import pandas as pd
from matplotlib import rcParams
pd.set_option('display.max_rows', 500)
pd.options.display.max_colwidth = 200
rcParams['figure.figsize'] = 16, 12
rcParams['figure.dpi'] = 100
rcParams['savefig.dpi'] = 100
mgcov1 = pd.read_csv("NewMock1/out_31/mummer/metagenome-coverage.1000.tsv", sep="\t").sort("genome").reset_index(drop=True)
mgcov1
genome | length | contig_cov | contig_cov_percentage | |
---|---|---|---|---|
0 | gi|116334879|ref|NC_008499.1|_Lactobacillus_brevis_ATCC_367_plasmid_2,_complete_sequence | 2340228 | 2310762 | 98.74 |
1 | gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome | 5163189 | 4996950 | 96.78 |
2 | gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome | 5594477 | 1292593 | 23.10 |
3 | gi|187734516|ref|NC_010655.1|_Akkermansia_muciniphila_ATCC_BAA-835_chromosome,_complete_genome | 2664102 | 2639134 | 99.06 |
4 | gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome | 5069678 | 1101747 | 21.73 |
5 | gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome | 3449685 | 3301992 | 95.72 |
6 | gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence | 6293399 | 6126397 | 97.35 |
7 | gi|312132275|ref|NC_014656.1|_Bifidobacterium_longum_subsp._longum_BBMN68_chromosome,_complete_genome | 2265943 | 2154030 | 95.06 |
8 | gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome | 4482087 | 4336819 | 96.76 |
9 | gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome | 3998906 | 3750249 | 93.78 |
10 | gi|324959701|ref|NC_015166.1|_Bacteroides_salanitronis_DSM_18170_plasmid_pBACSA03,_complete_sequence | 4308663 | 4041904 | 93.81 |
11 | gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome | 3592125 | 3029300 | 84.33 |
12 | gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome | 5373121 | 5206469 | 96.90 |
13 | gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome | 4464699 | 4148106 | 92.91 |
14 | gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence | 3062505 | 2959733 | 96.64 |
15 | gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome | 5437407 | 1247026 | 22.93 |
16 | gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome | 1667841 | 1642153 | 98.46 |
17 | gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome | 3248271 | 2997802 | 92.29 |
18 | gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome | 4641652 | 2833820 | 61.05 |
19 | gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome | 5179971 | 1248460 | 24.10 |
20 | metagenome | 82297949 | 61365446 | 74.56 |
21 rows × 4 columns
mgcov2 = pd.read_csv("NewMock2/out_31/mummer/metagenome-coverage.1000.tsv", sep="\t").sort('genome').reset_index(drop=True)
mgcov2
genome | length | contig_cov | contig_cov_percentage | |
---|---|---|---|---|
0 | gi|10954629|ref|NC_001399.1|_Ralstonia_solanacearum_M4S_plasmid_pJTPS1,_complete_sequence | 7768018 | 7690464 | 99.00 |
1 | gi|110801439|ref|NC_008262.1|_Clostridium_perfringens_SM101_chromosome,_complete_genome | 2960088 | 1358902 | 45.91 |
2 | gi|119025018|ref|NC_008618.1|_Bifidobacterium_adolescentis_ATCC_15703_chromosome,_complete_genome | 2089644 | 2056718 | 98.42 |
3 | gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome | 5163189 | 5028434 | 97.39 |
4 | gi|150006674|ref|NC_009615.1|_Parabacteroides_distasonis_ATCC_8503_chromosome,_complete_genome | 4811379 | 3068816 | 63.78 |
5 | gi|150014892|ref|NC_009617.1|_Clostridium_beijerinckii_NCIMB_8052_chromosome,_complete_genome | 6000632 | 171482 | 2.86 |
6 | gi|152979768|ref|NC_009659.1|_Janthinobacterium_sp._Marseille_chromosome,_complete_genome | 4110251 | 3861589 | 93.95 |
7 | gi|160878162|ref|NC_010001.1|_Clostridium_phytofermentans_ISDg_chromosome,_complete_genome | 4847594 | 4008088 | 82.68 |
8 | gi|162446888|ref|NC_010163.1|_Acholeplasma_laidlawii_PG-8A_chromosome,_complete_genome | 1496992 | 1492676 | 99.71 |
9 | gi|170780462|ref|NC_010407.1|_Clavibacter_michiganensis_subsp._sepedonicus_chromosome,_complete_genome | 3403786 | 1837523 | 53.98 |
10 | gi|187734516|ref|NC_010655.1|_Akkermansia_muciniphila_ATCC_BAA-835_chromosome,_complete_genome | 2664102 | 2639751 | 99.09 |
11 | gi|188993864|ref|NC_010729.1|_Porphyromonas_gingivalis_ATCC_33277,_complete_genome | 2354886 | 498984 | 21.19 |
12 | gi|194246403|ref|NC_011047.1|_Candidatus_Phytoplasma_mali_chromosome,_complete_genome | 601943 | 519575 | 86.32 |
13 | gi|19703352|ref|NC_003454.1|_Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586_chromosome,_complete_genome | 2174499 | 2114148 | 97.22 |
14 | gi|220927459|ref|NC_011898.1|_Clostridium_cellulolyticum_H10_chromosome,_complete_genome | 4068724 | 3935455 | 96.72 |
15 | gi|226309587|ref|NC_012491.1|_Brevibacillus_brevis_NBRC_100599,_complete_genome | 6296436 | 5224086 | 82.97 |
16 | gi|237806776|ref|NC_012691.1|_Tolumonas_auensis_DSM_9187_chromosome,_complete_genome | 3471292 | 3409342 | 98.22 |
17 | gi|238915976|ref|NC_012778.1|_Eubacterium_eligens_ATCC_27750_chromosome,_complete_genome | 2831389 | 2765263 | 97.66 |
18 | gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome | 3449685 | 1786756 | 51.79 |
19 | gi|255529916|ref|NC_013061.1|_Pedobacter_heparinus_DSM_2366_chromosome,_complete_genome | 5167383 | 4276092 | 82.75 |
20 | gi|257074450|ref|NC_013190.1|_Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1_plasmid_pAph02,_complete_sequence | 5306133 | 5085052 | 95.83 |
21 | gi|258513366|ref|NC_013216.1|_Desulfotomaculum_acetoxidans_DSM_771_chromosome,_complete_genome | 4545624 | 262225 | 5.77 |
22 | gi|260685375|ref|NC_013316.1|_Clostridium_difficile_R20291_chromosome,_complete_genome | 4191139 | 3874883 | 92.45 |
23 | gi|269797069|ref|NC_013520.1|_Veillonella_parvula_DSM_2008_chromosome,_complete_genome | 2132142 | 2056013 | 96.43 |
24 | gi|284047386|ref|NC_013740.1|_Acidaminococcus_fermentans_DSM_20731_chromosome,_complete_genome | 2329769 | 2281398 | 97.92 |
25 | gi|291464753|ref|NC_007971.2|_Cupriavidus_metallidurans_CH34_plasmid_pMOL30,_complete_sequence | 6913352 | 13617 | 0.20 |
26 | gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence | 6293399 | 5002147 | 79.48 |
27 | gi|300309346|ref|NC_014323.1|_Herbaspirillum_seropedicae_SmR1_chromosome,_complete_genome | 5513887 | 5078335 | 92.10 |
28 | gi|302344773|ref|NC_014370.1|_Prevotella_melaninogenica_ATCC_25845_chromosome_I,_complete_sequence | 3168282 | 3138852 | 99.07 |
29 | gi|302381116|ref|NC_014375.1|_Brevundimonas_subvibrioides_ATCC_15264_chromosome,_complete_genome | 3445263 | 3437602 | 99.78 |
30 | gi|302384444|ref|NC_014376.1|_Clostridium_saccharolyticum_WM1_chromosome,_complete_genome | 4662871 | 4610775 | 98.88 |
31 | gi|302872922|ref|NC_014393.1|_Clostridium_cellulovorans_743B_chromosome,_complete_genome | 5262222 | 4307359 | 81.85 |
32 | gi|310657316|ref|NC_014614.1|_[Clostridium]_sticklandii,_complete_genome | 2715461 | 2276132 | 83.82 |
33 | gi|313202490|ref|NC_014734.1|_Paludibacter_propionicigenes_WB4_chromosome,_complete_genome | 3685504 | 3479023 | 94.40 |
34 | gi|315121750|ref|NC_014774.1|_Candidatus_Liberibacter_solanacearum_CLso-ZC1_chromosome,_complete_genome | 1258277 | 1219186 | 96.89 |
35 | gi|315499382|ref|NC_014817.1|_Asticcacaulis_excentricus_CB_48_chromosome_2,_complete_sequence | 4308776 | 4275201 | 99.22 |
36 | gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome | 4482087 | 904454 | 20.18 |
37 | gi|317131008|ref|NC_014828.1|_Ethanoligenens_harbinense_YUAN-3_chromosome,_complete_genome | 3008576 | 2894685 | 96.21 |
38 | gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome | 3998906 | 3284908 | 82.15 |
39 | gi|325102757|ref|NC_015177.1|_Pedobacter_saltans_DSM_12145_chromosome,_complete_genome | 4635236 | 4604639 | 99.34 |
40 | gi|325278757|ref|NC_015160.1|_Odoribacter_splanchnicus_DSM_20712_chromosome,_complete_genome | 4392288 | 4311799 | 98.17 |
41 | gi|326797444|ref|NC_015277.1|_Sphingobacterium_sp._21_chromosome,_complete_genome | 6226409 | 2079082 | 33.39 |
42 | gi|327312315|ref|NC_015311.1|_Prevotella_denticola_F0289_chromosome,_complete_genome | 2937589 | 2797059 | 95.22 |
43 | gi|328954613|ref|NC_015389.1|_Coriobacterium_glomerans_PW2_chromosome,_complete_genome | 2115681 | 2069524 | 97.82 |
44 | gi|330837866|ref|NC_015437.1|_Selenomonas_sputigena_ATCC_35185_chromosome,_complete_genome | 2568361 | 2513393 | 97.86 |
45 | gi|331703020|ref|NC_015431.1|_Mycoplasma_mycoides_subsp._capri_LC_str._95010,_complete_genome | 1155838 | 1100319 | 95.20 |
46 | gi|332159624|ref|NC_015224.1|_Yersinia_enterocolitica_subsp._palearctica_105.5R(r)_chromosome,_complete_genome | 4621808 | 4499124 | 97.35 |
47 | gi|339441064|ref|NC_015737.1|_Clostridium_sp._SY8519,_complete_genome | 2835737 | 2765919 | 97.54 |
48 | gi|340620745|ref|NC_015845.1|_Enterococcus_hirae_ATCC_9790_plasmid_pTG9790,_complete_sequence | 2856406 | 2817280 | 98.63 |
49 | gi|342162671|ref|NC_015875.1|_Streptococcus_pseudopneumoniae_IS7493_chromosome,_complete_genome | 2195458 | 1925761 | 87.72 |
50 | gi|34539880|ref|NC_002950.2|_Porphyromonas_gingivalis_W83_chromosome,_complete_genome | 2343476 | 2113091 | 90.17 |
51 | gi|345428590|ref|NC_015964.1|_Haemophilus_parainfluenzae_T3T1,_complete_genome | 2086875 | 2061145 | 98.77 |
52 | gi|348025247|ref|NC_015873.1|_Megasphaera_elsdenii_DSM_20460,_complete_genome | 2464883 | 2387153 | 96.85 |
53 | gi|349703191|ref|NC_016046.1|_Oscillibacter_valericigenes_Sjm18-20_plasmid_pOBV01,_complete_sequence | 4470622 | 4222733 | 94.46 |
54 | gi|352516173|ref|NC_016052.1|_Tetragenococcus_halophilus_NBRC_12172,_complete_genome | 2562720 | 2468156 | 96.31 |
55 | gi|352683411|ref|NC_016077.1|_Acidaminococcus_intestini_RyC-MR95_chromosome,_complete_genome | 2487765 | 2433673 | 97.83 |
56 | gi|374294493|ref|NC_016627.1|_Clostridium_clariflavum_DSM_19732_chromosome,_complete_genome | 4897678 | 4618140 | 94.29 |
57 | gi|374307319|ref|NC_016630.1|_Filifactor_alocis_ATCC_35896_chromosome,_complete_genome | 1931012 | 1886370 | 97.69 |
58 | gi|375253814|ref|NC_016610.1|_Tannerella_forsythia_ATCC_43037_chromosome,_complete_genome | 3405521 | 3330640 | 97.80 |
59 | gi|376259380|ref|NC_016791.1|_Clostridium_sp._BNL1100_chromosome,_complete_genome | 4613747 | 4520785 | 97.99 |
60 | gi|383760671|ref|NC_017077.1|_Selenomonas_ruminantium_subsp._lactilytica_TAM6421_plasmid_pSRC7,_complete_sequence | 3631933 | 8412 | 0.23 |
61 | gi|385777386|ref|NC_017304.1|_Clostridium_thermocellum_DSM_1313_chromosome,_complete_genome | 3561619 | 1714294 | 48.13 |
62 | gi|386085705|ref|NC_017563.1|_Streptococcus_thermophilus_ND03_chromosome,_complete_genome | 1831949 | 1784099 | 97.39 |
63 | gi|386348020|ref|NC_017584.1|_Rhodospirillum_rubrum_F11_chromosome,_complete_genome | 4352814 | 4133213 | 94.95 |
64 | gi|387132089|ref|NC_017861.1|_Prevotella_intermedia_17_chromosome_chromosome_II,_complete_sequence | 2699437 | 2227760 | 82.53 |
65 | gi|387816237|ref|NC_017299.1|_Clostridium_botulinum_H04402_065,_complete_genome | 3919740 | 3874809 | 98.85 |
66 | gi|387878539|ref|NC_017905.1|_Streptococcus_parasanguinis_FW213_chromosome,_complete_genome | 2171601 | 2074478 | 95.53 |
67 | gi|390945347|ref|NC_018011.1|_Alistipes_finegoldii_DSM_17242_chromosome,_complete_genome | 3734239 | 3381390 | 90.55 |
68 | gi|407472532|ref|NC_018664.1|_Clostridium_acidurici_9a_chromosome,_complete_genome | 3108248 | 3068452 | 98.72 |
69 | gi|407702824|ref|NC_018689.1|_Bacillus_thuringiensis_MC28_plasmid_pMC429,_complete_sequence | 6694533 | 6248869 | 93.34 |
70 | gi|409101469|ref|NC_018867.1|_Dehalobacter_sp._CF_chromosome,_complete_genome | 3092048 | 2910039 | 94.11 |
71 | gi|427740400|ref|NC_019679.1|_Rivularia_sp._PCC_7116_plasmid_pRIV7116.01,_complete_sequence | 8728773 | 120850 | 1.38 |
72 | gi|431792069|ref|NC_019903.1|_Desulfitobacterium_dichloroeliminans_LMG_P-21439_chromosome,_complete_genome | 3624449 | 3527526 | 97.33 |
73 | gi|431795410|ref|NC_019904.1|_Echinicola_vietnamensis_DSM_17526_chromosome,_complete_genome | 5608040 | 5533721 | 98.67 |
74 | gi|434408147|ref|NC_019758.1|_Cylindrospermum_stagnale_PCC_7417_plasmid_pCYLST.03,_complete_sequence | 7610389 | 7380883 | 96.98 |
75 | gi|472465460|ref|NC_020887.1|_Clostridium_stercorarium_subsp._stercorarium_DSM_8532,_complete_genome | 2969999 | 188471 | 6.35 |
76 | gi|479133135|ref|NC_017175.1|_Clostridium_difficile_M68,_complete_genome | 4306425 | 59064 | 1.37 |
77 | gi|479136967|ref|NC_021009.1|_Coprococcus_catus_GD/7_draft_genome | 3463414 | 2888119 | 83.39 |
78 | gi|479146200|ref|NC_021012.1|_Roseburia_intestinalis_XB6B4_draft_genome | 4164855 | 3906856 | 93.81 |
79 | gi|479150083|ref|NC_021013.1|_Ruminococcus_bromii_L2-63_draft_genome | 2231037 | 2048847 | 91.83 |
80 | gi|479152295|ref|NC_021014.1|_Ruminococcus_sp._SR1/5_draft_genome | 3511612 | 3380954 | 96.28 |
81 | gi|479155735|ref|NC_021015.1|_Ruminococcus_torques_L2-14_draft_genome | 3277778 | 3076697 | 93.87 |
82 | gi|479158859|ref|NC_021016.1|_Butyrate-producing_bacterium_SSC/2,_complete_genome | 3050979 | 1715178 | 56.22 |
83 | gi|479166807|ref|NC_021018.1|_Coprococcus_sp._ART55/1_draft_genome | 2888039 | 2849574 | 98.67 |
84 | gi|479169109|ref|NC_021019.1|_Eubacterium_cylindroides_T2-87_draft_genome | 1661181 | 1591416 | 95.80 |
85 | gi|479170689|ref|NC_021020.1|_Faecalibacterium_prausnitzii_SL3/3_draft_genome | 3165875 | 2762673 | 87.26 |
86 | gi|479176048|ref|NC_021022.1|_Ruminococcus_obeum_A2-162_draft_genome | 3692226 | 3416047 | 92.52 |
87 | gi|479185170|ref|NC_021030.1|_Alistipes_shahii_WAL_8301_draft_genome | 3649672 | 2945983 | 80.72 |
88 | gi|479199283|ref|NC_021039.1|_Ruminococcus_champanellensis_18P13,_complete_genome | 2513381 | 2498858 | 99.42 |
89 | gi|479210985|ref|NC_021043.1|_Eubacterium_siraeum_V10Sc8a_draft_genome | 2779231 | 2465524 | 88.71 |
90 | gi|479213596|ref|NC_021044.1|_Eubacterium_rectale_M104/1_draft_genome | 3566572 | 2915819 | 81.75 |
91 | gi|479336697|ref|NC_021047.1|_Clostridium_cf._saccharolyticum_K10,_complete_genome | 3608868 | 3548755 | 98.33 |
92 | gi|482887500|ref|NC_021083.1|_Mycoplasma_putrefaciens_Mput9231,_complete_genome | 859987 | 827027 | 96.17 |
93 | gi|50364815|ref|NC_006055.1|_Mesoplasma_florum_L1_chromosome,_complete_genome | 793224 | 787015 | 99.22 |
94 | gi|507383177|ref|NC_021284.1|_Spiroplasma_syrphidicola_EA-1,_complete_genome | 1107344 | 1083042 | 97.81 |
95 | gi|509152352|ref|NC_021354.1|_Erysipelothrix_rhusiopathiae_SY1027,_complete_genome | 1752910 | 1739368 | 99.23 |
96 | gi|51593942|ref|NC_006154.1|_Yersinia_pseudotuberculosis_IP_32953_plasmid_pYptb32953,_complete_sequence | 4840898 | 4511036 | 93.19 |
97 | gi|52421214|ref|NC_006297.1|_Bacteroides_fragilis_YCH46_plasmid_pBFY46,_complete_sequence | 5310990 | 5218629 | 98.26 |
98 | gi|525905724|ref|NC_021832.1|_Spiroplasma_taiwanense_CT-1_plasmid,_complete_sequence | 1086278 | 743208 | 68.42 |
99 | gi|525908085|ref|NC_021833.1|_Spiroplasma_diminutum_CUAS-1,_complete_genome | 945296 | 508040 | 53.74 |
100 | gi|56899872|ref|NC_006578.1|_Bacillus_thuringiensis_serovar_konkukian_str._97-27_plasmid_pBT9727,_complete_sequence | 5314793 | 2948870 | 55.48 |
101 | gi|58036264|ref|NC_004307.2|_Bifidobacterium_longum_NCC2705_chromosome,_complete_genome | 2260266 | 2230122 | 98.67 |
102 | gi|67078390|ref|NC_007107.1|_Bacillus_cereus_E33L_plasmid_pE33L9,_complete_sequence | 5843235 | 3937991 | 67.39 |
103 | gi|72384244|ref|NC_007337.1|_Ralstonia_eutropha_JMP134_plasmid_1,_complete_sequence | 7255290 | 7215665 | 99.45 |
104 | gi|83588874|ref|NC_007644.1|_Moorella_thermoacetica_ATCC_39073_chromosome,_complete_genome | 2628784 | 2562994 | 97.50 |
105 | gi|94972398|ref|NC_008014.1|_Lawsonia_intracellularis_PHE/MN1-00_plasmid_3,_complete_sequence | 1719014 | 1698317 | 98.80 |
106 | metagenome | 381347957 | 303010730 | 79.46 |
107 rows × 4 columns
mgcov2b = pd.read_csv("NewMock2b/out_41/mummer/metagenome-coverage.1000.tsv", sep="\t").sort('genome').reset_index(drop=True)
mgcov2b
genome | length | contig_cov | contig_cov_percentage | |
---|---|---|---|---|
0 | gi|10954629|ref|NC_001399.1|_Ralstonia_solanacearum_M4S_plasmid_pJTPS1,_complete_sequence | 7768018 | 5627926 | 72.45 |
1 | gi|110801439|ref|NC_008262.1|_Clostridium_perfringens_SM101_chromosome,_complete_genome | 2960088 | 2876313 | 97.17 |
2 | gi|119025018|ref|NC_008618.1|_Bifidobacterium_adolescentis_ATCC_15703_chromosome,_complete_genome | 2089644 | 2061919 | 98.67 |
3 | gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome | 5163189 | 4956636 | 96.00 |
4 | gi|150006674|ref|NC_009615.1|_Parabacteroides_distasonis_ATCC_8503_chromosome,_complete_genome | 4811379 | 4642034 | 96.48 |
5 | gi|150014892|ref|NC_009617.1|_Clostridium_beijerinckii_NCIMB_8052_chromosome,_complete_genome | 6000632 | 5576899 | 92.94 |
6 | gi|152979768|ref|NC_009659.1|_Janthinobacterium_sp._Marseille_chromosome,_complete_genome | 4110251 | 4011834 | 97.61 |
7 | gi|160878162|ref|NC_010001.1|_Clostridium_phytofermentans_ISDg_chromosome,_complete_genome | 4847594 | 4768343 | 98.37 |
8 | gi|162446888|ref|NC_010163.1|_Acholeplasma_laidlawii_PG-8A_chromosome,_complete_genome | 1496992 | 1492217 | 99.68 |
9 | gi|170780462|ref|NC_010407.1|_Clavibacter_michiganensis_subsp._sepedonicus_chromosome,_complete_genome | 3403786 | 3316401 | 97.43 |
10 | gi|187734516|ref|NC_010655.1|_Akkermansia_muciniphila_ATCC_BAA-835_chromosome,_complete_genome | 2664102 | 2637852 | 99.01 |
11 | gi|188993864|ref|NC_010729.1|_Porphyromonas_gingivalis_ATCC_33277,_complete_genome | 2354886 | 2224744 | 94.47 |
12 | gi|194246403|ref|NC_011047.1|_Candidatus_Phytoplasma_mali_chromosome,_complete_genome | 601943 | 539713 | 89.66 |
13 | gi|19703352|ref|NC_003454.1|_Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586_chromosome,_complete_genome | 2174499 | 2114399 | 97.24 |
14 | gi|220927459|ref|NC_011898.1|_Clostridium_cellulolyticum_H10_chromosome,_complete_genome | 4068724 | 3857192 | 94.80 |
15 | gi|226309587|ref|NC_012491.1|_Brevibacillus_brevis_NBRC_100599,_complete_genome | 6296436 | 6062439 | 96.28 |
16 | gi|237806776|ref|NC_012691.1|_Tolumonas_auensis_DSM_9187_chromosome,_complete_genome | 3471292 | 3353057 | 96.59 |
17 | gi|238915976|ref|NC_012778.1|_Eubacterium_eligens_ATCC_27750_chromosome,_complete_genome | 2831389 | 2779372 | 98.16 |
18 | gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome | 3449685 | 3208661 | 93.01 |
19 | gi|255529916|ref|NC_013061.1|_Pedobacter_heparinus_DSM_2366_chromosome,_complete_genome | 5167383 | 4543899 | 87.93 |
20 | gi|257074450|ref|NC_013190.1|_Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1_plasmid_pAph02,_complete_sequence | 5306133 | 5087264 | 95.88 |
21 | gi|258513366|ref|NC_013216.1|_Desulfotomaculum_acetoxidans_DSM_771_chromosome,_complete_genome | 4545624 | 4341537 | 95.51 |
22 | gi|260685375|ref|NC_013316.1|_Clostridium_difficile_R20291_chromosome,_complete_genome | 4191139 | 3849180 | 91.84 |
23 | gi|269797069|ref|NC_013520.1|_Veillonella_parvula_DSM_2008_chromosome,_complete_genome | 2132142 | 2075796 | 97.36 |
24 | gi|284047386|ref|NC_013740.1|_Acidaminococcus_fermentans_DSM_20731_chromosome,_complete_genome | 2329769 | 2198689 | 94.37 |
