09:57,188] [Preprocessor.java:241] [main] Processing chromosome scaffold40820 Processing chromosome scaffold40820 .INFO [2014-07-02 15:09:57,261] [Preprocessor.java:241] [main] Processing chromosome scaffold40822 Processing chromosome scaffold40822 INFO [2014-07-02 15:09:57,279] [Preprocessor.java:241] [main] Processing chromosome scaffold40828 Processing chromosome scaffold40828 INFO [2014-07-02 15:09:57,289] [Preprocessor.java:241] [main] Processing chromosome scaffold40832 Processing chromosome scaffold40832 INFO [2014-07-02 15:09:57,964] [Preprocessor.java:241] [main] Processing chromosome scaffold40836 Processing chromosome scaffold40836 INFO [2014-07-02 15:09:58,045] [Preprocessor.java:241] [main] Processing chromosome scaffold40856 Processing chromosome scaffold40856 INFO [2014-07-02 15:09:58,077] [Preprocessor.java:241] [main] Processing chromosome scaffold40868 Processing chromosome scaffold40868 INFO [2014-07-02 15:09:58,096] [Preprocessor.java:241] [main] Processing chromosome scaffold40874 Processing chromosome scaffold40874 INFO [2014-07-02 15:09:58,139] [Preprocessor.java:241] [main] Processing chromosome scaffold40894 Processing chromosome scaffold40894 INFO [2014-07-02 15:09:58,190] [Preprocessor.java:241] [main] Processing chromosome scaffold409 Processing chromosome scaffold409 INFO [2014-07-02 15:09:58,209] [Preprocessor.java:241] [main] Processing chromosome scaffold40910 Processing chromosome scaffold40910 INFO [2014-07-02 15:09:58,260] [Preprocessor.java:241] [main] Processing chromosome scaffold40916 Processing chromosome scaffold40916 INFO [2014-07-02 15:09:58,336] [Preprocessor.java:241] [main] Processing chromosome scaffold40928 Processing chromosome scaffold40928 INFO [2014-07-02 15:09:58,355] [Preprocessor.java:241] [main] Processing chromosome scaffold40938 Processing chromosome scaffold40938 INFO [2014-07-02 15:09:58,384] [Preprocessor.java:241] [main] Processing chromosome scaffold40948 Processing chromosome scaffold40948 INFO [2014-07-02 15:09:58,441] [Preprocessor.java:241] [main] Processing chromosome scaffold40950 Processing chromosome scaffold40950 INFO [2014-07-02 15:09:58,963] [Preprocessor.java:241] [main] Processing chromosome scaffold40952 Processing chromosome scaffold40952 INFO [2014-07-02 15:09:58,982] [Preprocessor.java:241] [main] Processing chromosome scaffold40960 Processing chromosome scaffold40960 INFO [2014-07-02 15:10:01,007] [Preprocessor.java:241] [main] Processing chromosome scaffold40974 Processing chromosome scaffold40974 INFO [2014-07-02 15:10:01,021] [Preprocessor.java:241] [main] Processing chromosome scaffold40980 Processing chromosome scaffold40980 INFO [2014-07-02 15:10:01,051] [Preprocessor.java:241] [main] Processing chromosome scaffold40982 Processing chromosome scaffold40982 INFO [2014-07-02 15:10:01,095] [Preprocessor.java:241] [main] Processing chromosome scaffold40988 Processing chromosome scaffold40988 INFO [2014-07-02 15:10:01,122] [Preprocessor.java:241] [main] Processing chromosome scaffold40994 Processing chromosome scaffold40994 INFO [2014-07-02 15:10:01,141] [Preprocessor.java:241] [main] Processing chromosome scaffold41 Processing chromosome scaffold41 INFO [2014-07-02 15:10:01,148] [Preprocessor.java:241] [main] Processing chromosome scaffold410 Processing chromosome scaffold410 INFO [2014-07-02 15:10:01,260] [Preprocessor.java:241] [main] Processing chromosome scaffold41008 Processing chromosome scaffold41008 INFO [2014-07-02 15:10:01,275] [Preprocessor.java:241] [main] Processing chromosome scaffold41014 Processing chromosome scaffold41014 INFO [2014-07-02 15:10:01,286] [Preprocessor.java:241] [main] Processing chromosome scaffold41022 Processing chromosome scaffold41022 INFO [2014-07-02 15:10:01,306] [Preprocessor.java:241] [main] Processing chromosome scaffold41034 Processing chromosome scaffold41034 INFO [2014-07-02 15:10:01,361] [Preprocessor.java:241] [main] Processing chromosome scaffold41054 Processing chromosome scaffold41054 INFO [2014-07-02 15:10:01,383] [Preprocessor.java:241] [main] Processing chromosome scaffold41064 Processing chromosome scaffold41064 INFO [2014-07-02 15:10:02,759] [Preprocessor.java:241] [main] Processing chromosome scaffold41082 Processing chromosome scaffold41082 INFO [2014-07-02 15:10:02,797] [Preprocessor.java:241] [main] Processing chromosome scaffold41086 Processing chromosome scaffold41086 INFO [2014-07-02 15:10:02,831] [Preprocessor.java:241] [main] Processing chromosome scaffold41090 Processing chromosome scaffold41090 INFO [2014-07-02 15:10:02,859] [Preprocessor.java:241] [main] Processing chromosome scaffold411 Processing chromosome scaffold411 INFO [2014-07-02 15:10:02,886] [Preprocessor.java:241] [main] Processing chromosome scaffold41136 Processing chromosome scaffold41136 INFO [2014-07-02 15:10:02,934] [Preprocessor.java:241] [main] Processing chromosome scaffold41162 Processing chromosome scaffold41162 INFO [2014-07-02 15:10:02,950] [Preprocessor.java:241] [main] Processing chromosome scaffold41164 Processing chromosome scaffold41164 INFO [2014-07-02 15:10:02,998] [Preprocessor.java:241] [main] Processing chromosome scaffold41174 Processing chromosome scaffold41174 INFO [2014-07-02 15:10:03,044] [Preprocessor.java:241] [main] Processing chromosome scaffold412 Processing chromosome scaffold412 INFO [2014-07-02 15:10:03,123] [Preprocessor.java:241] [main] Processing chromosome scaffold41206 Processing chromosome scaffold41206 INFO [2014-07-02 15:10:03,144] [Preprocessor.java:241] [main] Processing chromosome scaffold41210 Processing chromosome scaffold41210 INFO [2014-07-02 15:10:03,228] [Preprocessor.java:241] [main] Processing chromosome scaffold41212 Processing chromosome scaffold41212 INFO [2014-07-02 15:10:03,265] [Preprocessor.java:241] [main] Processing chromosome scaffold41214 Processing chromosome scaffold41214 INFO [2014-07-02 15:10:03,281] [Preprocessor.java:241] [main] Processing chromosome scaffold41220 Processing chromosome scaffold41220 INFO [2014-07-02 15:10:03,315] [Preprocessor.java:241] [main] Processing chromosome scaffold41228 Processing chromosome scaffold41228 INFO [2014-07-02 15:10:03,698] [Preprocessor.java:241] [main] Processing chromosome scaffold41242 Processing chromosome scaffold41242 INFO [2014-07-02 15:10:03,741] [Preprocessor.java:241] [main] Processing chromosome scaffold41248 Processing chromosome scaffold41248 INFO [2014-07-02 15:10:03,751] [Preprocessor.java:241] [main] Processing chromosome scaffold41296 Processing chromosome scaffold41296 INFO [2014-07-02 15:10:03,859] [Preprocessor.java:241] [main] Processing chromosome scaffold413 Processing chromosome scaffold413 INFO [2014-07-02 15:10:03,982] [Preprocessor.java:241] [main] Processing chromosome scaffold41304 Processing chromosome scaffold41304 INFO [2014-07-02 15:10:07,645] [Preprocessor.java:241] [main] Processing chromosome scaffold41312 Processing chromosome scaffold41312 INFO [2014-07-02 15:10:07,674] [Preprocessor.java:241] [main] Processing chromosome scaffold41316 Processing chromosome scaffold41316 INFO [2014-07-02 15:10:07,729] [Preprocessor.java:241] [main] Processing chromosome scaffold41318 Processing chromosome scaffold41318 INFO [2014-07-02 15:10:07,738] [Preprocessor.java:241] [main] Processing chromosome scaffold41344 Processing chromosome scaffold41344 INFO [2014-07-02 15:10:07,756] [Preprocessor.java:241] [main] Processing chromosome scaffold41346 Processing chromosome scaffold41346 INFO [2014-07-02 15:10:07,785] [Preprocessor.java:241] [main] Processing chromosome scaffold41356 Processing chromosome scaffold41356 INFO [2014-07-02 15:10:07,801] [Preprocessor.java:241] [main] Processing chromosome scaffold41358 Processing chromosome scaffold41358 INFO [2014-07-02 15:10:07,857] [Preprocessor.java:241] [main] Processing chromosome scaffold41372 Processing chromosome scaffold41372 INFO [2014-07-02 15:10:07,885] [Preprocessor.java:241] [main] Processing chromosome scaffold41380 Processing chromosome scaffold41380 INFO [2014-07-02 15:10:07,925] [Preprocessor.java:241] [main] Processing chromosome scaffold41388 Processing chromosome scaffold41388 INFO [2014-07-02 15:10:07,949] [Preprocessor.java:241] [main] Processing chromosome scaffold41390 Processing chromosome scaffold41390 INFO [2014-07-02 15:10:07,981] [Preprocessor.java:241] [main] Processing chromosome scaffold41398 Processing chromosome scaffold41398 INFO [2014-07-02 15:10:08,000] [Preprocessor.java:241] [main] Processing chromosome scaffold41400 Processing chromosome scaffold41400 INFO [2014-07-02 15:10:08,037] [Preprocessor.java:241] [main] Processing chromosome scaffold41416 Processing chromosome scaffold41416 INFO [2014-07-02 15:10:08,087] [Preprocessor.java:241] [main] Processing chromosome scaffold41436 Processing chromosome scaffold41436 INFO [2014-07-02 15:10:08,125] [Preprocessor.java:241] [main] Processing chromosome scaffold41442 Processing chromosome scaffold41442 INFO [2014-07-02 15:10:08,139] [Preprocessor.java:241] [main] Processing chromosome scaffold41448 Processing chromosome scaffold41448 INFO [2014-07-02 15:10:08,175] [Preprocessor.java:241] [main] Processing chromosome scaffold41452 Processing chromosome scaffold41452 INFO [2014-07-02 15:10:08,210] [Preprocessor.java:241] [main] Processing chromosome scaffold41466 Processing chromosome scaffold41466 INFO [2014-07-02 15:10:08,218] [Preprocessor.java:241] [main] Processing chromosome scaffold41470 Processing chromosome scaffold41470 INFO [2014-07-02 15:10:08,228] [Preprocessor.java:241] [main] Processing chromosome scaffold41472 Processing chromosome scaffold41472 INFO [2014-07-02 15:10:08,268] [Preprocessor.java:241] [main] Processing chromosome scaffold41480 Processing chromosome scaffold41480 INFO [2014-07-02 15:10:08,315] [Preprocessor.java:241] [main] Processing chromosome scaffold415 Processing chromosome scaffold415 INFO [2014-07-02 15:10:08,332] [Preprocessor.java:241] [main] Processing chromosome scaffold41502 Processing chromosome scaffold41502 INFO [2014-07-02 15:10:09,424] [Preprocessor.java:241] [main] Processing chromosome scaffold41522 Processing chromosome scaffold41522 INFO [2014-07-02 15:10:14,393] [Preprocessor.java:241] [main] Processing chromosome scaffold41530 Processing chromosome scaffold41530 INFO [2014-07-02 15:10:14,452] [Preprocessor.java:241] [main] Processing chromosome scaffold41534 Processing chromosome scaffold41534 INFO [2014-07-02 15:10:14,492] [Preprocessor.java:241] [main] Processing chromosome scaffold41540 Processing chromosome scaffold41540 INFO [2014-07-02 15:10:14,534] [Preprocessor.java:241] [main] Processing chromosome scaffold41546 Processing chromosome scaffold41546 INFO [2014-07-02 15:10:14,571] [Preprocessor.java:241] [main] Processing chromosome scaffold41550 Processing chromosome scaffold41550 INFO [2014-07-02 15:10:14,603] [Preprocessor.java:241] [main] Processing chromosome scaffold41560 Processing chromosome scaffold41560 INFO [2014-07-02 15:10:14,627] [Preprocessor.java:241] [main] Processing chromosome scaffold41568 Processing chromosome scaffold41568 INFO [2014-07-02 15:10:14,685] [Preprocessor.java:241] [main] Processing chromosome scaffold41572 Processing chromosome scaffold41572 INFO [2014-07-02 15:10:14,733] [Preprocessor.java:241] [main] Processing chromosome scaffold41588 Processing chromosome scaffold41588 INFO [2014-07-02 15:10:14,820] [Preprocessor.java:241] [main] Processing chromosome scaffold41594 Processing chromosome scaffold41594 INFO [2014-07-02 15:10:14,841] [Preprocessor.java:241] [main] Processing chromosome scaffold41598 Processing chromosome scaffold41598 INFO [2014-07-02 15:10:14,911] [Preprocessor.java:241] [main] Processing chromosome scaffold416 Processing chromosome scaffold416 INFO [2014-07-02 15:10:14,965] [Preprocessor.java:241] [main] Processing chromosome scaffold41604 Processing chromosome scaffold41604 INFO [2014-07-02 15:10:14,989] [Preprocessor.java:241] [main] Processing chromosome scaffold41616 Processing chromosome scaffold41616 INFO [2014-07-02 15:10:15,034] [Preprocessor.java:241] [main] Processing chromosome scaffold41628 Processing chromosome scaffold41628 INFO [2014-07-02 15:10:15,062] [Preprocessor.java:241] [main] Processing chromosome scaffold41636 Processing chromosome scaffold41636 INFO [2014-07-02 15:10:15,075] [Preprocessor.java:241] [main] Processing chromosome scaffold41648 Processing chromosome scaffold41648 INFO [2014-07-02 15:10:15,086] [Preprocessor.java:241] [main] Processing chromosome scaffold41650 Processing chromosome scaffold41650 INFO [2014-07-02 15:10:15,152] [Preprocessor.java:241] [main] Processing chromosome scaffold41652 Processing chromosome scaffold41652 INFO [2014-07-02 15:10:15,231] [Preprocessor.java:241] [main] Processing chromosome scaffold41656 Processing chromosome scaffold41656 INFO [2014-07-02 15:10:16,184] [Preprocessor.java:241] [main] Processing chromosome scaffold41660 Processing chromosome scaffold41660 INFO [2014-07-02 15:10:16,221] [Preprocessor.java:241] [main] Processing chromosome scaffold41664 Processing chromosome scaffold41664 INFO [2014-07-02 15:10:16,243] [Preprocessor.java:241] [main] Processing chromosome scaffold41666 Processing chromosome scaffold41666 INFO [2014-07-02 15:10:16,291] [Preprocessor.java:241] [main] Processing chromosome scaffold41684 Processing chromosome scaffold41684 INFO [2014-07-02 15:10:16,322] [Preprocessor.java:241] [main] Processing chromosome scaffold417 Processing chromosome scaffold417 INFO [2014-07-02 15:10:16,339] [Preprocessor.java:241] [main] Processing chromosome scaffold41700 Processing chromosome scaffold41700 INFO [2014-07-02 15:10:16,354] [Preprocessor.java:241] [main] Processing chromosome scaffold41722 Processing chromosome scaffold41722 INFO [2014-07-02 15:10:16,400] [Preprocessor.java:241] [main] Processing chromosome scaffold41730 Processing chromosome scaffold41730 INFO [2014-07-02 15:10:16,454] [Preprocessor.java:241] [main] Processing chromosome scaffold41732 Processing chromosome scaffold41732 INFO [2014-07-02 15:10:16,543] [Preprocessor.java:241] [main] Processing chromosome scaffold41740 Processing chromosome scaffold41740 INFO [2014-07-02 15:10:16,585] [Preprocessor.java:241] [main] Processing chromosome scaffold41744 Processing chromosome scaffold41744 INFO [2014-07-02 15:10:16,608] [Preprocessor.java:241] [main] Processing chromosome scaffold41754 Processing chromosome scaffold41754 INFO [2014-07-02 15:10:16,624] [Preprocessor.java:241] [main] Processing chromosome scaffold41762 Processing chromosome scaffold41762 INFO [2014-07-02 15:10:16,638] [Preprocessor.java:241] [main] Processing chromosome scaffold41766 Processing chromosome scaffold41766 INFO [2014-07-02 15:10:16,657] [Preprocessor.java:241] [main] Processing chromosome scaffold41772 Processing chromosome scaffold41772 INFO [2014-07-02 15:10:16,692] [Preprocessor.java:241] [main] Processing chromosome scaffold41776 Processing chromosome scaffold41776 INFO [2014-07-02 15:10:16,708] [Preprocessor.java:241] [main] Processing chromosome scaffold41786 Processing chromosome scaffold41786 INFO [2014-07-02 15:10:16,729] [Preprocessor.java:241] [main] Processing chromosome scaffold41792 Processing chromosome scaffold41792 INFO [2014-07-02 15:10:16,755] [Preprocessor.java:241] [main] Processing