import sys
sys.path.append('code')
from melamed import *

!code/setup_cancer_data.sh

alterations = load_cancer_alteration_info()

setup_hprd('data_source/HPRD_Release9_062910/BINARY_PROTEIN_PROTEIN_INTERACTIONS.txt')

fantom()

load_mendelian_disease_info('mendelian', alterations)

run_network_score('mendelian', 1000)
run_network_score('mendelian_germline', 1000)

comorbidity_analysis('mendelian')

comorbidity_analysis('mendelian_germline')

figure_files('mendelian')