#!/usr/bin/env python
# coding: utf-8

# ## Notebooks on Computational Biology Data
# 
# * [Hierarchical](./Hierarchical.ipynb) James Hensman, Magnus Rattray and Neil Lawrence. Work funded by the [Iterative Project](http://staffwww.dcs.shef.ac.uk/people/N.Lawrence/projects/iterative/).
# * [Checking Replicate Time Series Quality with GPy](./TomancakDataWithGPy.ipynb) Marta Milo and Neil Lawrence
# * [Visualizing Single Cell Data with the GP-LVM](./SingleCellDataWithGPy.ipynb) Max Zwiessele, Oliver Stegle and Neil Lawrence. Work funded by the [BioPreDyn Project](http://staffwww.dcs.shef.ac.uk/people/N.Lawrence/projects/biopredyn/) and is an ongoing collaboration with Florian Buettner.
# * [Spatio-temporal Model of Gene Expression in Drosophila Blastoderm Development](./SpatioTemporalGeneProteinDrosophila.ipynb) Mu Niu, Nicolas Durrande and Neil Lawrence. Work funded by the [BioPreDyn Project](http://staffwww.dcs.shef.ac.uk/people/N.Lawrence/projects/biopredyn/). Ongoing collaboration with Johannes Jaeger's group.
# * [Inferring Transcription Factor Activities by Combining Binding Information with Gene Expression Profiles](./transcriptionFactorActivities.ipynb) M. Arif Rahman and Neil D. Lawrence. This work is funded by a Commonwealth Scholarship to Arif Rahman and by the EU FP7 RADIANT project.
# * [tSNE PCA vs (Bayesian)-GPLVM](./tSNE-over-interpretation.ipynb) tSNE comparison to GPLVM and BGPLVM based on tweet https://twitter.com/mikelove/status/738021869341839360, showing 'artificial' structure introduced by tSNE into data.
# 
# #### modified 30th March 2015 with Sura Al-Zaki

# In[ ]: