!head /Volumes/web/cnidarian/LT_L6_4000_C1q.fasta

!head /Volumes/web/cnidarian/LT_S7_4000_C1q.fasta

#This is in reverse order 3' to 5'. 
#The line marked C1q is the lean cDNA and the one marked Contig1S7cDNA is the siscowet cDNA 
#you see it misses some of the sequence present in the lean cDNA at about 3125 to 3145. 
#They are both being compared to the siscowet genomic sequence. 
!head /Volumes/web/cnidarian/LT_C1q_align.txt