chromosome scaffold41794 Processing chromosome scaffold41794 INFO [2014-07-02 15:10:16,769] [Preprocessor.java:241] [main] Processing chromosome scaffold41798 Processing chromosome scaffold41798 INFO [2014-07-02 15:10:16,789] [Preprocessor.java:241] [main] Processing chromosome scaffold418 Processing chromosome scaffold418 INFO [2014-07-02 15:10:16,850] [Preprocessor.java:241] [main] Processing chromosome scaffold41806 Processing chromosome scaffold41806 INFO [2014-07-02 15:10:16,895] [Preprocessor.java:241] [main] Processing chromosome scaffold41812 Processing chromosome scaffold41812 INFO [2014-07-02 15:10:16,953] [Preprocessor.java:241] [main] Processing chromosome scaffold41816 Processing chromosome scaffold41816 INFO [2014-07-02 15:10:17,004] [Preprocessor.java:241] [main] Processing chromosome scaffold41824 Processing chromosome scaffold41824 INFO [2014-07-02 15:10:17,047] [Preprocessor.java:241] [main] Processing chromosome scaffold41828 Processing chromosome scaffold41828 INFO [2014-07-02 15:10:17,156] [Preprocessor.java:241] [main] Processing chromosome scaffold41832 Processing chromosome scaffold41832 INFO [2014-07-02 15:10:17,227] [Preprocessor.java:241] [main] Processing chromosome scaffold41834 Processing chromosome scaffold41834 INFO [2014-07-02 15:10:17,262] [Preprocessor.java:241] [main] Processing chromosome scaffold41852 Processing chromosome scaffold41852 .INFO [2014-07-02 15:10:17,296] [Preprocessor.java:241] [main] Processing chromosome scaffold41858 Processing chromosome scaffold41858 INFO [2014-07-02 15:10:17,364] [Preprocessor.java:241] [main] Processing chromosome scaffold41876 Processing chromosome scaffold41876 INFO [2014-07-02 15:10:17,415] [Preprocessor.java:241] [main] Processing chromosome scaffold41882 Processing chromosome scaffold41882 INFO [2014-07-02 15:10:17,430] [Preprocessor.java:241] [main] Processing chromosome scaffold41884 Processing chromosome scaffold41884 INFO [2014-07-02 15:10:17,465] [Preprocessor.java:241] [main] Processing chromosome scaffold41890 Processing chromosome scaffold41890 INFO [2014-07-02 15:10:17,499] [Preprocessor.java:241] [main] Processing chromosome scaffold41896 Processing chromosome scaffold41896 INFO [2014-07-02 15:10:17,573] [Preprocessor.java:241] [main] Processing chromosome scaffold41898 Processing chromosome scaffold41898 INFO [2014-07-02 15:10:17,595] [Preprocessor.java:241] [main] Processing chromosome scaffold419 Processing chromosome scaffold419 INFO [2014-07-02 15:10:25,112] [Preprocessor.java:241] [main] Processing chromosome scaffold41900 Processing chromosome scaffold41900 INFO [2014-07-02 15:10:25,132] [Preprocessor.java:241] [main] Processing chromosome scaffold41902 Processing chromosome scaffold41902 INFO [2014-07-02 15:10:25,168] [Preprocessor.java:241] [main] Processing chromosome scaffold41928 Processing chromosome scaffold41928 INFO [2014-07-02 15:10:25,177] [Preprocessor.java:241] [main] Processing chromosome scaffold41948 Processing chromosome scaffold41948 INFO [2014-07-02 15:10:25,210] [Preprocessor.java:241] [main] Processing chromosome scaffold41954 Processing chromosome scaffold41954 INFO [2014-07-02 15:10:25,250] [Preprocessor.java:241] [main] Processing chromosome scaffold41968 Processing chromosome scaffold41968 INFO [2014-07-02 15:10:25,345] [Preprocessor.java:241] [main] Processing chromosome scaffold41970 Processing chromosome scaffold41970 INFO [2014-07-02 15:10:25,397] [Preprocessor.java:241] [main] Processing chromosome scaffold41972 Processing chromosome scaffold41972 INFO [2014-07-02 15:10:25,428] [Preprocessor.java:241] [main] Processing chromosome scaffold41974 Processing chromosome scaffold41974 INFO [2014-07-02 15:10:25,487] [Preprocessor.java:241] [main] Processing chromosome scaffold41982 Processing chromosome scaffold41982 INFO [2014-07-02 15:10:25,536] [Preprocessor.java:241] [main] Processing chromosome scaffold41988 Processing chromosome scaffold41988 INFO [2014-07-02 15:10:25,583] [Preprocessor.java:241] [main] Processing chromosome scaffold41994 Processing chromosome scaffold41994 INFO [2014-07-02 15:10:25,713] [Preprocessor.java:241] [main] Processing chromosome scaffold41998 Processing chromosome scaffold41998 INFO [2014-07-02 15:10:25,777] [Preprocessor.java:241] [main] Processing chromosome scaffold42 Processing chromosome scaffold42 INFO [2014-07-02 15:10:25,886] [Preprocessor.java:241] [main] Processing chromosome scaffold420 Processing chromosome scaffold420 INFO [2014-07-02 15:10:25,890] [Preprocessor.java:241] [main] Processing chromosome scaffold42022 Processing chromosome scaffold42022 INFO [2014-07-02 15:10:25,907] [Preprocessor.java:241] [main] Processing chromosome scaffold42030 Processing chromosome scaffold42030 INFO [2014-07-02 15:10:25,952] [Preprocessor.java:241] [main] Processing chromosome scaffold42032 Processing chromosome scaffold42032 INFO [2014-07-02 15:10:25,989] [Preprocessor.java:241] [main] Processing chromosome scaffold42040 Processing chromosome scaffold42040 INFO [2014-07-02 15:10:26,067] [Preprocessor.java:241] [main] Processing chromosome scaffold42046 Processing chromosome scaffold42046 INFO [2014-07-02 15:10:31,231] [Preprocessor.java:241] [main] Processing chromosome scaffold42048 Processing chromosome scaffold42048 INFO [2014-07-02 15:10:31,277] [Preprocessor.java:241] [main] Processing chromosome scaffold42060 Processing chromosome scaffold42060 INFO [2014-07-02 15:10:31,315] [Preprocessor.java:241] [main] Processing chromosome scaffold42062 Processing chromosome scaffold42062 INFO [2014-07-02 15:10:31,357] [Preprocessor.java:241] [main] Processing chromosome scaffold42070 Processing chromosome scaffold42070 INFO [2014-07-02 15:10:31,402] [Preprocessor.java:241] [main] Processing chromosome scaffold42076 Processing chromosome scaffold42076 INFO [2014-07-02 15:10:31,424] [Preprocessor.java:241] [main] Processing chromosome scaffold42086 Processing chromosome scaffold42086 INFO [2014-07-02 15:10:31,447] [Preprocessor.java:241] [main] Processing chromosome scaffold42090 Processing chromosome scaffold42090 INFO [2014-07-02 15:10:31,512] [Preprocessor.java:241] [main] Processing chromosome scaffold42096 Processing chromosome scaffold42096 INFO [2014-07-02 15:10:31,551] [Preprocessor.java:241] [main] Processing chromosome scaffold421 Processing chromosome scaffold421 INFO [2014-07-02 15:10:31,619] [Preprocessor.java:241] [main] Processing chromosome scaffold42112 Processing chromosome scaffold42112 INFO [2014-07-02 15:10:31,679] [Preprocessor.java:241] [main] Processing chromosome scaffold42124 Processing chromosome scaffold42124 INFO [2014-07-02 15:10:31,786] [Preprocessor.java:241] [main] Processing chromosome scaffold42128 Processing chromosome scaffold42128 INFO [2014-07-02 15:10:31,858] [Preprocessor.java:241] [main] Processing chromosome scaffold42130 Processing chromosome scaffold42130 INFO [2014-07-02 15:10:33,463] [Preprocessor.java:241] [main] Processing chromosome scaffold42144 Processing chromosome scaffold42144 INFO [2014-07-02 15:10:33,517] [Preprocessor.java:241] [main] Processing chromosome scaffold42158 Processing chromosome scaffold42158 INFO [2014-07-02 15:10:33,564] [Preprocessor.java:241] [main] Processing chromosome scaffold42164 Processing chromosome scaffold42164 INFO [2014-07-02 15:10:33,622] [Preprocessor.java:241] [main] Processing chromosome scaffold42166 Processing chromosome scaffold42166 INFO [2014-07-02 15:10:33,666] [Preprocessor.java:241] [main] Processing chromosome scaffold42172 Processing chromosome scaffold42172 INFO [2014-07-02 15:10:33,696] [Preprocessor.java:241] [main] Processing chromosome scaffold42184 Processing chromosome scaffold42184 INFO [2014-07-02 15:10:33,744] [Preprocessor.java:241] [main] Processing chromosome scaffold42190 Processing chromosome scaffold42190 INFO [2014-07-02 15:10:33,794] [Preprocessor.java:241] [main] Processing chromosome scaffold42198 Processing chromosome scaffold42198 INFO [2014-07-02 15:10:33,844] [Preprocessor.java:241] [main] Processing chromosome scaffold422 Processing chromosome scaffold422 INFO [2014-07-02 15:10:33,901] [Preprocessor.java:241] [main] Processing chromosome scaffold42208 Processing chromosome scaffold42208 INFO [2014-07-02 15:10:33,930] [Preprocessor.java:241] [main] Processing chromosome scaffold42210 Processing chromosome scaffold42210 INFO [2014-07-02 15:10:33,948] [Preprocessor.java:241] [main] Processing chromosome scaffold42214 Processing chromosome scaffold42214 INFO [2014-07-02 15:10:36,689] [Preprocessor.java:241] [main] Processing chromosome scaffold42226 Processing chromosome scaffold42226 INFO [2014-07-02 15:10:36,737] [Preprocessor.java:241] [main] Processing chromosome scaffold42236 Processing chromosome scaffold42236 INFO [2014-07-02 15:10:36,791] [Preprocessor.java:241] [main] Processing chromosome scaffold42246 Processing chromosome scaffold42246 INFO [2014-07-02 15:10:36,828] [Preprocessor.java:241] [main] Processing chromosome scaffold42252 Processing chromosome scaffold42252 INFO [2014-07-02 15:10:36,866] [Preprocessor.java:241] [main] Processing chromosome scaffold42262 Processing chromosome scaffold42262 INFO [2014-07-02 15:10:36,939] [Preprocessor.java:241] [main] Processing chromosome scaffold42264 Processing chromosome scaffold42264 INFO [2014-07-02 15:10:36,964] [Preprocessor.java:241] [main] Processing chromosome scaffold42268 Processing chromosome scaffold42268 INFO [2014-07-02 15:10:37,012] [Preprocessor.java:241] [main] Processing chromosome scaffold42272 Processing chromosome scaffold42272 INFO [2014-07-02 15:10:37,059] [Preprocessor.java:241] [main] Processing chromosome scaffold42274 Processing chromosome scaffold42274 INFO [2014-07-02 15:10:37,082] [Preprocessor.java:241] [main] Processing chromosome scaffold423 Processing chromosome scaffold423 INFO [2014-07-02 15:10:37,094] [Preprocessor.java:241] [main] Processing chromosome scaffold42302 Processing chromosome scaffold42302 INFO [2014-07-02 15:10:37,157] [Preprocessor.java:241] [main] Processing chromosome scaffold42306 Processing chromosome scaffold42306 INFO [2014-07-02 15:10:37,189] [Preprocessor.java:241] [main] Processing chromosome scaffold42326 Processing chromosome scaffold42326 INFO [2014-07-02 15:10:37,206] [Preprocessor.java:241] [main] Processing chromosome scaffold42328 Processing chromosome scaffold42328 INFO [2014-07-02 15:10:37,273] [Preprocessor.java:241] [main] Processing chromosome scaffold42348 Processing chromosome scaffold42348 INFO [2014-07-02 15:10:37,317] [Preprocessor.java:241] [main] Processing chromosome scaffold42364 Processing chromosome scaffold42364 INFO [2014-07-02 15:10:37,374] [Preprocessor.java:241] [main] Processing chromosome scaffold42366 Processing chromosome scaffold42366 INFO [2014-07-02 15:10:37,433] [Preprocessor.java:241] [main] Processing chromosome scaffold42372 Processing chromosome scaffold42372 INFO [2014-07-02 15:10:37,457] [Preprocessor.java:241] [main] Processing chromosome scaffold42380 Processing chromosome scaffold42380 .INFO [2014-07-02 15:10:37,487] [Preprocessor.java:241] [main] Processing chromosome scaffold42390 Processing chromosome scaffold42390 INFO [2014-07-02 15:10:37,530] [Preprocessor.java:241] [main] Processing chromosome scaffold42392 Processing chromosome scaffold42392 INFO [2014-07-02 15:10:37,560] [Preprocessor.java:241] [main] Processing chromosome scaffold424 Processing chromosome scaffold424 INFO [2014-07-02 15:10:37,612] [Preprocessor.java:241] [main] Processing chromosome scaffold42402 Processing chromosome scaffold42402 INFO [2014-07-02 15:10:38,892] [Preprocessor.java:241] [main] Processing chromosome scaffold42408 Processing chromosome scaffold42408 INFO [2014-07-02 15:10:38,932] [Preprocessor.java:241] [main] Processing chromosome scaffold42422 Processing chromosome scaffold42422 INFO [2014-07-02 15:10:39,022] [Preprocessor.java:241] [main] Processing chromosome scaffold42440 Processing chromosome scaffold42440 INFO [2014-07-02 15:10:39,050] [Preprocessor.java:241] [main] Processing chromosome scaffold42446 Processing chromosome scaffold42446 INFO [2014-07-02 15:10:42,121] [Preprocessor.java:241] [main] Processing chromosome scaffold42448 Processing chromosome scaffold42448 INFO [2014-07-02 15:10:42,172] [Preprocessor.java:241] [main] Processing chromosome scaffold42450 Processing chromosome scaffold42450 INFO [2014-07-02 15:10:42,208] [Preprocessor.java:241] [main] Processing chromosome scaffold42466 Processing chromosome scaffold42466 INFO [2014-07-02 15:10:42,293] [Preprocessor.java:241] [main] Processing chromosome scaffold42486 Processing chromosome scaffold42486 INFO [2014-07-02 15:10:43,145] [Preprocessor.java:241] [main] Processing chromosome scaffold42490 Processing chromosome scaffold42490 INFO [2014-07-02 15:10:43,188] [Preprocessor.java:241] [main] Processing chromosome scaffold425 Processing chromosome scaffold425 INFO [2014-07-02 15:10:43,309] [Preprocessor.java:241] [main] Processing chromosome scaffold42508 Processing chromosome scaffold42508 INFO [2014-07-02 15:10:43,359] [Preprocessor.java:241] [main] Processing chromosome scaffold42516 Processing chromosome scaffold42516 INFO [2014-07-02 15:10:43,424] [Preprocessor.java:241] [main] Processing chromosome scaffold42518 Processing chromosome scaffold42518 INFO [2014-07-02 15:10:43,525] [Preprocessor.java:241] [main] Processing chromosome scaffold42524 Processing chromosome scaffold42524 INFO [2014-07-02 15:10:43,572] [Preprocessor.java:241] [main] Processing chromosome scaffold42528 Processing chromosome scaffold42528 INFO [2014-07-02 15:10:43,634] [Preprocessor.java:241] [main] Processing chromosome scaffold42530 Processing chromosome scaffold42530 INFO [2014-07-02 15:10:49,803] [Preprocessor.java:241] [main] Processing chromosome scaffold42540 Processing chromosome scaffold42540 INFO [2014-07-02 15:10:49,888] [Preprocessor.java:241] [main] Processing chromosome scaffold42556 Processing chromosome scaffold42556 INFO [2014-07-02 15:10:49,939] [Preprocessor.java:241] [main] Processing chromosome scaffold42558 Processing chromosome scaffold42558 INFO [2014-07-02 15:10:51,693] [Preprocessor.java:241] [main] Processing chromosome scaffold42566 Processing chromosome scaffold42566 INFO [2014-07-02 15:10:51,714] [Preprocessor.java:241] [main] Processing chromosome scaffold42568 Processing chromosome scaffold42568 INFO [2014-07-02 15:10:51,778] [Preprocessor.java:241] [main] Processing chromosome scaffold42570 Processing chromosome scaffold42570 INFO [2014-07-02 15:10:51,819] [Preprocessor.java:241] [main] Processing chromosome scaffold42584 Processing chromosome scaffold42584 INFO [2014-07-02 15:10:51,857] [Preprocessor.java:241] [main] Processing chromosome scaffold42592 Processing chromosome scaffold42592 INFO [2014-07-02 15:10:51,898] [Preprocessor.java:241] [main] Processing chromosome scaffold42596 Processing chromosome scaffold42596 INFO [2014-07-02 15:10:51,956] [Preprocessor.java:241] [main] Processing chromosome scaffold42598 Processing chromosome scaffold42598 INFO [2014-07-02 15:10:51,989] [Preprocessor.java:241] [main] Processing chromosome scaffold426 Processing chromosome scaffold426 INFO [2014-07-02 15:10:52,016] [Preprocessor.java:241] [main] Processing chromosome scaffold42604 Processing chromosome scaffold42604 INFO [2014-07-02 15:10:52,042] [Preprocessor.java:241] [main] Processing chromosome scaffold42618 Processing chromosome scaffold42618 INFO [2014-07-02 15:10:52,069] [Preprocessor.java:241] [main] Processing chromosome scaffold42634 Processing chromosome scaffold42634 INFO [2014-07-02 15:10:52,113] [Preprocessor.java:241] [main] Processing chromosome scaffold42640 Processing chromosome scaffold42640 INFO [2014-07-02 15:10:52,135] [Preprocessor.java:241] [main] Processing chromosome scaffold42648 Processing chromosome scaffold42648 INFO [2014-07-02 15:10:52,173] [Preprocessor.java:241] [main] Processing chromosome scaffold42656 Processing chromosome scaffold42656 INFO [2014-07-02 15:10:52,201] [Preprocessor.java:241] [main] Processing chromosome scaffold42662 Processing chromosome scaffold42662 INFO [2014-07-02 15:10:52,269] [Preprocessor.java:241] [main] Processing chromosome scaffold42674 Processing chromosome scaffold42674 INFO [2014-07-02 15:10:52,310] [Preprocessor.java:241] [main] Processing chromosome scaffold42684 Processing chromosome scaffold42684 INFO [2014-07-02 15:10:52,421] [Preprocessor.java:241] [main] Processing chromosome scaffold427 Processing chromosome scaffold427 INFO [2014-07-02 15:10:52,474] [Preprocessor.java:241] [main] Processing chromosome scaffold42704 Processing chromosome scaffold42704 INFO [2014-07-02 15:10:52,489] [Preprocessor.java:241] [main] Processing chromosome scaffold42726 Processing chromosome scaffold42726 INFO [2014-07-02 15:10:52,545] [Preprocessor.java:241] [main] Processing chromosome scaffold42740 Processing chromosome scaffold42740 INFO [2014-07-02 15:10:52,593] [Preprocessor.java:241] [main] Processing chromosome scaffold42754 Processing chromosome scaffold42754 INFO [2014-07-02 15:10:52,654] [Preprocessor.java:241] [main] Processing chromosome scaffold42760 Processing chromosome scaffold42760 INFO [2014-07-02 15:10:52,699] [Preprocessor.java:241] [main] Processing chromosome scaffold42762 Processing chromosome scaffold42762 INFO [2014-07-02 15:10:52,715] [Preprocessor.java:241] [main] Processing chromosome scaffold42766 Processing chromosome scaffold42766 INFO [2014-07-02 15:10:52,774] [Preprocessor.java:241] [main] Processing chromosome scaffold42770 Processing chromosome scaffold42770 INFO [2014-07-02 15:10:52,835] [Preprocessor.java:241] [main] Processing chromosome scaffold42776 Processing chromosome scaffold42776 INFO [2014-07-02 15:10:52,903] [Preprocessor.java:241] [main] Processing chromosome scaffold42784 Processing chromosome scaffold42784 INFO [2014-07-02 15:10:52,979] [Preprocessor.java:241] [main] Processing chromosome scaffold42788 Processing chromosome scaffold42788 INFO [2014-07-02 15:10:53,036] [Preprocessor.java:241] [main] Processing chromosome scaffold42790 Processing chromosome scaffold42790 INFO [2014-07-02 15:10:57,109] [Preprocessor.java:241] [main] Processing chromosome scaffold42794 Processing chromosome scaffold42794 INFO [2014-07-02 15:10:57,168] [Preprocessor.java:241] [main] Processing chromosome scaffold42804 Processing chromosome scaffold42804 INFO [2014-07-02 15:10:57,181] [Preprocessor.java:241] [main] Processing chromosome scaffold42836 Processing chromosome scaffold42836 INFO [2014-07-02 15:10:57,296] [Preprocessor.java:241] [main] Processing chromosome scaffold42840 Processing chromosome scaffold42840 INFO [2014-07-02 15:10:57,353] [Preprocessor.java:241] [main] Processing chromosome scaffold42850 Processing chromosome scaffold42850 INFO [2014-07-02 15:10:57,479] [Preprocessor.java:241] [main] Processing chromosome scaffold42866 Processing chromosome scaffold42866 INFO [2014-07-02 15:10:57,528] [Preprocessor.java:241] [main] Processing chromosome scaffold42880 Processing chromosome scaffold42880 INFO [2014-07-02 15:10:57,545] [Preprocessor.java:241] [main] Processing chromosome scaffold42890 Processing chromosome scaffold42890 INFO [2014-07-02 15:10:57,584] [Preprocessor.java:241] [main] Processing chromosome scaffold42892 Processing chromosome scaffold42892 INFO [2014-07-02 15:10:57,630] [Preprocessor.java:241] [main] Processing chromosome scaffold42894 Processing chromosome scaffold42894 INFO [2014-07-02 15:10:57,682] [Preprocessor.java:241] [main] Processing chromosome scaffold42896 Processing chromosome scaffold42896 INFO [2014-07-02 15:10:57,698] [Preprocessor.java:241] [main] Processing chromosome scaffold429 Processing chromosome scaffold429 INFO [2014-07-02 15:10:57,710] [Preprocessor.java:241] [main] Processing chromosome scaffold42904 Processing chromosome scaffold42904 INFO [2014-07-02 15:10:57,789] [Preprocessor.java:241] [main] Processing chromosome scaffold42918 Processing chromosome scaffold42918 INFO [2014-07-02 15:10:57,837] [Preprocessor.java:241] [main] Processing chromosome scaffold42922 Processing chromosome scaffold42922 .INFO [2014-07-02 15:10:57,901] [Preprocessor.java:241] [main] Processing chromosome scaffold42924 Processing chromosome scaffold42924 INFO [2014-07-02 15:10:57,929] [Preprocessor.java:241] [main] Processing chromosome scaffold42930 Processing chromosome scaffold42930 INFO [2014-07-02 15:10:57,962] [Preprocessor.java:241] [main] Processing chromosome scaffold42946 Processing chromosome scaffold42946 INFO [2014-07-02 15:10:58,001] [Preprocessor.java:241] [main] Processing chromosome scaffold42948 Processing chromosome scaffold42948 INFO [2014-07-02 15:10:58,071] [Preprocessor.java:241] [main] Processing chromosome scaffold42960 Processing chromosome scaffold42960 INFO [2014-07-02 15:10:58,107] [Preprocessor.java:241] [main] Processing chromosome scaffold42974 Processing chromosome scaffold42974 INFO [2014-07-02 15:10:58,167] [Preprocessor.java:241] [main] Processing chromosome scaffold42990 Processing chromosome scaffold42990 INFO [2014-07-02 15:11:02,583] [Preprocessor.java:241] [main] Processing chromosome scaffold42994 Processing chromosome scaffold42994 INFO [2014-07-02 15:11:02,644] [Preprocessor.java:241] [main] Processing chromosome scaffold43 Processing chromosome scaffold43 INFO [2014-07-02 15:11:02,759] [Preprocessor.java:241] [main] Processing chromosome scaffold430 Processing chromosome scaffold430 INFO [2014-07-02 15:11:02,772] [Preprocessor.java:241] [main] Processing chromosome scaffold43008 Processing chromosome scaffold43008 INFO [2014-07-02 15:11:02,804] [Preprocessor.java:241] [main] Processing chromosome scaffold43012 Processing chromosome scaffold43012 INFO [2014-07-02 15:11:02,838] [Preprocessor.java:241] [main] Processing chromosome scaffold43024 Processing chromosome scaffold43024 INFO [2014-07-02 15:11:02,898] [Preprocessor.java:241] [main] Processing chromosome scaffold43026 Processing chromosome scaffold43026 INFO [2014-07-02 15:11:02,915] [Preprocessor.java:241] [main] Processing chromosome scaffold43028 Processing chromosome scaffold43028 INFO [2014-07-02 15:11:03,011] [Preprocessor.java:241] [main] Processing chromosome scaffold43034 Processing chromosome scaffold43034 INFO [2014-07-02 15:11:03,112] [Preprocessor.java:241] [main] Processing chromosome scaffold43036 Processing chromosome scaffold43036 INFO [2014-07-02 15:11:03,154] [Preprocessor.java:241] [main] Processing chromosome scaffold43038 Processing chromosome scaffold43038 INFO [2014-07-02 15:11:03,226] [Preprocessor.java:241] [main] Processing chromosome scaffold43054 Processing chromosome scaffold43054 INFO [2014-07-02 15:11:03,263] [Preprocessor.java:241] [main] Processing chromosome scaffold43064 Processing chromosome scaffold43064 INFO [2014-07-02 15:11:03,290] [Preprocessor.java:241] [main] Processing chromosome scaffold43066 Processing chromosome scaffold43066 INFO [2014-07-02 15:11:03,328] [Preprocessor.java:241] [main] Processing chromosome scaffold43072 Processing chromosome scaffold43072 INFO [2014-07-02 15:11:03,421] [Preprocessor.java:241] [main] Processing chromosome scaffold43074 Processing chromosome scaffold43074 INFO [2014-07-02 15:11:03,458] [Preprocessor.java:241] [main] Processing chromosome scaffold43076 Processing chromosome scaffold43076 INFO [2014-07-02 15:11:03,505] [Preprocessor.java:241] [main] Processing chromosome scaffold43084 Processing chromosome scaffold43084 INFO [2014-07-02 15:11:03,614] [Preprocessor.java:241] [main] Processing chromosome scaffold431 Processing chromosome scaffold431 INFO [2014-07-02 15:11:03,630] [Preprocessor.java:241] [main] Processing chromosome scaffold43108 Processing chromosome scaffold43108 INFO [2014-07-02 15:11:03,673] [Preprocessor.java:241] [main] Processing chromosome scaffold43116 Processing chromosome scaffold43116 INFO [2014-07-02 15:11:03,789] [Preprocessor.java:241] [main] Processing chromosome scaffold43122 Processing chromosome scaffold43122 INFO [2014-07-02 15:11:06,991] [Preprocessor.java:241] [main] Processing chromosome scaffold43130 Processing chromosome scaffold43130 INFO [2014-07-02 15:11:07,096] [Preprocessor.java:241] [main] Processing chromosome scaffold43134 Processing chromosome scaffold43134 INFO [2014-07-02 15:11:08,077] [Preprocessor.java:241] [main] Processing chromosome scaffold43136 Processing chromosome scaffold43136 INFO [2014-07-02 15:11:08,103] [Preprocessor.java:241] [main] Processing chromosome scaffold43146 Processing chromosome scaffold43146 INFO [2014-07-02 15:11:08,140] [Preprocessor.java:241] [main] Processing chromosome scaffold43150 Processing chromosome scaffold43150 INFO [2014-07-02 15:11:08,202] [Preprocessor.java:241] [main] Processing chromosome scaffold43170 Processing chromosome scaffold43170 INFO [2014-07-02 15:11:08,272] [Preprocessor.java:241] [main] Processing chromosome scaffold43182 Processing chromosome scaffold43182 INFO [2014-07-02 15:11:08,321] [Preprocessor.java:241] [main] Processing chromosome scaffold43184 Processing chromosome scaffold43184 INFO [2014-07-02 15:11:08,369] [Preprocessor.java:241] [main] Processing chromosome scaffold43194 Processing chromosome scaffold43194 INFO [2014-07-02 15:11:08,439] [Preprocessor.java:241] [main] Processing chromosome scaffold432 Processing chromosome scaffold432 INFO [2014-07-02 15:11:08,643] [Preprocessor.java:241] [main] Processing chromosome scaffold43200 Processing chromosome scaffold43200 INFO [2014-07-02 15:11:08,660] [Preprocessor.java:241] [main] Processing chromosome scaffold43206 Processing chromosome scaffold43206 INFO [2014-07-02 15:11:08,735] [Preprocessor.java:241] [main] Processing chromosome scaffold43208 Processing chromosome scaffold43208 INFO [2014-07-02 15:11:08,804] [Preprocessor.java:241] [main] Processing chromosome scaffold43210 Processing chromosome scaffold43210 INFO [2014-07-02 15:11:08,837] [Preprocessor.java:241] [main] Processing chromosome scaffold43240 Processing chromosome scaffold43240 INFO [2014-07-02 15:11:09,974] [Preprocessor.java:241] [main] Processing chromosome scaffold43242 Processing chromosome scaffold43242 INFO [2014-07-02 15:11:10,008] [Preprocessor.java:241] [main] Processing chromosome scaffold43244 Processing chromosome scaffold43244 INFO [2014-07-02 15:11:10,052] [Preprocessor.java:241] [main] Processing chromosome scaffold43258 Processing chromosome scaffold43258 INFO [2014-07-02 15:11:10,114] [Preprocessor.java:241] [main] Processing chromosome scaffold43272 Processing chromosome scaffold43272 INFO [2014-07-02 15:11:10,144] [Preprocessor.java:241] [main] Processing chromosome scaffold43278 Processing chromosome scaffold43278 INFO [2014-07-02 15:11:10,210] [Preprocessor.java:241] [main] Processing chromosome scaffold43280 Processing chromosome scaffold43280 INFO [2014-07-02 15:11:10,246] [Preprocessor.java:241] [main] Processing chromosome scaffold43290 Processing chromosome scaffold43290 INFO [2014-07-02 15:11:10,314] [Preprocessor.java:241] [main] Processing chromosome scaffold43296 Processing chromosome scaffold43296 INFO [2014-07-02 15:11:10,361] [Preprocessor.java:241] [main] Processing chromosome scaffold433 Processing chromosome scaffold433 .INFO [2014-07-02 15:11:10,869] [Preprocessor.java:241] [main] Processing chromosome scaffold43302 Processing chromosome scaffold43302 INFO [2014-07-02 15:11:10,925] [Preprocessor.java:241] [main] Processing chromosome scaffold43314 Processing chromosome scaffold43314 INFO [2014-07-02 15:11:10,966] [Preprocessor.java:241] [main] Processing chromosome scaffold43340 Processing chromosome scaffold43340 INFO [2014-07-02 15:11:11,054] [Preprocessor.java:241] [main] Processing chromosome scaffold43344 Processing chromosome scaffold43344 INFO [2014-07-02 15:11:11,129] [Preprocessor.java:241] [main] Processing chromosome scaffold43358 Processing chromosome scaffold43358 INFO [2014-07-02 15:11:15,299] [Preprocessor.java:241] [main] Processing chromosome scaffold43364 Processing chromosome scaffold43364 INFO [2014-07-02 15:11:15,346] [Preprocessor.java:241] [main] Processing chromosome scaffold43366 Processing chromosome scaffold43366 INFO [2014-07-02 15:11:15,411] [Preprocessor.java:241] [main] Processing chromosome scaffold43388 Processing chromosome scaffold43388 INFO [2014-07-02 15:11:15,434] [Preprocessor.java:241] [main] Processing chromosome scaffold43396 Processing chromosome scaffold43396 INFO [2014-07-02 15:11:16,259] [Preprocessor.java:241] [main] Processing chromosome scaffold43406 Processing chromosome scaffold43406 INFO [2014-07-02 15:11:16,299] [Preprocessor.java:241] [main] Processing chromosome scaffold43426 Processing chromosome scaffold43426 INFO [2014-07-02 15:11:16,359] [Preprocessor.java:241] [main] Processing chromosome scaffold43442 Processing chromosome scaffold43442 INFO [2014-07-02 15:11:16,404] [Preprocessor.java:241] [main] Processing chromosome scaffold43446 Processing chromosome scaffold43446 INFO [2014-07-02 15:11:16,455] [Preprocessor.java:241] [main] Processing chromosome scaffold43452 Processing chromosome scaffold43452 INFO [2014-07-02 15:11:16,550] [Preprocessor.java:241] [main] Processing chromosome scaffold43494 Processing chromosome scaffold43494 INFO [2014-07-02 15:11:16,586] [Preprocessor.java:241] [main] Processing chromosome scaffold435 Processing chromosome scaffold435 INFO [2014-07-02 15:11:16,600] [Preprocessor.java:241] [main] Processing chromosome scaffold43500 Processing chromosome scaffold43500 INFO [2014-07-02 15:11:16,657] [Preprocessor.java:241] [main] Processing chromosome scaffold43520 Processing chromosome scaffold43520 INFO [2014-07-02 15:11:18,088] [Preprocessor.java:241] [main] Processing chromosome scaffold43522 Processing chromosome scaffold43522 INFO [2014-07-02 15:11:18,163] [Preprocessor.java:241] [main] Processing chromosome scaffold43526 Processing chromosome scaffold43526 INFO [2014-07-02 15:11:18,222] [Preprocessor.java:241] [main] Processing chromosome scaffold43530 Processing chromosome scaffold43530 INFO [2014-07-02 15:11:18,259] [Preprocessor.java:241] [main] Processing chromosome scaffold43536 Processing chromosome scaffold43536 INFO [2014-07-02 15:11:25,838] [Preprocessor.java:241] [main] Processing chromosome scaffold43538 Processing chromosome scaffold43538 INFO [2014-07-02 15:11:25,887] [Preprocessor.java:241] [main] Processing chromosome scaffold43552 Processing chromosome scaffold43552 INFO [2014-07-02 15:11:25,912] [Preprocessor.java:241] [main] Processing chromosome scaffold43562 Processing chromosome scaffold43562 INFO [2014-07-02 15:11:26,031] [Preprocessor.java:241] [main] Processing chromosome scaffold43574 Processing chromosome scaffold43574 INFO [2014-07-02 15:11:26,138] [Preprocessor.java:241] [main] Processing chromosome scaffold43576 Processing chromosome scaffold43576 INFO [2014-07-02 15:11:26,202] [Preprocessor.java:241] [main] Processing chromosome scaffold43598 Processing chromosome scaffold43598 INFO [2014-07-02 15:11:26,262] [Preprocessor.java:241] [main] Processing chromosome scaffold436 Processing chromosome scaffold436 INFO [2014-07-02 15:11:26,271] [Preprocessor.java:241] [main] Processing chromosome scaffold43608 Processing chromosome scaffold43608 INFO [2014-07-02 15:11:26,324] [Preprocessor.java:241] [main] Processing chromosome scaffold43616 Processing chromosome scaffold43616 INFO [2014-07-02 15:11:26,414] [Preprocessor.java:241] [main] Processing chromosome scaffold43624 Processing chromosome scaffold43624 INFO [2014-07-02 15:11:26,450] [Preprocessor.java:241] [main] Processing chromosome scaffold43630 Processing chromosome scaffold43630 INFO [2014-07-02 15:11:26,504] [Preprocessor.java:241] [main] Processing chromosome scaffold43634 Processing chromosome scaffold43634 INFO [2014-07-02 15:11:26,527] [Preprocessor.java:241] [main] Processing chromosome scaffold43648 Processing chromosome scaffold43648 INFO [2014-07-02 15:11:26,600] [Preprocessor.java:241] [main] Processing chromosome scaffold43660 Processing chromosome scaffold43660 INFO [2014-07-02 15:11:26,644] [Preprocessor.java:241] [main] Processing chromosome scaffold43662 Processing chromosome scaffold43662 INFO [2014-07-02 15:11:26,662] [Preprocessor.java:241] [main] Processing chromosome scaffold43664 Processing chromosome scaffold43664 INFO [2014-07-02 15:11:26,724] [Preprocessor.java:241] [main] Processing chromosome scaffold43676 Processing chromosome scaffold43676 INFO [2014-07-02 15:11:26,774] [Preprocessor.java:241] [main] Processing chromosome scaffold43680 Processing chromosome scaffold43680 INFO [2014-07-02 15:11:27,952] [Preprocessor.java:241] [main] Processing chromosome scaffold43686 Processing chromosome scaffold43686 INFO [2014-07-02 15:11:27,993] [Preprocessor.java:241] [main] Processing chromosome scaffold43692 Processing chromosome scaffold43692 INFO [2014-07-02 15:11:28,076] [Preprocessor.java:241] [main] Processing chromosome scaffold43696 Processing chromosome scaffold43696 INFO [2014-07-02 15:11:28,135] [Preprocessor.java:241] [main] Processing chromosome scaffold43702 Processing chromosome scaffold43702 INFO [2014-07-02 15:11:28,229] [Preprocessor.java:241] [main] Processing chromosome scaffold43708 Processing chromosome scaffold43708 INFO [2014-07-02 15:11:28,310] [Preprocessor.java:241] [main] Processing chromosome scaffold43726 Processing chromosome scaffold43726 INFO [2014-07-02 15:11:28,370] [Preprocessor.java:241] [main] Processing chromosome scaffold43742 Processing chromosome scaffold43742 INFO [2014-07-02 15:11:28,458] [Preprocessor.java:241] [main] Processing chromosome scaffold43764 Processing chromosome scaffold43764 INFO [2014-07-02 15:11:28,523] [Preprocessor.java:241] [main] Processing chromosome scaffold43772 Processing chromosome scaffold43772 INFO [2014-07-02 15:11:28,567] [Preprocessor.java:241] [main] Processing chromosome scaffold43782 Processing chromosome scaffold43782 INFO [2014-07-02 15:11:28,623] [Preprocessor.java:241] [main] Processing chromosome scaffold43786 Processing chromosome scaffold43786 .INFO [2014-07-02 15:11:28,799] [Preprocessor.java:241] [main] Processing chromosome scaffold43794 Processing chromosome scaffold43794 INFO [2014-07-02 15:11:31,714] [Preprocessor.java:241] [main] Processing chromosome scaffold43798 Processing chromosome scaffold43798 INFO [2014-07-02 15:11:31,750] [Preprocessor.java:241] [main] Processing chromosome scaffold43804 Processing chromosome scaffold43804 INFO [2014-07-02 15:11:31,811] [Preprocessor.java:241] [main] Processing chromosome scaffold43818 Processing chromosome scaffold43818 INFO [2014-07-02 15:11:31,891] [Preprocessor.java:241] [main] Processing chromosome scaffold43836 Processing chromosome scaffold43836 INFO [2014-07-02 15:11:31,935] [Preprocessor.java:241] [main] Processing chromosome scaffold43842 Processing chromosome scaffold43842 INFO [2014-07-02 15:11:32,016] [Preprocessor.java:241] [main] Processing chromosome scaffold43844 Processing chromosome scaffold43844 INFO [2014-07-02 15:11:32,062] [Preprocessor.java:241] [main] Processing chromosome scaffold43868 Processing chromosome scaffold43868 INFO [2014-07-02 15:11:32,150] [Preprocessor.java:241] [main] Processing chromosome scaffold43878 Processing chromosome scaffold43878 INFO [2014-07-02 15:11:32,199] [Preprocessor.java:241] [main] Processing chromosome scaffold43894 Processing chromosome scaffold43894 INFO [2014-07-02 15:11:32,253] [Preprocessor.java:241] [main] Processing chromosome scaffold439 Processing chromosome scaffold439 INFO [2014-07-02 15:11:32,272] [Preprocessor.java:241] [main] Processing chromosome scaffold43920 Processing chromosome scaffold43920 INFO [2014-07-02 15:11:32,354] [Preprocessor.java:241] [main] Processing chromosome scaffold43932 Processing chromosome scaffold43932 INFO [2014-07-02 15:11:32,508] [Preprocessor.java:241] [main] Processing chromosome scaffold43940 Processing chromosome scaffold43940 INFO [2014-07-02 15:11:35,535] [Preprocessor.java:241] [main] Processing chromosome scaffold43954 Processing chromosome scaffold43954 INFO [2014-07-02 15:11:35,635] [Preprocessor.java:241] [main] Processing chromosome scaffold43956 Processing chromosome scaffold43956 INFO [2014-07-02 15:11:35,716] [Preprocessor.java:241] [main] Processing chromosome scaffold43964 Processing chromosome scaffold43964 INFO [2014-07-02 15:11:35,835] [Preprocessor.java:241] [main] Processing chromosome scaffold43986 Processing chromosome scaffold43986 INFO [2014-07-02 15:11:35,920] [Preprocessor.java:241] [main] Processing chromosome scaffold43988 Processing chromosome scaffold43988 INFO [2014-07-02 15:11:36,005] [Preprocessor.java:241] [main] Processing chromosome scaffold44 Processing chromosome scaffold44 INFO [2014-07-02 15:11:36,102] [Preprocessor.java:241] [main] Processing chromosome scaffold440 Processing chromosome scaffold440 INFO [2014-07-02 15:11:36,133] [Preprocessor.java:241] [main] Processing chromosome scaffold44006 Processing chromosome scaffold44006 INFO [2014-07-02 15:11:36,215] [Preprocessor.java:241] [main] Processing chromosome scaffold44008 Processing chromosome scaffold44008 INFO [2014-07-02 15:11:36,290] [Preprocessor.java:241] [main] Processing chromosome scaffold44054 Processing chromosome scaffold44054 INFO [2014-07-02 15:11:42,584] [Preprocessor.java:241] [main] Processing chromosome scaffold44064 Processing chromosome scaffold44064 INFO [2014-07-02 15:11:42,681] [Preprocessor.java:241] [main] Processing chromosome scaffold44098 Processing chromosome scaffold44098 INFO [2014-07-02 15:11:42,789] [Preprocessor.java:241] [main] Processing chromosome scaffold441 Processing chromosome scaffold441 INFO [2014-07-02 15:11:42,799] [Preprocessor.java:241] [main] Processing chromosome scaffold442 Processing chromosome scaffold442 INFO [2014-07-02 15:11:42,813] [Preprocessor.java:241] [main] Processing chromosome scaffold443 Processing chromosome scaffold443 INFO [2014-07-02 15:11:42,898] [Preprocessor.java:241] [main] Processing chromosome scaffold444 Processing chromosome scaffold444 INFO [2014-07-02 15:11:42,967] [Preprocessor.java:241] [main] Processing chromosome scaffold445 Processing chromosome scaffold445 INFO [2014-07-02 15:11:43,072] [Preprocessor.java:241] [main] Processing chromosome scaffold446 Processing chromosome scaffold446 INFO [2014-07-02 15:11:43,086] [Preprocessor.java:241] [main] Processing chromosome scaffold447 Processing chromosome scaffold447 INFO [2014-07-02 15:11:43,153] [Preprocessor.java:241] [main] Processing chromosome scaffold448 Processing chromosome scaffold448 .INFO [2014-07-02 15:11:43,247] [Preprocessor.java:241] [main] Processing chromosome scaffold449 Processing chromosome scaffold449 INFO [2014-07-02 15:11:43,297] [Preprocessor.java:241] [main] Processing chromosome scaffold450 Processing chromosome scaffold450 INFO [2014-07-02 15:11:45,709] [Preprocessor.java:241] [main] Processing chromosome scaffold451 Processing chromosome scaffold451 INFO [2014-07-02 15:11:45,717] [Preprocessor.java:241] [main] Processing chromosome scaffold452 Processing chromosome scaffold452 INFO [2014-07-02 15:11:45,763] [Preprocessor.java:241] [main] Processing chromosome scaffold453 Processing chromosome scaffold453 INFO [2014-07-02 15:11:45,804] [Preprocessor.java:241] [main] Processing chromosome scaffold454 Processing chromosome scaffold454 INFO [2014-07-02 15:11:45,848] [Preprocessor.java:241] [main] Processing chromosome scaffold455 Processing chromosome scaffold455 INFO [2014-07-02 15:11:45,891] [Preprocessor.java:241] [main] Processing chromosome scaffold456 Processing chromosome scaffold456 INFO [2014-07-02 15:11:45,919] [Preprocessor.java:241] [main] Processing chromosome scaffold457 Processing chromosome scaffold457 INFO [2014-07-02 15:11:45,967] [Preprocessor.java:241] [main] Processing chromosome scaffold458 Processing chromosome scaffold458 INFO [2014-07-02 15:11:46,036] [Preprocessor.java:241] [main] Processing chromosome scaffold459 Processing chromosome scaffold459 INFO [2014-07-02 15:11:46,119] [Preprocessor.java:241] [main] Processing chromosome scaffold46 Processing chromosome scaffold46 INFO [2014-07-02 15:11:46,144] [Preprocessor.java:241] [main] Processing chromosome scaffold460 Processing chromosome scaffold460 INFO [2014-07-02 15:11:46,282] [Preprocessor.java:241] [main] Processing chromosome scaffold461 Processing chromosome scaffold461 INFO [2014-07-02 15:11:46,332] [Preprocessor.java:241] [main] Processing chromosome scaffold462 Processing chromosome scaffold462 INFO [2014-07-02 15:11:46,339] [Preprocessor.java:241] [main] Processing chromosome scaffold463 Processing chromosome scaffold463 INFO [2014-07-02 15:11:46,365] [Preprocessor.java:241] [main] Processing chromosome scaffold464 Processing chromosome scaffold464 INFO [2014-07-02 15:11:46,614] [Preprocessor.java:241] [main] Processing chromosome scaffold465 Processing chromosome scaffold465 INFO [2014-07-02 15:11:46,634] [Preprocessor.java:241] [main] Processing chromosome scaffold466 Processing chromosome scaffold466 INFO [2014-07-02 15:11:46,657] [Preprocessor.java:241] [main] Processing chromosome scaffold467 Processing chromosome scaffold467 INFO [2014-07-02 15:11:46,695] [Preprocessor.java:241] [main] Processing chromosome scaffold469 Processing chromosome scaffold469 INFO [2014-07-02 15:11:46,849] [Preprocessor.java:241] [main] Processing chromosome scaffold47 Processing chromosome scaffold47 INFO [2014-07-02 15:11:46,893] [Preprocessor.java:241] [main] Processing chromosome scaffold470 Processing chromosome scaffold470 INFO [2014-07-02 15:11:46,914] [Preprocessor.java:241] [main] Processing chromosome scaffold471 Processing chromosome scaffold471 INFO [2014-07-02 15:11:47,032] [Preprocessor.java:241] [main] Processing chromosome scaffold472 Processing chromosome scaffold472 INFO [2014-07-02 15:11:47,118] [Preprocessor.java:241] [main] Processing chromosome scaffold473 Processing chromosome scaffold473 INFO [2014-07-02 15:11:50,171] [Preprocessor.java:241] [main] Processing chromosome scaffold474 Processing chromosome scaffold474 INFO [2014-07-02 15:11:50,196] [Preprocessor.java:241] [main] Processing chromosome scaffold475 Processing chromosome scaffold475 INFO [2014-07-02 15:11:50,218] [Preprocessor.java:241] [main] Processing chromosome scaffold476 Processing chromosome scaffold476 INFO [2014-07-02 15:11:50,222] [Preprocessor.java:241] [main] Processing chromosome scaffold477 Processing chromosome scaffold477 INFO [2014-07-02 15:11:51,717] [Preprocessor.java:241] [main] Processing chromosome scaffold478 Processing chromosome scaffold478 INFO [2014-07-02 15:11:51,744] [Preprocessor.java:241] [main] Processing chromosome scaffold479 Processing chromosome scaffold479 INFO [2014-07-02 15:11:51,828] [Preprocessor.java:241] [main] Processing chromosome scaffold48 Processing chromosome scaffold48 INFO [2014-07-02 15:11:51,923] [Preprocessor.java:241] [main] Processing chromosome scaffold481 Processing chromosome scaffold481 INFO [2014-07-02 15:11:52,138] [Preprocessor.java:241] [main] Processing chromosome scaffold482 Processing chromosome scaffold482 INFO [2014-07-02 15:11:52,194] [Preprocessor.java:241] [main] Processing chromosome scaffold483 Processing chromosome scaffold483 INFO [2014-07-02 15:11:52,223] [Preprocessor.java:241] [main] Processing chromosome scaffold484 Processing chromosome scaffold484 INFO [2014-07-02 15:11:52,317] [Preprocessor.java:241] [main] Processing chromosome scaffold485 Processing chromosome scaffold485 INFO [2014-07-02 15:11:55,099] [Preprocessor.java:241] [main] Processing chromosome scaffold486 Processing chromosome scaffold486 INFO [2014-07-02 15:11:55,111] [Preprocessor.java:241] [main] Processing chromosome scaffold487 Processing chromosome scaffold487 INFO [2014-07-02 15:12:00,994] [Preprocessor.java:241] [main] Processing chromosome scaffold488 Processing chromosome scaffold488 INFO [2014-07-02 15:12:01,021] [Preprocessor.java:241] [main] Processing chromosome scaffold489 Processing chromosome scaffold489 INFO [2014-07-02 15:12:01,120] [Preprocessor.java:241] [main] Processing chromosome scaffold49 Processing chromosome scaffold49 INFO [2014-07-02 15:12:01,163] [Preprocessor.java:241] [main] Processing chromosome scaffold490 Processing chromosome scaffold490 INFO [2014-07-02 15:12:01,187] [Preprocessor.java:241] [main] Processing chromosome scaffold491 Processing chromosome scaffold491 INFO [2014-07-02 15:12:01,203] [Preprocessor.java:241] [main] Processing chromosome scaffold492 Processing chromosome scaffold492 INFO [2014-07-02 15:12:01,398] [Preprocessor.java:241] [main] Processing chromosome scaffold493 Processing chromosome scaffold493 INFO [2014-07-02 15:12:01,475] [Preprocessor.java:241] [main] Processing chromosome scaffold494 Processing chromosome scaffold494 INFO [2014-07-02 15:12:01,513] [Preprocessor.java:241] [main] Processing chromosome scaffold496 Processing chromosome scaffold496 .INFO [2014-07-02 15:12:01,644] [Preprocessor.java:241] [main] Processing chromosome scaffold497 Processing chromosome scaffold497 INFO [2014-07-02 15:12:01,697] [Preprocessor.java:241] [main] Processing chromosome scaffold498 Processing chromosome scaffold498 INFO [2014-07-02 15:12:01,747] [Preprocessor.java:241] [main] Processing chromosome scaffold499 Processing chromosome scaffold499 INFO [2014-07-02 15:12:01,801] [Preprocessor.java:241] [main] Processing chromosome scaffold5 Processing chromosome scaffold5 INFO [2014-07-02 15:12:01,839] [Preprocessor.java:241] [main] Processing chromosome scaffold50 Processing chromosome scaffold50 INFO [2014-07-02 15:12:01,895] [Preprocessor.java:241] [main] Processing chromosome scaffold500 Processing chromosome scaffold500 INFO [2014-07-02 15:12:03,832] [Preprocessor.java:241] [main] Processing chromosome scaffold501 Processing chromosome scaffold501 INFO [2014-07-02 15:12:04,039] [Preprocessor.java:241] [main] Processing chromosome scaffold502 Processing chromosome scaffold502 INFO [2014-07-02 15:12:04,128] [Preprocessor.java:241] [main] Processing chromosome scaffold503 Processing chromosome scaffold503 INFO [2014-07-02 15:12:04,165] [Preprocessor.java:241] [main] Processing chromosome scaffold504 Processing chromosome scaffold504 INFO [2014-07-02 15:12:04,269] [Preprocessor.java:241] [main] Processing chromosome scaffold505 Processing chromosome scaffold505 INFO [2014-07-02 15:12:04,289] [Preprocessor.java:241] [main] Processing chromosome scaffold506 Processing chromosome scaffold506 INFO [2014-07-02 15:12:04,385] [Preprocessor.java:241] [main] Processing chromosome scaffold507 Processing chromosome scaffold507 INFO [2014-07-02 15:12:04,467] [Preprocessor.java:241] [main] Processing chromosome scaffold508 Processing chromosome scaffold508 INFO [2014-07-02 15:12:06,136] [Preprocessor.java:241] [main] Processing chromosome scaffold509 Processing chromosome scaffold509 INFO [2014-07-02 15:12:06,244] [Preprocessor.java:241] [main] Processing chromosome scaffold510 Processing chromosome scaffold510 INFO [2014-07-02 15:12:06,314] [Preprocessor.java:241] [main] Processing chromosome scaffold511 Processing chromosome scaffold511 INFO [2014-07-02 15:12:06,355] [Preprocessor.java:241] [main] Processing chromosome scaffold513 Processing chromosome scaffold513 INFO [2014-07-02 15:12:06,494] [Preprocessor.java:241] [main] Processing chromosome scaffold514 Processing chromosome scaffold514 INFO [2014-07-02 15:12:06,587] [Preprocessor.java:241] [main] Processing chromosome scaffold515 Processing chromosome scaffold515 INFO [2014-07-02 15:12:06,598] [Preprocessor.java:241] [main] Processing chromosome scaffold516 Processing chromosome scaffold516 INFO [2014-07-02 15:12:06,615] [Preprocessor.java:241] [main] Processing chromosome scaffold517 Processing chromosome scaffold517 INFO [2014-07-02 15:12:06,641] [Preprocessor.java:241] [main] Processing chromosome scaffold518 Processing chromosome scaffold518 INFO [2014-07-02 15:12:06,645] [Preprocessor.java:241] [main] Processing chromosome scaffold520 Processing chromosome scaffold520 INFO [2014-07-02 15:12:06,675] [Preprocessor.java:241] [main] Processing chromosome scaffold521 Processing chromosome scaffold521 INFO [2014-07-02 15:12:06,725] [Preprocessor.java:241] [main] Processing chromosome scaffold522 Processing chromosome scaffold522 INFO [2014-07-02 15:12:06,894] [Preprocessor.java:241] [main] Processing chromosome scaffold523 Processing chromosome scaffold523 INFO [2014-07-02 15:12:06,931] [Preprocessor.java:241] [main] Processing chromosome scaffold524 Processing chromosome scaffold524 INFO [2014-07-02 15:12:06,999] [Preprocessor.java:241] [main] Processing chromosome scaffold525 Processing chromosome scaffold525 INFO [2014-07-02 15:12:07,032] [Preprocessor.java:241] [main] Processing chromosome scaffold526 Processing chromosome scaffold526 INFO [2014-07-02 15:12:07,100] [Preprocessor.java:241] [main] Processing chromosome scaffold527 Processing chromosome scaffold527 INFO [2014-07-02 15:12:13,026] [Preprocessor.java:241] [main] Processing chromosome scaffold528 Processing chromosome scaffold528 INFO [2014-07-02 15:12:13,043] [Preprocessor.java:241] [main] Processing chromosome scaffold53 Processing chromosome scaffold53 INFO [2014-07-02 15:12:13,214] [Preprocessor.java:241] [main] Processing chromosome scaffold531 Processing chromosome scaffold531 INFO [2014-07-02 15:12:13,272] [Preprocessor.java:241] [main] Processing chromosome scaffold532 Processing chromosome scaffold532 INFO [2014-07-02 15:12:13,324] [Preprocessor.java:241] [main] Processing chromosome scaffold533 Processing chromosome scaffold533 INFO [2014-07-02 15:12:13,346] [Preprocessor.java:241] [main] Processing chromosome scaffold534 Processing chromosome scaffold534 INFO [2014-07-02 15:12:13,378] [Preprocessor.java:241] [main] Processing chromosome scaffold535 Processing chromosome scaffold535 INFO [2014-07-02 15:12:13,474] [Preprocessor.java:241] [main] Processing chromosome scaffold536 Processing chromosome scaffold536 INFO [2014-07-02 15:12:13,522] [Preprocessor.java:241] [main] Processing chromosome scaffold54 Processing chromosome scaffold54 INFO [2014-07-02 15:12:13,624] [Preprocessor.java:241] [main] Processing chromosome scaffold540 Processing chromosome scaffold540 INFO [2014-07-02 15:12:13,642] [Preprocessor.java:241] [main] Processing chromosome scaffold541 Processing chromosome scaffold541 30.0% INFO [2014-07-02 15:12:13,723] [Preprocessor.java:241] [main] Processing chromosome scaffold542 Processing chromosome scaffold542 INFO [2014-07-02 15:12:13,778] [Preprocessor.java:241] [main] Processing chromosome scaffold544 Processing chromosome scaffold544 INFO [2014-07-02 15:12:13,965] [Preprocessor.java:241] [main] Processing chromosome scaffold546 Processing chromosome scaffold546 INFO [2014-07-02 15:12:17,107] [Preprocessor.java:241] [main] Processing chromosome scaffold547 Processing chromosome scaffold547 INFO [2014-07-02 15:12:17,236] [Preprocessor.java:241] [main] Processing chromosome scaffold548 Processing chromosome scaffold548 INFO [2014-07-02 15:12:17,266] [Preprocessor.java:241] [main] Processing chromosome scaffold549 Processing chromosome scaffold549 INFO [2014-07-02 15:12:17,314] [Preprocessor.java:241] [main] Processing chromosome scaffold55 Processing chromosome scaffold55 INFO [2014-07-02 15:12:17,330] [Preprocessor.java:241] [main] Processing chromosome scaffold550 Processing chromosome scaffold550 INFO [2014-07-02 15:12:17,397] [Preprocessor.java:241] [main] Processing chromosome scaffold552 Processing chromosome scaffold552 INFO [2014-07-02 15:12:17,478] [Preprocessor.java:241] [main] Processing chromosome scaffold553 Processing chromosome scaffold553 INFO [2014-07-02 15:12:17,500] [Preprocessor.java:241] [main] Processing chromosome scaffold554 Processing chromosome scaffold554 INFO [2014-07-02 15:12:17,513] [Preprocessor.java:241] [main] Processing chromosome scaffold556 Processing chromosome scaffold556 INFO [2014-07-02 15:12:17,800] [Preprocessor.java:241] [main] Processing chromosome scaffold557 Processing chromosome scaffold557 INFO [2014-07-02 15:12:20,282] [Preprocessor.java:241] [main] Processing chromosome scaffold558 Processing chromosome scaffold558 INFO [2014-07-02 15:12:20,330] [Preprocessor.java:241] [main] Processing chromosome scaffold559 Processing chromosome scaffold559 INFO [2014-07-02 15:12:20,345] [Preprocessor.java:241] [main] Processing chromosome scaffold560 Processing chromosome scaffold560 INFO [2014-07-02 15:12:20,411] [Preprocessor.java:241] [main] Processing chromosome scaffold562 Processing chromosome scaffold562 INFO [2014-07-02 15:12:20,472] [Preprocessor.java:241] [main] Processing chromosome scaffold563 Processing chromosome scaffold563 INFO [2014-07-02 15:12:21,564] [Preprocessor.java:241] [main] Processing chromosome scaffold564 Processing chromosome scaffold564 INFO [2014-07-02 15:12:21,661] [Preprocessor.java:241] [main] Processing chromosome scaffold565 Processing chromosome scaffold565 INFO [2014-07-02 15:12:21,674] [Preprocessor.java:241] [main] Processing chromosome scaffold568 Processing chromosome scaffold568 INFO [2014-07-02 15:12:21,687] [Preprocessor.java:241] [main] Processing chromosome scaffold569 Processing chromosome scaffold569 INFO [2014-07-02 15:12:22,221] [Preprocessor.java:241] [main] Processing chromosome scaffold57 Processing chromosome scaffold57 INFO [2014-07-02 15:12:22,351] [Preprocessor.java:241] [main] Processing chromosome scaffold570 Processing chromosome scaffold570 INFO [2014-07-02 15:12:22,406] [Preprocessor.java:241] [main] Processing chromosome scaffold572 Processing chromosome scaffold572 INFO [2014-07-02 15:12:22,452] [Preprocessor.java:241] [main] Processing chromosome scaffold574 Processing chromosome scaffold574 INFO [2014-07-02 15:12:22,501] [Preprocessor.java:241] [main] Processing chromosome scaffold575 Processing chromosome scaffold575 INFO [2014-07-02 15:12:22,580] [Preprocessor.java:241] [main] Processing chromosome scaffold576 Processing chromosome scaffold576 INFO [2014-07-02 15:12:22,736] [Preprocessor.java:241] [main] Processing chromosome scaffold577 Processing chromosome scaffold577 INFO [2014-07-02 15:12:22,768] [Preprocessor.java:241] [main] Processing chromosome scaffold578 Processing chromosome scaffold578 INFO [2014-07-02 15:12:24,663] [Preprocessor.java:241] [main] Processing chromosome scaffold579 Processing chromosome scaffold579 INFO [2014-07-02 15:12:26,103] [Preprocessor.java:241] [main] Processing chromosome scaffold58 Processing chromosome scaffold58 INFO [2014-07-02 15:12:26,176] [Preprocessor.java:241] [main] Processing chromosome scaffold580 Processing chromosome scaffold580 INFO [2014-07-02 15:12:26,285] [Preprocessor.java:241] [main] Processing chromosome scaffold581 Processing chromosome scaffold581 INFO [2014-07-02 15:12:26,320] [Preprocessor.java:241] [main] Processing chromosome scaffold582 Processing chromosome scaffold582 INFO [2014-07-02 15:12:26,339] [Preprocessor.java:241] [main] Processing chromosome scaffold583 Processing chromosome scaffold583 .INFO [2014-07-02 15:12:26,450] [Preprocessor.java:241] [main] Processing chromosome scaffold585 Processing chromosome scaffold585 INFO [2014-07-02 15:12:26,556] [Preprocessor.java:241] [main] Processing chromosome scaffold586 Processing chromosome scaffold586 INFO [2014-07-02 15:12:27,214] [Preprocessor.java:241] [main] Processing chromosome scaffold587 Processing chromosome scaffold587 INFO [2014-07-02 15:12:27,276] [Preprocessor.java:241] [main] Processing chromosome scaffold588 Processing chromosome scaffold588 INFO [2014-07-02 15:12:27,349] [Preprocessor.java:241] [main] Processing chromosome scaffold589 Processing chromosome scaffold589 INFO [2014-07-02 15:12:27,377] [Preprocessor.java:241] [main] Processing chromosome scaffold59 Processing chromosome scaffold59 INFO [2014-07-02 15:12:27,423] [Preprocessor.java:241] [main] Processing chromosome scaffold591 Processing chromosome scaffold591 INFO [2014-07-02 15:12:30,614] [Preprocessor.java:241] [main] Processing chromosome scaffold592 Processing chromosome scaffold592 INFO [2014-07-02 15:12:30,670] [Preprocessor.java:241] [main] Processing chromosome scaffold593 Processing chromosome scaffold593 INFO [2014-07-02 15:12:30,739] [Preprocessor.java:241] [main] Processing chromosome scaffold594 Processing chromosome scaffold594 INFO [2014-07-02 15:12:31,564] [Preprocessor.java:241] [main] Processing chromosome scaffold595 Processing chromosome scaffold595 INFO [2014-07-02 15:12:31,586] [Preprocessor.java:241] [main] Processing chromosome scaffold596 Processing chromosome scaffold596 INFO [2014-07-02 15:12:31,672] [Preprocessor.java:241] [main] Processing chromosome scaffold597 Processing chromosome scaffold597 INFO [2014-07-02 15:12:31,706] [Preprocessor.java:241] [main] Processing chromosome scaffold598 Processing chromosome scaffold598 INFO [2014-07-02 15:12:31,716] [Preprocessor.java:241] [main] Processing chromosome scaffold599 Processing chromosome scaffold599 INFO [2014-07-02 15:12:36,060] [Preprocessor.java:241] [main] Processing chromosome scaffold6 Processing chromosome scaffold6 INFO [2014-07-02 15:12:36,156] [Preprocessor.java:241] [main] Processing chromosome scaffold60 Processing chromosome scaffold60 INFO [2014-07-02 15:12:36,188] [Preprocessor.java:241] [main] Processing chromosome scaffold600 Processing chromosome scaffold600 INFO [2014-07-02 15:12:36,203] [Preprocessor.java:241] [main] Processing chromosome scaffold601 Processing chromosome scaffold601 INFO [2014-07-02 15:12:39,277] [Preprocessor.java:241] [main] Processing chromosome scaffold602 Processing chromosome scaffold602 INFO [2014-07-02 15:12:39,404] [Preprocessor.java:241] [main] Processing chromosome scaffold603 Processing chromosome scaffold603 INFO [2014-07-02 15:12:39,440] [Preprocessor.java:241] [main] Processing chromosome scaffold604 Processing chromosome scaffold604 INFO [2014-07-02 15:12:39,498] [Preprocessor.java:241] [main] Processing chromosome scaffold605 Processing chromosome scaffold605 INFO [2014-07-02 15:12:39,539] [Preprocessor.java:241] [main] Processing chromosome scaffold606 Processing chromosome scaffold606 INFO [2014-07-02 15:12:39,581] [Preprocessor.java:241] [main] Processing chromosome scaffold607 Processing chromosome scaffold607 INFO [2014-07-02 15:12:39,605] [Preprocessor.java:241] [main] Processing chromosome scaffold608 Processing chromosome scaffold608 INFO [2014-07-02 15:12:39,693] [Preprocessor.java:241] [main] Processing chromosome scaffold609 Processing chromosome scaffold609 INFO [2014-07-02 15:12:39,744] [Preprocessor.java:241] [main] Processing chromosome scaffold61 Processing chromosome scaffold61 INFO [2014-07-02 15:12:39,821] [Preprocessor.java:241] [main] Processing chromosome scaffold610 Processing chromosome scaffold610 INFO [2014-07-02 15:12:39,982] [Preprocessor.java:241] [main] Processing chromosome scaffold612 Processing chromosome scaffold612 INFO [2014-07-02 15:12:40,034] [Preprocessor.java:241] [main] Processing chromosome scaffold613 Processing chromosome scaffold613 INFO [2014-07-02 15:12:40,041] [Preprocessor.java:241] [main] Processing chromosome scaffold614 Processing chromosome scaffold614 INFO [2014-07-02 15:12:40,106] [Preprocessor.java:241] [main] Processing chromosome scaffold615 Processing chromosome scaffold615 INFO [2014-07-02 15:12:40,129] [Preprocessor.java:241] [main] Processing chromosome scaffold616 Processing chromosome scaffold616 INFO [2014-07-02 15:12:40,883] [Preprocessor.java:241] [main] Processing chromosome scaffold617 Processing chromosome scaffold617 INFO [2014-07-02 15:12:40,994] [Preprocessor.java:241] [main] Processing chromosome scaffold619 Processing chromosome scaffold619 INFO [2014-07-02 15:12:41,240] [Preprocessor.java:241] [main] Processing chromosome scaffold62 Processing chromosome scaffold62 INFO [2014-07-02 15:12:41,310] [Preprocessor.java:241] [main] Processing chromosome scaffold620 Processing chromosome scaffold620 INFO [2014-07-02 15:12:41,326] [Preprocessor.java:241] [main] Processing chromosome scaffold621 Processing chromosome scaffold621 .INFO [2014-07-02 15:12:41,375] [Preprocessor.java:241] [main] Processing chromosome scaffold622 Processing chromosome scaffold622 INFO [2014-07-02 15:12:41,461] [Preprocessor.java:241] [main] Processing chromosome scaffold624 Processing chromosome scaffold624 INFO [2014-07-02 15:12:41,488] [Preprocessor.java:241] [main] Processing chromosome scaffold625 Processing chromosome scaffold625 INFO [2014-07-02 15:12:46,075] [Preprocessor.java:241] [main] Processing chromosome scaffold626 Processing chromosome scaffold626 INFO [2014-07-02 15:12:46,130] [Preprocessor.java:241] [main] Processing chromosome scaffold63 Processing chromosome scaffold63 INFO [2014-07-02 15:12:46,198] [Preprocessor.java:241] [main] Processing chromosome scaffold630 Processing chromosome scaffold630 INFO [2014-07-02 15:12:46,314] [Preprocessor.java:241] [main] Processing chromosome scaffold631 Processing chromosome scaffold631 INFO [2014-07-02 15:12:46,417] [Preprocessor.java:241] [main] Processing chromosome scaffold632 Processing chromosome scaffold632 INFO [2014-07-02 15:12:46,530] [Preprocessor.java:241] [main] Processing chromosome scaffold633 Processing chromosome scaffold633 INFO [2014-07-02 15:12:46,554] [Preprocessor.java:241] [main] Processing chromosome scaffold634 Processing chromosome scaffold634 INFO [2014-07-02 15:12:46,565] [Preprocessor.java:241] [main] Processing chromosome scaffold635 Processing chromosome scaffold635 INFO [2014-07-02 15:12:46,598] [Preprocessor.java:241] [main] Processing chromosome scaffold636 Processing chromosome scaffold636 INFO [2014-07-02 15:12:46,624] [Preprocessor.java:241] [main] Processing chromosome scaffold638 Processing chromosome scaffold638 INFO [2014-07-02 15:12:46,643] [Preprocessor.java:241] [main] Processing chromosome scaffold639 Processing chromosome scaffold639 INFO [2014-07-02 15:12:46,663] [Preprocessor.java:241] [main] Processing chromosome scaffold64 Processing chromosome scaffold64 INFO [2014-07-02 15:12:46,713] [Preprocessor.java:241] [main] Processing chromosome scaffold640 Processing chromosome scaffold640 INFO [2014-07-02 15:12:46,756] [Preprocessor.java:241] [main] Processing chromosome scaffold641 Processing chromosome scaffold641 INFO [2014-07-02 15:12:46,762] [Preprocessor.java:241] [main] Processing chromosome scaffold642 Processing chromosome scaffold642 INFO [2014-07-02 15:12:46,797] [Preprocessor.java:241] [main] Processing chromosome scaffold643 Processing chromosome scaffold643 INFO [2014-07-02 15:12:46,836] [Preprocessor.java:241] [main] Processing chromosome scaffold644 Processing chromosome scaffold644 INFO [2014-07-02 15:12:46,862] [Preprocessor.java:241] [main] Processing chromosome scaffold645 Processing chromosome scaffold645 INFO [2014-07-02 15:12:46,872] [Preprocessor.java:241] [main] Processing chromosome scaffold646 Processing chromosome scaffold646 INFO [2014-07-02 15:12:46,904] [Preprocessor.java:241] [main] Processing chromosome scaffold647 Processing chromosome scaffold647 INFO [2014-07-02 15:12:46,957] [Preprocessor.java:241] [main] Processing chromosome scaffold649 Processing chromosome scaffold649 INFO [2014-07-02 15:12:46,969] [Preprocessor.java:241] [main] Processing chromosome scaffold65 Processing chromosome scaffold65 INFO [2014-07-02 15:12:47,017] [Preprocessor.java:241] [main] Processing chromosome scaffold654 Processing chromosome scaffold654 INFO [2014-07-02 15:12:47,038] [Preprocessor.java:241] [main] Processing chromosome scaffold655 Processing chromosome scaffold655 INFO [2014-07-02 15:12:47,119] [Preprocessor.java:241] [main] Processing chromosome scaffold656 Processing chromosome scaffold656 INFO [2014-07-02 15:12:47,126] [Preprocessor.java:241] [main] Processing chromosome scaffold657 Processing chromosome scaffold657 INFO [2014-07-02 15:12:47,156] [Preprocessor.java:241] [main] Processing chromosome scaffold658 Processing chromosome scaffold658 INFO [2014-07-02 15:12:47,202] [Preprocessor.java:241] [main] Processing chromosome scaffold659 Processing chromosome scaffold659 INFO [2014-07-02 15:12:47,273] [Preprocessor.java:241] [main] Processing chromosome scaffold66 Processing chromosome scaffold66 INFO [2014-07-02 15:12:52,388] [Preprocessor.java:241] [main] Processing chromosome scaffold660 Processing chromosome scaffold660 INFO [2014-07-02 15:12:52,451] [Preprocessor.java:241] [main] Processing chromosome scaffold661 Processing chromosome scaffold661 INFO [2014-07-02 15:12:52,465] [Preprocessor.java:241] [main] Processing chromosome scaffold663 Processing chromosome scaffold663 INFO [2014-07-02 15:12:52,529] [Preprocessor.java:241] [main] Processing chromosome scaffold664 Processing chromosome scaffold664 INFO [2014-07-02 15:12:52,591] [Preprocessor.java:241] [main] Processing chromosome scaffold665 Processing chromosome scaffold665 INFO [2014-07-02 15:12:52,658] [Preprocessor.java:241] [main] Processing chromosome scaffold666 Processing chromosome scaffold666 INFO [2014-07-02 15:12:52,686] [Preprocessor.java:241] [main] Processing chromosome scaffold667 Processing chromosome scaffold667 INFO [2014-07-02 15:12:52,742] [Preprocessor.java:241] [main] Processing chromosome scaffold668 Processing chromosome scaffold668 INFO [2014-07-02 15:12:52,755] [Preprocessor.java:241] [main] Processing chromosome scaffold669 Processing chromosome scaffold669 INFO [2014-07-02 15:12:52,774] [Preprocessor.java:241] [main] Processing chromosome scaffold67 Processing chromosome scaffold67 INFO [2014-07-02 15:12:52,850] [Preprocessor.java:241] [main] Processing chromosome scaffold670 Processing chromosome scaffold670 INFO [2014-07-02 15:12:52,882] [Preprocessor.java:241] [main] Processing chromosome scaffold671 Processing chromosome scaffold671 INFO [2014-07-02 15:12:52,895] [Preprocessor.java:241] [main] Processing chromosome scaffold672 Processing chromosome scaffold672 INFO [2014-07-02 15:12:52,979] [Preprocessor.java:241] [main] Processing chromosome scaffold673 Processing chromosome scaffold673 INFO [2014-07-02 15:12:53,031] [Preprocessor.java:241] [main] Processing chromosome scaffold674 Processing chromosome scaffold674 INFO [2014-07-02 15:12:53,052] [Preprocessor.java:241] [main] Processing chromosome scaffold675 Processing chromosome scaffold675 INFO [2014-07-02 15:12:53,148] [Preprocessor.java:241] [main] Processing chromosome scaffold676 Processing chromosome scaffold676 INFO [2014-07-02 15:12:53,228] [Preprocessor.java:241] [main] Processing chromosome scaffold677 Processing chromosome scaffold677 INFO [2014-07-02 15:12:53,271] [Preprocessor.java:241] [main] Processing chromosome scaffold678 Processing chromosome scaffold678 INFO [2014-07-02 15:12:56,425] [Preprocessor.java:241] [main] Processing chromosome scaffold68 Processing chromosome scaffold68 INFO [2014-07-02 15:12:56,456] [Preprocessor.java:241] [main] Processing chromosome scaffold680 Processing chromosome scaffold680 INFO [2014-07-02 15:12:56,481] [Preprocessor.java:241] [main] Processing chromosome scaffold681 Processing chromosome scaffold681 INFO [2014-07-02 15:12:56,526] [Preprocessor.java:241] [main] Processing chromosome scaffold682 Processing chromosome scaffold682 INFO [2014-07-02 15:12:56,555] [Preprocessor.java:241] [main] Processing chromosome scaffold683 Processing chromosome scaffold683 INFO [2014-07-02 15:12:57,594] [Preprocessor.java:241] [main] Processing chromosome scaffold685 Processing chromosome scaffold685 INFO [2014-07-02 15:12:57,634] [Preprocessor.java:241] [main] Processing chromosome scaffold686 Processing chromosome scaffold686 INFO [2014-07-02 15:12:57,660] [Preprocessor.java:241] [main] Processing chromosome scaffold687 Processing chromosome scaffold687 INFO [2014-07-02 15:12:57,684] [Preprocessor.java:241] [main] Processing chromosome scaffold689 Processing chromosome scaffold689 INFO [2014-07-02 15:12:57,734] [Preprocessor.java:241] [main] Processing chromosome scaffold69 Processing chromosome scaffold69 INFO [2014-07-02 15:12:57,753] [Preprocessor.java:241] [main] Processing chromosome scaffold690 Processing chromosome scaffold690 INFO [2014-07-02 15:12:57,763] [Preprocessor.java:241] [main] Processing chromosome scaffold694 Processing chromosome scaffold694 INFO [2014-07-02 15:12:57,800] [Preprocessor.java:241] [main] Processing chromosome scaffold695 Processing chromosome scaffold695 .INFO [2014-07-02 15:12:58,504] [Preprocessor.java:241] [main] Processing chromosome scaffold696 Processing chromosome scaffold696 INFO [2014-07-02 15:12:58,551] [Preprocessor.java:241] [main] Processing chromosome scaffold698 Processing chromosome scaffold698 INFO [2014-07-02 15:12:58,626] [Preprocessor.java:241] [main] Processing chromosome scaffold7 Processing chromosome scaffold7 INFO [2014-07-02 15:12:58,649] [Preprocessor.java:241] [main] Processing chromosome scaffold70 Processing chromosome scaffold70 INFO [2014-07-02 15:12:58,849] [Preprocessor.java:241] [main] Processing chromosome scaffold700 Processing chromosome scaffold700 INFO [2014-07-02 15:12:58,867] [Preprocessor.java:241] [main] Processing chromosome scaffold701 Processing chromosome scaffold701 INFO [2014-07-02 15:12:58,870] [Preprocessor.java:241] [main] Processing chromosome scaffold702 Processing chromosome scaffold702 INFO [2014-07-02 15:12:58,875] [Preprocessor.java:241] [main] Processing chromosome scaffold703 Processing chromosome scaffold703 INFO [2014-07-02 15:12:58,878] [Preprocessor.java:241] [main] Processing chromosome scaffold705 Processing chromosome scaffold705 INFO [2014-07-02 15:13:00,464] [Preprocessor.java:241] [main] Processing chromosome scaffold706 Processing chromosome scaffold706 INFO [2014-07-02 15:13:00,517] [Preprocessor.java:241] [main] Processing chromosome scaffold707 Processing chromosome scaffold707 INFO [2014-07-02 15:13:00,556] [Preprocessor.java:241] [main] Processing chromosome scaffold709 Processing chromosome scaffold709 INFO [2014-07-02 15:13:00,615] [Preprocessor.java:241] [main] Processing chromosome scaffold71 Processing chromosome scaffold71 INFO [2014-07-02 15:13:00,681] [Preprocessor.java:241] [main] Processing chromosome scaffold710 Processing chromosome scaffold710 INFO [2014-07-02 15:13:00,688] [Preprocessor.java:241] [main] Processing chromosome scaffold711 Processing chromosome scaffold711 INFO [2014-07-02 15:13:00,700] [Preprocessor.java:241] [main] Processing chromosome scaffold712 Processing chromosome scaffold712 INFO [2014-07-02 15:13:00,778] [Preprocessor.java:241] [main] Processing chromosome scaffold713 Processing chromosome scaffold713 INFO [2014-07-02 15:13:00,876] [Preprocessor.java:241] [main] Processing chromosome scaffold714 Processing chromosome scaffold714 INFO [2014-07-02 15:13:00,936] [Preprocessor.java:241] [main] Processing chromosome scaffold715 Processing chromosome scaffold715 INFO [2014-07-02 15:13:00,972] [Preprocessor.java:241] [main] Processing chromosome scaffold716 Processing chromosome scaffold716 INFO [2014-07-02 15:13:02,431] [Preprocessor.java:241] [main] Processing chromosome scaffold718 Processing chromosome scaffold718 INFO [2014-07-02 15:13:02,481] [Preprocessor.java:241] [main] Processing chromosome scaffold719 Processing chromosome scaffold719 INFO [2014-07-02 15:13:02,510] [Preprocessor.java:241] [main] Processing chromosome scaffold72 Processing chromosome scaffold72 INFO [2014-07-02 15:13:02,554] [Preprocessor.java:241] [main] Processing chromosome scaffold720 Processing chromosome scaffold720 INFO [2014-07-02 15:13:02,632] [Preprocessor.java:241] [main] Processing chromosome scaffold721 Processing chromosome scaffold721 INFO [2014-07-02 15:13:06,292] [Preprocessor.java:241] [main] Processing chromosome scaffold722 Processing chromosome scaffold722 INFO [2014-07-02 15:13:10,132] [Preprocessor.java:241] [main] Processing chromosome scaffold723 Processing chromosome scaffold723 INFO [2014-07-02 15:13:10,203] [Preprocessor.java:241] [main] Processing chromosome scaffold724 Processing chromosome scaffold724 INFO [2014-07-02 15:13:10,247] [Preprocessor.java:241] [main] Processing chromosome scaffold726 Processing chromosome scaffold726 INFO [2014-07-02 15:13:10,331] [Preprocessor.java:241] [main] Processing chromosome scaffold728 Processing chromosome scaffold728 INFO [2014-07-02 15:13:10,435] [Preprocessor.java:241] [main] Processing chromosome scaffold729 Processing chromosome scaffold729 INFO [2014-07-02 15:13:10,453] [Preprocessor.java:241] [main] Processing chromosome scaffold73 Processing chromosome scaffold73 INFO [2014-07-02 15:13:10,463] [Preprocessor.java:241] [main] Processing chromosome scaffold730 Processing chromosome scaffold730 INFO [2014-07-02 15:13:10,556] [Preprocessor.java:241] [main] Processing chromosome scaffold733 Processing chromosome scaffold733 INFO [2014-07-02 15:13:10,674] [Preprocessor.java:241] [main] Processing chromosome scaffold734 Processing chromosome scaffold734 INFO [2014-07-02 15:13:10,696] [Preprocessor.java:241] [main] Processing chromosome scaffold735 Processing chromosome scaffold735 INFO [2014-07-02 15:13:10,716] [Preprocessor.java:241] [main] Processing chromosome scaffold736 Processing chromosome scaffold736 INFO [2014-07-02 15:13:10,735] [Preprocessor.java:241] [main] Processing chromosome scaffold737 Processing chromosome scaffold737 INFO [2014-07-02 15:13:10,824] [Preprocessor.java:241] [main] Processing chromosome scaffold738 Processing chromosome scaffold738 INFO [2014-07-02 15:13:10,848] [Preprocessor.java:241] [main] Processing chromosome scaffold739 Processing chromosome scaffold739 INFO [2014-07-02 15:13:10,855] [Preprocessor.java:241] [main] Processing chromosome scaffold74 Processing chromosome scaffold74 INFO [2014-07-02 15:13:10,862] [Preprocessor.java:241] [main] Processing chromosome scaffold740 Processing chromosome scaffold740 INFO [2014-07-02 15:13:10,864] [Preprocessor.java:241] [main] Processing chromosome scaffold742 Processing chromosome scaffold742 INFO [2014-07-02 15:13:10,869] [Preprocessor.java:241] [main] Processing chromosome scaffold743 Processing chromosome scaffold743 INFO [2014-07-02 15:13:10,905] [Preprocessor.java:241] [main] Processing chromosome scaffold744 Processing chromosome scaffold744 INFO [2014-07-02 15:13:10,927] [Preprocessor.java:241] [main] Processing chromosome scaffold746 Processing chromosome scaffold746 INFO [2014-07-02 15:13:10,929] [Preprocessor.java:241] [main] Processing chromosome scaffold747 Processing chromosome scaffold747 INFO [2014-07-02 15:13:15,318] [Preprocessor.java:241] [main] Processing chromosome scaffold748 Processing chromosome scaffold748 INFO [2014-07-02 15:13:15,361] [Preprocessor.java:241] [main] Processing chromosome scaffold749 Processing chromosome scaffold749 INFO [2014-07-02 15:13:15,395] [Preprocessor.java:241] [main] Processing chromosome scaffold75 Processing chromosome scaffold75 INFO [2014-07-02 15:13:15,428] [Preprocessor.java:241] [main] Processing chromosome scaffold750 Processing chromosome scaffold750 INFO [2014-07-02 15:13:15,495] [Preprocessor.java:241] [main] Processing chromosome scaffold751 Processing chromosome scaffold751 INFO [2014-07-02 15:13:15,584] [Preprocessor.java:241] [main] Processing chromosome scaffold752 Processing chromosome scaffold752 INFO [2014-07-02 15:13:15,613] [Preprocessor.java:241] [main] Processing chromosome scaffold753 Processing chromosome scaffold753 .INFO [2014-07-02 15:13:15,687] [Preprocessor.java:241] [main] Processing chromosome scaffold754 Processing chromosome scaffold754 INFO [2014-07-02 15:13:15,759] [Preprocessor.java:241] [main] Processing chromosome scaffold756 Processing chromosome scaffold756 INFO [2014-07-02 15:13:15,815] [Preprocessor.java:241] [main] Processing chromosome scaffold758 Processing chromosome scaffold758 INFO [2014-07-02 15:13:15,865] [Preprocessor.java:241] [main] Processing chromosome scaffold759 Processing chromosome scaffold759 INFO [2014-07-02 15:13:15,908] [Preprocessor.java:241] [main] Processing chromosome scaffold76 Processing chromosome scaffold76 INFO [2014-07-02 15:13:15,983] [Preprocessor.java:241] [main] Processing chromosome scaffold760 Processing chromosome scaffold760 INFO [2014-07-02 15:13:16,134] [Preprocessor.java:241] [main] Processing chromosome scaffold761 Processing chromosome scaffold761 INFO [2014-07-02 15:13:16,191] [Preprocessor.java:241] [main] Processing chromosome scaffold762 Processing chromosome scaffold762 INFO [2014-07-02 15:13:16,243] [Preprocessor.java:241] [main] Processing chromosome scaffold763 Processing chromosome scaffold763 INFO [2014-07-02 15:13:16,256] [Preprocessor.java:241] [main] Processing chromosome scaffold764 Processing chromosome scaffold764 INFO [2014-07-02 15:13:16,270] [Preprocessor.java:241] [main] Processing chromosome scaffold765 Processing chromosome scaffold765 INFO [2014-07-02 15:13:16,363] [Preprocessor.java:241] [main] Processing chromosome scaffold766 Processing chromosome scaffold766 INFO [2014-07-02 15:13:16,389] [Preprocessor.java:241] [main] Processing chromosome scaffold767 Processing chromosome scaffold767 INFO [2014-07-02 15:13:16,471] [Preprocessor.java:241] [main] Processing chromosome scaffold769 Processing chromosome scaffold769 INFO [2014-07-02 15:13:16,480] [Preprocessor.java:241] [main] Processing chromosome scaffold77 Processing chromosome scaffold77 INFO [2014-07-02 15:13:18,336] [Preprocessor.java:241] [main] Processing chromosome scaffold770 Processing chromosome scaffold770 INFO [2014-07-02 15:13:18,368] [Preprocessor.java:241] [main] Processing chromosome scaffold771 Processing chromosome scaffold771 INFO [2014-07-02 15:13:18,985] [Preprocessor.java:241] [main] Processing chromosome scaffold772 Processing chromosome scaffold772 INFO [2014-07-02 15:13:19,033] [Preprocessor.java:241] [main] Processing chromosome scaffold773 Processing chromosome scaffold773 INFO [2014-07-02 15:13:19,087] [Preprocessor.java:241] [main] Processing chromosome scaffold775 Processing chromosome scaffold775 INFO [2014-07-02 15:13:19,138] [Preprocessor.java:241] [main] Processing chromosome scaffold776 Processing chromosome scaffold776 INFO [2014-07-02 15:13:19,149] [Preprocessor.java:241] [main] Processing chromosome scaffold778 Processing chromosome scaffold778 INFO [2014-07-02 15:13:19,154] [Preprocessor.java:241] [main] Processing chromosome scaffold78 Processing chromosome scaffold78 INFO [2014-07-02 15:13:19,184] [Preprocessor.java:241] [main] Processing chromosome scaffold780 Processing chromosome scaffold780 INFO [2014-07-02 15:13:19,273] [Preprocessor.java:241] [main] Processing chromosome scaffold781 Processing chromosome scaffold781 INFO [2014-07-02 15:13:19,280] [Preprocessor.java:241] [main] Processing chromosome scaffold782 Processing chromosome scaffold782 INFO [2014-07-02 15:13:19,354] [Preprocessor.java:241] [main] Processing chromosome scaffold783 Processing chromosome scaffold783 INFO [2014-07-02 15:13:19,418] [Preprocessor.java:241] [main] Processing chromosome scaffold784 Processing chromosome scaffold784 INFO [2014-07-02 15:13:19,518] [Preprocessor.java:241] [main] Processing chromosome scaffold786 Processing chromosome scaffold786 INFO [2014-07-02 15:13:23,073] [Preprocessor.java:241] [main] Processing chromosome scaffold787 Processing chromosome scaffold787 INFO [2014-07-02 15:13:23,145] [Preprocessor.java:241] [main] Processing chromosome scaffold788 Processing chromosome scaffold788 INFO [2014-07-02 15:13:23,164] [Preprocessor.java:241] [main] Processing chromosome scaffold789 Processing chromosome scaffold789 INFO [2014-07-02 15:13:23,278] [Preprocessor.java:241] [main] Processing chromosome scaffold79 Processing chromosome scaffold79 INFO [2014-07-02 15:13:23,446] [Preprocessor.java:241] [main] Processing chromosome scaffold790 Processing chromosome scaffold790 INFO [2014-07-02 15:13:23,532] [Preprocessor.java:241] [main] Processing chromosome scaffold793 Processing chromosome scaffold793 INFO [2014-07-02 15:13:23,572] [Preprocessor.java:241] [main] Processing chromosome scaffold794 Processing chromosome scaffold794 INFO [2014-07-02 15:13:23,686] [Preprocessor.java:241] [main] Processing chromosome scaffold795 Processing chromosome scaffold795 INFO [2014-07-02 15:13:23,700] [Preprocessor.java:241] [main] Processing chromosome scaffold796 Processing chromosome scaffold796 INFO [2014-07-02 15:13:23,721] [Preprocessor.java:241] [main] Processing chromosome scaffold799 Processing chromosome scaffold799 INFO [2014-07-02 15:13:23,752] [Preprocessor.java:241] [main] Processing chromosome scaffold80 Processing chromosome scaffold80 INFO [2014-07-02 15:13:23,769] [Preprocessor.java:241] [main] Processing chromosome scaffold800 Processing chromosome scaffold800 INFO [2014-07-02 15:13:23,792] [Preprocessor.java:241] [main] Processing chromosome scaffold801 Processing chromosome scaffold801 INFO [2014-07-02 15:13:23,896] [Preprocessor.java:241] [main] Processing chromosome scaffold802 Processing chromosome scaffold802 INFO [2014-07-02 15:13:30,689] [Preprocessor.java:241] [main] Processing chromosome scaffold803 Processing chromosome scaffold803 INFO [2014-07-02 15:13:30,724] [Preprocessor.java:241] [main] Processing chromosome scaffold804 Processing chromosome scaffold804 INFO [2014-07-02 15:13:30,750] [Preprocessor.java:241] [main] Processing chromosome scaffold805 Processing chromosome scaffold805 INFO [2014-07-02 15:13:30,757] [Preprocessor.java:241] [main] Processing chromosome scaffold806 Processing chromosome scaffold806 INFO [2014-07-02 15:13:30,782] [Preprocessor.java:241] [main] Processing chromosome scaffold807 Processing chromosome scaffold807 INFO [2014-07-02 15:13:30,811] [Preprocessor.java:241] [main] Processing chromosome scaffold808 Processing chromosome scaffold808 .INFO [2014-07-02 15:13:30,873] [Preprocessor.java:241] [main] Processing chromosome scaffold809 Processing chromosome scaffold809 INFO [2014-07-02 15:13:30,895] [Preprocessor.java:241] [main] Processing chromosome scaffold81 Processing chromosome scaffold81 INFO [2014-07-02 15:13:30,920] [Preprocessor.java:241] [main] Processing chromosome scaffold810 Processing chromosome scaffold810 INFO [2014-07-02 15:13:30,949] [Preprocessor.java:241] [main] Processing chromosome scaffold811 Processing chromosome scaffold811 INFO [2014-07-02 15:13:30,972] [Preprocessor.java:241] [main] Processing chromosome scaffold812 Processing chromosome scaffold812 INFO [2014-07-02 15:13:30,985] [Preprocessor.java:241] [main] Processing chromosome scaffold814 Processing chromosome scaffold814 INFO [2014-07-02 15:13:31,021] [Preprocessor.java:241] [main] Processing chromosome scaffold815 Processing chromosome scaffold815 INFO [2014-07-02 15:13:31,032] [Preprocessor.java:241] [main] Processing chromosome scaffold816 Processing chromosome scaffold816 INFO [2014-07-02 15:13:31,062] [Preprocessor.java:241] [main] Processing chromosome scaffold817 Processing chromosome scaffold817 INFO [2014-07-02 15:13:31,150] [Preprocessor.java:241] [main] Processing chromosome scaffold818 Processing chromosome scaffold818 INFO [2014-07-02 15:13:31,183] [Preprocessor.java:241] [main] Processing chromosome scaffold819 Processing chromosome scaffold819 INFO [2014-07-02 15:13:31,209] [Preprocessor.java:241] [main] Processing chromosome scaffold82 Processing chromosome scaffold82 INFO [2014-07-02 15:13:31,328] [Preprocessor.java:241] [main] Processing chromosome scaffold820 Processing chromosome scaffold820 INFO [2014-07-02 15:13:31,350] [Preprocessor.java:241] [main] Processing chromosome scaffold821 Processing chromosome scaffold821 INFO [2014-07-02 15:13:31,357] [Preprocessor.java:241] [main] Processing chromosome scaffold822 Processing chromosome scaffold822 INFO [2014-07-02 15:13:31,369] [Preprocessor.java:241] [main] Processing chromosome scaffold823 Processing chromosome scaffold823 INFO [2014-07-02 15:13:31,387] [Preprocessor.java:241] [main] Processing chromosome scaffold824 Processing chromosome scaffold824 INFO [2014-07-02 15:13:31,395] [Preprocessor.java:241] [main] Processing chromosome scaffold825 Processing chromosome scaffold825 INFO [2014-07-02 15:13:31,459] [Preprocessor.java:241] [main] Processing chromosome scaffold826 Processing chromosome scaffold826 INFO [2014-07-02 15:13:31,471] [Preprocessor.java:241] [main] Processing chromosome scaffold827 Processing chromosome scaffold827 INFO [2014-07-02 15:13:31,528] [Preprocessor.java:241] [main] Processing chromosome scaffold828 Processing chromosome scaffold828 INFO [2014-07-02 15:13:31,583] [Preprocessor.java:241] [main] Processing chromosome scaffold829 Processing chromosome scaffold829 INFO [2014-07-02 15:13:31,635] [Preprocessor.java:241] [main] Processing chromosome scaffold831 Processing chromosome scaffold831 INFO [2014-07-02 15:13:31,673] [Preprocessor.java:241] [main] Processing chromosome scaffold833 Processing chromosome scaffold833 INFO [2014-07-02 15:13:31,721] [Preprocessor.java:241] [main] Processing chromosome scaffold834 Processing chromosome scaffold834 INFO [2014-07-02 15:13:31,754] [Preprocessor.java:241] [main] Processing chromosome scaffold835 Processing chromosome scaffold835 INFO [2014-07-02 15:13:31,828] [Preprocessor.java:241] [main] Processing chromosome scaffold836 Processing chromosome scaffold836 INFO [2014-07-02 15:13:34,481] [Preprocessor.java:241] [main] Processing chromosome scaffold837 Processing chromosome scaffold837 INFO [2014-07-02 15:13:34,529] [Preprocessor.java:241] [main] Processing chromosome scaffold838 Processing chromosome scaffold838 INFO [2014-07-02 15:13:34,564] [Preprocessor.java:241] [main] Processing chromosome scaffold839 Processing chromosome scaffold839 INFO [2014-07-02 15:13:34,605] [Preprocessor.java:241] [main] Processing chromosome scaffold84 Processing chromosome scaffold84 INFO [2014-07-02 15:13:34,629] [Preprocessor.java:241] [main] Processing chromosome scaffold841 Processing chromosome scaffold841 INFO [2014-07-02 15:13:34,645] [Preprocessor.java:241] [main] Processing chromosome scaffold842 Processing chromosome scaffold842 INFO [2014-07-02 15:13:34,655] [Preprocessor.java:241] [main] Processing chromosome scaffold843 Processing chromosome scaffold843 INFO [2014-07-02 15:13:34,679] [Preprocessor.java:241] [main] Processing chromosome scaffold845 Processing chromosome scaffold845 INFO [2014-07-02 15:13:34,707] [Preprocessor.java:241] [main] Processing chromosome scaffold847 Processing chromosome scaffold847 INFO [2014-07-02 15:13:34,817] [Preprocessor.java:241] [main] Processing chromosome scaffold848 Processing chromosome scaffold848 INFO [2014-07-02 15:13:34,820] [Preprocessor.java:241] [main] Processing chromosome scaffold85 Processing chromosome scaffold85 INFO [2014-07-02 15:13:34,913] [Preprocessor.java:241] [main] Processing chromosome scaffold850 Processing chromosome scaffold850 INFO [2014-07-02 15:13:34,951] [Preprocessor.java:241] [main] Processing chromosome scaffold852 Processing chromosome scaffold852 INFO [2014-07-02 15:13:34,988] [Preprocessor.java:241] [main] Processing chromosome scaffold853 Processing chromosome scaffold853 INFO [2014-07-02 15:13:35,078] [Preprocessor.java:241] [main] Processing chromosome scaffold854 Processing chromosome scaffold854 INFO [2014-07-02 15:13:35,197] [Preprocessor.java:241] [main] Processing chromosome scaffold855 Processing chromosome scaffold855 INFO [2014-07-02 15:13:35,211] [Preprocessor.java:241] [main] Processing chromosome scaffold857 Processing chromosome scaffold857 INFO [2014-07-02 15:13:35,264] [Preprocessor.java:241] [main] Processing chromosome scaffold858 Processing chromosome scaffold858 INFO [2014-07-02 15:13:35,324] [Preprocessor.java:241] [main] Processing chromosome scaffold859 Processing chromosome scaffold859 INFO [2014-07-02 15:13:35,333] [Preprocessor.java:241] [main] Processing chromosome scaffold86 Processing chromosome scaffold86 INFO [2014-07-02 15:13:50,028] [Preprocessor.java:241] [main] Processing chromosome scaffold860 Processing chromosome scaffold860 INFO [2014-07-02 15:13:51,965] [Preprocessor.java:241] [main] Processing chromosome scaffold862 Processing chromosome scaffold862 INFO [2014-07-02 15:13:51,993] [Preprocessor.java:241] [main] Processing chromosome scaffold863 Processing chromosome scaffold863 INFO [2014-07-02 15:13:51,998] [Preprocessor.java:241] [main] Processing chromosome scaffold864 Processing chromosome scaffold864 INFO [2014-07-02 15:13:52,017] [Preprocessor.java:241] [main] Processing chromosome scaffold865 Processing chromosome scaffold865 INFO [2014-07-02 15:13:52,033] [Preprocessor.java:241] [main] Processing chromosome scaffold866 Processing chromosome scaffold866 INFO [2014-07-02 15:13:52,078] [Preprocessor.java:241] [main] Processing chromosome scaffold867 Processing chromosome scaffold867 INFO [2014-07-02 15:13:52,815] [Preprocessor.java:241] [main] Processing chromosome scaffold868 Processing chromosome scaffold868 INFO [2014-07-02 15:13:52,862] [Preprocessor.java:241] [main] Processing chromosome scaffold87 Processing chromosome scaffold87 INFO [2014-07-02 15:13:52,882] [Preprocessor.java:241] [main] Processing chromosome scaffold870 Processing chromosome scaffold870 INFO [2014-07-02 15:13:52,939] [Preprocessor.java:241] [main] Processing chromosome scaffold872 Processing chromosome scaffold872 INFO [2014-07-02 15:13:52,998] [Preprocessor.java:241] [main] Processing chromosome scaffold873 Processing chromosome scaffold873 INFO [2014-07-02 15:13:53,103] [Preprocessor.java:241] [main] Processing chromosome scaffold874 Processing chromosome scaffold874 INFO [2014-07-02 15:13:53,194] [Preprocessor.java:241] [main] Processing chromosome scaffold875 Processing chromosome scaffold875 INFO [2014-07-02 15:13:53,233] [Preprocessor.java:241] [main] Processing chromosome scaffold876 Processing chromosome scaffold876 INFO [2014-07-02 15:13:53,254] [Preprocessor.java:241] [main] Processing chromosome scaffold878 Processing chromosome scaffold878 INFO [2014-07-02 15:13:53,265] [Preprocessor.java:241] [main] Processing chromosome scaffold879 Processing chromosome scaffold879 INFO [2014-07-02 15:13:53,278] [Preprocessor.java:241] [main] Processing chromosome scaffold88 Processing chromosome scaffold88 INFO [2014-07-02 15:13:53,309] [Preprocessor.java:241] [main] Processing chromosome scaffold880 Processing chromosome scaffold880 INFO [2014-07-02 15:13:53,410] [Preprocessor.java:241] [main] Processing chromosome scaffold881 Processing chromosome scaffold881 INFO [2014-07-02 15:13:53,424] [Preprocessor.java:241] [main] Processing chromosome scaffold883 Processing chromosome scaffold883 INFO [2014-07-02 15:13:53,451] [Preprocessor.java:241] [main] Processing chromosome scaffold884 Processing chromosome scaffold884 INFO [2014-07-02 15:13:53,537] [Preprocessor.java:241] [main] Processing chromosome scaffold885 Processing chromosome scaffold885 INFO [2014-07-02 15:13:53,684] [Preprocessor.java:241] [main] Processing chromosome scaffold886 Processing chromosome scaffold886 INFO [2014-07-02 15:13:53,759] [Preprocessor.java:241] [main] Processing chromosome scaffold888 Processing chromosome scaffold888 INFO [2014-07-02 15:13:53,910] [Preprocessor.java:241] [main] Processing chromosome scaffold889 Processing chromosome scaffold889 INFO [2014-07-02 15:13:53,930] [Preprocessor.java:241] [main] Processing chromosome scaffold89 Processing chromosome scaffold89 INFO [2014-07-02 15:13:53,943] [Preprocessor.java:241] [main] Processing chromosome scaffold890 Processing chromosome scaffold890 .INFO [2014-07-02 15:13:58,239] [Preprocessor.java:241] [main] Processing chromosome scaffold891 Processing chromosome scaffold891 INFO [2014-07-02 15:13:58,977] [Preprocessor.java:241] [main] Processing chromosome scaffold892 Processing chromosome scaffold892 INFO [2014-07-02 15:13:59,033] [Preprocessor.java:241] [main] Processing chromosome scaffold893 Processing chromosome scaffold893 INFO [2014-07-02 15:13:59,077] [Preprocessor.java:241] [main] Processing chromosome scaffold894 Processing chromosome scaffold894 INFO [2014-07-02 15:13:59,114] [Preprocessor.java:241] [main] Processing chromosome scaffold895 Processing chromosome scaffold895 INFO [2014-07-02 15:13:59,208] [Preprocessor.java:241] [main] Processing chromosome scaffold896 Processing chromosome scaffold896 INFO [2014-07-02 15:13:59,310] [Preprocessor.java:241] [main] Processing chromosome scaffold898 Processing chromosome scaffold898 INFO [2014-07-02 15:13:59,340] [Preprocessor.java:241] [main] Processing chromosome scaffold899 Processing chromosome scaffold899 INFO [2014-07-02 15:13:59,385] [Preprocessor.java:241] [main] Processing chromosome scaffold9 Processing chromosome scaffold9 INFO [2014-07-02 15:13:59,425] [Preprocessor.java:241] [main] Processing chromosome scaffold90 Processing chromosome scaffold90 INFO [2014-07-02 15:13:59,454] [Preprocessor.java:241] [main] Processing chromosome scaffold900 Processing chromosome scaffold900 INFO [2014-07-02 15:13:59,461] [Preprocessor.java:241] [main] Processing chromosome scaffold901 Processing chromosome scaffold901 INFO [2014-07-02 15:13:59,468] [Preprocessor.java:241] [main] Processing chromosome scaffold903 Processing chromosome scaffold903 INFO [2014-07-02 15:13:59,493] [Preprocessor.java:241] [main] Processing chromosome scaffold904 Processing chromosome scaffold904 INFO [2014-07-02 15:13:59,502] [Preprocessor.java:241] [main] Processing chromosome scaffold905 Processing chromosome scaffold905 INFO [2014-07-02 15:13:59,522] [Preprocessor.java:241] [main] Processing chromosome scaffold907 Processing chromosome scaffold907 INFO [2014-07-02 15:13:59,529] [Preprocessor.java:241] [main] Processing chromosome scaffold908 Processing chromosome scaffold908 INFO [2014-07-02 15:13:59,603] [Preprocessor.java:241] [main] Processing chromosome scaffold91 Processing chromosome scaffold91 INFO [2014-07-02 15:13:59,637] [Preprocessor.java:241] [main] Processing chromosome scaffold910 Processing chromosome scaffold910 INFO [2014-07-02 15:13:59,669] [Preprocessor.java:241] [main] Processing chromosome scaffold911 Processing chromosome scaffold911 INFO [2014-07-02 15:13:59,713] [Preprocessor.java:241] [main] Processing chromosome scaffold912 Processing chromosome scaffold912 INFO [2014-07-02 15:13:59,719] [Preprocessor.java:241] [main] Processing chromosome scaffold913 Processing chromosome scaffold913 INFO [2014-07-02 15:13:59,739] [Preprocessor.java:241] [main] Processing chromosome scaffold914 Processing chromosome scaffold914 INFO [2014-07-02 15:13:59,887] [Preprocessor.java:241] [main] Processing chromosome scaffold915 Processing chromosome scaffold915 INFO [2014-07-02 15:13:59,904] [Preprocessor.java:241] [main] Processing chromosome scaffold916 Processing chromosome scaffold916 INFO [2014-07-02 15:13:59,978] [Preprocessor.java:241] [main] Processing chromosome scaffold917 Processing chromosome scaffold917 INFO [2014-07-02 15:14:00,059] [Preprocessor.java:241] [main] Processing chromosome scaffold919 Processing chromosome scaffold919 INFO [2014-07-02 15:14:00,069] [Preprocessor.java:241] [main] Processing chromosome scaffold922 Processing chromosome scaffold922 INFO [2014-07-02 15:14:00,120] [Preprocessor.java:241] [main] Processing chromosome scaffold923 Processing chromosome scaffold923 INFO [2014-07-02 15:14:00,146] [Preprocessor.java:241] [main] Processing chromosome scaffold924 Processing chromosome scaffold924 INFO [2014-07-02 15:14:00,168] [Preprocessor.java:241] [main] Processing chromosome scaffold925 Processing chromosome scaffold925 INFO [2014-07-02 15:14:00,214] [Preprocessor.java:241] [main] Processing chromosome scaffold926 Processing chromosome scaffold926 INFO [2014-07-02 15:14:00,239] [Preprocessor.java:241] [main] Processing chromosome scaffold928 Processing chromosome scaffold928 INFO [2014-07-02 15:14:00,276] [Preprocessor.java:241] [main] Processing chromosome scaffold929 Processing chromosome scaffold929 INFO [2014-07-02 15:14:00,354] [Preprocessor.java:241] [main] Processing chromosome scaffold93 Processing chromosome scaffold93 INFO [2014-07-02 15:14:00,393] [Preprocessor.java:241] [main] Processing chromosome scaffold930 Processing chromosome scaffold930 INFO [2014-07-02 15:14:00,455] [Preprocessor.java:241] [main] Processing chromosome scaffold931 Processing chromosome scaffold931 INFO [2014-07-02 15:14:00,472] [Preprocessor.java:241] [main] Processing chromosome scaffold932 Processing chromosome scaffold932 INFO [2014-07-02 15:14:00,529] [Preprocessor.java:241] [main] Processing chromosome scaffold933 Processing chromosome scaffold933 INFO [2014-07-02 15:14:00,636] [Preprocessor.java:241] [main] Processing chromosome scaffold934 Processing chromosome scaffold934 INFO [2014-07-02 15:14:04,588] [Preprocessor.java:241] [main] Processing chromosome scaffold935 Processing chromosome scaffold935 INFO [2014-07-02 15:14:04,607] [Preprocessor.java:241] [main] Processing chromosome scaffold937 Processing chromosome scaffold937 INFO [2014-07-02 15:14:04,619] [Preprocessor.java:241] [main] Processing chromosome scaffold939 Processing chromosome scaffold939 INFO [2014-07-02 15:14:04,675] [Preprocessor.java:241] [main] Processing chromosome scaffold94 Processing chromosome scaffold94 INFO [2014-07-02 15:14:04,742] [Preprocessor.java:241] [main] Processing chromosome scaffold940 Processing chromosome scaffold940 INFO [2014-07-02 15:14:04,771] [Preprocessor.java:241] [main] Processing chromosome scaffold941 Processing chromosome scaffold941 INFO [2014-07-02 15:14:04,796] [Preprocessor.java:241] [main] Processing chromosome scaffold942 Processing chromosome scaffold942 INFO [2014-07-02 15:14:09,958] [Preprocessor.java:241] [main] Processing chromosome scaffold943 Processing chromosome scaffold943 INFO [2014-07-02 15:14:09,977] [Preprocessor.java:241] [main] Processing chromosome scaffold944 Processing chromosome scaffold944 INFO [2014-07-02 15:14:10,010] [Preprocessor.java:241] [main] Processing chromosome scaffold946 Processing chromosome scaffold946 INFO [2014-07-02 15:14:10,019] [Preprocessor.java:241] [main] Processing chromosome scaffold947 Processing chromosome scaffold947 INFO [2014-07-02 15:14:10,033] [Preprocessor.java:241] [main] Processing chromosome scaffold948 Processing chromosome scaffold948 INFO [2014-07-02 15:14:10,140] [Preprocessor.java:241] [main] Processing chromosome scaffold949 Processing chromosome scaffold949 INFO [2014-07-02 15:14:10,157] [Preprocessor.java:241] [main] Processing chromosome scaffold950 Processing chromosome scaffold950 INFO [2014-07-02 15:14:12,087] [Preprocessor.java:241] [main] Processing chromosome scaffold951 Processing chromosome scaffold951 INFO [2014-07-02 15:14:12,155] [Preprocessor.java:241] [main] Processing chromosome scaffold952 Processing chromosome scaffold952 INFO [2014-07-02 15:14:12,182] [Preprocessor.java:241] [main] Processing chromosome scaffold953 Processing chromosome scaffold953 INFO [2014-07-02 15:14:12,204] [Preprocessor.java:241] [main] Processing chromosome scaffold954 Processing chromosome scaffold954 INFO [2014-07-02 15:14:12,242] [Preprocessor.java:241] [main] Processing chromosome scaffold955 Processing chromosome scaffold955 INFO [2014-07-02 15:14:12,349] [Preprocessor.java:241] [main] Processing chromosome scaffold959 Processing chromosome scaffold959 INFO [2014-07-02 15:14:12,399] [Preprocessor.java:241] [main] Processing chromosome scaffold96 Processing chromosome scaffold96 INFO [2014-07-02 15:14:12,430] [Preprocessor.java:241] [main] Processing chromosome scaffold960 Processing chromosome scaffold960 INFO [2014-07-02 15:14:12,466] [Preprocessor.java:241] [main] Processing chromosome scaffold961 Processing chromosome scaffold961 INFO [2014-07-02 15:14:12,473] [Preprocessor.java:241] [main] Processing chromosome scaffold962 Processing chromosome scaffold962 INFO [2014-07-02 15:14:12,616] [Preprocessor.java:241] [main] Processing chromosome scaffold963 Processing chromosome scaffold963 INFO [2014-07-02 15:14:12,669] [Preprocessor.java:241] [main] Processing chromosome scaffold964 Processing chromosome scaffold964 INFO [2014-07-02 15:14:12,708] [Preprocessor.java:241] [main] Processing chromosome scaffold966 Processing chromosome scaffold966 INFO [2014-07-02 15:14:12,718] [Preprocessor.java:241] [main] Processing chromosome scaffold967 Processing chromosome scaffold967 INFO [2014-07-02 15:14:12,756] [Preprocessor.java:241] [main] Processing chromosome scaffold968 Processing chromosome scaffold968 INFO [2014-07-02 15:14:12,794] [Preprocessor.java:241] [main] Processing chromosome scaffold969 Processing chromosome scaffold969 INFO [2014-07-02 15:14:12,842] [Preprocessor.java:241] [main] Processing chromosome scaffold97 Processing chromosome scaffold97 INFO [2014-07-02 15:14:12,889] [Preprocessor.java:241] [main] Processing chromosome scaffold970 Processing chromosome scaffold970 INFO [2014-07-02 15:14:12,908] [Preprocessor.java:241] [main] Processing chromosome scaffold971 Processing chromosome scaffold971 INFO [2014-07-02 15:14:12,949] [Preprocessor.java:241] [main] Processing chromosome scaffold973 Processing chromosome scaffold973 INFO [2014-07-02 15:14:19,322] [Preprocessor.java:241] [main] Processing chromosome scaffold974 Processing chromosome scaffold974 INFO [2014-07-02 15:14:19,344] [Preprocessor.java:241] [main] Processing chromosome scaffold975 Processing chromosome scaffold975 INFO [2014-07-02 15:14:19,408] [Preprocessor.java:241] [main] Processing chromosome scaffold976 Processing chromosome scaffold976 INFO [2014-07-02 15:14:19,436] [Preprocessor.java:241] [main] Processing chromosome scaffold977 Processing chromosome scaffold977 .INFO [2014-07-02 15:14:19,493] [Preprocessor.java:241] [main] Processing chromosome scaffold979 Processing chromosome scaffold979 INFO [2014-07-02 15:14:19,498] [Preprocessor.java:241] [main] Processing chromosome scaffold98 Processing chromosome scaffold98 INFO [2014-07-02 15:14:19,539] [Preprocessor.java:241] [main] Processing chromosome scaffold980 Processing chromosome scaffold980 INFO [2014-07-02 15:14:19,669] [Preprocessor.java:241] [main] Processing chromosome scaffold982 Processing chromosome scaffold982 INFO [2014-07-02 15:14:19,681] [Preprocessor.java:241] [main] Processing chromosome scaffold983 Processing chromosome scaffold983 INFO [2014-07-02 15:14:19,753] [Preprocessor.java:241] [main] Processing chromosome scaffold984 Processing chromosome scaffold984 INFO [2014-07-02 15:14:19,778] [Preprocessor.java:241] [main] Processing chromosome scaffold985 Processing chromosome scaffold985 INFO [2014-07-02 15:14:19,833] [Preprocessor.java:241] [main] Processing chromosome scaffold986 Processing chromosome scaffold986 INFO [2014-07-02 15:14:19,860] [Preprocessor.java:241] [main] Processing chromosome scaffold987 Processing chromosome scaffold987 INFO [2014-07-02 15:14:19,946] [Preprocessor.java:241] [main] Processing chromosome scaffold988 Processing chromosome scaffold988 INFO [2014-07-02 15:14:19,955] [Preprocessor.java:241] [main] Processing chromosome scaffold99 Processing chromosome scaffold99 INFO [2014-07-02 15:14:20,019] [Preprocessor.java:241] [main] Processing chromosome scaffold990 Processing chromosome scaffold990 INFO [2014-07-02 15:14:20,032] [Preprocessor.java:241] [main] Processing chromosome scaffold991 Processing chromosome scaffold991 INFO [2014-07-02 15:14:20,041] [Preprocessor.java:241] [main] Processing chromosome scaffold992 Processing chromosome scaffold992 INFO [2014-07-02 15:14:20,086] [Preprocessor.java:241] [main] Processing chromosome scaffold993 Processing chromosome scaffold993 INFO [2014-07-02 15:14:20,165] [Preprocessor.java:241] [main] Processing chromosome scaffold994 Processing chromosome scaffold994 INFO [2014-07-02 15:14:20,177] [Preprocessor.java:241] [main] Processing chromosome scaffold995 Processing chromosome scaffold995 INFO [2014-07-02 15:14:20,193] [Preprocessor.java:241] [main] Processing chromosome scaffold997 Processing chromosome scaffold997 INFO [2014-07-02 15:14:20,220] [Preprocessor.java:241] [main] Processing chromosome scaffold998 Processing chromosome scaffold998 INFO [2014-07-02 15:14:20,299] [Preprocessor.java:241] [main] Processing chromosome scaffold999 Processing chromosome scaffold999 INFO [2014-07-02 15:14:54,317] [TDFWriter.java:304] [main] Group idx: 1 Group idx: 1 100.0% Done ERROR: putUtil: put error for /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_Man1-2014-07-02-08-36-42.069/zMan1_th_genomecov.bedgraph.tdf, status = -312000 status = -312000 OVERWRITE_WITHOUT_FORCE_FLAG
!samtools sort zMan1_tophat.bam sorted
[bam_sort_core] merging from 16 files...
Where are probes on genome?
!head /Volumes/web/bivalvia/array\ design/OID40453_design_deliverables/OID40453_probe_locations.gff
scaffold1 NGS OID40453_probe_locations 52347 52396 1 . . color=000000 scaffold1 NGS OID40453_probe_locations 52472 52521 1 . . color=000000 scaffold1 NGS OID40453_probe_locations 52597 52649 1 . . color=000000 scaffold1 NGS OID40453_probe_locations 52741 52797 1 . . color=000000 scaffold1 NGS OID40453_probe_locations 52851 52915 1 . . color=000000 scaffold1 NGS OID40453_probe_locations 52996 53056 1 . . color=000000 scaffold1 NGS OID40453_probe_locations 53101 53152 1 . . color=000000 scaffold1 NGS OID40453_probe_locations 53241 53290 2 . . color=000000 scaffold1 NGS OID40453_probe_locations 53351 53405 1 . . color=000000 scaffold1 NGS OID40453_probe_locations 53476 53534 1 . . color=000000
!wc -l /Volumes/web/bivalvia/array\ design/OID40453_design_deliverables/OID40453_probe_locations.gff
697752 /Volumes/web/bivalvia/array design/OID40453_design_deliverables/OID40453_probe_locations.gff
!intersectbed -c -a /Volumes/web/bivalvia/array\ design/OID40453_design_deliverables/OID40453_probe_locations.gff -b /Volumes/web/trilobite/Crassostrea_gigas_v9_tracks/Cgigas_v9_gene.gff > /Volumes/web/cnidarian/HS_array_disc1.tab
!head /Volumes/web/cnidarian/HS_array_disc1.tab
scaffold1 NGS OID40453_probe_locations 52347 52396 1 . . color=000000 2 scaffold1 NGS OID40453_probe_locations 52472 52521 1 . . color=000000 2 scaffold1 NGS OID40453_probe_locations 52597 52649 1 . . color=000000 2 scaffold1 NGS OID40453_probe_locations 52741 52797 1 . . color=000000 2 scaffold1 NGS OID40453_probe_locations 52851 52915 1 . . color=000000 2 scaffold1 NGS OID40453_probe_locations 52996 53056 1 . . color=000000 2 scaffold1 NGS OID40453_probe_locations 53101 53152 1 . . color=000000 2 scaffold1 NGS OID40453_probe_locations 53241 53290 2 . . color=000000 2 scaffold1 NGS OID40453_probe_locations 53351 53405 1 . . color=000000 2 scaffold1 NGS OID40453_probe_locations 53476 53534 1 . . color=000000 2
!cut -f10 /Volumes/web/cnidarian/HS_array_disc1.tab | sort | uniq -c
77708 0 594808 1 25234 2 2 3
pwd
u'/Volumes/web/cnidarian'
/bin/sh: -c: line 0: syntax error near unexpected token `<' /bin/sh: -c: line 0: `samtools sort </Volumes/web/cnidarian/zMan1_tophat.bam> </Volumes/web/cnidarian/zMan1_tophat.sorted.bam> '
scaffold 100
scaff old1016