#!/usr/bin/env python
# coding: utf-8

# In[1]:


from feature_table.artifact_types.feature_table import FeatureTable, Frequency


# In[2]:


# this is temporarily in place for testing purposes
import biom
biom_path = "/Users/caporaso/code/q2d2/example-data/keyboard/q191/otu-table.tsv"
#table = biom.util.biom_open(open(biom_path))
table = biom.load_table(biom_path)


# In[3]:


print(table.head(n=5))


# In[4]:


from qiime.sdk.artifact import Artifact


# In[5]:


Artifact.save(table, FeatureTable[Frequency], "nothing...", "./table.qtf")


# In[6]:


get_ipython().system('pwd')


# In[7]:


a = Artifact('./table.qtf')


# In[8]:


a


# In[9]:


a.data


# In[10]:


a.uuid


# In[11]:


a.provenance


# In[12]:


print(a.data.head(n=5))


# In[13]:


a.type


# In[18]:


a.type.get_columns(a.data)[:5]


# In[16]:


a.type.get_values(a.data, 'New.CleanUp.ReferenceOTU0')[:5]


# In[ ]: