!head /Volumes/web/cnidarian/BioSys_mCpGbind_492643.fasta

!wc /Volumes/web/cnidarian/BioSys_mCpGbind_492643.fasta

!makeblastdb -in /Volumes/Bay3/Software/ncbi-blast-2.2.28\+/db/oyster_v9p.fa -out /Volumes/Bay3/Software/ncbi-blast-2.2.28\+/db/oyster_v9p -dbtype prot

!blastp -query /Volumes/web/cnidarian/BioSys_mCpGbind_492643.fasta -db /Volumes/Bay3/Software/ncbi-blast-2.2.28\+/db/oyster_v9p -out /Volumes/web/cnidarian/mCpG_BP_blastp_v9_out.txt -outfmt 6 -max_target_seqs 10

!head /Volumes/web/cnidarian/mCpG_BP_blastp_v9_out.txt

!wc /Volumes/web/cnidarian/mCpG_BP_blastp_v9_out.txt

!blastp -query /Volumes/web/cnidarian/BioSys_mCpGbind_492643.fasta -db /Volumes/Bay3/Software/ncbi-blast-2.2.28\+/db/oyster_v9p -out /Volumes/web/cnidarian/mCpG_BP_blastp_v9_out2.txt -evalue 1E-20 -outfmt 6 -max_target_seqs 10

!wc /Volumes/web/cnidarian/mCpG_BP_blastp_v9_out2.txt

#13 oyster sequences identified with 1E-20 cutoff
!head /Volumes/web/cnidarian/mCpG_BP_candidates.fa

#Batch Web CD search
!head /Volumes/web/cnidarian/mCpG_BP_candidates_CDhitdata.txt

!head /Volumes/web/cnidarian/TJGR_CCD_feature.txt

!head /Volumes/web/cnidarian/TJGR_CCD_dom_con_S_define.txt

!head /Volumes/web/cnidarian/TJGR_CCD_dom_con.txt

!wc /Volumes/web/cnidarian/TJGR_CpG_domain.csv