25 | gi|291464753|ref|NC_007971.2|_Cupriavidus_metallidurans_CH34_plasmid_pMOL30,_complete_sequence | 6913352 | 6670164 | 96.48 |
26 | gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence | 6293399 | 6145526 | 97.65 |
27 | gi|300309346|ref|NC_014323.1|_Herbaspirillum_seropedicae_SmR1_chromosome,_complete_genome | 5513887 | 5424298 | 98.38 |
28 | gi|302344773|ref|NC_014370.1|_Prevotella_melaninogenica_ATCC_25845_chromosome_I,_complete_sequence | 3168282 | 3143352 | 99.21 |
29 | gi|302381116|ref|NC_014375.1|_Brevundimonas_subvibrioides_ATCC_15264_chromosome,_complete_genome | 3445263 | 3438397 | 99.80 |
30 | gi|302384444|ref|NC_014376.1|_Clostridium_saccharolyticum_WM1_chromosome,_complete_genome | 4662871 | 4283933 | 91.87 |
31 | gi|302872922|ref|NC_014393.1|_Clostridium_cellulovorans_743B_chromosome,_complete_genome | 5262222 | 5116303 | 97.23 |
32 | gi|310657316|ref|NC_014614.1|_Clostridium_sticklandii,_complete_genome | 2715461 | 2581213 | 95.06 |
33 | gi|313202490|ref|NC_014734.1|_Paludibacter_propionicigenes_WB4_chromosome,_complete_genome | 3685504 | 3670695 | 99.60 |
34 | gi|315121750|ref|NC_014774.1|_Candidatus_Liberibacter_solanacearum_CLso-ZC1_chromosome,_complete_genome | 1258277 | 1223179 | 97.21 |
35 | gi|315499382|ref|NC_014817.1|_Asticcacaulis_excentricus_CB_48_chromosome_2,_complete_sequence | 4308776 | 4137131 | 96.02 |
36 | gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome | 4482087 | 4333551 | 96.69 |
37 | gi|317131008|ref|NC_014828.1|_Ethanoligenens_harbinense_YUAN-3_chromosome,_complete_genome | 3008576 | 2876350 | 95.61 |
38 | gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome | 3998906 | 3904748 | 97.65 |
39 | gi|325102757|ref|NC_015177.1|_Pedobacter_saltans_DSM_12145_chromosome,_complete_genome | 4635236 | 4597423 | 99.18 |
40 | gi|325278757|ref|NC_015160.1|_Odoribacter_splanchnicus_DSM_20712_chromosome,_complete_genome | 4392288 | 4246181 | 96.67 |
41 | gi|326797444|ref|NC_015277.1|_Sphingobacterium_sp._21_chromosome,_complete_genome | 6226409 | 6181169 | 99.27 |
42 | gi|327312315|ref|NC_015311.1|_Prevotella_denticola_F0289_chromosome,_complete_genome | 2937589 | 2890263 | 98.39 |
43 | gi|328954613|ref|NC_015389.1|_Coriobacterium_glomerans_PW2_chromosome,_complete_genome | 2115681 | 2104044 | 99.45 |
44 | gi|330837866|ref|NC_015437.1|_Selenomonas_sputigena_ATCC_35185_chromosome,_complete_genome | 2568361 | 2543018 | 99.01 |
45 | gi|331703020|ref|NC_015431.1|_Mycoplasma_mycoides_subsp._capri_LC_str._95010,_complete_genome | 1155838 | 1095360 | 94.77 |
46 | gi|332159624|ref|NC_015224.1|_Yersinia_enterocolitica_subsp._palearctica_105.5R_chromosome,_complete_genome | 4621808 | 4451248 | 96.31 |
47 | gi|339441064|ref|NC_015737.1|_Clostridium_sp._SY8519,_complete_genome | 2835737 | 2787648 | 98.30 |
48 | gi|340620745|ref|NC_015845.1|_Enterococcus_hirae_ATCC_9790_plasmid_pTG9790,_complete_sequence | 2856406 | 2683720 | 93.95 |
49 | gi|342162671|ref|NC_015875.1|_Streptococcus_pseudopneumoniae_IS7493_chromosome,_complete_genome | 2195458 | 1817273 | 82.77 |
50 | gi|345428590|ref|NC_015964.1|_Haemophilus_parainfluenzae_T3T1,_complete_genome | 2086875 | 2057938 | 98.61 |
51 | gi|348025247|ref|NC_015873.1|_Megasphaera_elsdenii_DSM_20460,_complete_genome | 2464883 | 2312136 | 93.80 |
52 | gi|349703191|ref|NC_016046.1|_Oscillibacter_valericigenes_Sjm18-20_plasmid_pOBV01,_complete_sequence | 4470622 | 4275043 | 95.63 |
53 | gi|352516173|ref|NC_016052.1|_Tetragenococcus_halophilus_NBRC_12172,_complete_genome | 2562720 | 2412356 | 94.13 |
54 | gi|352683411|ref|NC_016077.1|_Acidaminococcus_intestini_RyC-MR95_chromosome,_complete_genome | 2487765 | 2435707 | 97.91 |
55 | gi|374294493|ref|NC_016627.1|_Clostridium_clariflavum_DSM_19732_chromosome,_complete_genome | 4897678 | 4622691 | 94.39 |
56 | gi|374307319|ref|NC_016630.1|_Filifactor_alocis_ATCC_35896_chromosome,_complete_genome | 1931012 | 1884765 | 97.61 |
57 | gi|375253814|ref|NC_016610.1|_Tannerella_forsythia_ATCC_43037_chromosome,_complete_genome | 3405521 | 3362747 | 98.74 |
58 | gi|383760671|ref|NC_017077.1|_Selenomonas_ruminantium_subsp._lactilytica_TAM6421_plasmid_pSRC7,_complete_sequence | 3631933 | 3515356 | 96.79 |
59 | gi|385777386|ref|NC_017304.1|_Clostridium_thermocellum_DSM_1313_chromosome,_complete_genome | 3561619 | 3486073 | 97.88 |
60 | gi|386085705|ref|NC_017563.1|_Streptococcus_thermophilus_ND03_chromosome,_complete_genome | 1831949 | 1755271 | 95.81 |
61 | gi|386348020|ref|NC_017584.1|_Rhodospirillum_rubrum_F11_chromosome,_complete_genome | 4352814 | 4038642 | 92.78 |
62 | gi|387132089|ref|NC_017861.1|_Prevotella_intermedia_17_chromosome_chromosome_II,_complete_sequence | 2699437 | 2640255 | 97.81 |
63 | gi|387816237|ref|NC_017299.1|_Clostridium_botulinum_H04402_065,_complete_genome | 3919740 | 3754206 | 95.78 |
64 | gi|387878539|ref|NC_017905.1|_Streptococcus_parasanguinis_FW213_chromosome,_complete_genome | 2171601 | 2139465 | 98.52 |
65 | gi|390945347|ref|NC_018011.1|_Alistipes_finegoldii_DSM_17242_chromosome,_complete_genome | 3734239 | 3394669 | 90.91 |
66 | gi|407472532|ref|NC_018664.1|_Clostridium_acidurici_9a_chromosome,_complete_genome | 3108248 | 3079409 | 99.07 |
67 | gi|409101469|ref|NC_018867.1|_Dehalobacter_sp._CF_chromosome,_complete_genome | 3092048 | 2996359 | 96.91 |
68 | gi|427740400|ref|NC_019679.1|_Rivularia_sp._PCC_7116_plasmid_pRIV7116.01,_complete_sequence | 8728773 | 8376718 | 95.97 |
69 | gi|431792069|ref|NC_019903.1|_Desulfitobacterium_dichloroeliminans_LMG_P-21439_chromosome,_complete_genome | 3624449 | 3536065 | 97.56 |
70 | gi|431795410|ref|NC_019904.1|_Echinicola_vietnamensis_DSM_17526_chromosome,_complete_genome | 5608040 | 5543439 | 98.85 |
71 | gi|434408147|ref|NC_019758.1|_Cylindrospermum_stagnale_PCC_7417_plasmid_pCYLST.03,_complete_sequence | 7610389 | 7322346 | 96.22 |
72 | gi|472465460|ref|NC_020887.1|_Clostridium_stercorarium_subsp._stercorarium_DSM_8532,_complete_genome | 2969999 | 2938517 | 98.94 |
73 | gi|479136967|ref|NC_021009.1|_Coprococcus_catus_GD/7_draft_genome | 3463414 | 3409572 | 98.45 |
74 | gi|479146200|ref|NC_021012.1|_Roseburia_intestinalis_XB6B4_draft_genome | 4164855 | 4001129 | 96.07 |
75 | gi|479150083|ref|NC_021013.1|_Ruminococcus_bromii_L2-63_draft_genome | 2231037 | 1395448 | 62.55 |
76 | gi|479152295|ref|NC_021014.1|_Ruminococcus_sp._SR1/5_draft_genome | 3511612 | 3380508 | 96.27 |
77 | gi|479155735|ref|NC_021015.1|_Ruminococcus_torques_L2-14_draft_genome | 3277778 | 3204148 | 97.75 |
78 | gi|479158859|ref|NC_021016.1|_Butyrate-producing_bacterium_SSC/2,_complete_genome | 3050979 | 3038521 | 99.59 |
79 | gi|479166807|ref|NC_021018.1|_Coprococcus_sp._ART55/1_draft_genome | 2888039 | 2753457 | 95.34 |
80 | gi|479169109|ref|NC_021019.1|_Eubacterium_cylindroides_T2-87_draft_genome | 1661181 | 1632389 | 98.27 |
81 | gi|479170689|ref|NC_021020.1|_Faecalibacterium_prausnitzii_SL3/3_draft_genome | 3165875 | 3142987 | 99.28 |
82 | gi|479176048|ref|NC_021022.1|_Ruminococcus_obeum_A2-162_draft_genome | 3692226 | 3561307 | 96.45 |
83 | gi|479185170|ref|NC_021030.1|_Alistipes_shahii_WAL_8301_draft_genome | 3649672 | 3644732 | 99.86 |
84 | gi|479199283|ref|NC_021039.1|_Ruminococcus_champanellensis_18P13,_complete_genome | 2513381 | 2278503 | 90.65 |
85 | gi|479210985|ref|NC_021043.1|_Eubacterium_siraeum_V10Sc8a_draft_genome | 2779231 | 2284514 | 82.20 |
86 | gi|479336697|ref|NC_021047.1|_Clostridium_cf._saccharolyticum_K10,_complete_genome | 3608868 | 3553917 | 98.48 |
87 | gi|482887500|ref|NC_021083.1|_Mycoplasma_putrefaciens_Mput9231,_complete_genome | 859987 | 851410 | 99.00 |
88 | gi|50364815|ref|NC_006055.1|_Mesoplasma_florum_L1_chromosome,_complete_genome | 793224 | 787031 | 99.22 |
89 | gi|507383177|ref|NC_021284.1|_Spiroplasma_syrphidicola_EA-1,_complete_genome | 1107344 | 1105648 | 99.85 |
90 | gi|509152352|ref|NC_021354.1|_Erysipelothrix_rhusiopathiae_SY1027,_complete_genome | 1752910 | 1741687 | 99.36 |
91 | gi|51593942|ref|NC_006154.1|_Yersinia_pseudotuberculosis_IP_32953_plasmid_pYptb32953,_complete_sequence | 4840898 | 4398133 | 90.85 |
92 | gi|52421214|ref|NC_006297.1|_Bacteroides_fragilis_YCH46_plasmid_pBFY46,_complete_sequence | 5310990 | 4974340 | 93.66 |
93 | gi|525905724|ref|NC_021832.1|_Spiroplasma_taiwanense_CT-1_plasmid,_complete_sequence | 1086278 | 805192 | 74.12 |
94 | gi|525908085|ref|NC_021833.1|_Spiroplasma_diminutum_CUAS-1,_complete_genome | 945296 | 706899 | 74.78 |
95 | gi|56899872|ref|NC_006578.1|_Bacillus_thuringiensis_serovar_konkukian_str._97-27_plasmid_pBT9727,_complete_sequence | 5314793 | 3875789 | 72.92 |
96 | gi|58036264|ref|NC_004307.2|_Bifidobacterium_longum_NCC2705_chromosome,_complete_genome | 2260266 | 2119863 | 93.79 |
97 | gi|67078390|ref|NC_007107.1|_Bacillus_cereus_E33L_plasmid_pE33L9,_complete_sequence | 5843235 | 5234555 | 89.58 |
98 | gi|72384244|ref|NC_007337.1|_Ralstonia_eutropha_JMP134_plasmid_1,_complete_sequence | 7255290 | 7215644 | 99.45 |
99 | gi|83588874|ref|NC_007644.1|_Moorella_thermoacetica_ATCC_39073_chromosome,_complete_genome | 2628784 | 2616875 | 99.55 |
100 | gi|94972398|ref|NC_008014.1|_Lawsonia_intracellularis_PHE/MN1-00_plasmid_3,_complete_sequence | 1719014 | 1679933 | 97.73 |
101 | metagenome | 359823204 | 341824807 | 95.00 |
102 rows × 4 columns
import os
for i in [1, 2, '2b']:
for j in [31, 41 ,51]:
f = "NewMock{i}/out_{j}/mummer/metagenome-coverage.1000.tsv".format(i=i, j=j)
if os.path.isfile(f):
mgcovi = pd.read_csv(f, sep="\t").sort("genome").reset_index(drop=True)
mgcovi.plot(kind="bar", y="contig_cov_percentage", title=f)
show()
For CONCOCT we used a cut-off of 1K so we can see what we are missing because of this.
f100 = "NewMock2b/out_{j}/mummer/metagenome-coverage.100.tsv".format(j=41)
f1000 = "NewMock2b/out_{j}/mummer/metagenome-coverage.1000.tsv".format(j=41)
mgcov100 = pd.read_csv(f100, sep="\t").sort("genome").reset_index(drop=True)
mgcov1000 = pd.read_csv(f1000, sep="\t").sort("genome").reset_index(drop=True)
p = pd.concat([mgcov100["contig_cov_percentage"], mgcov1000["contig_cov_percentage"]], axis=1)
p.columns= ["min100","min1000"]
p
min100 | min1000 | |
---|---|---|
0 | 87.65 | 72.45 |
1 | 97.29 | 97.17 |
2 | 98.68 | 98.67 |
3 | 96.05 | 96.00 |
4 | 96.65 | 96.48 |
5 | 93.06 | 92.94 |
6 | 97.61 | 97.61 |
7 | 98.46 | 98.37 |
8 | 99.68 | 99.68 |
9 | 97.46 | 97.43 |
10 | 99.03 | 99.01 |
11 | 94.58 | 94.47 |
12 | 89.66 | 89.66 |
13 | 97.28 | 97.24 |
14 | 94.87 | 94.80 |
15 | 96.36 | 96.28 |
16 | 96.65 | 96.59 |
17 | 98.22 | 98.16 |
18 | 93.15 | 93.01 |
19 | 87.95 | 87.93 |
20 | 95.94 | 95.88 |
21 | 95.77 | 95.51 |
22 | 91.99 | 91.84 |
23 | 97.36 | 97.36 |
24 | 94.42 | 94.37 |
25 | 96.56 | 96.48 |
26 | 97.67 | 97.65 |
27 | 98.39 | 98.38 |
28 | 99.23 | 99.21 |
29 | 99.80 | 99.80 |
30 | 91.89 | 91.87 |
31 | 97.26 | 97.23 |
32 | 95.06 | 95.06 |
33 | 99.60 | 99.60 |
34 | 97.31 | 97.21 |
35 | 96.04 | 96.02 |
36 | 96.70 | 96.69 |
37 | 95.64 | 95.61 |
38 | 97.65 | 97.65 |
39 | 99.23 | 99.18 |
40 | 96.73 | 96.67 |
41 | 99.27 | 99.27 |
42 | 98.40 | 98.39 |
43 | 99.45 | 99.45 |
44 | 99.11 | 99.01 |
45 | 94.77 | 94.77 |
46 | 96.48 | 96.31 |
47 | 98.36 | 98.30 |
48 | 94.01 | 93.95 |
49 | 82.81 | 82.77 |
50 | 98.65 | 98.61 |
51 | 93.84 | 93.80 |
52 | 95.84 | 95.63 |
53 | 94.19 | 94.13 |
54 | 97.93 | 97.91 |
55 | 94.55 | 94.39 |
56 | 97.74 | 97.61 |
57 | 98.75 | 98.74 |
58 | 96.90 | 96.79 |
59 | 97.93 | 97.88 |
60 | 95.96 | 95.81 |
61 | 92.78 | 92.78 |
62 | 97.81 | 97.81 |
63 | 95.79 | 95.78 |
64 | 98.59 | 98.52 |
65 | 90.95 | 90.91 |
66 | 99.08 | 99.07 |
67 | 96.94 | 96.91 |
68 | 95.97 | 95.97 |
69 | 97.60 | 97.56 |
70 | 98.87 | 98.85 |
71 | 96.23 | 96.22 |
72 | 99.01 | 98.94 |
73 | 98.52 | 98.45 |
74 | 96.08 | 96.07 |
75 | 62.55 | 62.55 |
76 | 96.27 | 96.27 |
77 | 97.86 | 97.75 |
78 | 99.60 | 99.59 |
79 | 95.39 | 95.34 |
80 | 98.36 | 98.27 |
81 | 99.28 | 99.28 |
82 | 96.52 | 96.45 |
83 | 99.89 | 99.86 |
84 | 90.65 | 90.65 |
85 | 82.26 | 82.20 |
86 | 98.48 | 98.48 |
87 | 99.00 | 99.00 |
88 | 99.22 | 99.22 |
89 | 99.88 | 99.85 |
90 | 99.36 | 99.36 |
91 | 90.90 | 90.85 |
92 | 93.68 | 93.66 |
93 | 74.12 | 74.12 |
94 | 74.78 | 74.78 |
95 | 74.12 | 72.92 |
96 | 93.82 | 93.79 |
97 | 91.58 | 89.58 |
98 | 99.47 | 99.45 |
99 | 99.55 | 99.55 |
100 | 97.73 | 97.73 |
101 | 95.42 | 95.00 |
102 rows × 2 columns
p.plot(kind="bar", title=f1000)
<matplotlib.axes.AxesSubplot at 0x5b8e550>
refcov1 = pd.read_csv("NewMock1/ref/map/cov_per_bam.tsv", sep="\t").sort("contig").reset_index(drop=True)
refcov1
contig | length | GC | cov_mean_sample_Sorted_Sample1006_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample1023_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample118_R1_seed0_CPUs36 | cov_mean_sample_Sorted_Sample120_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample127_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample134_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample177_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample215_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample230_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample234_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample244_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample261_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample263_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample290_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample302_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample321_R1_seed0_CPUs42 | cov_mean_sample_Sorted_Sample330_R1_seed0_CPUs42 | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | gi|116334879|ref|NC_008499.1|_Lactobacillus_brevis_ATCC_367_plasmid_2,_complete_sequence | 2340228 | 46.058247 | 0.000000 | 21.616386 | 44.758226 | 20.393597 | 25.675921 | 0.000000 | 0.000000 | 0.000000 | 16.829453 | 0.000000 | 0.000000 | 0.000000 | 106.566463 | 26.783658 | 37.783417 | 0.000000 | 0.000000 | ... |
1 | gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome | 5163189 | 42.201496 | 0.000852 | 0.078052 | 0.002750 | 17.750954 | 0.015998 | 0.000329 | 0.000620 | 0.000639 | 0.085663 | 0.003079 | 0.002712 | 0.183354 | 0.000697 | 0.013228 | 0.186062 | 0.001530 | 0.013305 | ... |
2 | gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome | 5594477 | 50.484165 | 14.245338 | 28.167468 | 26.043889 | 23.644675 | 9.902977 | 15.094643 | 43.549944 | 9.128696 | 11.502685 | 20.805997 | 32.254783 | 9.867060 | 7.809678 | 25.492129 | 20.395582 | 19.749462 | 35.732663 | ... |
3 | gi|187734516|ref|NC_010655.1|_Akkermansia_muciniphila_ATCC_BAA-835_chromosome,_complete_genome | 2664102 | 55.762354 | 44.372585 | 1.129884 | 0.000000 | 0.000000 | 2.126396 | 0.000000 | 5.367514 | 0.000000 | 0.854233 | 0.000000 | 1.850129 | 0.000000 | 0.000000 | 0.266575 | 3.938814 | 0.000000 | 0.909864 | ... |
4 | gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome | 5069678 | 50.519461 | 139.890162 | 3.696467 | 3.241958 | 0.629618 | 2.528965 | 4.374623 | 1.257970 | 2.652228 | 3.528366 | 6.011419 | 5.711946 | 2.797879 | 245.270865 | 4.203473 | 2.582793 | 5.724117 | 5.461942 | ... |
5 | gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome | 3449685 | 41.481179 | 0.025074 | 0.857867 | 0.069716 | 0.008812 | 0.026814 | 0.000000 | 0.000000 | 0.000000 | 0.028234 | 0.006899 | 3.806514 | 0.000000 | 0.716260 | 0.010001 | 0.005450 | 0.003595 | 0.000000 | ... |
6 | gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence | 6293399 | 42.860289 | 0.283880 | 0.436611 | 1.419870 | 0.413428 | 0.578330 | 0.000032 | 0.000095 | 0.000000 | 1.805253 | 1.988394 | 2.344524 | 2.272227 | 0.002288 | 7.469521 | 0.684520 | 0.380809 | 9.202417 | ... |
7 | gi|312132275|ref|NC_014656.1|_Bifidobacterium_longum_subsp._longum_BBMN68_chromosome,_complete_genome | 2265943 | 59.946036 | 0.071581 | 0.000000 | 15.688796 | 415.526229 | 27.581285 | 0.000000 | 0.000000 | 0.000000 | 169.406190 | 0.005737 | 71.059589 | 19.998370 | 5.810654 | 10.726443 | 118.100644 | 31.297444 | 47.359183 | ... |
8 | gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome | 4482087 | 43.615307 | 7.997319 | 0.000045 | 0.000000 | 0.000000 | 0.512923 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 3.044033 | 0.000000 | 11.747711 | ... |
9 | gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome | 3998906 | 44.717455 | 7.644846 | 18.850512 | 53.930206 | 96.586767 | 67.199853 | 0.000100 | 3.269498 | 0.000150 | 59.082046 | 19.126372 | 31.172714 | 0.019630 | 5.144784 | 120.484937 | 11.543146 | 40.705468 | 55.332635 | ... |
10 | gi|324959701|ref|NC_015166.1|_Bacteroides_salanitronis_DSM_18170_plasmid_pBACSA03,_complete_sequence | 4308663 | 46.490710 | 12.848623 | 85.169282 | 0.000139 | 1.394610 | 8.420416 | 181.179949 | 289.573353 | 321.180057 | 25.824556 | 0.000000 | 0.000000 | 85.920542 | 0.000000 | 0.000070 | 69.273830 | 0.000000 | 0.000000 | ... |
11 | gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome | 3592125 | 48.496837 | 18.601658 | 0.000167 | 188.063880 | 19.206045 | 52.423012 | 0.000000 | 0.000000 | 0.000000 | 71.745003 | 20.347710 | 0.008908 | 0.003118 | 0.003368 | 6.635633 | 12.928023 | 11.135988 | 0.006514 | ... |
12 | gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome | 5373121 | 43.415047 | 0.001898 | 66.424020 | 0.010720 | 19.081004 | 11.566043 | 0.000019 | 0.000503 | 0.000019 | 73.822171 | 0.010236 | 0.012991 | 158.616291 | 0.605189 | 0.042638 | 163.087023 | 0.005267 | 0.046155 | ... |
13 | gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome | 4464699 | 28.359426 | 31.700124 | 0.000000 | 6.485146 | 2.910357 | 3.049262 | 1.553461 | 149.281135 | 2.033353 | 7.277757 | 6.794377 | 0.000000 | 24.028706 | 44.490495 | 5.937440 | 0.000000 | 1.089337 | 1.270442 | ... |
14 | gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence | 3062505 | 37.424494 | 0.002743 | 60.754999 | 18.343538 | 48.516973 | 162.265492 | 0.000000 | 0.000000 | 0.000000 | 4.870231 | 0.000000 | 1.063483 | 0.000000 | 0.000033 | 35.335235 | 0.000065 | 0.000000 | 0.000000 | ... |
15 | gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome | 5437407 | 50.648903 | 15.002381 | 87.275896 | 112.155976 | 2.205018 | 17.138736 | 128.071255 | 4.872453 | 87.239255 | 36.159483 | 162.305168 | 128.317627 | 19.807484 | 17.018903 | 37.767758 | 34.745927 | 183.350144 | 105.602020 | ... |
16 | gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome | 1667841 | 38.873670 | 0.000000 | 0.000000 | 0.000000 | 177.960344 | 48.818351 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 11.243872 | 12.806107 | 1.609848 | 45.784593 | 19.419726 | 0.000000 | 7.352294 | 1.444604 | ... |
17 | gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome | 3248271 | 56.821891 | 189.095158 | 0.000831 | 18.992949 | 13.275094 | 63.167580 | 0.000000 | 0.000000 | 0.000000 | 34.014529 | 0.026383 | 0.018410 | 0.004464 | 2.271762 | 82.841478 | 6.171320 | 0.021396 | 0.011637 | ... |
18 | gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome | 4641652 | 50.790710 | 45.147522 | 136.656545 | 80.272759 | 11.016932 | 148.398358 | 158.337387 | 27.289480 | 86.859450 | 86.914168 | 231.819905 | 230.330731 | 164.935461 | 48.125695 | 186.337947 | 69.911237 | 191.310240 | 230.434593 | ... |
19 | gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome | 5179971 | 50.613469 | 39.635580 | 3.813853 | 3.439628 | 0.487217 | 2.462246 | 4.718905 | 1.012135 | 2.894172 | 13.602495 | 6.405452 | 5.879399 | 2.743162 | 33.910142 | 7.506586 | 7.041286 | 6.212763 | 5.510152 | ... |
20 rows × 131 columns
print refcov1.columns[67]
print refcov1.columns[66]
print refcov1.columns[3]
print refcov1.columns[2]
percentage_covered_sample_Sorted_Sample1006_R1_seed0_CPUs42 cov_mean_sample_Sorted_Sample983_R1_seed0_CPUs42 cov_mean_sample_Sorted_Sample1006_R1_seed0_CPUs42 GC
ax = refcov1.ix[:, 3:66].plot(legend=False, title='Mock1 cov per sample')
ax.set_xlabel("genomes")
ax.set_ylabel("x fold coverage")
<matplotlib.text.Text at 0xdee61d0>
ax = refcov1.ix[:, 3:66].sum(axis=1).plot(kind='bar', title="Mock1 sum sample cov per genome")
ax.set_xlabel("genomes")
ax.set_ylabel("x fold coverage")
<matplotlib.text.Text at 0xe218750>
ax = refcov1.ix[:, 3:66].sum(axis=1).plot(logy=True, title="Mock1 sum sample cov per genome")
ax.set_xlabel("genomes")
ax.set_ylabel("x fold coverage")
<matplotlib.text.Text at 0xd0f0cd0>
refcov2b = pd.read_csv("NewMock2b/ref/map/cov_per_bam.tsv", sep="\t").sort("contig").reset_index(drop=True)
refcov2b
contig | length | GC | cov_mean_sample_Sample1006_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1023_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1036_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1063_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1095_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1100_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1128_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1129_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1131_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1140_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1146_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1150_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1164_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1180_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample118_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample1195_sorted_R1_seed0_CPUs42 | cov_mean_sample_Sample120_sorted_R1_seed0_CPUs42 | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | gi|10954629|ref|NC_001399.1|_Ralstonia_solanacearum_M4S_plasmid_pJTPS1,_complete_sequence | 7768018 | 66.724845 | 0.000000 | 0.000000 | 0.000000 | 0.000360 | 0.000257 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000206 | 0.000103 | 0.000618 | 0.000103 | 0.000000 | 0.000000 | 0.000154 | 0.000000 | ... |
1 | gi|110801439|ref|NC_008262.1|_Clostridium_perfringens_SM101_chromosome,_complete_genome | 2960088 | 28.230917 | 0.003006 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.001689 | 0.000000 | 0.000135 | ... |
2 | gi|119025018|ref|NC_008618.1|_Bifidobacterium_adolescentis_ATCC_15703_chromosome,_complete_genome | 2089644 | 59.184340 | 0.002106 | 0.036081 | 0.000000 | 6.330072 | 0.000000 | 0.000479 | 0.000000 | 0.000000 | 1.322027 | 0.000000 | 0.031823 | 0.000670 | 0.000000 | 0.008613 | 0.507067 | 0.000000 | 0.410686 | ... |
3 | gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome | 5163189 | 42.201496 | 9.218600 | 67.664591 | 1.898669 | 21.924676 | 11.006170 | 5.217610 | 1.790461 | 2.529862 | 2.627297 | 11.451224 | 37.970823 | 4.500548 | 0.862091 | 48.724455 | 36.069332 | 0.107878 | 4.483201 | ... |
4 | gi|150006674|ref|NC_009615.1|_Parabacteroides_distasonis_ATCC_8503_chromosome,_complete_genome | 4811379 | 45.059576 | 0.002702 | 0.022031 | 0.001829 | 0.006671 | 0.005591 | 0.003325 | 0.003138 | 0.001289 | 0.006027 | 0.454749 | 0.010371 | 0.003076 | 0.003117 | 0.017292 | 0.012117 | 0.065052 | 0.002598 | ... |
5 | gi|150014892|ref|NC_009617.1|_Clostridium_beijerinckii_NCIMB_8052_chromosome,_complete_genome | 6000632 | 29.855589 | 3.026972 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 1.441130 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000533 | 0.000000 | 3.292341 | ... |
6 | gi|152979768|ref|NC_009659.1|_Janthinobacterium_sp._Marseille_chromosome,_complete_genome | 4110251 | 54.234182 | 0.000000 | 0.000049 | 0.000000 | 0.000000 | 0.000049 | 0.000049 | 5.249637 | 8.758974 | 0.000000 | 1.820106 | 0.000000 | 0.000000 | 36.738771 | 0.000000 | 0.000000 | 0.000000 | 0.000097 | ... |
7 | gi|160878162|ref|NC_010001.1|_Clostridium_phytofermentans_ISDg_chromosome,_complete_genome | 4847594 | 35.348525 | 0.000000 | 0.120306 | 0.000000 | 16.327724 | 0.000000 | 0.000000 | 0.645921 | 0.335010 | 30.393082 | 0.062628 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.072076 | 0.000000 | 0.520045 | ... |
8 | gi|162446888|ref|NC_010163.1|_Acholeplasma_laidlawii_PG-8A_chromosome,_complete_genome | 1496992 | 31.927759 | 0.000000 | 0.000000 | 2.199702 | 0.000401 | 18.986950 | 0.002004 | 2.072841 | 0.005611 | 0.000668 | 0.835253 | 0.000000 | 0.005210 | 14.892273 | 0.000000 | 0.000267 | 0.014028 | 0.574742 | ... |
9 | gi|170780462|ref|NC_010407.1|_Clavibacter_michiganensis_subsp._sepedonicus_chromosome,_complete_genome | 3403786 | 72.377435 | 1.174385 | 0.596153 | 0.000000 | 2.895857 | 0.000000 | 12.926808 | 0.000000 | 5.777898 | 0.000000 | 0.179562 | 0.000000 | 0.000000 | 0.000000 | 0.092484 | 0.000000 | 0.486514 | 2.474681 | ... |
10 | gi|187734516|ref|NC_010655.1|_Akkermansia_muciniphila_ATCC_BAA-835_chromosome,_complete_genome | 2664102 | 55.762354 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 16.286395 | 0.000000 | 0.000000 | 5.494459 | 0.000000 | 6.206130 | 25.017184 | 0.237001 | 0.000000 | 6.749790 | 0.000000 | ... |
11 | gi|188993864|ref|NC_010729.1|_Porphyromonas_gingivalis_ATCC_33277,_complete_genome | 2354886 | 48.359284 | 15.966531 | 0.000000 | 0.000000 | 0.000000 | 4.413445 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000425 | 0.000000 | 1.890764 | 0.000000 | 0.000042 | 0.000000 | 0.000000 | ... |
12 | gi|194246403|ref|NC_011047.1|_Candidatus_Phytoplasma_mali_chromosome,_complete_genome | 601943 | 21.393720 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
13 | gi|19703352|ref|NC_003454.1|_Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586_chromosome,_complete_genome | 2174499 | 27.151588 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
14 | gi|220927459|ref|NC_011898.1|_Clostridium_cellulolyticum_H10_chromosome,_complete_genome | 4068724 | 37.403987 | 0.000000 | 0.000000 | 0.000147 | 4.448477 | 0.000197 | 0.000098 | 0.000147 | 0.000000 | 0.000246 | 0.000000 | 0.000000 | 0.000246 | 0.000000 | 0.000000 | 1.034760 | 0.000049 | 0.000000 | ... |
15 | gi|226309587|ref|NC_012491.1|_Brevibacillus_brevis_NBRC_100599,_complete_genome | 6296436 | 47.273553 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.413717 | 0.000016 | 0.000000 | 0.259222 | 0.000000 | 0.346381 | 0.000000 | 0.263604 | 0.000000 | 0.000000 | 0.000000 | 0.512727 | 0.000000 | ... |
16 | gi|237806776|ref|NC_012691.1|_Tolumonas_auensis_DSM_9187_chromosome,_complete_genome | 3471292 | 49.027019 | 0.000000 | 0.000000 | 0.000000 | 0.000230 | 0.000058 | 0.406015 | 0.000288 | 0.000115 | 0.000000 | 0.000058 | 0.081870 | 0.000058 | 0.000346 | 0.000000 | 0.000000 | 0.932839 | 0.000173 | ... |
17 | gi|238915976|ref|NC_012778.1|_Eubacterium_eligens_ATCC_27750_chromosome,_complete_genome | 2831389 | 37.571100 | 0.001060 | 0.013456 | 0.010101 | 0.014692 | 0.009853 | 0.002896 | 0.005086 | 0.001801 | 0.023487 | 31.490891 | 0.000071 | 0.013704 | 0.005156 | 0.001766 | 0.001342 | 0.002190 | 0.000883 | ... |
18 | gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome | 3449685 | 41.481179 | 0.009479 | 0.066440 | 0.139751 | 0.139055 | 0.097747 | 0.197350 | 0.054613 | 0.015856 | 0.314810 | 2.204380 | 0.005971 | 0.177435 | 0.054468 | 0.009652 | 0.014465 | 0.016407 | 0.038756 | ... |
19 | gi|255529916|ref|NC_013061.1|_Pedobacter_heparinus_DSM_2366_chromosome,_complete_genome | 5167383 | 42.048886 | 0.000000 | 0.000000 | 17.056663 | 0.000000 | 10.521880 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 1.285194 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 5.127358 | ... |
20 | gi|257074450|ref|NC_013190.1|_Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1_plasmid_pAph02,_complete_sequence | 5306133 | 63.969260 | 0.206175 | 0.436774 | 0.000000 | 7.452309 | 0.000000 | 0.994989 | 3.496291 | 4.323823 | 0.000000 | 0.060872 | 0.111643 | 0.000000 | 0.000000 | 0.348084 | 3.152054 | 0.000000 | 0.396479 | ... |
21 | gi|258513366|ref|NC_013216.1|_Desulfotomaculum_acetoxidans_DSM_771_chromosome,_complete_genome | 4545624 | 41.554845 | 15.776647 | 0.066479 | 0.000000 | 0.363509 | 0.000000 | 0.107707 | 0.000000 | 4.667747 | 0.000000 | 0.135514 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
22 | gi|260685375|ref|NC_013316.1|_Clostridium_difficile_R20291_chromosome,_complete_genome | 4191139 | 28.807396 | 0.002481 | 0.010904 | 0.002434 | 0.000191 | 0.002291 | 0.011238 | 0.049485 | 0.001241 | 0.000764 | 0.006514 | 0.000119 | 0.002410 | 0.004008 | 0.001336 | 0.000954 | 0.001073 | 0.007921 | ... |
23 | gi|269797069|ref|NC_013520.1|_Veillonella_parvula_DSM_2008_chromosome,_complete_genome | 2132142 | 38.629275 | 32.577718 | 0.000000 | 0.000000 | 0.000000 | 8.444278 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 22.646329 | 0.000000 | 0.000000 | 16.603576 | 0.000000 | 0.000000 | ... |
24 | gi|284047386|ref|NC_013740.1|_Acidaminococcus_fermentans_DSM_20731_chromosome,_complete_genome | 2329769 | 55.842704 | 0.000000 | 0.000343 | 0.000000 | 0.000000 | 0.000043 | 24.183301 | 0.000000 | 0.000000 | 0.000172 | 0.000172 | 0.000000 | 0.000000 | 0.000000 | 0.000429 | 0.000000 | 0.000000 | 0.000858 | ... |
25 | gi|291464753|ref|NC_007971.2|_Cupriavidus_metallidurans_CH34_plasmid_pMOL30,_complete_sequence | 6913352 | 63.530990 | 0.000000 | 0.000000 | 0.000000 | 0.004513 | 0.001519 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.001273 | 0.001504 | 6.446286 | 0.000579 | 0.000000 | 0.000000 | 0.932673 | 0.000000 | ... |
26 | gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence | 6293399 | 42.860289 | 0.010265 | 0.074840 | 0.014634 | 0.029062 | 0.029078 | 0.021832 | 0.022229 | 0.007102 | 0.018623 | 0.014571 | 0.042631 | 0.020021 | 0.022340 | 0.057393 | 0.042584 | 79.665691 | 0.018956 | ... |
27 | gi|300309346|ref|NC_014323.1|_Herbaspirillum_seropedicae_SmR1_chromosome,_complete_genome | 5513887 | 63.404564 | 0.000000 | 1.000192 | 0.000000 | 0.000000 | 0.472401 | 0.086217 | 0.000145 | 0.298551 | 0.000000 | 0.000073 | 0.052521 | 0.000000 | 1.610864 | 0.000000 | 0.000000 | 0.000000 | 0.156692 | ... |
28 | gi|302344773|ref|NC_014370.1|_Prevotella_melaninogenica_ATCC_25845_chromosome_I,_complete_sequence | 3168282 | 40.983315 | 0.000063 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 52.623231 | 0.974365 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
29 | gi|302381116|ref|NC_014375.1|_Brevundimonas_subvibrioides_ATCC_15264_chromosome,_complete_genome | 3445263 | 68.422701 | 0.000000 | 0.000000 | 1.918030 | 0.000000 | 0.739673 | 1.120427 | 0.000000 | 23.712553 | 0.000000 | 1.454906 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
30 | gi|302384444|ref|NC_014376.1|_Clostridium_saccharolyticum_WM1_chromosome,_complete_genome | 4662871 | 45.004741 | 0.000000 | 0.000000 | 0.000000 | 0.000150 | 0.000043 | 0.000000 | 0.000000 | 0.000000 | 0.000729 | 0.000064 | 0.000000 | 0.000000 | 0.000086 | 0.000000 | 0.000021 | 0.000000 | 0.000000 | ... |
31 | gi|302872922|ref|NC_014393.1|_Clostridium_cellulovorans_743B_chromosome,_complete_genome | 5262222 | 31.209402 | 0.001064 | 0.004827 | 0.009597 | 0.000551 | 0.000798 | 0.002071 | 0.000361 | 0.003496 | 0.009464 | 0.000380 | 0.000874 | 0.000152 | 0.002356 | 0.000456 | 49.986468 | 0.000760 | 0.000152 | ... |
32 | gi|310657316|ref|NC_014614.1|_Clostridium_sticklandii,_complete_genome | 2715461 | 33.299723 | 0.792405 | 0.209830 | 0.000000 | 9.681223 | 0.000000 | 1.432068 | 5.707449 | 0.000000 | 25.055886 | 0.345352 | 0.616384 | 6.072232 | 3.250670 | 1.989547 | 0.000000 | 0.000000 | 1.237635 | ... |
33 | gi|313202490|ref|NC_014734.1|_Paludibacter_propionicigenes_WB4_chromosome,_complete_genome | 3685504 | 38.856667 | 0.000053 | 2.547031 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 47.540401 | ... |
34 | gi|315121750|ref|NC_014774.1|_Candidatus_Liberibacter_solanacearum_CLso-ZC1_chromosome,_complete_genome | 1258277 | 35.240968 | 2.614327 | 0.000000 | 20.719984 | 0.000000 | 0.000000 | 2.294703 | 0.000000 | 0.000000 | 0.000000 | 0.241919 | 2.752772 | 2.625466 | 7.062123 | 1.741727 | 0.000000 | 2.577614 | 0.673133 | ... |
35 | gi|315499382|ref|NC_014817.1|_Asticcacaulis_excentricus_CB_48_chromosome_2,_complete_sequence | 4308776 | 59.508083 | 0.000000 | 3.589458 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 14.974322 | 0.000046 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
36 | gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome | 4482087 | 43.615307 | 0.000000 | 0.922057 | 0.000000 | 15.425506 | 1.745891 | 1.510751 | 0.000000 | 0.000000 | 21.193317 | 0.000000 | 0.191916 | 6.303087 | 0.000045 | 0.000000 | 0.000000 | 0.000000 | 1.585645 | ... |
37 | gi|317131008|ref|NC_014828.1|_Ethanoligenens_harbinense_YUAN-3_chromosome,_complete_genome | 3008576 | 55.558510 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 2.745836 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 1.963425 | 0.000000 | 21.219404 | ... |
38 | gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome | 3998906 | 44.717455 | 19.198072 | 0.001150 | 0.000100 | 0.000925 | 0.000200 | 0.000400 | 0.000000 | 0.000150 | 0.000050 | 0.000075 | 0.000500 | 0.000150 | 0.000000 | 0.000675 | 0.000850 | 0.003401 | 0.000125 | ... |
39 | gi|325102757|ref|NC_015177.1|_Pedobacter_saltans_DSM_12145_chromosome,_complete_genome | 4635236 | 36.582582 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 9.797364 | 0.000000 | 0.000000 | 0.000000 | 1.411515 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
40 | gi|325278757|ref|NC_015160.1|_Odoribacter_splanchnicus_DSM_20712_chromosome,_complete_genome | 4392288 | 43.358541 | 0.000706 | 0.005510 | 0.010951 | 0.005737 | 0.016096 | 0.563276 | 1.428331 | 0.004280 | 0.022471 | 0.642823 | 0.001525 | 0.013387 | 3.039842 | 3.628949 | 0.002732 | 0.116339 | 0.296880 | ... |
41 | gi|326797444|ref|NC_015277.1|_Sphingobacterium_sp._21_chromosome,_complete_genome | 6226409 | 41.101749 | 0.000000 | 14.924090 | 0.000000 | 0.000000 | 5.804163 | 0.000000 | 5.944351 | 0.000000 | 0.000000 | 0.149136 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.200018 | ... |
42 | gi|327312315|ref|NC_015311.1|_Prevotella_denticola_F0289_chromosome,_complete_genome | 2937589 | 50.360653 | 0.003166 | 0.000000 | 0.000000 | 0.000000 | 0.000340 | 0.002042 | 0.000102 | 0.000000 | 0.000000 | 0.000000 | 0.000817 | 0.000000 | 0.000068 | 0.000068 | 0.000000 | 0.000000 | 0.000000 | ... |
43 | gi|328954613|ref|NC_015389.1|_Coriobacterium_glomerans_PW2_chromosome,_complete_genome | 2115681 | 60.393462 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 36.593954 | 0.000000 | 0.000000 | 0.000000 | ... |
44 | gi|330837866|ref|NC_015437.1|_Selenomonas_sputigena_ATCC_35185_chromosome,_complete_genome | 2568361 | 57.106964 | 7.211355 | 0.569851 | 0.000000 | 0.000078 | 14.101205 | 2.060748 | 0.000000 | 0.000156 | 0.000000 | 0.483569 | 0.000000 | 7.757005 | 0.000000 | 0.363341 | 0.131055 | 5.103616 | 0.000000 | ... |
45 | gi|331703020|ref|NC_015431.1|_Mycoplasma_mycoides_subsp._capri_LC_str._95010,_complete_genome | 1155838 | 23.824446 | 6.658105 | 5.019848 | 0.000000 | 0.000000 | 0.000000 | 115.375775 | 0.000000 | 24.095042 | 0.000000 | 1.069947 | 0.491757 | 2.869580 | 0.000000 | 1.646491 | 0.000087 | 0.000000 | 0.000173 | ... |
46 | gi|332159624|ref|NC_015224.1|_Yersinia_enterocolitica_subsp._palearctica_105.5R_chromosome,_complete_genome | 4621808 | 46.958636 | 0.080444 | 0.000043 | 0.012787 | 22.038819 | 0.583831 | 0.001255 | 0.066468 | 0.048768 | 12.964972 | 0.011943 | 0.000000 | 1.448457 | 0.106319 | 0.069279 | 0.005020 | 0.118199 | 0.101193 | ... |
47 | gi|339441064|ref|NC_015737.1|_Clostridium_sp._SY8519,_complete_genome | 2835737 | 50.740495 | 0.010790 | 0.001904 | 0.007123 | 0.005043 | 0.008005 | 0.003879 | 0.003738 | 1.155207 | 0.003491 | 0.003315 | 0.000000 | 0.011884 | 0.008816 | 0.005995 | 0.000388 | 0.002045 | 0.000353 | ... |
48 | gi|340620745|ref|NC_015845.1|_Enterococcus_hirae_ATCC_9790_plasmid_pTG9790,_complete_sequence | 2856406 | 36.900462 | 0.000000 | 0.000000 | 0.000070 | 12.679205 | 12.698933 | 26.638204 | 5.402231 | 2.869750 | 0.000000 | 0.648069 | 0.504263 | 6.408866 | 10.860126 | 0.000000 | 0.000000 | 0.000000 | 6.789693 | ... |
49 | gi|342162671|ref|NC_015875.1|_Streptococcus_pseudopneumoniae_IS7493_chromosome,_complete_genome | 2195458 | 39.790695 | 0.001275 | 0.002687 | 5.940188 | 203.746740 | 0.000000 | 0.000091 | 25.268482 | 38.051657 | 0.000000 | 0.000273 | 0.001640 | 53.695231 | 105.215044 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
50 | gi|345428590|ref|NC_015964.1|_Haemophilus_parainfluenzae_T3T1,_complete_genome | 2086875 | 39.571848 | 0.000000 | 1.375051 | 0.002108 | 1.565236 | 9.936234 | 8.521882 | 1.500448 | 0.782736 | 0.001725 | 5.364093 | 0.000000 | 17.470642 | 0.009488 | 0.000000 | 0.000671 | 18.797701 | 0.219129 | ... |
51 | gi|348025247|ref|NC_015873.1|_Megasphaera_elsdenii_DSM_20460,_complete_genome | 2464883 | 52.797962 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000406 | 0.000000 | 0.000000 | 0.000000 | 5.959021 | 0.000000 | 0.000000 | 0.000000 | 17.115768 | 0.000000 | 0.000000 | 8.862273 | ... |
52 | gi|349703191|ref|NC_016046.1|_Oscillibacter_valericigenes_Sjm18-20_plasmid_pOBV01,_complete_sequence | 4470622 | 53.185731 | 1.295286 | 0.000000 | 30.701318 | 0.000000 | 11.573060 | 0.647281 | 0.000000 | 35.149028 | 0.000000 | 0.207577 | 0.000000 | 8.131570 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
53 | gi|352516173|ref|NC_016052.1|_Tetragenococcus_halophilus_NBRC_12172,_complete_genome | 2562720 | 36.041081 | 0.000000 | 0.000000 | 3.820198 | 0.000273 | 0.000156 | 7.112068 | 33.722056 | 7.651418 | 0.000000 | 0.000000 | 1.757096 | 0.000078 | 0.000234 | 0.369679 | 0.000000 | 0.000000 | 0.000156 | ... |
54 | gi|352683411|ref|NC_016077.1|_Acidaminococcus_intestini_RyC-MR95_chromosome,_complete_genome | 2487765 | 50.020601 | 0.001608 | 6.095008 | 0.008521 | 0.000000 | 0.009888 | 0.001768 | 0.000724 | 0.005386 | 3.276869 | 0.005386 | 0.000000 | 0.006914 | 0.021344 | 0.000724 | 0.000000 | 0.002814 | 9.113185 | ... |
55 | gi|374294493|ref|NC_016627.1|_Clostridium_clariflavum_DSM_19732_chromosome,_complete_genome | 4897678 | 35.717170 | 0.003634 | 0.000000 | 0.000000 | 0.000000 | 3.170402 | 0.004553 | 0.000020 | 0.000000 | 1.671346 | 0.687358 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.003389 | ... |
56 | gi|374307319|ref|NC_016630.1|_Filifactor_alocis_ATCC_35896_chromosome,_complete_genome | 1931012 | 35.445507 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 223.876911 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 29.542583 | 0.000000 | 198.874008 | 0.000155 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
57 | gi|375253814|ref|NC_016610.1|_Tannerella_forsythia_ATCC_43037_chromosome,_complete_genome | 3405521 | 46.975955 | 27.292581 | 0.000000 | 0.000000 | 0.000000 | 0.000499 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000411 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
58 | gi|383760671|ref|NC_017077.1|_Selenomonas_ruminantium_subsp._lactilytica_TAM6421_plasmid_pSRC7,_complete_sequence | 3631933 | 50.141812 | 0.000220 | 0.000000 | 8.080782 | 1.370276 | 20.667167 | 0.935472 | 0.000000 | 20.278383 | 0.000000 | 5.518595 | 0.315145 | 0.000055 | 0.000000 | 0.605733 | 0.000000 | 4.057272 | 1.029084 | ... |
59 | gi|385777386|ref|NC_017304.1|_Clostridium_thermocellum_DSM_1313_chromosome,_complete_genome | 3561619 | 39.148095 | 2.938735 | 0.000000 | 0.000000 | 0.000000 | 0.012129 | 3.810076 | 0.000000 | 0.007917 | 0.008956 | 0.000814 | 0.000618 | 0.002190 | 0.006598 | 0.000000 | 0.000000 | 0.000000 | 3.274599 | ... |
60 | gi|386085705|ref|NC_017563.1|_Streptococcus_thermophilus_ND03_chromosome,_complete_genome | 1831949 | 39.047921 | 0.001637 | 0.006987 | 0.000218 | 0.017081 | 0.000000 | 0.000983 | 0.003603 | 81.300086 | 0.000000 | 0.001092 | 0.004422 | 0.005349 | 0.008461 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
61 | gi|386348020|ref|NC_017584.1|_Rhodospirillum_rubrum_F11_chromosome,_complete_genome | 4352814 | 65.447432 | 0.337338 | 0.000000 | 6.753158 | 8.725802 | 12.518976 | 2.873039 | 7.089878 | 31.587508 | 18.788698 | 0.000000 | 0.523327 | 6.465790 | 7.187683 | 0.000000 | 0.000000 | 0.000000 | 0.091664 | ... |
62 | gi|387132089|ref|NC_017861.1|_Prevotella_intermedia_17_chromosome_chromosome_II,_complete_sequence | 2699437 | 43.478325 | 13.214262 | 0.000000 | 0.000000 | 0.000000 | 0.961737 | 0.000407 | 0.000000 | 0.000000 | 0.000000 | 0.111503 | 3.333320 | 0.000000 | 0.000296 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
63 | gi|387816237|ref|NC_017299.1|_Clostridium_botulinum_H04402_065,_complete_genome | 3919740 | 28.208095 | 45.414201 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000051 | 0.000000 | 0.000000 | 0.000000 | 0.000459 | 0.000000 | 0.000000 | ... |
64 | gi|387878539|ref|NC_017905.1|_Streptococcus_parasanguinis_FW213_chromosome,_complete_genome | 2171601 | 41.615426 | 5.339546 | 20.027116 | 0.001197 | 0.038036 | 0.000000 | 3.293553 | 0.004651 | 0.030300 | 0.000000 | 3.004919 | 10.688115 | 0.777062 | 0.018140 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
65 | gi|390945347|ref|NC_018011.1|_Alistipes_finegoldii_DSM_17242_chromosome,_complete_genome | 3734239 | 56.645732 | 0.001178 | 0.437162 | 0.297917 | 0.012292 | 0.412476 | 6.125221 | 0.438880 | 0.109201 | 27.850288 | 0.775325 | 0.003320 | 0.324775 | 0.449619 | 0.268406 | 0.046193 | 1.564694 | 0.283397 | ... |
66 | gi|407472532|ref|NC_018664.1|_Clostridium_acidurici_9a_chromosome,_complete_genome | 3108248 | 29.933583 | 0.000000 | 0.000032 | 0.000000 | 0.000000 | 0.000000 | 16.163544 | 0.000000 | 1.052223 | 0.000000 | 1.793751 | 0.000000 | 0.000000 | 0.000000 | 15.585311 | 0.000000 | 0.000000 | 28.555588 | ... |
67 | gi|409101469|ref|NC_018867.1|_Dehalobacter_sp._CF_chromosome,_complete_genome | 3092048 | 44.308141 | 0.000000 | 0.000000 | 1.045576 | 3.734112 | 2.513580 | 1.719421 | 1.993537 | 1.060320 | 0.875393 | 7.165655 | 7.914652 | 4.295223 | 0.000194 | 0.000517 | 2.610861 | 11.061085 | 0.270693 | ... |
68 | gi|427740400|ref|NC_019679.1|_Rivularia_sp._PCC_7116_plasmid_pRIV7116.01,_complete_sequence | 8728773 | 37.531621 | 0.794329 | 0.000000 | 6.733241 | 0.000000 | 9.173692 | 2.196574 | 6.703524 | 2.072955 | 1.562877 | 6.547993 | 0.227061 | 4.196713 | 3.047588 | 0.037277 | 0.000000 | 1.115354 | 0.000000 | ... |
69 | gi|431792069|ref|NC_019903.1|_Desulfitobacterium_dichloroeliminans_LMG_P-21439_chromosome,_complete_genome | 3624449 | 44.217921 | 0.000000 | 0.000000 | 0.000221 | 0.000883 | 0.000662 | 0.000662 | 5.088131 | 0.000552 | 0.000110 | 2.064665 | 0.080067 | 0.001490 | 1.229243 | 2.598368 | 0.000441 | 0.002648 | 0.000055 | ... |
70 | gi|431795410|ref|NC_019904.1|_Echinicola_vietnamensis_DSM_17526_chromosome,_complete_genome | 5608040 | 44.753693 | 0.000000 | 0.000464 | 0.000000 | 0.000000 | 0.000178 | 0.000000 | 0.000143 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
71 | gi|434408147|ref|NC_019758.1|_Cylindrospermum_stagnale_PCC_7417_plasmid_pCYLST.03,_complete_sequence | 7610389 | 42.202678 | 0.963671 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 1.794421 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.406441 | 0.000000 | 0.428304 | 0.000000 | ... |
72 | gi|472465460|ref|NC_020887.1|_Clostridium_stercorarium_subsp._stercorarium_DSM_8532,_complete_genome | 2969999 | 42.254997 | 5.274911 | 0.000000 | 0.000000 | 0.000000 | 14.804793 | 87.159287 | 0.000000 | 15.981043 | 11.942904 | 0.000000 | 1.432031 | 4.455401 | 13.414376 | 0.000000 | 0.000000 | 0.000000 | 0.146532 | ... |
73 | gi|479136967|ref|NC_021009.1|_Coprococcus_catus_GD/7_draft_genome | 3463414 | 43.155424 | 0.034590 | 2.803810 | 30.485653 | 61.159914 | 34.057556 | 16.733100 | 18.609219 | 0.210715 | 48.083125 | 0.217672 | 0.171736 | 60.251103 | 7.618558 | 4.425119 | 0.034676 | 2.351123 | 0.027025 | ... |
74 | gi|479146200|ref|NC_021012.1|_Roseburia_intestinalis_XB6B4_draft_genome | 4164855 | 42.672482 | 0.359937 | 23.847409 | 6.266336 | 2.391668 | 0.033230 | 0.248361 | 0.014694 | 2.757376 | 0.150661 | 1.965492 | 0.004826 | 0.032174 | 6.378757 | 0.004442 | 0.098370 | 2.753228 | 0.007107 | ... |
75 | gi|479150083|ref|NC_021013.1|_Ruminococcus_bromii_L2-63_draft_genome | 2231037 | 41.386539 | 0.051992 | 38.879768 | 0.047556 | 0.022769 | 0.082337 | 0.023218 | 182.899504 | 0.023173 | 0.020708 | 16.396425 | 0.002869 | 0.067457 | 0.078707 | 0.027610 | 2.018626 | 0.011429 | 5.198258 | ... |
76 | gi|479152295|ref|NC_021014.1|_Ruminococcus_sp._SR1/5_draft_genome | 3511612 | 44.185206 | 0.001908 | 25.412098 | 22.304670 | 5.153760 | 0.039753 | 0.104822 | 0.015805 | 2.357294 | 0.043939 | 9.986087 | 0.013071 | 25.855159 | 5.041477 | 0.006123 | 7.986434 | 0.023522 | 17.690851 | ... |
77 | gi|479155735|ref|NC_021015.1|_Ruminococcus_torques_L2-14_draft_genome | 3277778 | 40.925011 | 0.128135 | 0.289523 | 3.354955 | 0.135884 | 4.007978 | 0.244767 | 1.269324 | 0.087649 | 0.161510 | 1.494985 | 1.153321 | 0.136034 | 0.023125 | 1.424979 | 1.400510 | 0.011440 | 0.299283 | ... |
78 | gi|479158859|ref|NC_021016.1|_Butyrate-producing_bacterium_SSC/2,_complete_genome | 3050979 | 37.035063 | 0.000197 | 0.037266 | 0.401376 | 0.046411 | 0.021272 | 67.732277 | 0.022844 | 0.108096 | 2.742003 | 0.015569 | 0.408357 | 1.669215 | 0.008489 | 1.021428 | 0.023927 | 0.533234 | 40.619816 | ... |
79 | gi|479166807|ref|NC_021018.1|_Coprococcus_sp._ART55/1_draft_genome | 2888039 | 44.423638 | 8.261174 | 0.525956 | 0.639904 | 0.253942 | 13.438804 | 0.150928 | 5.407592 | 0.702719 | 200.052828 | 0.149684 | 0.062222 | 0.212460 | 18.317086 | 0.333511 | 0.027908 | 7.826584 | 0.008172 | ... |
80 | gi|479169109|ref|NC_021019.1|_Eubacterium_cylindroides_T2-87_draft_genome | 1661181 | 37.212020 | 0.021851 | 0.036299 | 339.690936 | 28.634851 | 12.522384 | 61.318552 | 0.085900 | 91.381234 | 55.923506 | 0.011076 | 40.906376 | 0.271732 | 0.082471 | 0.024200 | 11.245968 | 0.032266 | 3.328730 | ... |
81 | gi|479170689|ref|NC_021020.1|_Faecalibacterium_prausnitzii_SL3/3_draft_genome | 3165875 | 55.651029 | 9.043616 | 0.054265 | 0.041031 | 0.056350 | 10.609231 | 0.017499 | 0.251145 | 0.003348 | 0.320319 | 24.191079 | 0.002748 | 6.857365 | 0.035409 | 0.012287 | 4.609061 | 0.013581 | 1.728788 | ... |
82 | gi|479176048|ref|NC_021022.1|_Ruminococcus_obeum_A2-162_draft_genome | 3692226 | 42.487432 | 0.108714 | 0.456301 | 0.087697 | 3.153679 | 4.203277 | 0.020611 | 0.847114 | 5.312007 | 0.138640 | 1.288277 | 0.078921 | 2.743050 | 1.248036 | 0.088888 | 0.020286 | 7.441810 | 0.283456 | ... |
83 | gi|479185170|ref|NC_021030.1|_Alistipes_shahii_WAL_8301_draft_genome | 3649672 | 57.557501 | 0.000000 | 2.814596 | 16.614906 | 0.015207 | 22.828005 | 10.467922 | 24.805938 | 6.160125 | 0.504611 | 2.182744 | 0.000000 | 18.295734 | 25.054296 | 5.339841 | 2.237293 | 82.427440 | 15.857162 | ... |
84 | gi|479199283|ref|NC_021039.1|_Ruminococcus_champanellensis_18P13,_complete_genome | 2513381 | 53.449915 | 0.000000 | 9.809179 | 27.231369 | 64.699847 | 0.000000 | 2.868050 | 68.811408 | 57.388161 | 0.000000 | 3.937807 | 32.995413 | 36.481557 | 79.479359 | 0.000000 | 20.977055 | 0.000000 | 7.961562 | ... |
85 | gi|479210985|ref|NC_021043.1|_Eubacterium_siraeum_V10Sc8a_draft_genome | 2779231 | 45.130577 | 0.941938 | 0.117908 | 8.146078 | 0.001835 | 10.130862 | 0.515820 | 1.622407 | 6.404900 | 0.003958 | 5.388973 | 0.000072 | 6.540791 | 20.618883 | 0.011478 | 0.006261 | 2.906921 | 0.022236 | ... |
86 | gi|479336697|ref|NC_021047.1|_Clostridium_cf._saccharolyticum_K10,_complete_genome | 3608868 | 50.280060 | 6.921766 | 0.118788 | 0.031560 | 0.017706 | 1.450046 | 0.909062 | 1.356658 | 0.019563 | 0.015351 | 1.105986 | 0.001385 | 1.410896 | 0.041037 | 4.643147 | 0.015129 | 0.009255 | 0.016570 | ... |
87 | gi|482887500|ref|NC_021083.1|_Mycoplasma_putrefaciens_Mput9231,_complete_genome | 859987 | 26.962035 | 464.274514 | 0.001395 | 0.000000 | 0.000000 | 0.000000 | 0.026628 | 0.000000 | 0.004651 | 0.000000 | 0.000465 | 0.000000 | 0.000930 | 0.000000 | 0.026279 | 0.000465 | 0.000000 | 0.001395 | ... |
88 | gi|50364815|ref|NC_006055.1|_Mesoplasma_florum_L1_chromosome,_complete_genome | 793224 | 27.020489 | 0.015128 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000882 | 0.000000 | 0.000252 | 0.000000 | 0.001513 | 0.000000 | 0.000000 | 0.000000 | 641.218437 | 0.002395 | 0.000000 | 48.417501 | ... |
89 | gi|507383177|ref|NC_021284.1|_Spiroplasma_syrphidicola_EA-1,_complete_genome | 1107344 | 29.201043 | 9.895640 | 45.656631 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 21.572177 | 94.898420 | 0.000000 | 4.032307 | 15.019934 | 46.395752 | 0.000000 | 55.299838 | ... |
90 | gi|509152352|ref|NC_021354.1|_Erysipelothrix_rhusiopathiae_SY1027,_complete_genome | 1752910 | 36.359996 | 71.125034 | 0.000000 | 81.884929 | 0.000000 | 0.000000 | 10.437782 | 51.018580 | 0.000000 | 0.000000 | 3.883756 | 51.317590 | 0.000000 | 0.000000 | 6.823512 | 17.525100 | 0.000000 | 10.277048 | ... |
91 | gi|51593942|ref|NC_006154.1|_Yersinia_pseudotuberculosis_IP_32953_plasmid_pYptb32953,_complete_sequence | 4840898 | 47.550434 | 0.000165 | 0.000124 | 10.096782 | 0.027226 | 20.300710 | 0.893422 | 52.280274 | 43.191562 | 7.913370 | 8.789918 | 0.000000 | 23.646292 | 82.414173 | 0.000000 | 3.677454 | 93.057231 | 81.791286 | ... |
92 | gi|52421214|ref|NC_006297.1|_Bacteroides_fragilis_YCH46_plasmid_pBFY46,_complete_sequence | 5310990 | 43.204299 | 0.004236 | 0.036621 | 0.020994 | 7.084111 | 0.036189 | 5.280692 | 0.035172 | 0.010036 | 0.029166 | 0.008944 | 0.017925 | 0.026059 | 0.034663 | 0.031707 | 0.019676 | 8.151100 | 0.023385 | ... |
93 | gi|525905724|ref|NC_021832.1|_Spiroplasma_taiwanense_CT-1_plasmid,_complete_sequence | 1086278 | 23.864609 | 153.113931 | 0.000000 | 0.000000 | 0.000736 | 0.000000 | 0.000092 | 0.000000 | 0.000000 | 0.000000 | 393.414398 | 0.000000 | 1.520760 | 0.000000 | 0.063335 | 0.103380 | 0.000000 | 0.008561 | ... |
94 | gi|525908085|ref|NC_021833.1|_Spiroplasma_diminutum_CUAS-1,_complete_genome | 945296 | 25.459115 | 14.293792 | 0.000000 | 0.000000 | 1.705256 | 0.000000 | 0.504073 | 0.000000 | 0.000000 | 0.000000 | 0.459842 | 0.000000 | 0.000846 | 0.000000 | 205.691400 | 359.983062 | 0.000000 | 30.759096 | ... |
95 | gi|56899872|ref|NC_006578.1|_Bacillus_thuringiensis_serovar_konkukian_str._97-27_plasmid_pBT9727,_complete_sequence | 5314793 | 35.365234 | 0.075148 | 30.851012 | 0.000000 | 0.000000 | 0.000000 | 0.627784 | 0.000000 | 2.591165 | 0.066023 | 49.868467 | 6.052745 | 0.000000 | 0.104895 | 31.578130 | 1.318958 | 0.000000 | 9.535317 | ... |
96 | gi|58036264|ref|NC_004307.2|_Bifidobacterium_longum_NCC2705_chromosome,_complete_genome | 2260266 | 60.127348 | 4.988175 | 78.687835 | 0.000000 | 0.002301 | 0.000000 | 1.085257 | 0.000000 | 0.000000 | 0.000354 | 0.000000 | 73.286725 | 1.480780 | 0.000000 | 18.466479 | 0.000265 | 0.000000 | 1.121622 | ... |
97 | gi|67078390|ref|NC_007107.1|_Bacillus_cereus_E33L_plasmid_pE33L9,_complete_sequence | 5843235 | 35.127203 | 0.980713 | 7.957240 | 0.000000 | 0.000000 | 0.000000 | 8.273067 | 0.000000 | 0.707148 | 0.873528 | 12.235221 | 79.147808 | 0.000000 | 1.425578 | 3.252639 | 17.372915 | 0.000000 | 26.548587 | ... |
98 | gi|72384244|ref|NC_007337.1|_Ralstonia_eutropha_JMP134_plasmid_1,_complete_sequence | 7255290 | 64.433400 | 0.000000 | 0.000000 | 0.000000 | 4.537080 | 1.784841 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 1.329997 | 1.487531 | 0.233536 | 0.605675 | 0.000000 | 0.000000 | 0.000662 | 0.000000 | ... |
99 | gi|83588874|ref|NC_007644.1|_Moorella_thermoacetica_ATCC_39073_chromosome,_complete_genome | 2628784 | 55.791537 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 1.542444 | 0.216829 | 0.636484 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | ... |
100 | gi|94972398|ref|NC_008014.1|_Lawsonia_intracellularis_PHE/MN1-00_plasmid_3,_complete_sequence | 1719014 | 33.081580 | 6.155510 | 134.758504 | 0.000000 | 0.000000 | 0.000000 | 1.142259 | 0.000000 | 0.952265 | 0.000000 | 8.161525 | 145.028864 | 0.000000 | 0.000000 | 36.059619 | 201.840347 | 9.520143 | 0.000000 | ... |
101 rows × 195 columns
print refcov2b.columns[99]
print refcov2b.columns[98]
print refcov2b.columns[3]
print refcov2b.columns[2]
percentage_covered_sample_Sample1006_sorted_R1_seed0_CPUs42 cov_mean_sample_Sample983_sorted_R1_seed0_CPUs42 cov_mean_sample_Sample1006_sorted_R1_seed0_CPUs42 GC
ax = refcov2b.ix[:, 3:98].plot(legend=False, title='Mock2b cov per sample')
ax.set_xlabel("genomes")
ax.set_ylabel("x fold coverage")
<matplotlib.text.Text at 0xb898050>
ax = refcov2b.ix[:, 3:98].sum(axis=1).plot(kind='bar', title="Mock2b sum sample cov per genome")
ax.set_xlabel("genomes")
ax.set_ylabel("x fold coverage")
<matplotlib.text.Text at 0x10733810>
ax = refcov2b.ix[:, 3:98].sum(axis=1).plot(logy=True, title="Mock2b sum sample cov per genome")
ax.set_xlabel("genomes")
ax.set_ylabel("x fold coverage")
<matplotlib.text.Text at 0x12444450>
ccount1 = pd.read_csv("NewMock1/out_41/map/contig_count_per_genome_4f4685e.tsv", sep="\t").sort("contig").reset_index(drop=True)
ccount1.head()
contig | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence | unamb_read_count_gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome | unamb_read_count_gi|324959701|ref|NC_015166.1|_Bacteroides_salanitronis_DSM_18170_plasmid_pBACSA03,_complete_sequence | unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome | unamb_read_count_gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome | unamb_read_count_gi|312132275|ref|NC_014656.1|_Bifidobacterium_longum_subsp._longum_BBMN68_chromosome,_complete_genome | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome | unamb_read_count_gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome | unamb_read_count_gi|116334879|ref|NC_008499.1|_Lactobacillus_brevis_ATCC_367_plasmid_2,_complete_sequence | unamb_read_count_gi|187734516|ref|NC_010655.1|_Akkermansia_muciniphila_ATCC_BAA-835_chromosome,_complete_genome | unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome | unamb_read_count_gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | contig-0 | 84784 | 20659 | 7106 | 7787 | 10698 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... |
1 | contig-1 | 0 | 0 | 0 | 35652 | 49827 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... |
2 | contig-10 | 120136 | 27680 | 10211 | 9034 | 13313 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... |
3 | contig-100 | 69440 | 17246 | 6106 | 6514 | 9219 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... |
4 | contig-1000 | 0 | 0 | 0 | 78 | 125 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ... |
5 rows × 41 columns
print ccount1.columns[1]
print ccount1.columns[20]
print ccount1.columns[21]
unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome amb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome
ccount1.ix[:, 1:21].idxmax(axis=1)
0 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 1 unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome 2 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 3 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 4 unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome 5 unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome 6 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 7 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 8 unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome 9 unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome 10 unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome 11 unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome 12 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 13 unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome 14 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome ... 6614 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 6615 unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome 6616 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 6617 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 6618 unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome 6619 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 6620 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 6621 unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome 6622 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 6623 unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome 6624 unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome 6625 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 6626 unamb_read_count_gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence 6627 unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome 6628 unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome Length: 6629, dtype: object
cinfo1 = pd.read_csv("NewMock1/out_41/map/Sorted_Sample1006_R1_seed0_CPUs42.fasta.gz/bowtie2/asm_pair-smds.coverage.percontig", sep="\t").sort("contig").reset_index(drop=True)
pd.concat([cinfo1.loc[ccount1.ix[:, 1:21].sum(axis=1) > 1000].ix[:, 1], ccount1.loc[ccount1.ix[:, 1:21].sum(axis=1) > 1000].ix[:, 1:21].idxmax(axis=1)], axis=1)
0 | 1 | |
---|---|---|
0 | 983 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
1 | 4122 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
2 | 2437 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
3 | 1088 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
5 | 167 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
6 | 278 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
7 | 383 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
10 | 1175 | unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome |
12 | 1093 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
14 | 3199 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
15 | 318 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
16 | 1348 | unamb_read_count_gi|116334879|ref|NC_008499.1|_Lactobacillus_brevis_ATCC_367_plasmid_2,_complete_sequence |
18 | 1122 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
19 | 903066 | unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome |
20 | 85971 | unamb_read_count_gi|324959701|ref|NC_015166.1|_Bacteroides_salanitronis_DSM_18170_plasmid_pBACSA03,_complete_sequence |
21 | 12266 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
23 | 1744 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
24 | 303 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
25 | 1925 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
26 | 1234 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
27 | 3107 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
28 | 14204 | unamb_read_count_gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome |
30 | 794 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
31 | 521 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
32 | 1754 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
34 | 967 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
35 | 1220 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
36 | 1314 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
37 | 897 | unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome |
38 | 1213 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
39 | 711 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
40 | 289 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
42 | 1795 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
43 | 96307 | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome |
44 | 5154 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
46 | 605 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
47 | 1390 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
48 | 914 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
49 | 830 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
50 | 733 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
51 | 2132 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
52 | 1702 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
53 | 200500 | unamb_read_count_gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome |
55 | 1121 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
56 | 1355 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
57 | 305 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
58 | 477 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
59 | 961 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
60 | 943 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
61 | 1222 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
62 | 1355 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
63 | 2620 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
64 | 969 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
65 | 600 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
67 | 412 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
68 | 231178 | unamb_read_count_gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome |
69 | 715 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
70 | 1228 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
71 | 2395 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
72 | 5836 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
73 | 2664 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
74 | 220 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
75 | 1462 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
76 | 4865 | unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome |
77 | 353 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
78 | 1289 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
79 | 195157 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
80 | 2254 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
81 | 2922 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
82 | 326 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
83 | 302 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
84 | 2488 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
85 | 2438 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
86 | 735 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
87 | 1608 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
88 | 24734 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
89 | 1621 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
90 | 947 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
91 | 1809 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
92 | 692 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
93 | 314 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
94 | 617 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
95 | 628 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
96 | 3763 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
97 | 5673 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
98 | 507496 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
99 | 820 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
100 | 426 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
101 | 933 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
102 | 1083 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
103 | 2054 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
104 | 1166 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
105 | 3060 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
106 | 1479 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
107 | 689 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
108 | 5167 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
109 | 1363 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
110 | 776 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
111 | 838 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
112 | 381 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
113 | 1006 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
114 | 237 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
115 | 2548 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
116 | 326 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
117 | 2252 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
118 | 1581 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
119 | 885 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
120 | 1526 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
121 | 1688 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
122 | 2099 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
123 | 1516 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
124 | 2596 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
126 | 338 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
127 | 402 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
128 | 3404 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
129 | 1987 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
130 | 3878 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
131 | 512436 | unamb_read_count_gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome |
134 | 5758 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
135 | 447 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
137 | 1325 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
138 | 2108 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
139 | 1599 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
140 | 1190 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
141 | 1762 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
142 | 1501 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
143 | 1631 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
144 | 924 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
145 | 412 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
147 | 2032 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
148 | 2108 | unamb_read_count_gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome |
149 | 1236 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
150 | 1288 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
151 | 1599 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
152 | 3582 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
154 | 308 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
155 | 627 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
156 | 1430 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
158 | 786 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
159 | 1405 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
161 | 302 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
162 | 1341 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
163 | 4181 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
164 | 798 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
165 | 1844 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
166 | 1083 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
167 | 787 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
168 | 759 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
169 | 977 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
170 | 1966 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
171 | 1068 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
172 | 4719 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
173 | 365 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
174 | 2275 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
175 | 1666 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
176 | 851 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
177 | 3280 | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome |
178 | 896 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
179 | 2077 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
180 | 3721 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
181 | 2717 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
182 | 6142 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
183 | 427 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
184 | 3324 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
185 | 3852 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
186 | 1962 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
187 | 1994 | unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome |
188 | 1132 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
189 | 1316 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
190 | 463 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
192 | 4748 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome |
193 | 2344 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
194 | 707 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
195 | 1213 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
196 | 1126 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
197 | 410 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
198 | 1394 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
199 | 271 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
200 | 431 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
202 | 269 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
203 | 2506 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
204 | 7893 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
209 | 1666 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
210 | 869 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
211 | 834 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
212 | 1662 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
213 | 2319 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
214 | 1725 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
215 | 398 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
216 | 31034 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
217 | 8258 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
218 | 1325 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
219 | 1270 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
220 | 1873 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
221 | 1473 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
222 | 1288 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
223 | 1880 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
225 | 650 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
227 | 64212 | unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome |
228 | 1378 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
229 | 5611 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
230 | 437 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
231 | 866 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
232 | 2033 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
233 | 1698 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
234 | 1254 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
235 | 671 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
236 | 2728 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
238 | 624 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
240 | 544 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
241 | 449 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
242 | 2073 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
243 | 5531 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
244 | 9913 | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome |
245 | 1860 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
246 | 1661 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
247 | 1357 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
248 | 1073 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
249 | 1517 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
250 | 327 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
251 | 996 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
252 | 609 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
253 | 167 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
254 | 1648 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
256 | 1661 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
259 | 2475 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
260 | 453 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
261 | 1034 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
262 | 2726 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
263 | 1629 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
264 | 7761 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome |
265 | 787 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
266 | 8661 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
267 | 2719 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
268 | 2254 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
269 | 1098 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
271 | 260 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
272 | 570 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
273 | 791 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
274 | 552 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
275 | 714344 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
277 | 3146 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
278 | 977 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
279 | 913 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
280 | 3087 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
281 | 656 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
282 | 1239 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
283 | 336 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
284 | 1545 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
285 | 1059 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
286 | 1056 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
287 | 1767 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
288 | 312 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
289 | 422 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
290 | 505 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome |
291 | 1493 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
293 | 3503 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
294 | 1342 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
295 | 1421 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
296 | 1431 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
297 | 2206 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
299 | 7280 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
301 | 11391 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
302 | 1922 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
303 | 294 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
304 | 1369 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
305 | 1309 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
306 | 704 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
307 | 1219 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
308 | 1232 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
309 | 640 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
310 | 1063 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
311 | 924 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
312 | 1402 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
313 | 728 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
314 | 4030 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
315 | 1184 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
316 | 230 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
317 | 683 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
318 | 2207 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
319 | 711 | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome |
320 | 881 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
321 | 2613 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
322 | 6795 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
323 | 1388 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
324 | 2162 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
326 | 1973 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
328 | 5382 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
329 | 739 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
330 | 1081 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
331 | 2980 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
332 | 978 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
333 | 1234 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
334 | 1891 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
335 | 4883 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome |
338 | 170 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
339 | 883 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
341 | 1167 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
342 | 1815 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
343 | 1277 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
344 | 1457 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
345 | 4405 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
346 | 1225 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
347 | 365 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
348 | 4084 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
349 | 1580 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
350 | 708 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
352 | 998 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
353 | 281 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
354 | 673 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
355 | 315 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
356 | 1316 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
357 | 852 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
358 | 995 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
359 | 1558 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
360 | 2053 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
361 | 3082 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
362 | 1344 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
364 | 1342 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
365 | 2006 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
366 | 1828 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
367 | 669 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
368 | 1248 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
369 | 452 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
370 | 1154 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
371 | 1435 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
373 | 2351 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
374 | 2003 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
375 | 409 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
376 | 594 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
379 | 5841 | unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome |
380 | 3118 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
381 | 287 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
382 | 1541 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
383 | 912 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
385 | 13235 | unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome |
387 | 1517 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
388 | 6388 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
389 | 633 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
391 | 506 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
392 | 621 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
393 | 1338 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
395 | 11816 | unamb_read_count_gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence |
396 | 2789 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
397 | 1085 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
398 | 1772 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
399 | 1938 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
400 | 993 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
401 | 1034 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
402 | 1478 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
404 | 2710 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
405 | 4896 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
406 | 1219 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
408 | 3290 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
409 | 774 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
410 | 905 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
411 | 1805 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
412 | 2898 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
413 | 297 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
414 | 1347 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
415 | 416 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
416 | 1508 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
417 | 2980 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
418 | 4812 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
421 | 2238 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
422 | 5338 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
423 | 719 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
424 | 556 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
425 | 646 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
426 | 1240 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
427 | 4392 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
428 | 1103 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
430 | 1521 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
431 | 1137 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
433 | 2176 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
435 | 507 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
436 | 511 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
437 | 141601 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome |
438 | 920 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
439 | 9886 | unamb_read_count_gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome |
440 | 1177 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
443 | 1379 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
444 | 1085 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
445 | 1351 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
446 | 1015 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
447 | 711 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
448 | 984 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
449 | 2063 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
450 | 431 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
451 | 1129 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
452 | 476 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
453 | 1391 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
454 | 1552 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
455 | 280 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
456 | 2319 | unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome |
457 | 1180 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
460 | 850 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
461 | 2147 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
462 | 1505 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
463 | 2093 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
464 | 2106 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
465 | 1125 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
466 | 1250 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
467 | 1109 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
468 | 1706 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
469 | 2647 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
470 | 580 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
471 | 1237 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
472 | 1761 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
473 | 296 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
475 | 13778 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
476 | 252 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
478 | 376 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
480 | 251 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
481 | 60597 | unamb_read_count_gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence |
482 | 1549 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
483 | 1329 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
484 | 836 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
485 | 1141 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
487 | 733 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
488 | 7065 | unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome |
489 | 711 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
490 | 370 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
491 | 661 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
492 | 1224 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
493 | 1311 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
494 | 237 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
495 | 3189 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
497 | 11145 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
498 | 1589 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
500 | 261 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
501 | 3044 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
502 | 1773 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
503 | 30521 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
505 | 3280 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
508 | 1561 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
509 | 2074 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
510 | 1360 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
511 | 2519 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
512 | 3122 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
513 | 505 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
514 | 13378 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome |
515 | 507 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
516 | 2440 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
517 | 3202 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
518 | 827 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
519 | 3030 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
520 | 326 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
521 | 4051 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
522 | 976 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
523 | 6383 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
524 | 605 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
525 | 1507 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
527 | 3417 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
528 | 3113 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
529 | 312 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
531 | 968 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
532 | 1891 | unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome |
533 | 14516 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
534 | 673 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
535 | 1314 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
536 | 1567 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
537 | 1198 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
538 | 2721 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
539 | 276 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
540 | 271 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
541 | 1428 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
542 | 4134 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
543 | 529 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
544 | 1784 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
545 | 538 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
546 | 1573 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
547 | 1249 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
548 | 1571 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
549 | 7726 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
550 | 4102 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
551 | 218 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
552 | 2457 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
553 | 834 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
554 | 2876 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
555 | 3149 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
556 | 3902 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
557 | 1600 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
558 | 992 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
560 | 1324 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
561 | 2094 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
562 | 3383 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
563 | 380 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
564 | 1941 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
565 | 816 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
566 | 369 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
568 | 14825 | unamb_read_count_gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome |
569 | 428 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
570 | 4221 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
571 | 3270 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
572 | 554 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
573 | 1031 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
574 | 1979 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
575 | 2328 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
576 | 2154 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
... | ... |
5653 rows × 2 columns
a = pd.concat([cinfo1.ix[:, 1], ccount1.ix[:, 1:21].idxmax(axis=1)], axis=1)
a.columns=["length", "genome"]
a
length | genome | |
---|---|---|
0 | 983 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
1 | 4122 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
2 | 2437 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
3 | 1088 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
4 | 1025 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
5 | 167 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
6 | 278 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
7 | 383 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
8 | 846 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
9 | 1522 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
10 | 1175 | unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome |
11 | 670 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
12 | 1093 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
13 | 174 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
14 | 3199 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
15 | 318 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
16 | 1348 | unamb_read_count_gi|116334879|ref|NC_008499.1|_Lactobacillus_brevis_ATCC_367_plasmid_2,_complete_sequence |
17 | 1417 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
18 | 1122 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
19 | 903066 | unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome |
20 | 85971 | unamb_read_count_gi|324959701|ref|NC_015166.1|_Bacteroides_salanitronis_DSM_18170_plasmid_pBACSA03,_complete_sequence |
21 | 12266 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
22 | 1231 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
23 | 1744 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
24 | 303 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
25 | 1925 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
26 | 1234 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
27 | 3107 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
28 | 14204 | unamb_read_count_gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome |
29 | 423 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
30 | 794 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
31 | 521 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
32 | 1754 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
33 | 984 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
34 | 967 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
35 | 1220 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
36 | 1314 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
37 | 897 | unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome |
38 | 1213 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
39 | 711 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
40 | 289 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
41 | 1190 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
42 | 1795 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
43 | 96307 | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome |
44 | 5154 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
45 | 862 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
46 | 605 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
47 | 1390 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
48 | 914 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
49 | 830 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
50 | 733 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
51 | 2132 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
52 | 1702 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
53 | 200500 | unamb_read_count_gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome |
54 | 1522 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
55 | 1121 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
56 | 1355 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
57 | 305 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
58 | 477 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
59 | 961 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
60 | 943 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
61 | 1222 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
62 | 1355 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
63 | 2620 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
64 | 969 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
65 | 600 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
66 | 2108 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
67 | 412 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
68 | 231178 | unamb_read_count_gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome |
69 | 715 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
70 | 1228 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
71 | 2395 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
72 | 5836 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
73 | 2664 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
74 | 220 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
75 | 1462 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
76 | 4865 | unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome |
77 | 353 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
78 | 1289 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
79 | 195157 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
80 | 2254 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
81 | 2922 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
82 | 326 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
83 | 302 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
84 | 2488 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
85 | 2438 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
86 | 735 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
87 | 1608 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
88 | 24734 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
89 | 1621 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
90 | 947 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
91 | 1809 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
92 | 692 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
93 | 314 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
94 | 617 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
95 | 628 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
96 | 3763 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
97 | 5673 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
98 | 507496 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
99 | 820 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
100 | 426 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
101 | 933 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
102 | 1083 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
103 | 2054 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
104 | 1166 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
105 | 3060 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
106 | 1479 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
107 | 689 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
108 | 5167 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
109 | 1363 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
110 | 776 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
111 | 838 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
112 | 381 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
113 | 1006 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
114 | 237 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
115 | 2548 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
116 | 326 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
117 | 2252 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
118 | 1581 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
119 | 885 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
120 | 1526 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
121 | 1688 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
122 | 2099 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
123 | 1516 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
124 | 2596 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
125 | 1029 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
126 | 338 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
127 | 402 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
128 | 3404 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
129 | 1987 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
130 | 3878 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
131 | 512436 | unamb_read_count_gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome |
132 | 2293 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
133 | 912 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
134 | 5758 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
135 | 447 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
136 | 172 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
137 | 1325 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
138 | 2108 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
139 | 1599 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
140 | 1190 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
141 | 1762 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
142 | 1501 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
143 | 1631 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
144 | 924 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
145 | 412 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
146 | 1344 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
147 | 2032 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
148 | 2108 | unamb_read_count_gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome |
149 | 1236 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
150 | 1288 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
151 | 1599 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
152 | 3582 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
153 | 1287 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
154 | 308 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
155 | 627 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
156 | 1430 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
157 | 1838 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
158 | 786 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
159 | 1405 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
160 | 1125 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
161 | 302 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
162 | 1341 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
163 | 4181 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
164 | 798 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
165 | 1844 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
166 | 1083 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
167 | 787 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
168 | 759 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
169 | 977 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
170 | 1966 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
171 | 1068 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
172 | 4719 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
173 | 365 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
174 | 2275 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
175 | 1666 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
176 | 851 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
177 | 3280 | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome |
178 | 896 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
179 | 2077 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
180 | 3721 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
181 | 2717 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
182 | 6142 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
183 | 427 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
184 | 3324 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
185 | 3852 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
186 | 1962 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
187 | 1994 | unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome |
188 | 1132 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
189 | 1316 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
190 | 463 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
191 | 968 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
192 | 4748 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome |
193 | 2344 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
194 | 707 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
195 | 1213 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
196 | 1126 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
197 | 410 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
198 | 1394 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
199 | 271 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
200 | 431 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
201 | 1574 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
202 | 269 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
203 | 2506 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
204 | 7893 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
205 | 738 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
206 | 774 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
207 | 1118 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
208 | 1062982 | unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome |
209 | 1666 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
210 | 869 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
211 | 834 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
212 | 1662 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
213 | 2319 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
214 | 1725 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
215 | 398 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
216 | 31034 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
217 | 8258 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
218 | 1325 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
219 | 1270 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
220 | 1873 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
221 | 1473 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
222 | 1288 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
223 | 1880 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
224 | 981 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
225 | 650 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
226 | 1440 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
227 | 64212 | unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome |
228 | 1378 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
229 | 5611 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
230 | 437 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
231 | 866 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
232 | 2033 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
233 | 1698 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
234 | 1254 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
235 | 671 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
236 | 2728 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
237 | 462 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
238 | 624 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
239 | 1604 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
240 | 544 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
241 | 449 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
242 | 2073 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
243 | 5531 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
244 | 9913 | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome |
245 | 1860 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
246 | 1661 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
247 | 1357 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
248 | 1073 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
249 | 1517 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
250 | 327 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
251 | 996 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
252 | 609 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
253 | 167 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
254 | 1648 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
255 | 612 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
256 | 1661 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
257 | 374 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
258 | 1163 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
259 | 2475 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
260 | 453 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
261 | 1034 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
262 | 2726 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
263 | 1629 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
264 | 7761 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome |
265 | 787 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
266 | 8661 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
267 | 2719 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
268 | 2254 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
269 | 1098 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
270 | 1021 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
271 | 260 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
272 | 570 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
273 | 791 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
274 | 552 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
275 | 714344 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
276 | 1973 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
277 | 3146 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
278 | 977 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
279 | 913 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
280 | 3087 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
281 | 656 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
282 | 1239 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
283 | 336 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
284 | 1545 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
285 | 1059 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
286 | 1056 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
287 | 1767 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
288 | 312 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
289 | 422 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
290 | 505 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome |
291 | 1493 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
292 | 2415 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
293 | 3503 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
294 | 1342 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
295 | 1421 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
296 | 1431 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
297 | 2206 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
298 | 1012 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
299 | 7280 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
300 | 312 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
301 | 11391 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
302 | 1922 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
303 | 294 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
304 | 1369 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
305 | 1309 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
306 | 704 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
307 | 1219 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
308 | 1232 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
309 | 640 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
310 | 1063 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
311 | 924 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
312 | 1402 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
313 | 728 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
314 | 4030 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
315 | 1184 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
316 | 230 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
317 | 683 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
318 | 2207 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
319 | 711 | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome |
320 | 881 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
321 | 2613 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
322 | 6795 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
323 | 1388 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
324 | 2162 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
325 | 655 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
326 | 1973 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
327 | 1745 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
328 | 5382 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
329 | 739 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
330 | 1081 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
331 | 2980 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
332 | 978 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
333 | 1234 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
334 | 1891 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
335 | 4883 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome |
336 | 1235 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
337 | 1062982 | unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome |
338 | 170 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
339 | 883 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
340 | 1670 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
341 | 1167 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
342 | 1815 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
343 | 1277 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
344 | 1457 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
345 | 4405 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
346 | 1225 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
347 | 365 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
348 | 4084 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
349 | 1580 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
350 | 708 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
351 | 176 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
352 | 998 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
353 | 281 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
354 | 673 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
355 | 315 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
356 | 1316 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
357 | 852 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
358 | 995 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
359 | 1558 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
360 | 2053 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
361 | 3082 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
362 | 1344 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
363 | 2766 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
364 | 1342 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
365 | 2006 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
366 | 1828 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
367 | 669 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
368 | 1248 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
369 | 452 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
370 | 1154 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
371 | 1435 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
372 | 825006 | unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome |
373 | 2351 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
374 | 2003 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
