import numpy as np import matplotlib.pyplot as plt from scipy.spatial import Voronoi def voronoi_finite_polygons_2d(vor, radius=None): """ Reconstruct infinite voronoi regions in a 2D diagram to finite regions. Parameters ---------- vor : Voronoi Input diagram radius : float, optional Distance to 'points at infinity'. Returns ------- regions : list of tuples Indices of vertices in each revised Voronoi regions. vertices : list of tuples Coordinates for revised Voronoi vertices. Same as coordinates of input vertices, with 'points at infinity' appended to the end. """ if vor.points.shape[1] != 2: raise ValueError("Requires 2D input") new_regions = [] new_vertices = vor.vertices.tolist() center = vor.points.mean(axis=0) if radius is None: radius = vor.points.ptp().max()*2 # Construct a map containing all ridges for a given point all_ridges = {} for (p1, p2), (v1, v2) in zip(vor.ridge_points, vor.ridge_vertices): all_ridges.setdefault(p1, []).append((p2, v1, v2)) all_ridges.setdefault(p2, []).append((p1, v1, v2)) # Reconstruct infinite regions for p1, region in enumerate(vor.point_region): vertices = vor.regions[region] if all([v >= 0 for v in vertices]): # finite region new_regions.append(vertices) continue # reconstruct a non-finite region ridges = all_ridges[p1] new_region = [v for v in vertices if v >= 0] for p2, v1, v2 in ridges: if v2 < 0: v1, v2 = v2, v1 if v1 >= 0: # finite ridge: already in the region continue # Compute the missing endpoint of an infinite ridge t = vor.points[p2] - vor.points[p1] # tangent t /= np.linalg.norm(t) n = np.array([-t[1], t[0]]) # normal midpoint = vor.points[[p1, p2]].mean(axis=0) direction = np.sign(np.dot(midpoint - center, n)) * n far_point = vor.vertices[v2] + direction * radius new_region.append(len(new_vertices)) new_vertices.append(far_point.tolist()) # sort region counterclockwise vs = np.asarray([new_vertices[v] for v in new_region]) c = vs.mean(axis=0) angles = np.arctan2(vs[:,1] - c[1], vs[:,0] - c[0]) new_region = np.array(new_region)[np.argsort(angles)] # finish new_regions.append(new_region.tolist()) return new_regions, np.asarray(new_vertices) # make up data points np.random.seed(1234) points = np.random.rand(15, 2) # compute Voronoi tesselation vor = Voronoi(points) # plot regions, vertices = voronoi_finite_polygons_2d(vor) print "--" print regions print "--" print vertices # colorize for region in regions: polygon = vertices[region] plt.fill(*zip(*polygon), alpha=0.4) plt.plot(points[:,0], points[:,1], 'ko') plt.axis('equal') plt.xlim(vor.min_bound[0] - 0.1, vor.max_bound[0] + 0.1) plt.ylim(vor.min_bound[1] - 0.1, vor.max_bound[1] + 0.1)