%%bash
cd
mkdir practical_fmri
cd practical_fmri
git clone git://github.com/practical-neuroimaging/pna-notebooks.git
ls ~/practical_fmri/pna-notebooks

%%bash
cd
mkdir data
cd data
unzip ~/Downloads/ds105_trimmed.zip
ls ds105

%%bash
cd
mkdir code
cd code
mkdir datacheck

!cp ~/practical_fmri/pna-notebooks/checkhash.py ~/code/datacheck
!cp ~/practical_fmri/pna-notebooks/test_checkhash.py ~/code/datacheck

%%bash
# On OSX, Linux
export PYTHONPATH=~/code/datacheck:$PYTHONPATH

!nosetests ~/code/datacheck

%%bash
cd ~/code/datacheck
git init
git add *.py
git commit -m "Initial import of library code"

%%bash
cd
mkdir projects
cd projects
mkdir haxby2001
cd haxby2001
mkdir scripts
mkdir notebooks

!ls ~/projects/haxby2001

%%bash
cp ~/practical_fmri/pna-notebooks/openfmri.py ~/projects/haxby2001/scripts
cp ~/practical_fmri/pna-notebooks/test_openfmri.py ~/projects/haxby2001/scripts
cp ~/practical_fmri/pna-notebooks/check_openfmri.py ~/projects/haxby2001/scripts

%%bash
cd ~/projects/haxby2001
git init
git add .
git commit -m "Initial import of scripts"

%%bash
cd ~/projects/haxby2001
git log

!nosetests ~/projects/haxby2001/scripts

!python ~/projects/haxby2001/scripts/check_openfmri.py /home/mb312/data/ds105