375 | 409 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
376 | 594 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
377 | 1166 | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome |
378 | 187 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
379 | 5841 | unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome |
380 | 3118 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
381 | 287 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
382 | 1541 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
383 | 912 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
384 | 169 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
385 | 13235 | unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome |
386 | 1339 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
387 | 1517 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
388 | 6388 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
389 | 633 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
390 | 1273 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
391 | 506 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
392 | 621 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
393 | 1338 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
394 | 1423 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
395 | 11816 | unamb_read_count_gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence |
396 | 2789 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
397 | 1085 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
398 | 1772 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
399 | 1938 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
400 | 993 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
401 | 1034 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
402 | 1478 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
403 | 325 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
404 | 2710 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
405 | 4896 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
406 | 1219 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
407 | 466 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
408 | 3290 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
409 | 774 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
410 | 905 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
411 | 1805 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
412 | 2898 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
413 | 297 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
414 | 1347 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
415 | 416 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
416 | 1508 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
417 | 2980 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
418 | 4812 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
419 | 1478 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
420 | 179 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
421 | 2238 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
422 | 5338 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
423 | 719 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
424 | 556 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
425 | 646 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
426 | 1240 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
427 | 4392 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
428 | 1103 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
429 | 476 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
430 | 1521 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
431 | 1137 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
432 | 816 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
433 | 2176 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
434 | 1027 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
435 | 507 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
436 | 511 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
437 | 141601 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome |
438 | 920 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
439 | 9886 | unamb_read_count_gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome |
440 | 1177 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
441 | 1398 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
442 | 761 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
443 | 1379 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
444 | 1085 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome |
445 | 1351 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
446 | 1015 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
447 | 711 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
448 | 984 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
449 | 2063 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
450 | 431 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
451 | 1129 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
452 | 476 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
453 | 1391 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
454 | 1552 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
455 | 280 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
456 | 2319 | unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome |
457 | 1180 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
458 | 6385 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
459 | 1456 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
460 | 850 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
461 | 2147 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
462 | 1505 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
463 | 2093 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
464 | 2106 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
465 | 1125 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
466 | 1250 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
467 | 1109 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
468 | 1706 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
469 | 2647 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome |
470 | 580 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
471 | 1237 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
472 | 1761 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
473 | 296 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
474 | 341 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
475 | 13778 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
476 | 252 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
477 | 1587 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome |
478 | 376 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
479 | 1730 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
480 | 251 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
481 | 60597 | unamb_read_count_gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence |
482 | 1549 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
483 | 1329 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
484 | 836 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
485 | 1141 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
486 | 183 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
487 | 733 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome |
488 | 7065 | unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome |
489 | 711 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
490 | 370 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
491 | 661 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
492 | 1224 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
493 | 1311 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
494 | 237 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
495 | 3189 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
496 | 1613 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
497 | 11145 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence |
498 | 1589 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome |
499 | 181 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome |
... | ... |
6629 rows × 2 columns
a.groupby("genome").sum().sort("length")
length | |
---|---|
genome | |
unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome | 1213176 |
unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome | 1304172 |
unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome | 1602310 |
unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome | 1640880 |
unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome | 1642780 |
unamb_read_count_gi|312132275|ref|NC_014656.1|_Bifidobacterium_longum_subsp._longum_BBMN68_chromosome,_complete_genome | 2245374 |
unamb_read_count_gi|116334879|ref|NC_008499.1|_Lactobacillus_brevis_ATCC_367_plasmid_2,_complete_sequence | 2313144 |
unamb_read_count_gi|187734516|ref|NC_010655.1|_Akkermansia_muciniphila_ATCC_BAA-835_chromosome,_complete_genome | 2645199 |
unamb_read_count_gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence | 3023970 |
unamb_read_count_gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome | 3360627 |
unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome | 3568883 |
unamb_read_count_gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome | 3978994 |
unamb_read_count_gi|324959701|ref|NC_015166.1|_Bacteroides_salanitronis_DSM_18170_plasmid_pBACSA03,_complete_sequence | 4264771 |
unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome | 4359759 |
unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome | 4404521 |
unamb_read_count_gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome | 5008837 |
unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome | 5395955 |
unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome | 5779965 |
unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence | 6118550 |
unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome | 52162362 |
20 rows × 1 columns
ccount_new = pd.read_csv("NewMock1/fprau-bug/out_41/remap-nodup/contig_count_per_genome_4f4685e.tsv", sep="\t").sort("contig").reset_index(drop=True)
cinfo_new = pd.read_csv("NewMock1/fprau-bug/out_41/remap-nodup/Sorted_Sample1006_R1_seed0_CPUs42.fasta.gz/bowtie2/asm_pair-smds.coverage.percontig", sep="\t").sort("contig").reset_index(drop=True)
b = pd.concat([cinfo_new.ix[:, 1], ccount_new.ix[:, 1:21].idxmax(axis=1)], axis=1)
b.columns=["length", "genome"]
b.groupby("genome").sum().sort('length')
length | |
---|---|
genome | |
unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome | 1213176 |
unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome | 1304172 |
unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome | 1602310 |
unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome | 1640880 |
unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome | 1642780 |
unamb_read_count_gi|312132275|ref|NC_014656.1|_Bifidobacterium_longum_subsp._longum_BBMN68_chromosome,_complete_genome | 2245374 |
unamb_read_count_gi|116334879|ref|NC_008499.1|_Lactobacillus_brevis_ATCC_367_plasmid_2,_complete_sequence | 2313144 |
unamb_read_count_gi|187734516|ref|NC_010655.1|_Akkermansia_muciniphila_ATCC_BAA-835_chromosome,_complete_genome | 2645199 |
unamb_read_count_gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence | 3023970 |
unamb_read_count_gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome | 3360627 |
unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome | 3568883 |
unamb_read_count_gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome | 3978994 |
unamb_read_count_gi|324959701|ref|NC_015166.1|_Bacteroides_salanitronis_DSM_18170_plasmid_pBACSA03,_complete_sequence | 4264771 |
unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome | 4359759 |
unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome | 4404521 |
unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome | 4916242 |
unamb_read_count_gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome | 5008837 |
unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome | 5395955 |
unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome | 5779965 |
unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence | 6118550 |
20 rows × 1 columns
bb = b.groupby("genome").sum().sort()
bb.reset_index(inplace=True)
bb.sort("genome")
c = pd.concat([bb.sort("genome"), mgcov1.ix[0:19, 0:2]], axis=1)
c
c.columns = ["genome1", "sum_contigs", "genome2", "real_length"]
c["ratio"] = c.sum_contigs.div(c.real_length)
c[["genome1","ratio","sum_contigs","real_length"]].sort("ratio")
#c.sort("sum_contigs")
genome1 | ratio | sum_contigs | real_length | |
---|---|---|---|---|
2 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome | 0.233118 | 1304172 | 5594477 |
19 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome | 0.234205 | 1213176 | 5179971 |
15 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome | 0.294683 | 1602310 | 5437407 |
4 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome | 0.323666 | 1640880 | 5069678 |
1 | unamb_read_count_gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome | 0.970105 | 5008837 | 5163189 |
6 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence | 0.972217 | 6118550 | 6293399 |
8 | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome | 0.972707 | 4359759 | 4482087 |
5 | unamb_read_count_gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome | 0.974184 | 3360627 | 3449685 |
16 | unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome | 0.984974 | 1642780 | 1667841 |
13 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome | 0.986521 | 4404521 | 4464699 |
14 | unamb_read_count_gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence | 0.987417 | 3023970 | 3062505 |
0 | unamb_read_count_gi|116334879|ref|NC_008499.1|_Lactobacillus_brevis_ATCC_367_plasmid_2,_complete_sequence | 0.988427 | 2313144 | 2340228 |
10 | unamb_read_count_gi|324959701|ref|NC_015166.1|_Bacteroides_salanitronis_DSM_18170_plasmid_pBACSA03,_complete_sequence | 0.989813 | 4264771 | 4308663 |
7 | unamb_read_count_gi|312132275|ref|NC_014656.1|_Bifidobacterium_longum_subsp._longum_BBMN68_chromosome,_complete_genome | 0.990923 | 2245374 | 2265943 |
3 | unamb_read_count_gi|187734516|ref|NC_010655.1|_Akkermansia_muciniphila_ATCC_BAA-835_chromosome,_complete_genome | 0.992905 | 2645199 | 2664102 |
11 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome | 0.993530 | 3568883 | 3592125 |
9 | unamb_read_count_gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome | 0.995021 | 3978994 | 3998906 |
12 | unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome | 1.004250 | 5395955 | 5373121 |
18 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome | 1.245239 | 5779965 | 4641652 |
17 | unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome | 1.513495 | 4916242 | 3248271 |
20 rows × 4 columns
cinfo_new = pd.read_csv("NewMock1/fprau-bug/out_41/remap-nodup/Sorted_Sample1006_R1_seed0_CPUs42.fasta.gz/bowtie2/asm_pair-smds.coverage.percontig", sep="\t").sort("contig").reset_index(drop=True)
ccount_new = pd.read_csv("NewMock1/fprau-bug/out_41/remap-nodup/contig_count_per_genome_4f4685e.tsv", sep="\t").sort("contig").reset_index(drop=True)
#b = pd.concat([cinfo1.loc[ccount_new.ix[:, 1:21].sum(axis=1) > 1000].ix[:, 1], ccount_new.loc[ccount_new.ix[:, 1:21].sum(axis=1) > 1000].idxmax(axis=1)], axis=1)
b = pd.concat([cinfo_new.loc[ccount_new.ix[:, 1:21].sum(axis=1) > 1000].ix[:, 1], ccount_new.loc[ccount_new.ix[:, 1:21].sum(axis=1) > 1000].ix[:, 1:21].idxmax(axis=1)], axis=1)
b.columns=["length", "genome"]
bb = b.loc[b.length >= 1000].groupby("genome").sum().sort()
bb.reset_index(inplace=True)
bb.sort("genome")
c = pd.concat([bb.sort("genome"), mgcov1.ix[0:19, 0:2]], axis=1)
c
c.columns = ["genome1", "sum_contigs", "genome2", "real_length"]
c["ratio"] = c.sum_contigs.div(c.real_length)
c[["genome1","ratio","sum_contigs","real_length"]].sort("ratio")
genome1 | ratio | sum_contigs | real_length | |
---|---|---|---|---|
19 | unamb_read_count_gi|91209055|ref|NC_007946.1|Escherichia_coli_UTI89_chromosome+plasmid,complete_genome | 0.197716 | 1024162 | 5179971 |
2 | unamb_read_count_gi|15829254|ref|NC_002695.1|Escherichia_coli_O157:H7_str.Sakai_chromosome+plasmids,complete_genome | 0.206464 | 1155060 | 5594477 |
4 | unamb_read_count_gi|215485161|ref|NC_011601.1|Escherichia_coli_O127:H6_str.E2348/69_chromosome+plasmids,complete_genome | 0.241273 | 1223177 | 5069678 |
15 | unamb_read_count_gi|407479587|ref|NC_018658.1|Escherichia_coli_O104:H4_str._2011C-3493_chromosome+plasmids,complete_genome | 0.254657 | 1384673 | 5437407 |
1 | unamb_read_count_gi|150002608|ref|NC_009614.1|_Bacteroides_vulgatus_ATCC_8482_chromosome,_complete_genome | 0.969416 | 5005277 | 5163189 |
8 | unamb_read_count_gi|317054731|ref|NC_014833.1|_Ruminococcus_albus_7_chromosome,_complete_genome | 0.970865 | 4351501 | 4482087 |
6 | unamb_read_count_gi|29611500|ref|NC_004703.1|_Bacteroides_thetaiotaomicron_VPI-5482_plasmid_p5482,_complete_sequence | 0.971362 | 6113167 | 6293399 |
5 | unamb_read_count_gi|238922432|ref|NC_012781.1|_Eubacterium_rectale_ATCC_33656,_complete_genome | 0.971572 | 3351618 | 3449685 |
16 | unamb_read_count_gi|410023236|ref|NC_018937.1|_Helicobacter_pylori_Rif1_chromosome,_complete_genome | 0.983851 | 1640907 | 1667841 |
13 | unamb_read_count_gi|383843669|ref|NC_017179.1|_Clostridium_difficile_BI1,_complete_genome | 0.985494 | 4399934 | 4464699 |
14 | unamb_read_count_gi|397698507|ref|NC_018223.1|_Enterococcus_faecalis_D32_plasmid_EFD32pB,_complete_sequence | 0.986512 | 3021197 | 3062505 |
0 | unamb_read_count_gi|116334879|ref|NC_008499.1|_Lactobacillus_brevis_ATCC_367_plasmid_2,_complete_sequence | 0.988427 | 2313144 | 2340228 |
10 | unamb_read_count_gi|324959701|ref|NC_015166.1|_Bacteroides_salanitronis_DSM_18170_plasmid_pBACSA03,_complete_sequence | 0.989195 | 4262108 | 4308663 |
7 | unamb_read_count_gi|312132275|ref|NC_014656.1|_Bifidobacterium_longum_subsp._longum_BBMN68_chromosome,_complete_genome | 0.990517 | 2244454 | 2265943 |
11 | unamb_read_count_gi|347530298|ref|NC_015977.1|_Roseburia_hominis_A2-183_chromosome,_complete_genome | 0.992085 | 3563694 | 3592125 |
3 | unamb_read_count_gi|187734516|ref|NC_010655.1|_Akkermansia_muciniphila_ATCC_BAA-835_chromosome,_complete_genome | 0.992768 | 2644834 | 2664102 |
9 | unamb_read_count_gi|319899888|ref|NC_014933.1|_Bacteroides_helcogenes_P_36-108_chromosome,_complete_genome | 0.994664 | 3977569 | 3998906 |
12 | unamb_read_count_gi|375356399|ref|NC_016776.1|_Bacteroides_fragilis_638R,_complete_genome | 1.003710 | 5393053 | 5373121 |
18 | unamb_read_count_gi|556503834|ref|NC_000913.3|Escherichia_coli_str._K-12_substr._MG1655,complete_genome | 1.027622 | 4769863 | 4641652 |
17 | unamb_read_count_gi|479208076|ref|NC_021042.1|_Faecalibacterium_prausnitzii_L2-6,_complete_genome | 1.512671 | 4913566 | 3248271 |
20 rows × 4 columns